Multiple sequence alignment - TraesCS3B01G553100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G553100 chr3B 100.000 3441 0 0 1 3441 787809989 787813429 0.000000e+00 6355.0
1 TraesCS3B01G553100 chr3B 95.652 506 13 4 915 1420 787558925 787558429 0.000000e+00 804.0
2 TraesCS3B01G553100 chr3B 88.832 582 59 3 1993 2573 787430391 787429815 0.000000e+00 710.0
3 TraesCS3B01G553100 chr3B 92.245 490 19 8 231 713 787559541 787559064 0.000000e+00 676.0
4 TraesCS3B01G553100 chr3B 93.176 425 20 6 2760 3179 787551362 787550942 1.750000e-172 616.0
5 TraesCS3B01G553100 chr3B 87.298 496 51 7 2004 2495 786776345 786776832 1.080000e-154 556.0
6 TraesCS3B01G553100 chr3B 87.449 494 48 6 236 727 787555105 787554624 1.080000e-154 556.0
7 TraesCS3B01G553100 chr3B 85.010 507 67 7 1998 2500 786780956 786781457 1.100000e-139 507.0
8 TraesCS3B01G553100 chr3B 86.183 427 29 13 2371 2767 787552964 787552538 5.270000e-118 435.0
9 TraesCS3B01G553100 chr3B 90.634 331 13 1 783 1095 787554631 787554301 1.140000e-114 424.0
10 TraesCS3B01G553100 chr3B 82.540 378 44 11 1047 1420 620324361 620324002 2.580000e-81 313.0
11 TraesCS3B01G553100 chr3B 92.929 198 13 1 3171 3368 787549508 787549312 1.560000e-73 287.0
12 TraesCS3B01G553100 chr3B 95.000 140 2 4 1 139 787559682 787559547 7.480000e-52 215.0
13 TraesCS3B01G553100 chr3B 88.000 175 12 3 538 711 787430907 787430741 7.530000e-47 198.0
14 TraesCS3B01G553100 chr3B 81.043 211 30 9 2911 3119 817645196 817645398 3.550000e-35 159.0
15 TraesCS3B01G553100 chr3B 94.898 98 5 0 1898 1995 620323815 620323718 1.650000e-33 154.0
16 TraesCS3B01G553100 chr3B 93.878 98 6 0 1898 1995 785229633 785229730 7.690000e-32 148.0
17 TraesCS3B01G553100 chr3B 98.507 67 1 0 771 837 787559057 787558991 6.030000e-23 119.0
18 TraesCS3B01G553100 chr3A 87.891 1024 85 20 2000 2987 719046848 719045828 0.000000e+00 1168.0
19 TraesCS3B01G553100 chr3A 86.992 492 54 4 2007 2495 718371463 718371947 2.340000e-151 545.0
20 TraesCS3B01G553100 chr3A 83.677 582 72 15 1998 2573 718375449 718376013 8.460000e-146 527.0
21 TraesCS3B01G553100 chr3A 89.439 303 24 5 2992 3286 719045429 719045127 3.240000e-100 375.0
22 TraesCS3B01G553100 chr3A 86.689 293 28 4 990 1282 620659759 620659478 7.170000e-82 315.0
23 TraesCS3B01G553100 chr3A 80.851 376 37 19 945 1319 719047806 719047465 2.630000e-66 263.0
24 TraesCS3B01G553100 chr3A 85.784 204 19 7 1409 1611 58079229 58079035 1.250000e-49 207.0
25 TraesCS3B01G553100 chr3A 94.898 98 5 0 1898 1995 620659196 620659099 1.650000e-33 154.0
26 TraesCS3B01G553100 chr3A 83.929 168 14 8 1641 1797 620659357 620659192 7.690000e-32 148.0
27 TraesCS3B01G553100 chr3D 82.942 809 48 31 989 1796 588829290 588828571 0.000000e+00 647.0
28 TraesCS3B01G553100 chr3D 86.719 512 62 4 1990 2500 588828351 588827845 6.450000e-157 564.0
29 TraesCS3B01G553100 chr3D 86.905 504 52 7 1998 2495 588333966 588334461 1.400000e-153 553.0
30 TraesCS3B01G553100 chr3D 84.629 579 51 19 236 790 588830078 588829514 3.020000e-150 542.0
31 TraesCS3B01G553100 chr3D 85.827 508 61 8 1998 2500 588344475 588344976 2.350000e-146 529.0
32 TraesCS3B01G553100 chr3D 87.294 425 37 8 368 788 589009690 589009279 1.450000e-128 470.0
33 TraesCS3B01G553100 chr3D 79.730 592 71 22 747 1308 589009242 589008670 1.940000e-102 383.0
34 TraesCS3B01G553100 chr3D 86.598 194 7 3 820 994 588829514 588829321 2.710000e-46 196.0
35 TraesCS3B01G553100 chr7D 88.650 326 32 4 2912 3236 163669816 163669495 3.220000e-105 392.0
36 TraesCS3B01G553100 chr7D 95.495 111 5 0 1791 1901 461166008 461166118 9.810000e-41 178.0
37 TraesCS3B01G553100 chr7D 95.455 110 5 0 1791 1900 517821218 517821327 3.530000e-40 176.0
38 TraesCS3B01G553100 chr7D 91.870 123 8 1 1794 1914 579148808 579148686 1.640000e-38 171.0
39 TraesCS3B01G553100 chr6B 83.562 438 51 11 989 1420 219976400 219975978 1.160000e-104 390.0
40 TraesCS3B01G553100 chr6B 86.769 325 40 3 2912 3235 634324874 634324552 3.270000e-95 359.0
41 TraesCS3B01G553100 chr7A 83.245 376 46 7 1047 1420 648154707 648154347 2.560000e-86 329.0
42 TraesCS3B01G553100 chr7A 85.827 254 27 6 1359 1611 627406360 627406605 9.470000e-66 261.0
43 TraesCS3B01G553100 chr7A 94.898 98 5 0 1898 1995 648154076 648153979 1.650000e-33 154.0
44 TraesCS3B01G553100 chr2B 83.791 364 37 11 1061 1420 219872557 219872212 3.310000e-85 326.0
45 TraesCS3B01G553100 chr2B 87.549 257 23 6 1356 1611 610243839 610244087 4.340000e-74 289.0
46 TraesCS3B01G553100 chr2B 89.844 128 9 4 1792 1917 30584350 30584225 9.880000e-36 161.0
47 TraesCS3B01G553100 chr2B 94.898 98 5 0 1898 1995 219871939 219871842 1.650000e-33 154.0
48 TraesCS3B01G553100 chr6A 84.356 326 46 4 2912 3235 564135310 564134988 7.170000e-82 315.0
49 TraesCS3B01G553100 chr6A 83.436 326 49 4 2912 3235 564193861 564193539 7.220000e-77 298.0
50 TraesCS3B01G553100 chr5D 87.008 254 24 6 1359 1611 289560750 289560995 9.410000e-71 278.0
51 TraesCS3B01G553100 chr5D 78.507 335 62 8 2905 3236 495885724 495885397 9.680000e-51 211.0
52 TraesCS3B01G553100 chr6D 83.513 279 36 5 2911 3183 420938189 420937915 5.700000e-63 252.0
53 TraesCS3B01G553100 chr6D 93.750 112 7 0 1795 1906 405193921 405193810 5.910000e-38 169.0
54 TraesCS3B01G553100 chr4D 86.275 204 18 7 1409 1611 446553425 446553231 2.690000e-51 213.0
55 TraesCS3B01G553100 chr4D 85.294 204 20 7 1409 1611 99932311 99932505 5.820000e-48 202.0
56 TraesCS3B01G553100 chr4D 93.043 115 8 0 1790 1904 14854218 14854332 5.910000e-38 169.0
57 TraesCS3B01G553100 chr1A 86.275 204 18 7 1409 1611 67962888 67962694 2.690000e-51 213.0
58 TraesCS3B01G553100 chr1A 85.784 204 19 7 1409 1611 359189861 359190055 1.250000e-49 207.0
59 TraesCS3B01G553100 chr1A 82.000 200 25 7 1185 1383 61236784 61236595 3.550000e-35 159.0
60 TraesCS3B01G553100 chr1D 95.327 107 5 0 1795 1901 19774788 19774682 1.640000e-38 171.0
61 TraesCS3B01G553100 chr2D 94.495 109 6 0 1793 1901 291591828 291591720 5.910000e-38 169.0
62 TraesCS3B01G553100 chr7B 93.694 111 7 0 1791 1901 31838465 31838575 2.120000e-37 167.0
63 TraesCS3B01G553100 chr4B 94.792 96 5 0 1900 1995 659734078 659733983 2.140000e-32 150.0
64 TraesCS3B01G553100 chr4A 94.915 59 3 0 1898 1956 707655436 707655494 3.660000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G553100 chr3B 787809989 787813429 3440 False 6355.000000 6355 100.000000 1 3441 1 chr3B.!!$F4 3440
1 TraesCS3B01G553100 chr3B 786780956 786781457 501 False 507.000000 507 85.010000 1998 2500 1 chr3B.!!$F3 502
2 TraesCS3B01G553100 chr3B 787549312 787559682 10370 True 459.111111 804 92.419444 1 3368 9 chr3B.!!$R3 3367
3 TraesCS3B01G553100 chr3B 787429815 787430907 1092 True 454.000000 710 88.416000 538 2573 2 chr3B.!!$R2 2035
4 TraesCS3B01G553100 chr3B 620323718 620324361 643 True 233.500000 313 88.719000 1047 1995 2 chr3B.!!$R1 948
5 TraesCS3B01G553100 chr3A 719045127 719047806 2679 True 602.000000 1168 86.060333 945 3286 3 chr3A.!!$R3 2341
6 TraesCS3B01G553100 chr3A 718371463 718376013 4550 False 536.000000 545 85.334500 1998 2573 2 chr3A.!!$F1 575
7 TraesCS3B01G553100 chr3A 620659099 620659759 660 True 205.666667 315 88.505333 990 1995 3 chr3A.!!$R2 1005
8 TraesCS3B01G553100 chr3D 588344475 588344976 501 False 529.000000 529 85.827000 1998 2500 1 chr3D.!!$F2 502
9 TraesCS3B01G553100 chr3D 588827845 588830078 2233 True 487.250000 647 85.222000 236 2500 4 chr3D.!!$R1 2264
10 TraesCS3B01G553100 chr3D 589008670 589009690 1020 True 426.500000 470 83.512000 368 1308 2 chr3D.!!$R2 940
11 TraesCS3B01G553100 chr7A 648153979 648154707 728 True 241.500000 329 89.071500 1047 1995 2 chr7A.!!$R1 948
12 TraesCS3B01G553100 chr2B 219871842 219872557 715 True 240.000000 326 89.344500 1061 1995 2 chr2B.!!$R2 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 207 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.00 0.00 3.82 F
1059 1254 0.619832 TCCTGCTCCTCTTCCATGCT 60.620 55.0 0.00 0.00 0.00 3.79 F
1721 6562 0.618458 GGATTGACAGGGCCTGTGTA 59.382 55.0 42.11 28.32 45.44 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 5964 0.035820 TAAATCCAAGCCGCCGTCTT 60.036 50.0 0.0 0.0 0.00 3.01 R
2124 9661 0.975040 TTGTGGCCCTTTGCACTTGT 60.975 50.0 0.0 0.0 43.89 3.16 R
3369 13984 0.250295 CAGTGACGGAGCCAGGAAAA 60.250 55.0 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 4.337555 GTCCATGGGTGATGAAAGATTCTG 59.662 45.833 13.02 0.00 33.31 3.02
54 56 4.227982 TCCATGGGTGATGAAAGATTCTGA 59.772 41.667 13.02 0.00 33.31 3.27
55 57 4.337555 CCATGGGTGATGAAAGATTCTGAC 59.662 45.833 2.85 0.00 33.31 3.51
140 142 8.972127 TCACTATTAGTTCTGAAATGAGCTACT 58.028 33.333 0.00 0.00 31.25 2.57
145 147 8.948631 TTAGTTCTGAAATGAGCTACTAATGG 57.051 34.615 0.00 0.00 31.25 3.16
146 148 6.352516 AGTTCTGAAATGAGCTACTAATGGG 58.647 40.000 0.00 0.00 0.00 4.00
148 150 3.817647 CTGAAATGAGCTACTAATGGGCC 59.182 47.826 0.00 0.00 0.00 5.80
149 151 3.201930 TGAAATGAGCTACTAATGGGCCA 59.798 43.478 9.61 9.61 0.00 5.36
151 153 4.459852 AATGAGCTACTAATGGGCCAAT 57.540 40.909 11.89 4.19 0.00 3.16
152 154 5.582950 AATGAGCTACTAATGGGCCAATA 57.417 39.130 11.89 5.51 0.00 1.90
154 156 4.231273 TGAGCTACTAATGGGCCAATAGA 58.769 43.478 30.58 15.46 0.00 1.98
155 157 4.040461 TGAGCTACTAATGGGCCAATAGAC 59.960 45.833 30.58 19.71 0.00 2.59
156 158 3.328050 AGCTACTAATGGGCCAATAGACC 59.672 47.826 30.58 18.41 0.00 3.85
157 159 2.930826 ACTAATGGGCCAATAGACCG 57.069 50.000 30.58 9.49 0.00 4.79
158 160 2.124411 ACTAATGGGCCAATAGACCGT 58.876 47.619 30.58 10.11 0.00 4.83
160 162 2.930826 AATGGGCCAATAGACCGTAG 57.069 50.000 11.89 0.00 0.00 3.51
182 184 9.908152 CGTAGGTTGATATTTCTGTGATATACA 57.092 33.333 0.00 0.00 37.78 2.29
195 197 8.647143 TCTGTGATATACATATTGTGTGTGTG 57.353 34.615 0.00 0.00 42.24 3.82
197 199 8.195617 TGTGATATACATATTGTGTGTGTGTG 57.804 34.615 0.00 0.00 42.24 3.82
199 201 8.116136 GTGATATACATATTGTGTGTGTGTGTG 58.884 37.037 0.00 0.00 42.24 3.82
200 202 7.821846 TGATATACATATTGTGTGTGTGTGTGT 59.178 33.333 0.00 0.00 42.24 3.72
201 203 4.550577 ACATATTGTGTGTGTGTGTGTG 57.449 40.909 0.00 0.00 40.28 3.82
202 204 3.944650 ACATATTGTGTGTGTGTGTGTGT 59.055 39.130 0.00 0.00 40.28 3.72
203 205 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
204 206 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
205 207 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
206 208 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
207 209 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
208 210 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
209 211 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
210 212 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
211 213 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
212 214 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
213 215 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
215 217 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
216 218 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
217 219 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
222 224 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
223 225 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
224 226 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
225 227 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
226 228 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
227 229 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
228 230 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
355 358 4.787135 AACCCCAAATTTGACAAACCAT 57.213 36.364 19.86 0.00 0.00 3.55
366 369 2.546368 TGACAAACCATACACACGAAGC 59.454 45.455 0.00 0.00 0.00 3.86
369 372 3.630312 ACAAACCATACACACGAAGCTTT 59.370 39.130 0.00 0.00 0.00 3.51
438 441 7.638683 ACGAAAGTACAAACTTCGAAGAAAATG 59.361 33.333 31.08 22.31 45.37 2.32
443 446 1.234821 ACTTCGAAGAAAATGCGGCA 58.765 45.000 31.08 4.58 45.90 5.69
464 467 2.766313 TCGCAAGTGCATGTCTACTTT 58.234 42.857 3.87 0.00 42.21 2.66
470 473 5.179368 GCAAGTGCATGTCTACTTTTACTCA 59.821 40.000 8.71 0.00 41.59 3.41
724 762 4.906747 TTATTTTGGCCCAATCAAAGCT 57.093 36.364 0.00 0.00 35.81 3.74
749 787 3.896648 AAGTTTATGTTGACCACTGCG 57.103 42.857 0.00 0.00 0.00 5.18
769 892 4.334203 TGCGTACAGTGTTGTTTTCTGAAT 59.666 37.500 0.00 0.00 38.76 2.57
798 922 2.359975 GAAGGCTTCCCCACCACG 60.360 66.667 16.50 0.00 35.39 4.94
853 977 3.217626 GAGCCAATGGTGGGATTAAGAG 58.782 50.000 0.00 0.00 46.09 2.85
1003 1197 1.012841 GAAGCTTCCGCTGAAGATGG 58.987 55.000 20.64 0.00 46.09 3.51
1059 1254 0.619832 TCCTGCTCCTCTTCCATGCT 60.620 55.000 0.00 0.00 0.00 3.79
1384 5885 3.652057 TGGAGGGATTTGGTCTGATTC 57.348 47.619 0.00 0.00 0.00 2.52
1435 5938 3.009473 AGTGATGGTGTTGGATAGCACTT 59.991 43.478 0.00 0.00 36.49 3.16
1449 5952 3.838244 AGCACTTCAGTGTTACCTGAA 57.162 42.857 8.72 12.97 46.43 3.02
1458 5961 4.582656 TCAGTGTTACCTGAATTTGGTTGG 59.417 41.667 8.97 0.00 38.49 3.77
1459 5962 4.582656 CAGTGTTACCTGAATTTGGTTGGA 59.417 41.667 8.97 0.00 38.88 3.53
1461 5964 4.825085 GTGTTACCTGAATTTGGTTGGAGA 59.175 41.667 8.97 0.00 38.88 3.71
1479 5991 1.303317 AAGACGGCGGCTTGGATTT 60.303 52.632 29.83 0.43 0.00 2.17
1521 6071 3.257393 GACGAACTGAGATGTTCTGCAT 58.743 45.455 0.00 0.00 42.82 3.96
1522 6072 3.668447 ACGAACTGAGATGTTCTGCATT 58.332 40.909 0.00 0.00 42.82 3.56
1523 6073 3.434641 ACGAACTGAGATGTTCTGCATTG 59.565 43.478 0.00 0.00 42.82 2.82
1524 6074 3.727079 CGAACTGAGATGTTCTGCATTGC 60.727 47.826 0.46 0.46 42.82 3.56
1525 6075 2.786777 ACTGAGATGTTCTGCATTGCA 58.213 42.857 11.50 11.50 38.06 4.08
1526 6076 3.151554 ACTGAGATGTTCTGCATTGCAA 58.848 40.909 13.18 0.00 38.41 4.08
1527 6077 3.190744 ACTGAGATGTTCTGCATTGCAAG 59.809 43.478 13.18 6.24 38.41 4.01
1604 6429 7.553881 TTGTTAACTGAATATAGCCTCTTGC 57.446 36.000 7.22 0.00 41.71 4.01
1632 6470 1.027357 ATCGGCCATTCACATGCTTC 58.973 50.000 2.24 0.00 0.00 3.86
1658 6496 3.435566 CATCTGCAATTCACATGCTGTC 58.564 45.455 0.00 0.00 44.14 3.51
1660 6498 2.885894 TCTGCAATTCACATGCTGTCAA 59.114 40.909 0.00 0.00 44.14 3.18
1682 6520 9.331282 GTCAACTGAATATAGCCTCTTGTTAAT 57.669 33.333 0.00 0.00 0.00 1.40
1710 6548 3.495983 CCCATATGCGGTTAGGATTGACA 60.496 47.826 0.00 0.00 31.61 3.58
1716 6554 0.919710 GGTTAGGATTGACAGGGCCT 59.080 55.000 0.00 0.00 34.56 5.19
1721 6562 0.618458 GGATTGACAGGGCCTGTGTA 59.382 55.000 42.11 28.32 45.44 2.90
1738 6579 4.616553 TGTGTAGAGTTCCTGGGCTTATA 58.383 43.478 0.00 0.00 0.00 0.98
1747 6588 6.494059 AGTTCCTGGGCTTATAAAAACAGAT 58.506 36.000 10.06 0.00 0.00 2.90
1748 6589 6.954102 AGTTCCTGGGCTTATAAAAACAGATT 59.046 34.615 10.06 0.00 0.00 2.40
1797 6638 8.961294 ATTACAGAGTATCGTTCAGTAGTACT 57.039 34.615 0.00 0.00 42.67 2.73
1798 6639 6.907206 ACAGAGTATCGTTCAGTAGTACTC 57.093 41.667 0.00 0.00 42.67 2.59
1799 6640 5.816777 ACAGAGTATCGTTCAGTAGTACTCC 59.183 44.000 0.00 0.00 41.19 3.85
1802 6643 5.367302 AGTATCGTTCAGTAGTACTCCCTC 58.633 45.833 0.00 0.00 0.00 4.30
1803 6644 2.996631 TCGTTCAGTAGTACTCCCTCC 58.003 52.381 0.00 0.00 0.00 4.30
1805 6646 2.720915 GTTCAGTAGTACTCCCTCCGT 58.279 52.381 0.00 0.00 0.00 4.69
1806 6647 3.679917 CGTTCAGTAGTACTCCCTCCGTA 60.680 52.174 0.00 0.00 0.00 4.02
1807 6648 3.550437 TCAGTAGTACTCCCTCCGTAC 57.450 52.381 0.00 0.00 37.96 3.67
1808 6649 2.840038 TCAGTAGTACTCCCTCCGTACA 59.160 50.000 0.00 0.00 39.66 2.90
1809 6650 3.118482 TCAGTAGTACTCCCTCCGTACAG 60.118 52.174 0.00 0.00 39.66 2.74
1814 6655 5.121380 AGTACTCCCTCCGTACAGAATTA 57.879 43.478 0.00 0.00 39.66 1.40
1816 6657 3.978610 ACTCCCTCCGTACAGAATTACT 58.021 45.455 0.00 0.00 0.00 2.24
1817 6658 4.351127 ACTCCCTCCGTACAGAATTACTT 58.649 43.478 0.00 0.00 0.00 2.24
1818 6659 4.159879 ACTCCCTCCGTACAGAATTACTTG 59.840 45.833 0.00 0.00 0.00 3.16
1820 6661 4.159135 TCCCTCCGTACAGAATTACTTGTC 59.841 45.833 0.00 0.00 0.00 3.18
1821 6662 4.081862 CCCTCCGTACAGAATTACTTGTCA 60.082 45.833 0.00 0.00 0.00 3.58
1823 6664 5.456548 TCCGTACAGAATTACTTGTCACA 57.543 39.130 0.00 0.00 0.00 3.58
1825 6666 5.924254 TCCGTACAGAATTACTTGTCACAAG 59.076 40.000 16.42 16.42 0.00 3.16
1826 6667 5.924254 CCGTACAGAATTACTTGTCACAAGA 59.076 40.000 24.73 2.64 0.00 3.02
1827 6668 6.422701 CCGTACAGAATTACTTGTCACAAGAA 59.577 38.462 24.73 13.64 0.00 2.52
1828 6669 7.117812 CCGTACAGAATTACTTGTCACAAGAAT 59.882 37.037 24.73 15.18 0.00 2.40
1829 6670 9.135843 CGTACAGAATTACTTGTCACAAGAATA 57.864 33.333 24.73 8.79 0.00 1.75
1832 6673 9.950496 ACAGAATTACTTGTCACAAGAATAGAT 57.050 29.630 24.73 2.85 0.00 1.98
1834 6675 9.950496 AGAATTACTTGTCACAAGAATAGATGT 57.050 29.630 24.73 2.24 0.00 3.06
1843 6684 9.803315 TGTCACAAGAATAGATGTATCTACAAC 57.197 33.333 3.84 0.00 41.77 3.32
1876 6717 9.113838 ACATCTACATACATTCATTTCTTGGAC 57.886 33.333 0.00 0.00 0.00 4.02
1877 6718 7.770801 TCTACATACATTCATTTCTTGGACG 57.229 36.000 0.00 0.00 0.00 4.79
1878 6719 7.552459 TCTACATACATTCATTTCTTGGACGA 58.448 34.615 0.00 0.00 0.00 4.20
1879 6720 6.668541 ACATACATTCATTTCTTGGACGAG 57.331 37.500 0.00 0.00 0.00 4.18
1880 6721 6.173339 ACATACATTCATTTCTTGGACGAGT 58.827 36.000 0.00 0.00 0.00 4.18
1881 6722 7.327975 ACATACATTCATTTCTTGGACGAGTA 58.672 34.615 0.00 0.00 0.00 2.59
1882 6723 7.822334 ACATACATTCATTTCTTGGACGAGTAA 59.178 33.333 0.00 0.00 0.00 2.24
1883 6724 8.830580 CATACATTCATTTCTTGGACGAGTAAT 58.169 33.333 0.00 0.00 0.00 1.89
1884 6725 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1885 6726 8.110860 ACATTCATTTCTTGGACGAGTAATTT 57.889 30.769 0.00 0.00 0.00 1.82
1886 6727 8.237267 ACATTCATTTCTTGGACGAGTAATTTC 58.763 33.333 0.00 0.00 0.00 2.17
1887 6728 6.403333 TCATTTCTTGGACGAGTAATTTCG 57.597 37.500 0.00 0.00 45.70 3.46
1888 6729 6.160684 TCATTTCTTGGACGAGTAATTTCGA 58.839 36.000 6.54 0.00 43.03 3.71
1889 6730 6.647481 TCATTTCTTGGACGAGTAATTTCGAA 59.353 34.615 6.54 0.00 43.03 3.71
1890 6731 5.834239 TTCTTGGACGAGTAATTTCGAAC 57.166 39.130 6.54 0.00 43.03 3.95
1891 6732 3.916172 TCTTGGACGAGTAATTTCGAACG 59.084 43.478 6.54 0.00 43.03 3.95
1892 6733 2.598589 TGGACGAGTAATTTCGAACGG 58.401 47.619 6.54 0.00 43.03 4.44
1893 6734 2.228582 TGGACGAGTAATTTCGAACGGA 59.771 45.455 6.54 0.00 43.03 4.69
1894 6735 2.850647 GGACGAGTAATTTCGAACGGAG 59.149 50.000 6.54 0.00 43.03 4.63
1895 6736 2.850647 GACGAGTAATTTCGAACGGAGG 59.149 50.000 6.54 0.00 43.03 4.30
1896 6737 2.190981 CGAGTAATTTCGAACGGAGGG 58.809 52.381 0.00 0.00 43.03 4.30
1913 6754 4.287552 GGAGGGAGTACATCAGTAGGAAA 58.712 47.826 0.00 0.00 0.00 3.13
1914 6755 4.099727 GGAGGGAGTACATCAGTAGGAAAC 59.900 50.000 0.00 0.00 0.00 2.78
1916 6757 5.342866 AGGGAGTACATCAGTAGGAAACTT 58.657 41.667 0.00 0.00 43.67 2.66
1919 6760 5.187186 GGAGTACATCAGTAGGAAACTTGGA 59.813 44.000 0.00 0.00 43.67 3.53
1920 6761 6.038997 AGTACATCAGTAGGAAACTTGGAC 57.961 41.667 0.00 0.00 43.67 4.02
1921 6762 4.974645 ACATCAGTAGGAAACTTGGACA 57.025 40.909 0.00 0.00 43.67 4.02
1922 6763 5.505181 ACATCAGTAGGAAACTTGGACAT 57.495 39.130 0.00 0.00 43.67 3.06
1923 6764 5.491982 ACATCAGTAGGAAACTTGGACATC 58.508 41.667 0.00 0.00 43.67 3.06
1924 6765 5.013079 ACATCAGTAGGAAACTTGGACATCA 59.987 40.000 0.00 0.00 43.67 3.07
1925 6766 5.152623 TCAGTAGGAAACTTGGACATCAG 57.847 43.478 0.00 0.00 43.67 2.90
1926 6767 4.838423 TCAGTAGGAAACTTGGACATCAGA 59.162 41.667 0.00 0.00 43.67 3.27
1927 6768 5.485353 TCAGTAGGAAACTTGGACATCAGAT 59.515 40.000 0.00 0.00 43.67 2.90
1928 6769 5.583854 CAGTAGGAAACTTGGACATCAGATG 59.416 44.000 9.03 9.03 43.67 2.90
1929 6770 3.960571 AGGAAACTTGGACATCAGATGG 58.039 45.455 15.13 0.00 37.44 3.51
1930 6771 2.424956 GGAAACTTGGACATCAGATGGC 59.575 50.000 15.13 11.81 37.65 4.40
1931 6772 3.350833 GAAACTTGGACATCAGATGGCT 58.649 45.455 16.28 0.00 38.72 4.75
1932 6773 4.517285 GAAACTTGGACATCAGATGGCTA 58.483 43.478 16.28 7.28 38.72 3.93
1933 6774 4.785346 AACTTGGACATCAGATGGCTAT 57.215 40.909 16.28 0.00 38.72 2.97
1934 6775 5.894298 AACTTGGACATCAGATGGCTATA 57.106 39.130 16.28 0.48 38.72 1.31
1935 6776 5.894298 ACTTGGACATCAGATGGCTATAA 57.106 39.130 16.28 8.27 38.72 0.98
1936 6777 5.862845 ACTTGGACATCAGATGGCTATAAG 58.137 41.667 16.28 17.87 38.72 1.73
1937 6778 5.367937 ACTTGGACATCAGATGGCTATAAGT 59.632 40.000 16.28 18.42 38.72 2.24
1938 6779 6.554982 ACTTGGACATCAGATGGCTATAAGTA 59.445 38.462 22.07 2.64 38.72 2.24
1939 6780 6.596309 TGGACATCAGATGGCTATAAGTAG 57.404 41.667 16.28 0.00 38.72 2.57
1940 6781 5.481824 TGGACATCAGATGGCTATAAGTAGG 59.518 44.000 16.28 0.00 38.72 3.18
1941 6782 5.717178 GGACATCAGATGGCTATAAGTAGGA 59.283 44.000 16.28 0.00 38.72 2.94
1942 6783 6.211584 GGACATCAGATGGCTATAAGTAGGAA 59.788 42.308 16.28 0.00 38.72 3.36
1943 6784 7.256332 GGACATCAGATGGCTATAAGTAGGAAA 60.256 40.741 16.28 0.00 38.72 3.13
1944 6785 7.445945 ACATCAGATGGCTATAAGTAGGAAAC 58.554 38.462 15.13 0.00 33.60 2.78
1945 6786 7.291182 ACATCAGATGGCTATAAGTAGGAAACT 59.709 37.037 15.13 0.00 38.57 2.66
1961 6802 5.501156 AGGAAACTTGGATTCTGTATGTCC 58.499 41.667 0.00 0.00 37.44 4.02
1962 6803 4.332819 GGAAACTTGGATTCTGTATGTCCG 59.667 45.833 0.00 0.00 34.72 4.79
1972 6813 5.899120 TTCTGTATGTCCGGATAGCTATC 57.101 43.478 23.23 23.23 0.00 2.08
2029 9566 1.351017 TCACCATGTTCAGGACTTCCC 59.649 52.381 0.00 0.00 36.42 3.97
2047 9584 5.364157 ACTTCCCAGTACCTTCATCTGATAC 59.636 44.000 0.00 0.00 0.00 2.24
2050 9587 3.068165 CCAGTACCTTCATCTGATACGCA 59.932 47.826 0.00 0.00 0.00 5.24
2099 9636 1.035923 CTGCCCTATGAGCTTCGAGA 58.964 55.000 0.00 0.00 0.00 4.04
2113 9650 1.162698 TCGAGACCCAGAACTACACG 58.837 55.000 0.00 0.00 0.00 4.49
2117 9654 2.099427 GAGACCCAGAACTACACGATCC 59.901 54.545 0.00 0.00 0.00 3.36
2124 9661 4.556233 CAGAACTACACGATCCTCACAAA 58.444 43.478 0.00 0.00 0.00 2.83
2127 9664 4.330944 ACTACACGATCCTCACAAACAA 57.669 40.909 0.00 0.00 0.00 2.83
2146 9683 1.256812 AGTGCAAAGGGCCACAATAC 58.743 50.000 6.18 0.00 43.89 1.89
2155 9692 1.780919 GGGCCACAATACCCTCCTAAT 59.219 52.381 4.39 0.00 43.36 1.73
2167 9704 5.255397 ACCCTCCTAATGAATGTTGTGAA 57.745 39.130 0.00 0.00 0.00 3.18
2388 9925 1.448717 GAGCTCAAGGGAGTTCGCC 60.449 63.158 9.40 0.00 40.77 5.54
2549 10093 1.895798 TCCTTGACGCTCTCTTGATGT 59.104 47.619 0.00 0.00 0.00 3.06
2550 10094 2.300152 TCCTTGACGCTCTCTTGATGTT 59.700 45.455 0.00 0.00 0.00 2.71
2551 10095 3.509967 TCCTTGACGCTCTCTTGATGTTA 59.490 43.478 0.00 0.00 0.00 2.41
2552 10096 4.021456 TCCTTGACGCTCTCTTGATGTTAA 60.021 41.667 0.00 0.00 0.00 2.01
2573 10117 3.940209 TTGTGATTGGACATTGGCTTC 57.060 42.857 0.00 0.00 0.00 3.86
2582 10156 4.009675 TGGACATTGGCTTCATACTTGAC 58.990 43.478 0.00 0.00 0.00 3.18
2584 10158 4.095483 GGACATTGGCTTCATACTTGACAG 59.905 45.833 0.00 0.00 0.00 3.51
2601 10175 6.815641 ACTTGACAGTAGATGTTCTATTGCTG 59.184 38.462 6.88 3.94 44.17 4.41
2606 10180 8.521170 ACAGTAGATGTTCTATTGCTGTAGTA 57.479 34.615 6.88 0.00 39.96 1.82
2612 10187 4.408921 TGTTCTATTGCTGTAGTATGCCCT 59.591 41.667 0.00 0.00 0.00 5.19
2620 10195 5.505780 TGCTGTAGTATGCCCTTTTGTTAT 58.494 37.500 0.00 0.00 0.00 1.89
2684 10259 6.094464 CAGTTGATCACATCTTTCTATTGGCA 59.906 38.462 0.00 0.00 0.00 4.92
2712 10288 5.416013 TGCACACCCAAATTATAAATCACGA 59.584 36.000 0.00 0.00 0.00 4.35
2716 10292 9.364989 CACACCCAAATTATAAATCACGAAATT 57.635 29.630 0.00 0.00 0.00 1.82
2768 11535 4.568359 AGTGATAATCGTGTGTTCATCTGC 59.432 41.667 0.00 0.00 0.00 4.26
2814 11584 9.860650 TGTATTTATATGTACTGCCTTTTGGAT 57.139 29.630 0.00 0.00 44.07 3.41
2817 11587 7.956420 TTATATGTACTGCCTTTTGGATACG 57.044 36.000 0.00 0.00 44.07 3.06
2822 11592 4.499037 ACTGCCTTTTGGATACGTTTTC 57.501 40.909 0.00 0.00 44.07 2.29
2825 11595 2.094390 GCCTTTTGGATACGTTTTCCCC 60.094 50.000 13.03 0.77 44.07 4.81
2841 11611 1.077663 TCCCCGTTCCAGGTAGTACTT 59.922 52.381 0.00 0.00 0.00 2.24
2846 11616 4.323257 CCCGTTCCAGGTAGTACTTCAATT 60.323 45.833 0.00 0.00 0.00 2.32
2896 11666 1.305219 GCCCTTCACACATAAGCGCA 61.305 55.000 11.47 0.00 29.99 6.09
2897 11667 1.164411 CCCTTCACACATAAGCGCAA 58.836 50.000 11.47 0.00 0.00 4.85
2935 11706 2.293122 TGTTGACGAAAAGGCAGGATTG 59.707 45.455 0.00 0.00 40.28 2.67
2995 11766 5.239963 ACAAATTAAACGTGAAGTACAGGGG 59.760 40.000 0.00 0.00 38.51 4.79
3080 12245 0.905357 AGCCGTCTATGACCAGCTTT 59.095 50.000 4.66 0.00 35.92 3.51
3131 12296 6.662865 TTTCAGAAATAATGGTCTTGGCAA 57.337 33.333 0.00 0.00 0.00 4.52
3280 13895 3.800506 GGCAATCAAACTCTTATGCATGC 59.199 43.478 11.82 11.82 35.57 4.06
3291 13906 2.734755 TATGCATGCCCAGCTTTAGT 57.265 45.000 16.68 0.00 0.00 2.24
3341 13956 4.396478 GGTGGCAATTCTCTTCCTTTAGTC 59.604 45.833 0.00 0.00 0.00 2.59
3352 13967 1.648467 CCTTTAGTCAGCTTGCGGCC 61.648 60.000 0.00 0.00 43.05 6.13
3374 13989 3.510388 GCACTGGCTCCTAATTTTTCC 57.490 47.619 0.00 0.00 36.96 3.13
3375 13990 3.092301 GCACTGGCTCCTAATTTTTCCT 58.908 45.455 0.00 0.00 36.96 3.36
3376 13991 3.119352 GCACTGGCTCCTAATTTTTCCTG 60.119 47.826 0.00 0.00 36.96 3.86
3377 13992 3.445096 CACTGGCTCCTAATTTTTCCTGG 59.555 47.826 0.00 0.00 0.00 4.45
3378 13993 2.428530 CTGGCTCCTAATTTTTCCTGGC 59.571 50.000 0.00 0.00 0.00 4.85
3379 13994 2.042979 TGGCTCCTAATTTTTCCTGGCT 59.957 45.455 0.00 0.00 0.00 4.75
3380 13995 2.690497 GGCTCCTAATTTTTCCTGGCTC 59.310 50.000 0.00 0.00 0.00 4.70
3381 13996 2.690497 GCTCCTAATTTTTCCTGGCTCC 59.310 50.000 0.00 0.00 0.00 4.70
3382 13997 2.945668 CTCCTAATTTTTCCTGGCTCCG 59.054 50.000 0.00 0.00 0.00 4.63
3383 13998 2.307686 TCCTAATTTTTCCTGGCTCCGT 59.692 45.455 0.00 0.00 0.00 4.69
3384 13999 2.683362 CCTAATTTTTCCTGGCTCCGTC 59.317 50.000 0.00 0.00 0.00 4.79
3385 14000 2.286365 AATTTTTCCTGGCTCCGTCA 57.714 45.000 0.00 0.00 0.00 4.35
3386 14001 1.534729 ATTTTTCCTGGCTCCGTCAC 58.465 50.000 0.00 0.00 0.00 3.67
3387 14002 0.472471 TTTTTCCTGGCTCCGTCACT 59.528 50.000 0.00 0.00 0.00 3.41
3388 14003 0.250295 TTTTCCTGGCTCCGTCACTG 60.250 55.000 0.00 0.00 0.00 3.66
3389 14004 1.407656 TTTCCTGGCTCCGTCACTGT 61.408 55.000 0.00 0.00 0.00 3.55
3390 14005 1.407656 TTCCTGGCTCCGTCACTGTT 61.408 55.000 0.00 0.00 0.00 3.16
3391 14006 1.071471 CCTGGCTCCGTCACTGTTT 59.929 57.895 0.00 0.00 0.00 2.83
3392 14007 0.320374 CCTGGCTCCGTCACTGTTTA 59.680 55.000 0.00 0.00 0.00 2.01
3393 14008 1.673033 CCTGGCTCCGTCACTGTTTAG 60.673 57.143 0.00 0.00 0.00 1.85
3394 14009 1.272490 CTGGCTCCGTCACTGTTTAGA 59.728 52.381 0.00 0.00 0.00 2.10
3395 14010 1.272490 TGGCTCCGTCACTGTTTAGAG 59.728 52.381 0.00 0.00 0.00 2.43
3396 14011 1.351153 GCTCCGTCACTGTTTAGAGC 58.649 55.000 0.00 0.00 39.86 4.09
3397 14012 1.336887 GCTCCGTCACTGTTTAGAGCA 60.337 52.381 11.74 0.00 44.73 4.26
3398 14013 2.675317 GCTCCGTCACTGTTTAGAGCAT 60.675 50.000 11.74 0.00 44.73 3.79
3399 14014 3.182967 CTCCGTCACTGTTTAGAGCATC 58.817 50.000 0.00 0.00 0.00 3.91
3413 14028 1.226491 GCATCTCCAACATGCGTGC 60.226 57.895 5.64 0.00 37.51 5.34
3414 14029 1.925415 GCATCTCCAACATGCGTGCA 61.925 55.000 5.64 0.00 37.51 4.57
3415 14030 0.522626 CATCTCCAACATGCGTGCAA 59.477 50.000 5.64 0.00 0.00 4.08
3416 14031 0.523072 ATCTCCAACATGCGTGCAAC 59.477 50.000 5.64 0.00 0.00 4.17
3432 14047 3.407657 ACGTGCGGTGCGTTAAAA 58.592 50.000 0.00 0.00 39.79 1.52
3433 14048 1.720301 ACGTGCGGTGCGTTAAAAA 59.280 47.368 0.00 0.00 39.79 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 2.435059 GAGCCCAAGAGCACCGAC 60.435 66.667 0.00 0.00 34.23 4.79
140 142 2.635915 CCTACGGTCTATTGGCCCATTA 59.364 50.000 0.00 0.00 0.00 1.90
141 143 1.420138 CCTACGGTCTATTGGCCCATT 59.580 52.381 0.00 0.00 0.00 3.16
144 146 0.835276 AACCTACGGTCTATTGGCCC 59.165 55.000 0.00 0.00 33.12 5.80
145 147 1.483415 TCAACCTACGGTCTATTGGCC 59.517 52.381 0.00 0.00 33.12 5.36
146 148 2.973694 TCAACCTACGGTCTATTGGC 57.026 50.000 0.00 0.00 33.12 4.52
148 150 7.926555 ACAGAAATATCAACCTACGGTCTATTG 59.073 37.037 0.00 0.00 33.12 1.90
149 151 7.926555 CACAGAAATATCAACCTACGGTCTATT 59.073 37.037 0.00 0.00 33.12 1.73
151 153 6.604396 TCACAGAAATATCAACCTACGGTCTA 59.396 38.462 0.00 0.00 33.12 2.59
152 154 5.421056 TCACAGAAATATCAACCTACGGTCT 59.579 40.000 0.00 0.00 33.12 3.85
154 156 5.670792 TCACAGAAATATCAACCTACGGT 57.329 39.130 0.00 0.00 37.65 4.83
155 157 9.355215 GTATATCACAGAAATATCAACCTACGG 57.645 37.037 0.00 0.00 0.00 4.02
156 158 9.908152 TGTATATCACAGAAATATCAACCTACG 57.092 33.333 0.00 0.00 31.89 3.51
168 170 9.665719 ACACACACAATATGTATATCACAGAAA 57.334 29.630 0.00 0.00 40.64 2.52
169 171 9.097257 CACACACACAATATGTATATCACAGAA 57.903 33.333 0.00 0.00 40.64 3.02
170 172 8.257306 ACACACACACAATATGTATATCACAGA 58.743 33.333 0.00 0.00 40.64 3.41
171 173 8.330302 CACACACACACAATATGTATATCACAG 58.670 37.037 0.00 0.00 40.64 3.66
172 174 7.821846 ACACACACACACAATATGTATATCACA 59.178 33.333 0.00 0.00 40.64 3.58
173 175 8.116136 CACACACACACACAATATGTATATCAC 58.884 37.037 0.00 0.00 40.64 3.06
175 177 8.116136 CACACACACACACACAATATGTATATC 58.884 37.037 0.00 0.00 40.64 1.63
176 178 7.606073 ACACACACACACACACAATATGTATAT 59.394 33.333 0.00 0.00 40.64 0.86
177 179 6.931840 ACACACACACACACACAATATGTATA 59.068 34.615 0.00 0.00 40.64 1.47
180 182 3.944650 ACACACACACACACACAATATGT 59.055 39.130 0.00 0.00 44.81 2.29
182 184 3.944650 ACACACACACACACACACAATAT 59.055 39.130 0.00 0.00 0.00 1.28
183 185 3.126000 CACACACACACACACACACAATA 59.874 43.478 0.00 0.00 0.00 1.90
187 189 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
188 190 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
189 191 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
190 192 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
192 194 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
195 197 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
197 199 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
199 201 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
200 202 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
201 203 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
202 204 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
203 205 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
204 206 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
205 207 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
206 208 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
207 209 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
208 210 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
209 211 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
210 212 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
211 213 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
212 214 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
213 215 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
215 217 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
216 218 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
217 219 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
222 224 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
223 225 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
224 226 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
225 227 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
226 228 2.070028 GTACACACACACACACACACA 58.930 47.619 0.00 0.00 0.00 3.72
227 229 2.070028 TGTACACACACACACACACAC 58.930 47.619 0.00 0.00 0.00 3.82
228 230 2.457366 TGTACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
355 358 6.018507 GGTCTCTTTTTAAAGCTTCGTGTGTA 60.019 38.462 0.00 0.00 35.99 2.90
366 369 8.889717 TGTACTTCTGTTGGTCTCTTTTTAAAG 58.110 33.333 0.00 0.00 37.36 1.85
369 372 8.795842 TTTGTACTTCTGTTGGTCTCTTTTTA 57.204 30.769 0.00 0.00 0.00 1.52
443 446 2.680312 AGTAGACATGCACTTGCGAT 57.320 45.000 0.00 0.00 45.83 4.58
449 452 6.701340 TGATGAGTAAAAGTAGACATGCACT 58.299 36.000 0.00 0.00 0.00 4.40
724 762 6.039616 GCAGTGGTCAACATAAACTTTTGAA 58.960 36.000 0.00 0.00 31.21 2.69
749 787 9.599322 CATTCTATTCAGAAAACAACACTGTAC 57.401 33.333 0.00 0.00 43.89 2.90
769 892 2.505819 GGAAGCCTTCCCTGTCATTCTA 59.494 50.000 12.76 0.00 44.30 2.10
798 922 3.549625 CGGGCCTACTACGATCAGTTTAC 60.550 52.174 0.84 0.00 0.00 2.01
853 977 0.397564 TTTGTGGGGTCGAGGTAACC 59.602 55.000 0.00 0.00 35.97 2.85
1435 5938 4.582656 CCAACCAAATTCAGGTAACACTGA 59.417 41.667 3.22 0.00 45.22 3.41
1449 5952 1.534729 GCCGTCTTCTCCAACCAAAT 58.465 50.000 0.00 0.00 0.00 2.32
1454 5957 3.119096 GCCGCCGTCTTCTCCAAC 61.119 66.667 0.00 0.00 0.00 3.77
1455 5958 2.879233 AAGCCGCCGTCTTCTCCAA 61.879 57.895 0.00 0.00 0.00 3.53
1458 5961 2.579684 ATCCAAGCCGCCGTCTTCTC 62.580 60.000 0.00 0.00 0.00 2.87
1459 5962 2.185310 AATCCAAGCCGCCGTCTTCT 62.185 55.000 0.00 0.00 0.00 2.85
1461 5964 0.035820 TAAATCCAAGCCGCCGTCTT 60.036 50.000 0.00 0.00 0.00 3.01
1523 6073 0.999406 CATCAAATGCAGCTGCTTGC 59.001 50.000 36.61 14.62 44.33 4.01
1524 6074 1.067142 ACCATCAAATGCAGCTGCTTG 60.067 47.619 36.61 31.07 42.66 4.01
1525 6075 1.067142 CACCATCAAATGCAGCTGCTT 60.067 47.619 36.61 28.85 42.66 3.91
1526 6076 0.530744 CACCATCAAATGCAGCTGCT 59.469 50.000 36.61 20.88 42.66 4.24
1527 6077 1.082117 GCACCATCAAATGCAGCTGC 61.082 55.000 31.89 31.89 41.65 5.25
1620 6458 2.029623 GATGGGCAGAAGCATGTGAAT 58.970 47.619 0.00 0.00 44.61 2.57
1632 6470 1.179152 TGTGAATTGCAGATGGGCAG 58.821 50.000 0.00 0.00 45.88 4.85
1660 6498 9.905713 TCAAATTAACAAGAGGCTATATTCAGT 57.094 29.630 0.00 0.00 0.00 3.41
1682 6520 2.571212 CTAACCGCATATGGGCTCAAA 58.429 47.619 14.08 0.00 0.00 2.69
1710 6548 0.117340 AGGAACTCTACACAGGCCCT 59.883 55.000 0.00 0.00 0.00 5.19
1716 6554 1.729586 AAGCCCAGGAACTCTACACA 58.270 50.000 0.00 0.00 34.60 3.72
1721 6562 5.887754 TGTTTTTATAAGCCCAGGAACTCT 58.112 37.500 0.00 0.00 34.60 3.24
1738 6579 8.871686 GTAGTTCACCATTGAAATCTGTTTTT 57.128 30.769 0.00 0.00 43.52 1.94
1768 6609 8.189460 ACTACTGAACGATACTCTGTAATTTCC 58.811 37.037 0.00 0.00 29.98 3.13
1796 6637 4.159879 ACAAGTAATTCTGTACGGAGGGAG 59.840 45.833 4.23 0.00 0.00 4.30
1797 6638 4.091549 ACAAGTAATTCTGTACGGAGGGA 58.908 43.478 4.23 0.00 0.00 4.20
1798 6639 4.081862 TGACAAGTAATTCTGTACGGAGGG 60.082 45.833 4.23 0.00 0.00 4.30
1799 6640 4.863131 GTGACAAGTAATTCTGTACGGAGG 59.137 45.833 4.23 0.00 0.00 4.30
1802 6643 5.924254 TCTTGTGACAAGTAATTCTGTACGG 59.076 40.000 23.17 0.00 0.00 4.02
1803 6644 7.402811 TTCTTGTGACAAGTAATTCTGTACG 57.597 36.000 23.17 0.00 0.00 3.67
1806 6647 9.950496 ATCTATTCTTGTGACAAGTAATTCTGT 57.050 29.630 23.17 2.45 0.00 3.41
1808 6649 9.950496 ACATCTATTCTTGTGACAAGTAATTCT 57.050 29.630 23.17 3.47 0.00 2.40
1817 6658 9.803315 GTTGTAGATACATCTATTCTTGTGACA 57.197 33.333 2.40 0.00 41.09 3.58
1850 6691 9.113838 GTCCAAGAAATGAATGTATGTAGATGT 57.886 33.333 0.00 0.00 0.00 3.06
1851 6692 8.278408 CGTCCAAGAAATGAATGTATGTAGATG 58.722 37.037 0.00 0.00 0.00 2.90
1852 6693 8.204160 TCGTCCAAGAAATGAATGTATGTAGAT 58.796 33.333 0.00 0.00 0.00 1.98
1853 6694 7.552459 TCGTCCAAGAAATGAATGTATGTAGA 58.448 34.615 0.00 0.00 0.00 2.59
1854 6695 7.492669 ACTCGTCCAAGAAATGAATGTATGTAG 59.507 37.037 0.00 0.00 0.00 2.74
1855 6696 7.327975 ACTCGTCCAAGAAATGAATGTATGTA 58.672 34.615 0.00 0.00 0.00 2.29
1856 6697 6.173339 ACTCGTCCAAGAAATGAATGTATGT 58.827 36.000 0.00 0.00 0.00 2.29
1857 6698 6.668541 ACTCGTCCAAGAAATGAATGTATG 57.331 37.500 0.00 0.00 0.00 2.39
1858 6699 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1859 6700 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1860 6701 7.687941 AATTACTCGTCCAAGAAATGAATGT 57.312 32.000 0.00 0.00 0.00 2.71
1861 6702 7.426456 CGAAATTACTCGTCCAAGAAATGAATG 59.574 37.037 0.00 0.00 34.08 2.67
1862 6703 7.333423 TCGAAATTACTCGTCCAAGAAATGAAT 59.667 33.333 0.00 0.00 39.84 2.57
1863 6704 6.647481 TCGAAATTACTCGTCCAAGAAATGAA 59.353 34.615 0.00 0.00 39.84 2.57
1864 6705 6.160684 TCGAAATTACTCGTCCAAGAAATGA 58.839 36.000 0.00 0.00 39.84 2.57
1865 6706 6.403333 TCGAAATTACTCGTCCAAGAAATG 57.597 37.500 0.00 0.00 39.84 2.32
1866 6707 6.400727 CGTTCGAAATTACTCGTCCAAGAAAT 60.401 38.462 0.00 0.00 39.84 2.17
1867 6708 5.107760 CGTTCGAAATTACTCGTCCAAGAAA 60.108 40.000 0.00 0.00 39.84 2.52
1868 6709 4.383649 CGTTCGAAATTACTCGTCCAAGAA 59.616 41.667 0.00 0.00 39.84 2.52
1869 6710 3.916172 CGTTCGAAATTACTCGTCCAAGA 59.084 43.478 0.00 0.00 39.84 3.02
1870 6711 3.060363 CCGTTCGAAATTACTCGTCCAAG 59.940 47.826 0.00 0.00 39.84 3.61
1871 6712 2.988493 CCGTTCGAAATTACTCGTCCAA 59.012 45.455 0.00 0.00 39.84 3.53
1872 6713 2.228582 TCCGTTCGAAATTACTCGTCCA 59.771 45.455 0.00 0.00 39.84 4.02
1873 6714 2.850647 CTCCGTTCGAAATTACTCGTCC 59.149 50.000 0.00 0.00 39.84 4.79
1874 6715 2.850647 CCTCCGTTCGAAATTACTCGTC 59.149 50.000 0.00 0.00 39.84 4.20
1875 6716 2.416431 CCCTCCGTTCGAAATTACTCGT 60.416 50.000 0.00 0.00 39.84 4.18
1876 6717 2.159338 TCCCTCCGTTCGAAATTACTCG 60.159 50.000 0.00 0.00 40.25 4.18
1877 6718 3.119209 ACTCCCTCCGTTCGAAATTACTC 60.119 47.826 0.00 0.00 0.00 2.59
1878 6719 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
1879 6720 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
1880 6721 3.763360 TGTACTCCCTCCGTTCGAAATTA 59.237 43.478 0.00 0.00 0.00 1.40
1881 6722 2.564062 TGTACTCCCTCCGTTCGAAATT 59.436 45.455 0.00 0.00 0.00 1.82
1882 6723 2.173519 TGTACTCCCTCCGTTCGAAAT 58.826 47.619 0.00 0.00 0.00 2.17
1883 6724 1.619654 TGTACTCCCTCCGTTCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
1884 6725 1.747355 GATGTACTCCCTCCGTTCGAA 59.253 52.381 0.00 0.00 0.00 3.71
1885 6726 1.340308 TGATGTACTCCCTCCGTTCGA 60.340 52.381 0.00 0.00 0.00 3.71
1886 6727 1.065701 CTGATGTACTCCCTCCGTTCG 59.934 57.143 0.00 0.00 0.00 3.95
1887 6728 2.100989 ACTGATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
1888 6729 2.233305 ACTGATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
1889 6730 2.423088 CCTACTGATGTACTCCCTCCGT 60.423 54.545 0.00 0.00 0.00 4.69
1890 6731 2.158652 TCCTACTGATGTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
1891 6732 3.596940 TCCTACTGATGTACTCCCTCC 57.403 52.381 0.00 0.00 0.00 4.30
1892 6733 4.957327 AGTTTCCTACTGATGTACTCCCTC 59.043 45.833 0.00 0.00 35.19 4.30
1893 6734 4.949121 AGTTTCCTACTGATGTACTCCCT 58.051 43.478 0.00 0.00 35.19 4.20
1894 6735 5.420409 CAAGTTTCCTACTGATGTACTCCC 58.580 45.833 0.00 0.00 37.12 4.30
1895 6736 5.187186 TCCAAGTTTCCTACTGATGTACTCC 59.813 44.000 0.00 0.00 37.12 3.85
1896 6737 6.100668 GTCCAAGTTTCCTACTGATGTACTC 58.899 44.000 0.00 0.00 37.12 2.59
1913 6754 5.367937 ACTTATAGCCATCTGATGTCCAAGT 59.632 40.000 15.95 13.19 0.00 3.16
1914 6755 5.862845 ACTTATAGCCATCTGATGTCCAAG 58.137 41.667 15.95 12.67 0.00 3.61
1916 6757 5.481824 CCTACTTATAGCCATCTGATGTCCA 59.518 44.000 15.95 0.00 0.00 4.02
1919 6760 7.291182 AGTTTCCTACTTATAGCCATCTGATGT 59.709 37.037 15.95 1.75 31.29 3.06
1920 6761 7.675062 AGTTTCCTACTTATAGCCATCTGATG 58.325 38.462 10.71 10.71 31.29 3.07
1921 6762 7.863901 AGTTTCCTACTTATAGCCATCTGAT 57.136 36.000 0.00 0.00 31.29 2.90
1922 6763 7.419057 CCAAGTTTCCTACTTATAGCCATCTGA 60.419 40.741 0.00 0.00 45.29 3.27
1923 6764 6.708054 CCAAGTTTCCTACTTATAGCCATCTG 59.292 42.308 0.00 0.00 45.29 2.90
1924 6765 6.615726 TCCAAGTTTCCTACTTATAGCCATCT 59.384 38.462 0.00 0.00 45.29 2.90
1925 6766 6.827727 TCCAAGTTTCCTACTTATAGCCATC 58.172 40.000 0.00 0.00 45.29 3.51
1926 6767 6.824958 TCCAAGTTTCCTACTTATAGCCAT 57.175 37.500 0.00 0.00 45.29 4.40
1927 6768 6.824958 ATCCAAGTTTCCTACTTATAGCCA 57.175 37.500 0.00 0.00 45.29 4.75
1928 6769 7.442666 CAGAATCCAAGTTTCCTACTTATAGCC 59.557 40.741 0.00 0.00 45.29 3.93
1929 6770 7.988028 ACAGAATCCAAGTTTCCTACTTATAGC 59.012 37.037 0.00 0.00 45.29 2.97
1932 6773 9.838339 CATACAGAATCCAAGTTTCCTACTTAT 57.162 33.333 0.00 0.00 45.29 1.73
1933 6774 8.822805 ACATACAGAATCCAAGTTTCCTACTTA 58.177 33.333 0.00 0.00 45.29 2.24
1935 6776 7.259088 ACATACAGAATCCAAGTTTCCTACT 57.741 36.000 0.00 0.00 39.32 2.57
1936 6777 6.539103 GGACATACAGAATCCAAGTTTCCTAC 59.461 42.308 0.00 0.00 32.35 3.18
1937 6778 6.629515 CGGACATACAGAATCCAAGTTTCCTA 60.630 42.308 0.00 0.00 32.35 2.94
1938 6779 5.501156 GGACATACAGAATCCAAGTTTCCT 58.499 41.667 0.00 0.00 32.35 3.36
1939 6780 4.332819 CGGACATACAGAATCCAAGTTTCC 59.667 45.833 0.00 0.00 32.35 3.13
1940 6781 4.332819 CCGGACATACAGAATCCAAGTTTC 59.667 45.833 0.00 0.00 32.35 2.78
1941 6782 4.019681 TCCGGACATACAGAATCCAAGTTT 60.020 41.667 0.00 0.00 32.35 2.66
1942 6783 3.517901 TCCGGACATACAGAATCCAAGTT 59.482 43.478 0.00 0.00 32.35 2.66
1943 6784 3.104512 TCCGGACATACAGAATCCAAGT 58.895 45.455 0.00 0.00 32.35 3.16
1944 6785 3.819564 TCCGGACATACAGAATCCAAG 57.180 47.619 0.00 0.00 32.35 3.61
1945 6786 4.262463 GCTATCCGGACATACAGAATCCAA 60.262 45.833 6.12 0.00 32.35 3.53
1946 6787 3.258372 GCTATCCGGACATACAGAATCCA 59.742 47.826 6.12 0.00 32.35 3.41
1947 6788 3.511934 AGCTATCCGGACATACAGAATCC 59.488 47.826 6.12 0.00 0.00 3.01
1948 6789 4.792521 AGCTATCCGGACATACAGAATC 57.207 45.455 6.12 0.00 0.00 2.52
1949 6790 5.952347 TGATAGCTATCCGGACATACAGAAT 59.048 40.000 27.08 0.00 31.71 2.40
1955 6796 4.023291 TGCATGATAGCTATCCGGACATA 58.977 43.478 27.08 10.19 34.99 2.29
1961 6802 4.966249 CACATTTGCATGATAGCTATCCG 58.034 43.478 27.08 19.83 34.11 4.18
1995 6836 8.768501 TGAACATGGTGAGAAGTATACTATCT 57.231 34.615 5.65 10.92 0.00 1.98
1996 6837 8.085296 CCTGAACATGGTGAGAAGTATACTATC 58.915 40.741 5.65 8.30 0.00 2.08
1997 6838 7.785028 TCCTGAACATGGTGAGAAGTATACTAT 59.215 37.037 5.65 0.00 0.00 2.12
1999 6840 5.958380 TCCTGAACATGGTGAGAAGTATACT 59.042 40.000 0.00 0.00 0.00 2.12
2000 6841 6.043411 GTCCTGAACATGGTGAGAAGTATAC 58.957 44.000 0.00 0.00 0.00 1.47
2001 6842 5.958380 AGTCCTGAACATGGTGAGAAGTATA 59.042 40.000 0.00 0.00 0.00 1.47
2029 9566 4.307443 TGCGTATCAGATGAAGGTACTG 57.693 45.455 0.00 0.00 40.86 2.74
2047 9584 3.827625 TGGACAAAAATAAACGGATGCG 58.172 40.909 4.58 4.58 0.00 4.73
2050 9587 5.659440 AGCATGGACAAAAATAAACGGAT 57.341 34.783 0.00 0.00 0.00 4.18
2061 9598 3.691118 GCAGTCTGATAAGCATGGACAAA 59.309 43.478 3.32 0.00 0.00 2.83
2099 9636 2.100989 GAGGATCGTGTAGTTCTGGGT 58.899 52.381 0.00 0.00 0.00 4.51
2113 9650 3.988379 TTGCACTTGTTTGTGAGGATC 57.012 42.857 0.00 0.00 40.12 3.36
2117 9654 2.813061 CCCTTTGCACTTGTTTGTGAG 58.187 47.619 0.00 0.00 40.12 3.51
2124 9661 0.975040 TTGTGGCCCTTTGCACTTGT 60.975 50.000 0.00 0.00 43.89 3.16
2127 9664 1.256812 GTATTGTGGCCCTTTGCACT 58.743 50.000 0.00 0.00 43.89 4.40
2146 9683 4.096984 GCTTCACAACATTCATTAGGAGGG 59.903 45.833 0.00 0.00 0.00 4.30
2155 9692 4.644234 TCCTTGAAAGCTTCACAACATTCA 59.356 37.500 0.00 0.00 39.87 2.57
2167 9704 3.332034 GCATGCAAATTCCTTGAAAGCT 58.668 40.909 14.21 0.00 37.17 3.74
2388 9925 1.066573 AGAGAGCGACCAAAGGATGTG 60.067 52.381 0.00 0.00 0.00 3.21
2500 10040 6.260050 GCAAATGAATCCTAATCGTTGGTAGA 59.740 38.462 0.00 0.00 0.00 2.59
2549 10093 5.999205 AGCCAATGTCCAATCACAATTAA 57.001 34.783 0.00 0.00 0.00 1.40
2550 10094 5.479724 TGAAGCCAATGTCCAATCACAATTA 59.520 36.000 0.00 0.00 0.00 1.40
2551 10095 4.283978 TGAAGCCAATGTCCAATCACAATT 59.716 37.500 0.00 0.00 0.00 2.32
2552 10096 3.833650 TGAAGCCAATGTCCAATCACAAT 59.166 39.130 0.00 0.00 0.00 2.71
2573 10117 8.759641 GCAATAGAACATCTACTGTCAAGTATG 58.240 37.037 0.00 0.00 38.23 2.39
2582 10156 9.404348 CATACTACAGCAATAGAACATCTACTG 57.596 37.037 1.56 0.00 30.79 2.74
2584 10158 7.329717 GGCATACTACAGCAATAGAACATCTAC 59.670 40.741 1.56 0.00 30.79 2.59
2601 10175 8.726870 TGTTCTATAACAAAAGGGCATACTAC 57.273 34.615 0.00 0.00 42.60 2.73
2620 10195 7.661027 TGAATGTCAAGATGTCATGTTGTTCTA 59.339 33.333 19.11 7.61 35.29 2.10
2673 10248 2.813754 GTGTGCACTCTGCCAATAGAAA 59.186 45.455 19.41 0.00 44.23 2.52
2675 10250 1.339055 GGTGTGCACTCTGCCAATAGA 60.339 52.381 19.41 0.00 44.23 1.98
2684 10259 6.663093 TGATTTATAATTTGGGTGTGCACTCT 59.337 34.615 19.41 0.00 31.68 3.24
2741 10317 8.655970 CAGATGAACACACGATTATCACTTTAA 58.344 33.333 0.00 0.00 0.00 1.52
2742 10318 7.201522 GCAGATGAACACACGATTATCACTTTA 60.202 37.037 0.00 0.00 0.00 1.85
2743 10319 6.402550 GCAGATGAACACACGATTATCACTTT 60.403 38.462 0.00 0.00 0.00 2.66
2768 11535 3.192001 ACAAGAACATGGCAATGCAGTAG 59.808 43.478 7.79 0.00 37.29 2.57
2814 11584 3.610637 CTGGAACGGGGAAAACGTA 57.389 52.632 0.00 0.00 44.83 3.57
2825 11595 5.475719 TCAATTGAAGTACTACCTGGAACG 58.524 41.667 5.45 0.00 0.00 3.95
2841 11611 4.568359 GCTCTAAGACGCAATCTCAATTGA 59.432 41.667 8.12 8.12 44.25 2.57
2846 11616 3.808466 ATGCTCTAAGACGCAATCTCA 57.192 42.857 0.00 0.00 39.89 3.27
2915 11686 2.922335 GCAATCCTGCCTTTTCGTCAAC 60.922 50.000 0.00 0.00 43.26 3.18
2935 11706 1.916000 CTAAGCGCAATGAAAAGCAGC 59.084 47.619 11.47 0.00 0.00 5.25
2995 11766 7.259088 ACTATATGATCTAAACCACCCCATC 57.741 40.000 0.00 0.00 0.00 3.51
3131 12296 6.229733 CAGAGTTCTCAGAAATTCTTCCTGT 58.770 40.000 0.00 0.00 31.28 4.00
3321 13936 4.095632 GCTGACTAAAGGAAGAGAATTGCC 59.904 45.833 0.00 0.00 0.00 4.52
3358 13973 2.042979 AGCCAGGAAAAATTAGGAGCCA 59.957 45.455 0.00 0.00 0.00 4.75
3359 13974 2.690497 GAGCCAGGAAAAATTAGGAGCC 59.310 50.000 0.00 0.00 0.00 4.70
3368 13983 0.472471 AGTGACGGAGCCAGGAAAAA 59.528 50.000 0.00 0.00 0.00 1.94
3369 13984 0.250295 CAGTGACGGAGCCAGGAAAA 60.250 55.000 0.00 0.00 0.00 2.29
3370 13985 1.371183 CAGTGACGGAGCCAGGAAA 59.629 57.895 0.00 0.00 0.00 3.13
3371 13986 1.407656 AACAGTGACGGAGCCAGGAA 61.408 55.000 0.00 0.00 0.00 3.36
3372 13987 1.407656 AAACAGTGACGGAGCCAGGA 61.408 55.000 0.00 0.00 0.00 3.86
3373 13988 0.320374 TAAACAGTGACGGAGCCAGG 59.680 55.000 0.00 0.00 0.00 4.45
3374 13989 1.272490 TCTAAACAGTGACGGAGCCAG 59.728 52.381 0.00 0.00 0.00 4.85
3375 13990 1.272490 CTCTAAACAGTGACGGAGCCA 59.728 52.381 0.00 0.00 0.00 4.75
3376 13991 1.997669 CTCTAAACAGTGACGGAGCC 58.002 55.000 0.00 0.00 0.00 4.70
3377 13992 1.336887 TGCTCTAAACAGTGACGGAGC 60.337 52.381 17.85 17.85 44.16 4.70
3378 13993 2.724977 TGCTCTAAACAGTGACGGAG 57.275 50.000 0.00 0.22 0.00 4.63
3379 13994 2.826128 AGATGCTCTAAACAGTGACGGA 59.174 45.455 0.00 0.00 0.00 4.69
3380 13995 3.182967 GAGATGCTCTAAACAGTGACGG 58.817 50.000 0.00 0.00 0.00 4.79
3381 13996 3.182967 GGAGATGCTCTAAACAGTGACG 58.817 50.000 0.00 0.00 0.00 4.35
3382 13997 4.193826 TGGAGATGCTCTAAACAGTGAC 57.806 45.455 0.00 0.00 0.00 3.67
3383 13998 4.040339 TGTTGGAGATGCTCTAAACAGTGA 59.960 41.667 0.00 0.00 34.64 3.41
3384 13999 4.318332 TGTTGGAGATGCTCTAAACAGTG 58.682 43.478 10.18 0.00 34.64 3.66
3385 14000 4.623932 TGTTGGAGATGCTCTAAACAGT 57.376 40.909 10.18 0.00 34.64 3.55
3386 14001 4.201891 GCATGTTGGAGATGCTCTAAACAG 60.202 45.833 15.76 11.36 42.52 3.16
3387 14002 3.691118 GCATGTTGGAGATGCTCTAAACA 59.309 43.478 14.10 14.10 42.52 2.83
3388 14003 3.242543 CGCATGTTGGAGATGCTCTAAAC 60.243 47.826 8.18 0.00 43.45 2.01
3389 14004 2.938451 CGCATGTTGGAGATGCTCTAAA 59.062 45.455 8.18 0.00 43.45 1.85
3390 14005 2.093500 ACGCATGTTGGAGATGCTCTAA 60.093 45.455 8.18 0.00 43.45 2.10
3391 14006 1.482182 ACGCATGTTGGAGATGCTCTA 59.518 47.619 8.18 0.00 43.45 2.43
3392 14007 0.251354 ACGCATGTTGGAGATGCTCT 59.749 50.000 8.18 0.00 43.45 4.09
3393 14008 0.376152 CACGCATGTTGGAGATGCTC 59.624 55.000 8.18 0.00 43.45 4.26
3394 14009 1.651240 GCACGCATGTTGGAGATGCT 61.651 55.000 8.18 0.00 43.45 3.79
3395 14010 1.226491 GCACGCATGTTGGAGATGC 60.226 57.895 0.00 0.00 42.41 3.91
3396 14011 0.522626 TTGCACGCATGTTGGAGATG 59.477 50.000 0.00 0.00 0.00 2.90
3397 14012 0.523072 GTTGCACGCATGTTGGAGAT 59.477 50.000 0.00 0.00 0.00 2.75
3398 14013 1.840630 CGTTGCACGCATGTTGGAGA 61.841 55.000 0.00 0.00 33.65 3.71
3399 14014 1.440850 CGTTGCACGCATGTTGGAG 60.441 57.895 0.00 0.00 33.65 3.86
3400 14015 2.636462 CGTTGCACGCATGTTGGA 59.364 55.556 0.00 0.00 33.65 3.53
3416 14031 4.591852 TTTTTAACGCACCGCACG 57.408 50.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.