Multiple sequence alignment - TraesCS3B01G549500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G549500 chr3B 100.000 2164 0 0 1 2164 784721313 784723476 0.000000e+00 3997
1 TraesCS3B01G549500 chr3B 100.000 454 0 0 2507 2960 784723819 784724272 0.000000e+00 839
2 TraesCS3B01G549500 chr3D 89.301 1860 118 39 349 2164 587533770 587535592 0.000000e+00 2257
3 TraesCS3B01G549500 chr3D 88.679 106 10 2 1 105 587531563 587531667 8.610000e-26 128
4 TraesCS3B01G549500 chr3A 87.434 1711 123 37 489 2164 716877692 716879345 0.000000e+00 1884
5 TraesCS3B01G549500 chr3A 93.370 181 10 1 2779 2957 42322602 42322782 1.750000e-67 267
6 TraesCS3B01G549500 chr3A 87.368 190 10 7 68 256 716876951 716877127 3.870000e-49 206
7 TraesCS3B01G549500 chr3A 84.971 173 16 6 305 470 716877266 716877435 1.820000e-37 167
8 TraesCS3B01G549500 chr2A 79.412 714 91 35 1308 2015 56432122 56432785 1.250000e-123 453
9 TraesCS3B01G549500 chr7D 83.598 378 50 10 1644 2015 15454718 15455089 7.850000e-91 344
10 TraesCS3B01G549500 chr7B 92.973 185 13 0 2769 2953 614421133 614421317 1.350000e-68 270
11 TraesCS3B01G549500 chr7B 87.766 188 18 5 2771 2957 225061401 225061218 6.430000e-52 215
12 TraesCS3B01G549500 chr7A 81.020 353 41 12 1465 1817 104156966 104156640 1.050000e-64 257
13 TraesCS3B01G549500 chr1B 91.053 190 15 2 2769 2957 261060488 261060676 3.790000e-64 255
14 TraesCS3B01G549500 chrUn 89.320 206 8 4 2769 2960 131959292 131959087 2.280000e-61 246
15 TraesCS3B01G549500 chr5D 89.899 198 8 4 2769 2957 31324588 31324782 8.200000e-61 244
16 TraesCS3B01G549500 chr5B 89.583 192 15 1 2771 2957 163551460 163551651 3.810000e-59 239
17 TraesCS3B01G549500 chr5B 88.384 198 11 4 2769 2957 600895395 600895589 8.250000e-56 228
18 TraesCS3B01G549500 chr4A 82.609 276 36 9 1687 1954 689542359 689542630 1.770000e-57 233
19 TraesCS3B01G549500 chr4B 88.205 195 18 1 2771 2960 79436863 79436669 8.250000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G549500 chr3B 784721313 784724272 2959 False 2418.000000 3997 100.000 1 2960 2 chr3B.!!$F1 2959
1 TraesCS3B01G549500 chr3D 587531563 587535592 4029 False 1192.500000 2257 88.990 1 2164 2 chr3D.!!$F1 2163
2 TraesCS3B01G549500 chr3A 716876951 716879345 2394 False 752.333333 1884 86.591 68 2164 3 chr3A.!!$F2 2096
3 TraesCS3B01G549500 chr2A 56432122 56432785 663 False 453.000000 453 79.412 1308 2015 1 chr2A.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 3142 0.248565 GTCAAACCCCCGTCCTAGTC 59.751 60.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2706 4922 0.040958 GCAACCACAAAGCGACAGAG 60.041 55.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.162408 GAGAACTATGCCAAGTTGCACC 59.838 50.000 5.58 0.00 45.48 5.01
51 52 1.885887 TCACCAAACATGCTACTTGGC 59.114 47.619 13.54 0.00 42.88 4.52
52 53 1.067635 CACCAAACATGCTACTTGGCC 60.068 52.381 13.54 0.00 42.88 5.36
55 56 1.595093 AAACATGCTACTTGGCCGGC 61.595 55.000 21.18 21.18 0.00 6.13
101 102 5.529430 TGGTCACGTCATGTTAAGAACAAAT 59.471 36.000 0.00 0.00 45.86 2.32
102 103 6.706716 TGGTCACGTCATGTTAAGAACAAATA 59.293 34.615 0.00 0.00 45.86 1.40
103 104 7.095397 TGGTCACGTCATGTTAAGAACAAATAG 60.095 37.037 0.00 0.00 45.86 1.73
104 105 7.095355 GGTCACGTCATGTTAAGAACAAATAGT 60.095 37.037 0.00 0.00 45.86 2.12
105 106 8.918658 GTCACGTCATGTTAAGAACAAATAGTA 58.081 33.333 0.00 0.00 45.86 1.82
106 107 9.647797 TCACGTCATGTTAAGAACAAATAGTAT 57.352 29.630 0.00 0.00 45.86 2.12
107 108 9.689075 CACGTCATGTTAAGAACAAATAGTATG 57.311 33.333 0.00 0.00 45.86 2.39
108 109 9.647797 ACGTCATGTTAAGAACAAATAGTATGA 57.352 29.630 0.00 0.00 45.86 2.15
117 1940 7.602517 AGAACAAATAGTATGACTTGTGCTC 57.397 36.000 2.06 0.00 33.20 4.26
126 1949 6.520272 AGTATGACTTGTGCTCATTATCCTC 58.480 40.000 0.00 0.00 30.76 3.71
148 1971 6.061231 TCTCGAAAAAGGAAGAAGAAAAGC 57.939 37.500 0.00 0.00 0.00 3.51
168 1991 5.565455 AGCTAGTCCGTAGTAGGAGTATT 57.435 43.478 1.53 0.00 43.19 1.89
171 1994 6.269769 AGCTAGTCCGTAGTAGGAGTATTACT 59.730 42.308 0.00 0.00 43.19 2.24
172 1995 7.453126 AGCTAGTCCGTAGTAGGAGTATTACTA 59.547 40.741 0.00 0.00 43.19 1.82
202 2025 2.038659 TGGCCAAAACCAAGAAGGAAG 58.961 47.619 0.61 0.00 41.22 3.46
213 2036 2.037385 AGAAGGAAGGAGGCTGAACT 57.963 50.000 0.00 0.00 0.00 3.01
256 2079 3.558411 GCTGACGATGCGCTGGTC 61.558 66.667 9.73 13.64 33.51 4.02
267 2104 1.882989 GCGCTGGTCCAGAGAGAACT 61.883 60.000 25.23 0.00 33.20 3.01
269 2106 0.390998 GCTGGTCCAGAGAGAACTGC 60.391 60.000 23.77 0.16 40.54 4.40
285 2122 1.077787 TGCCGGCAACAGGATTAGG 60.078 57.895 30.74 0.00 32.87 2.69
287 2124 1.095807 GCCGGCAACAGGATTAGGTC 61.096 60.000 24.80 0.00 32.87 3.85
291 2128 1.291132 GCAACAGGATTAGGTCGAGC 58.709 55.000 6.48 6.48 0.00 5.03
293 2130 0.460311 AACAGGATTAGGTCGAGCGG 59.540 55.000 9.28 0.00 0.00 5.52
294 2131 1.364171 CAGGATTAGGTCGAGCGGG 59.636 63.158 9.28 0.00 0.00 6.13
295 2132 2.029221 GGATTAGGTCGAGCGGGC 59.971 66.667 9.28 0.27 0.00 6.13
297 2134 1.367840 GATTAGGTCGAGCGGGCAT 59.632 57.895 9.28 0.00 0.00 4.40
338 2251 3.065095 GCTCCTCATTTTGCTCTAGCTTG 59.935 47.826 3.26 0.00 42.66 4.01
345 2258 1.800805 TTGCTCTAGCTTGTGACTGC 58.199 50.000 3.26 0.00 42.66 4.40
356 2269 0.609406 TGTGACTGCTCTAGCCGAGT 60.609 55.000 0.00 0.00 41.98 4.18
371 2291 0.385473 CGAGTGCCGCGTTTCAAAAT 60.385 50.000 4.92 0.00 0.00 1.82
375 2295 3.908213 AGTGCCGCGTTTCAAAATAAAT 58.092 36.364 4.92 0.00 0.00 1.40
379 2299 6.588373 AGTGCCGCGTTTCAAAATAAATAAAT 59.412 30.769 4.92 0.00 0.00 1.40
482 2411 2.961721 CACGCACGCGCAGGATAT 60.962 61.111 12.02 0.00 44.19 1.63
483 2412 2.961721 ACGCACGCGCAGGATATG 60.962 61.111 12.02 0.00 44.19 1.78
523 2694 2.181021 GTCGGTGCCGTAGACTGG 59.819 66.667 10.60 0.00 40.74 4.00
533 2704 0.382515 CGTAGACTGGAGCAGTAGCC 59.617 60.000 0.00 0.00 45.44 3.93
542 2715 2.179267 GCAGTAGCCGGCAAAAGC 59.821 61.111 31.54 22.74 33.58 3.51
547 2720 2.040544 TAGCCGGCAAAAGCAGAGC 61.041 57.895 31.54 0.00 0.00 4.09
587 2760 1.626356 CGATGTGGGTGGATCCAGGT 61.626 60.000 16.81 0.00 37.50 4.00
671 2858 3.649277 CTGGCCACGAGGGAGAACG 62.649 68.421 0.00 0.00 40.01 3.95
679 2866 1.140407 CGAGGGAGAACGATTCGCAC 61.140 60.000 5.86 0.44 32.61 5.34
683 2870 1.404315 GGGAGAACGATTCGCACTTCT 60.404 52.381 5.86 7.98 29.58 2.85
709 2907 4.760220 ACTGCCCCCACCCCCTAG 62.760 72.222 0.00 0.00 0.00 3.02
717 2915 1.427072 CCCACCCCCTAGCCCAATAG 61.427 65.000 0.00 0.00 0.00 1.73
718 2916 1.456287 CACCCCCTAGCCCAATAGC 59.544 63.158 0.00 0.00 0.00 2.97
757 2966 1.609794 GGAACCACTCCCGTCTCCT 60.610 63.158 0.00 0.00 38.44 3.69
758 2967 1.605971 GGAACCACTCCCGTCTCCTC 61.606 65.000 0.00 0.00 38.44 3.71
767 2976 2.513204 CGTCTCCTCGGCCGTCTA 60.513 66.667 27.15 10.46 0.00 2.59
776 2985 1.804326 CGGCCGTCTACTTTGACCG 60.804 63.158 19.50 0.00 33.70 4.79
864 3073 2.417936 GGAAGGCCGATCGAGGAC 59.582 66.667 18.66 2.21 40.48 3.85
865 3074 2.417936 GAAGGCCGATCGAGGACC 59.582 66.667 18.66 12.20 41.33 4.46
928 3137 2.350134 GAGGTCAAACCCCCGTCC 59.650 66.667 0.00 0.00 39.75 4.79
929 3138 2.122099 AGGTCAAACCCCCGTCCT 60.122 61.111 0.00 0.00 39.75 3.85
930 3139 0.906282 GAGGTCAAACCCCCGTCCTA 60.906 60.000 0.00 0.00 39.75 2.94
931 3140 0.908180 AGGTCAAACCCCCGTCCTAG 60.908 60.000 0.00 0.00 39.75 3.02
932 3141 1.196766 GGTCAAACCCCCGTCCTAGT 61.197 60.000 0.00 0.00 30.04 2.57
933 3142 0.248565 GTCAAACCCCCGTCCTAGTC 59.751 60.000 0.00 0.00 0.00 2.59
999 3210 2.573869 CTCAGATCCACACGCCGT 59.426 61.111 0.00 0.00 0.00 5.68
1001 3212 0.248661 CTCAGATCCACACGCCGTAG 60.249 60.000 0.00 0.00 0.00 3.51
1034 3245 2.503061 CCCACCCAGCTCATCTCG 59.497 66.667 0.00 0.00 0.00 4.04
1040 3251 0.820226 CCCAGCTCATCTCGTCTCAA 59.180 55.000 0.00 0.00 0.00 3.02
1049 3260 1.095600 TCTCGTCTCAATCTCACCCG 58.904 55.000 0.00 0.00 0.00 5.28
1055 3266 2.494073 GTCTCAATCTCACCCGTCTCTT 59.506 50.000 0.00 0.00 0.00 2.85
1062 3273 0.898789 TCACCCGTCTCTTCCTCCAC 60.899 60.000 0.00 0.00 0.00 4.02
1089 3300 3.191539 GCTTCTCGAAGGCAGGCG 61.192 66.667 8.59 0.00 38.80 5.52
1104 3315 0.461961 AGGCGCCATACACTTCTCTC 59.538 55.000 31.54 0.00 0.00 3.20
1141 3352 2.343758 GCTGTCTCCCTGCGTGAA 59.656 61.111 0.00 0.00 0.00 3.18
1223 3434 2.580867 GCGCTGCCAGTCTACGAG 60.581 66.667 0.00 0.00 0.00 4.18
1235 3446 1.224039 CTACGAGGACGAGGAGGGT 59.776 63.158 0.00 0.00 42.66 4.34
1238 3449 1.454111 CGAGGACGAGGAGGGTGAT 60.454 63.158 0.00 0.00 42.66 3.06
1849 4061 2.610833 TGCTGCTCTCTTCGCAATAATG 59.389 45.455 0.00 0.00 36.88 1.90
1866 4078 7.423598 CGCAATAATGTAATTAGCTAATGAGCG 59.576 37.037 19.53 16.10 45.48 5.03
1996 4211 9.828852 TTTGTCGAAAACATTTACATATGTACC 57.171 29.630 15.20 0.00 37.76 3.34
2011 4226 8.980481 ACATATGTACCTAGGATTTTTGGAAG 57.020 34.615 17.98 0.00 0.00 3.46
2051 4266 0.317479 CACCCTCTCTCGTTTCCGTT 59.683 55.000 0.00 0.00 35.01 4.44
2052 4267 1.046204 ACCCTCTCTCGTTTCCGTTT 58.954 50.000 0.00 0.00 35.01 3.60
2053 4268 1.000618 ACCCTCTCTCGTTTCCGTTTC 59.999 52.381 0.00 0.00 35.01 2.78
2054 4269 1.672145 CCCTCTCTCGTTTCCGTTTCC 60.672 57.143 0.00 0.00 35.01 3.13
2055 4270 1.337821 CTCTCTCGTTTCCGTTTCCG 58.662 55.000 0.00 0.00 35.01 4.30
2056 4271 0.670162 TCTCTCGTTTCCGTTTCCGT 59.330 50.000 0.00 0.00 35.01 4.69
2071 4286 0.611618 TCCGTAAACTGACCGGGCTA 60.612 55.000 9.82 0.00 41.98 3.93
2074 4289 1.407979 CGTAAACTGACCGGGCTATCT 59.592 52.381 9.82 0.00 0.00 1.98
2088 4304 2.346803 GCTATCTGCCTGAACGTTTGA 58.653 47.619 0.46 0.00 35.15 2.69
2093 4309 0.179234 TGCCTGAACGTTTGAGGTCA 59.821 50.000 21.86 17.98 0.00 4.02
2101 4317 5.361427 TGAACGTTTGAGGTCAGTTTATGA 58.639 37.500 0.46 0.00 34.79 2.15
2106 4322 5.552178 GTTTGAGGTCAGTTTATGAGTCCT 58.448 41.667 0.00 0.00 39.07 3.85
2110 4326 5.153950 AGGTCAGTTTATGAGTCCTGTTC 57.846 43.478 0.00 0.00 39.07 3.18
2126 4342 8.052621 AGTCCTGTTCTAGATACTCTTAGGAT 57.947 38.462 0.00 0.00 34.65 3.24
2132 4348 9.967451 TGTTCTAGATACTCTTAGGATATCCAG 57.033 37.037 23.81 14.08 38.89 3.86
2523 4739 4.157817 CAAAGCTTGCATCGCCAC 57.842 55.556 0.00 0.00 0.00 5.01
2524 4740 1.444895 CAAAGCTTGCATCGCCACC 60.445 57.895 0.00 0.00 0.00 4.61
2525 4741 1.902918 AAAGCTTGCATCGCCACCA 60.903 52.632 0.00 0.00 0.00 4.17
2526 4742 2.146073 AAAGCTTGCATCGCCACCAC 62.146 55.000 0.00 0.00 0.00 4.16
2527 4743 4.120331 GCTTGCATCGCCACCACC 62.120 66.667 0.00 0.00 0.00 4.61
2528 4744 2.672651 CTTGCATCGCCACCACCA 60.673 61.111 0.00 0.00 0.00 4.17
2529 4745 2.672651 TTGCATCGCCACCACCAG 60.673 61.111 0.00 0.00 0.00 4.00
2530 4746 3.189376 TTGCATCGCCACCACCAGA 62.189 57.895 0.00 0.00 0.00 3.86
2531 4747 2.124570 GCATCGCCACCACCAGAT 60.125 61.111 0.00 0.00 0.00 2.90
2532 4748 1.750399 GCATCGCCACCACCAGATT 60.750 57.895 0.00 0.00 0.00 2.40
2533 4749 1.996786 GCATCGCCACCACCAGATTG 61.997 60.000 0.00 0.00 0.00 2.67
2534 4750 1.077501 ATCGCCACCACCAGATTGG 60.078 57.895 0.00 0.00 45.02 3.16
2537 4753 2.362889 CCACCACCAGATTGGCCC 60.363 66.667 0.00 0.00 42.67 5.80
2538 4754 2.362889 CACCACCAGATTGGCCCC 60.363 66.667 0.00 0.00 42.67 5.80
2539 4755 2.535317 ACCACCAGATTGGCCCCT 60.535 61.111 0.00 0.00 42.67 4.79
2540 4756 2.043652 CCACCAGATTGGCCCCTG 60.044 66.667 0.00 5.01 42.67 4.45
2541 4757 2.757099 CACCAGATTGGCCCCTGC 60.757 66.667 0.00 0.00 42.67 4.85
2542 4758 3.267233 ACCAGATTGGCCCCTGCA 61.267 61.111 0.00 0.00 42.67 4.41
2543 4759 2.441532 CCAGATTGGCCCCTGCAG 60.442 66.667 6.78 6.78 40.13 4.41
2544 4760 3.145551 CAGATTGGCCCCTGCAGC 61.146 66.667 8.66 0.00 40.13 5.25
2545 4761 3.664888 AGATTGGCCCCTGCAGCA 61.665 61.111 8.66 0.00 40.13 4.41
2546 4762 2.443390 GATTGGCCCCTGCAGCAT 60.443 61.111 8.66 0.00 40.13 3.79
2547 4763 2.762459 ATTGGCCCCTGCAGCATG 60.762 61.111 8.66 0.00 40.13 4.06
2548 4764 3.612115 ATTGGCCCCTGCAGCATGT 62.612 57.895 8.66 0.00 39.31 3.21
2558 4774 2.483745 CAGCATGTGCAAGGCGAG 59.516 61.111 7.83 0.00 45.16 5.03
2559 4775 2.036571 CAGCATGTGCAAGGCGAGA 61.037 57.895 7.83 0.00 45.16 4.04
2560 4776 1.744368 AGCATGTGCAAGGCGAGAG 60.744 57.895 7.83 0.00 45.16 3.20
2561 4777 2.037136 GCATGTGCAAGGCGAGAGT 61.037 57.895 0.00 0.00 41.59 3.24
2562 4778 1.975363 GCATGTGCAAGGCGAGAGTC 61.975 60.000 0.00 0.00 41.59 3.36
2563 4779 1.446792 ATGTGCAAGGCGAGAGTCG 60.447 57.895 0.00 0.00 43.49 4.18
2583 4799 4.196826 GCGTCGTCAGCATGCGTC 62.197 66.667 13.01 5.91 37.04 5.19
2584 4800 2.504899 CGTCGTCAGCATGCGTCT 60.505 61.111 13.01 0.00 37.04 4.18
2585 4801 2.088763 CGTCGTCAGCATGCGTCTT 61.089 57.895 13.01 0.00 37.04 3.01
2586 4802 1.704582 GTCGTCAGCATGCGTCTTC 59.295 57.895 13.01 1.90 37.04 2.87
2587 4803 1.446099 TCGTCAGCATGCGTCTTCC 60.446 57.895 13.01 0.00 37.04 3.46
2588 4804 2.456119 CGTCAGCATGCGTCTTCCC 61.456 63.158 13.01 0.00 34.76 3.97
2589 4805 1.078848 GTCAGCATGCGTCTTCCCT 60.079 57.895 13.01 0.00 34.76 4.20
2590 4806 1.086634 GTCAGCATGCGTCTTCCCTC 61.087 60.000 13.01 0.00 34.76 4.30
2591 4807 2.169789 CAGCATGCGTCTTCCCTCG 61.170 63.158 13.01 0.00 0.00 4.63
2592 4808 2.125512 GCATGCGTCTTCCCTCGT 60.126 61.111 0.00 0.00 0.00 4.18
2593 4809 1.741770 GCATGCGTCTTCCCTCGTT 60.742 57.895 0.00 0.00 0.00 3.85
2594 4810 1.970917 GCATGCGTCTTCCCTCGTTG 61.971 60.000 0.00 0.00 0.00 4.10
2595 4811 1.741770 ATGCGTCTTCCCTCGTTGC 60.742 57.895 0.00 0.00 0.00 4.17
2596 4812 3.479269 GCGTCTTCCCTCGTTGCG 61.479 66.667 0.00 0.00 0.00 4.85
2597 4813 2.809601 CGTCTTCCCTCGTTGCGG 60.810 66.667 0.00 0.00 0.00 5.69
2598 4814 3.119096 GTCTTCCCTCGTTGCGGC 61.119 66.667 0.00 0.00 0.00 6.53
2599 4815 3.621805 TCTTCCCTCGTTGCGGCA 61.622 61.111 0.00 0.00 0.00 5.69
2600 4816 2.436646 CTTCCCTCGTTGCGGCAT 60.437 61.111 2.28 0.00 0.00 4.40
2601 4817 2.033448 TTCCCTCGTTGCGGCATT 59.967 55.556 2.28 0.00 0.00 3.56
2602 4818 2.257286 CTTCCCTCGTTGCGGCATTG 62.257 60.000 2.28 0.00 0.00 2.82
2603 4819 3.055719 CCCTCGTTGCGGCATTGT 61.056 61.111 2.28 0.00 0.00 2.71
2604 4820 2.480555 CCTCGTTGCGGCATTGTC 59.519 61.111 2.28 0.00 0.00 3.18
2605 4821 2.096406 CTCGTTGCGGCATTGTCG 59.904 61.111 6.24 6.24 0.00 4.35
2614 4830 2.883730 GCATTGTCGCTCGCCGTA 60.884 61.111 0.00 0.00 38.35 4.02
2615 4831 2.860628 GCATTGTCGCTCGCCGTAG 61.861 63.158 0.00 0.00 38.35 3.51
2616 4832 2.582498 ATTGTCGCTCGCCGTAGC 60.582 61.111 0.00 0.00 39.21 3.58
2617 4833 3.064987 ATTGTCGCTCGCCGTAGCT 62.065 57.895 0.00 0.00 40.49 3.32
2618 4834 1.721664 ATTGTCGCTCGCCGTAGCTA 61.722 55.000 6.90 0.00 40.49 3.32
2619 4835 2.052060 GTCGCTCGCCGTAGCTAG 60.052 66.667 0.00 0.00 40.49 3.42
2623 4839 2.640421 CTCGCCGTAGCTAGCCTC 59.360 66.667 12.13 3.77 36.60 4.70
2624 4840 3.243274 CTCGCCGTAGCTAGCCTCG 62.243 68.421 12.13 15.91 36.60 4.63
2625 4841 4.984689 CGCCGTAGCTAGCCTCGC 62.985 72.222 12.13 7.35 36.60 5.03
2626 4842 4.984689 GCCGTAGCTAGCCTCGCG 62.985 72.222 12.13 10.67 35.50 5.87
2627 4843 3.584052 CCGTAGCTAGCCTCGCGT 61.584 66.667 12.13 0.00 0.00 6.01
2628 4844 2.408022 CGTAGCTAGCCTCGCGTT 59.592 61.111 12.13 0.00 0.00 4.84
2629 4845 1.645455 CGTAGCTAGCCTCGCGTTA 59.355 57.895 12.13 0.00 0.00 3.18
2630 4846 0.656786 CGTAGCTAGCCTCGCGTTAC 60.657 60.000 12.13 4.55 0.00 2.50
2631 4847 0.317687 GTAGCTAGCCTCGCGTTACC 60.318 60.000 12.13 0.00 0.00 2.85
2632 4848 0.749091 TAGCTAGCCTCGCGTTACCA 60.749 55.000 12.13 0.00 0.00 3.25
2633 4849 1.067582 GCTAGCCTCGCGTTACCAT 59.932 57.895 5.77 0.00 0.00 3.55
2634 4850 0.529992 GCTAGCCTCGCGTTACCATT 60.530 55.000 5.77 0.00 0.00 3.16
2635 4851 1.488527 CTAGCCTCGCGTTACCATTC 58.511 55.000 5.77 0.00 0.00 2.67
2636 4852 0.103572 TAGCCTCGCGTTACCATTCC 59.896 55.000 5.77 0.00 0.00 3.01
2637 4853 2.522638 GCCTCGCGTTACCATTCCG 61.523 63.158 5.77 0.00 0.00 4.30
2638 4854 1.140161 CCTCGCGTTACCATTCCGA 59.860 57.895 5.77 0.00 0.00 4.55
2639 4855 1.143969 CCTCGCGTTACCATTCCGAC 61.144 60.000 5.77 0.00 0.00 4.79
2640 4856 0.457166 CTCGCGTTACCATTCCGACA 60.457 55.000 5.77 0.00 0.00 4.35
2641 4857 0.457166 TCGCGTTACCATTCCGACAG 60.457 55.000 5.77 0.00 0.00 3.51
2642 4858 0.734942 CGCGTTACCATTCCGACAGT 60.735 55.000 0.00 0.00 0.00 3.55
2643 4859 0.997196 GCGTTACCATTCCGACAGTC 59.003 55.000 0.00 0.00 0.00 3.51
2644 4860 1.265568 CGTTACCATTCCGACAGTCG 58.734 55.000 16.50 16.50 40.07 4.18
2653 4869 3.062466 CGACAGTCGGAGGCCTCA 61.062 66.667 33.29 12.26 36.00 3.86
2654 4870 2.418910 CGACAGTCGGAGGCCTCAT 61.419 63.158 33.29 13.73 36.00 2.90
2655 4871 1.101635 CGACAGTCGGAGGCCTCATA 61.102 60.000 33.29 18.16 36.00 2.15
2656 4872 0.671251 GACAGTCGGAGGCCTCATAG 59.329 60.000 33.29 22.79 0.00 2.23
2657 4873 1.365633 CAGTCGGAGGCCTCATAGC 59.634 63.158 33.29 19.24 0.00 2.97
2658 4874 1.112315 CAGTCGGAGGCCTCATAGCT 61.112 60.000 33.29 21.04 0.00 3.32
2659 4875 0.825840 AGTCGGAGGCCTCATAGCTC 60.826 60.000 33.29 14.33 0.00 4.09
2660 4876 1.531840 TCGGAGGCCTCATAGCTCC 60.532 63.158 33.29 14.81 0.00 4.70
2661 4877 2.925262 CGGAGGCCTCATAGCTCCG 61.925 68.421 33.29 22.60 42.66 4.63
2662 4878 1.834822 GGAGGCCTCATAGCTCCGT 60.835 63.158 33.29 0.00 0.00 4.69
2663 4879 1.403687 GGAGGCCTCATAGCTCCGTT 61.404 60.000 33.29 0.00 0.00 4.44
2664 4880 0.249657 GAGGCCTCATAGCTCCGTTG 60.250 60.000 28.43 0.00 0.00 4.10
2665 4881 1.227674 GGCCTCATAGCTCCGTTGG 60.228 63.158 0.00 0.00 0.00 3.77
2666 4882 1.889573 GCCTCATAGCTCCGTTGGC 60.890 63.158 0.00 0.00 0.00 4.52
2667 4883 1.522092 CCTCATAGCTCCGTTGGCA 59.478 57.895 0.00 0.00 0.00 4.92
2668 4884 0.531532 CCTCATAGCTCCGTTGGCAG 60.532 60.000 0.00 0.00 0.00 4.85
2669 4885 0.531532 CTCATAGCTCCGTTGGCAGG 60.532 60.000 0.00 0.00 0.00 4.85
2670 4886 1.524621 CATAGCTCCGTTGGCAGGG 60.525 63.158 0.00 0.53 0.00 4.45
2671 4887 1.995626 ATAGCTCCGTTGGCAGGGT 60.996 57.895 0.00 0.00 0.00 4.34
2672 4888 1.562672 ATAGCTCCGTTGGCAGGGTT 61.563 55.000 0.00 0.00 0.00 4.11
2673 4889 2.463589 TAGCTCCGTTGGCAGGGTTG 62.464 60.000 0.00 3.34 0.00 3.77
2685 4901 1.608055 CAGGGTTGCAACACTCATCA 58.392 50.000 31.25 0.00 41.69 3.07
2686 4902 1.538512 CAGGGTTGCAACACTCATCAG 59.461 52.381 31.25 16.10 41.69 2.90
2687 4903 0.242017 GGGTTGCAACACTCATCAGC 59.758 55.000 29.55 9.74 0.00 4.26
2688 4904 1.242076 GGTTGCAACACTCATCAGCT 58.758 50.000 29.55 0.00 0.00 4.24
2689 4905 1.610522 GGTTGCAACACTCATCAGCTT 59.389 47.619 29.55 0.00 0.00 3.74
2690 4906 2.813754 GGTTGCAACACTCATCAGCTTA 59.186 45.455 29.55 0.00 0.00 3.09
2691 4907 3.120060 GGTTGCAACACTCATCAGCTTAG 60.120 47.826 29.55 0.00 0.00 2.18
2692 4908 3.407424 TGCAACACTCATCAGCTTAGT 57.593 42.857 0.00 0.00 0.00 2.24
2693 4909 3.329386 TGCAACACTCATCAGCTTAGTC 58.671 45.455 0.00 0.00 0.00 2.59
2694 4910 2.346847 GCAACACTCATCAGCTTAGTCG 59.653 50.000 0.00 0.00 0.00 4.18
2695 4911 2.926200 CAACACTCATCAGCTTAGTCGG 59.074 50.000 0.00 0.00 0.00 4.79
2696 4912 1.134965 ACACTCATCAGCTTAGTCGGC 60.135 52.381 0.00 0.00 0.00 5.54
2697 4913 1.135915 CACTCATCAGCTTAGTCGGCT 59.864 52.381 0.00 0.00 41.07 5.52
2704 4920 1.186200 AGCTTAGTCGGCTGTCATCA 58.814 50.000 0.00 0.00 38.73 3.07
2705 4921 1.550524 AGCTTAGTCGGCTGTCATCAA 59.449 47.619 0.00 0.00 38.73 2.57
2706 4922 1.661112 GCTTAGTCGGCTGTCATCAAC 59.339 52.381 0.00 0.00 0.00 3.18
2707 4923 2.675317 GCTTAGTCGGCTGTCATCAACT 60.675 50.000 0.00 0.00 0.00 3.16
2708 4924 2.941453 TAGTCGGCTGTCATCAACTC 57.059 50.000 0.00 0.00 0.00 3.01
2709 4925 1.261480 AGTCGGCTGTCATCAACTCT 58.739 50.000 0.00 0.00 0.00 3.24
2710 4926 1.067283 AGTCGGCTGTCATCAACTCTG 60.067 52.381 0.00 0.00 0.00 3.35
2711 4927 0.969149 TCGGCTGTCATCAACTCTGT 59.031 50.000 0.00 0.00 0.00 3.41
2712 4928 1.067565 TCGGCTGTCATCAACTCTGTC 60.068 52.381 0.00 0.00 0.00 3.51
2713 4929 1.354040 GGCTGTCATCAACTCTGTCG 58.646 55.000 0.00 0.00 0.00 4.35
2714 4930 0.718343 GCTGTCATCAACTCTGTCGC 59.282 55.000 0.00 0.00 0.00 5.19
2715 4931 1.671261 GCTGTCATCAACTCTGTCGCT 60.671 52.381 0.00 0.00 0.00 4.93
2716 4932 2.681706 CTGTCATCAACTCTGTCGCTT 58.318 47.619 0.00 0.00 0.00 4.68
2717 4933 3.062763 CTGTCATCAACTCTGTCGCTTT 58.937 45.455 0.00 0.00 0.00 3.51
2718 4934 2.802247 TGTCATCAACTCTGTCGCTTTG 59.198 45.455 0.00 0.00 0.00 2.77
2719 4935 2.802816 GTCATCAACTCTGTCGCTTTGT 59.197 45.455 0.00 0.00 0.00 2.83
2720 4936 2.802247 TCATCAACTCTGTCGCTTTGTG 59.198 45.455 0.00 0.00 0.00 3.33
2721 4937 1.581934 TCAACTCTGTCGCTTTGTGG 58.418 50.000 0.00 0.00 0.00 4.17
2722 4938 1.134521 TCAACTCTGTCGCTTTGTGGT 60.135 47.619 0.00 0.00 0.00 4.16
2723 4939 1.670811 CAACTCTGTCGCTTTGTGGTT 59.329 47.619 0.00 0.00 0.00 3.67
2724 4940 1.299541 ACTCTGTCGCTTTGTGGTTG 58.700 50.000 0.00 0.00 0.00 3.77
2725 4941 0.040958 CTCTGTCGCTTTGTGGTTGC 60.041 55.000 0.00 0.00 0.00 4.17
2726 4942 0.746204 TCTGTCGCTTTGTGGTTGCA 60.746 50.000 0.00 0.00 0.00 4.08
2727 4943 0.317269 CTGTCGCTTTGTGGTTGCAG 60.317 55.000 0.00 0.00 0.00 4.41
2728 4944 1.658409 GTCGCTTTGTGGTTGCAGC 60.658 57.895 0.00 0.00 0.00 5.25
2729 4945 1.823470 TCGCTTTGTGGTTGCAGCT 60.823 52.632 0.00 0.00 0.00 4.24
2730 4946 1.370900 CGCTTTGTGGTTGCAGCTC 60.371 57.895 0.00 0.00 0.00 4.09
2731 4947 1.006922 GCTTTGTGGTTGCAGCTCC 60.007 57.895 0.00 0.00 0.00 4.70
2732 4948 1.662044 CTTTGTGGTTGCAGCTCCC 59.338 57.895 0.00 0.00 0.00 4.30
2733 4949 2.133742 CTTTGTGGTTGCAGCTCCCG 62.134 60.000 0.00 0.00 0.00 5.14
2734 4950 4.641645 TGTGGTTGCAGCTCCCGG 62.642 66.667 0.00 0.00 0.00 5.73
2748 4964 2.203209 CCGGGCAGGGATTGTAGC 60.203 66.667 0.00 0.00 35.97 3.58
2749 4965 2.589540 CGGGCAGGGATTGTAGCA 59.410 61.111 0.00 0.00 0.00 3.49
2750 4966 1.819632 CGGGCAGGGATTGTAGCAC 60.820 63.158 0.00 0.00 0.00 4.40
2751 4967 1.302949 GGGCAGGGATTGTAGCACA 59.697 57.895 0.00 0.00 0.00 4.57
2752 4968 1.032114 GGGCAGGGATTGTAGCACAC 61.032 60.000 0.00 0.00 0.00 3.82
2753 4969 0.322456 GGCAGGGATTGTAGCACACA 60.322 55.000 0.00 0.00 34.51 3.72
2754 4970 1.683011 GGCAGGGATTGTAGCACACAT 60.683 52.381 0.00 0.00 36.90 3.21
2755 4971 1.672881 GCAGGGATTGTAGCACACATC 59.327 52.381 0.00 0.00 36.90 3.06
2756 4972 2.681976 GCAGGGATTGTAGCACACATCT 60.682 50.000 0.00 0.00 36.90 2.90
2757 4973 2.941064 CAGGGATTGTAGCACACATCTG 59.059 50.000 0.00 0.00 36.90 2.90
2758 4974 1.672881 GGGATTGTAGCACACATCTGC 59.327 52.381 0.00 0.00 36.90 4.26
2759 4975 1.328680 GGATTGTAGCACACATCTGCG 59.671 52.381 0.00 0.00 42.42 5.18
2760 4976 2.002586 GATTGTAGCACACATCTGCGT 58.997 47.619 0.00 0.00 42.42 5.24
2761 4977 1.877637 TTGTAGCACACATCTGCGTT 58.122 45.000 0.00 0.00 42.42 4.84
2762 4978 1.147473 TGTAGCACACATCTGCGTTG 58.853 50.000 0.00 0.00 42.42 4.10
2763 4979 1.148310 GTAGCACACATCTGCGTTGT 58.852 50.000 0.00 0.00 42.42 3.32
2764 4980 1.126846 GTAGCACACATCTGCGTTGTC 59.873 52.381 0.00 0.00 42.42 3.18
2765 4981 1.154599 GCACACATCTGCGTTGTCG 60.155 57.895 0.00 0.00 40.37 4.35
2766 4982 1.831389 GCACACATCTGCGTTGTCGT 61.831 55.000 0.00 0.00 39.49 4.34
2767 4983 1.414378 CACACATCTGCGTTGTCGTA 58.586 50.000 0.00 0.00 39.49 3.43
2768 4984 1.992667 CACACATCTGCGTTGTCGTAT 59.007 47.619 0.00 0.00 39.49 3.06
2769 4985 1.992667 ACACATCTGCGTTGTCGTATG 59.007 47.619 0.00 0.00 39.49 2.39
2770 4986 0.999406 ACATCTGCGTTGTCGTATGC 59.001 50.000 0.00 0.00 39.49 3.14
2771 4987 1.280982 CATCTGCGTTGTCGTATGCT 58.719 50.000 0.00 0.00 39.49 3.79
2772 4988 2.159296 ACATCTGCGTTGTCGTATGCTA 60.159 45.455 0.00 0.00 39.49 3.49
2773 4989 1.904144 TCTGCGTTGTCGTATGCTAC 58.096 50.000 0.00 0.00 39.49 3.58
2774 4990 1.200484 TCTGCGTTGTCGTATGCTACA 59.800 47.619 0.00 0.00 39.49 2.74
2775 4991 2.159296 TCTGCGTTGTCGTATGCTACAT 60.159 45.455 0.00 0.00 39.49 2.29
2776 4992 2.603110 CTGCGTTGTCGTATGCTACATT 59.397 45.455 0.00 0.00 39.49 2.71
2777 4993 2.997303 TGCGTTGTCGTATGCTACATTT 59.003 40.909 0.00 0.00 39.49 2.32
2778 4994 3.433957 TGCGTTGTCGTATGCTACATTTT 59.566 39.130 0.00 0.00 39.49 1.82
2779 4995 3.778718 GCGTTGTCGTATGCTACATTTTG 59.221 43.478 0.00 0.00 39.49 2.44
2780 4996 4.434989 GCGTTGTCGTATGCTACATTTTGA 60.435 41.667 0.00 0.00 39.49 2.69
2781 4997 5.726688 GCGTTGTCGTATGCTACATTTTGAT 60.727 40.000 0.00 0.00 39.49 2.57
2782 4998 6.247903 CGTTGTCGTATGCTACATTTTGATT 58.752 36.000 0.00 0.00 0.00 2.57
2783 4999 6.740905 CGTTGTCGTATGCTACATTTTGATTT 59.259 34.615 0.00 0.00 0.00 2.17
2784 5000 7.900864 CGTTGTCGTATGCTACATTTTGATTTA 59.099 33.333 0.00 0.00 0.00 1.40
2785 5001 9.210426 GTTGTCGTATGCTACATTTTGATTTAG 57.790 33.333 0.00 0.00 0.00 1.85
2786 5002 8.487313 TGTCGTATGCTACATTTTGATTTAGT 57.513 30.769 0.00 0.00 0.00 2.24
2787 5003 9.589111 TGTCGTATGCTACATTTTGATTTAGTA 57.411 29.630 0.00 0.00 0.00 1.82
2789 5005 9.256477 TCGTATGCTACATTTTGATTTAGTAGG 57.744 33.333 0.00 0.00 34.29 3.18
2790 5006 9.042008 CGTATGCTACATTTTGATTTAGTAGGT 57.958 33.333 0.00 0.00 34.29 3.08
2794 5010 9.953565 TGCTACATTTTGATTTAGTAGGTTAGT 57.046 29.630 0.00 0.00 34.29 2.24
2854 5070 9.959721 AGGCTAGTTGATTTAGTTGATTTAGAA 57.040 29.630 0.00 0.00 0.00 2.10
2855 5071 9.989869 GGCTAGTTGATTTAGTTGATTTAGAAC 57.010 33.333 0.00 0.00 0.00 3.01
2876 5092 8.409358 AGAACATTTTGATTTAGTAGGCAAGT 57.591 30.769 0.00 0.00 0.00 3.16
2877 5093 8.860088 AGAACATTTTGATTTAGTAGGCAAGTT 58.140 29.630 0.00 0.00 0.00 2.66
2878 5094 8.816640 AACATTTTGATTTAGTAGGCAAGTTG 57.183 30.769 0.00 0.00 0.00 3.16
2879 5095 8.177119 ACATTTTGATTTAGTAGGCAAGTTGA 57.823 30.769 7.16 0.00 0.00 3.18
2880 5096 8.806146 ACATTTTGATTTAGTAGGCAAGTTGAT 58.194 29.630 7.16 0.00 0.00 2.57
2881 5097 9.643693 CATTTTGATTTAGTAGGCAAGTTGATT 57.356 29.630 7.16 0.00 0.00 2.57
2885 5101 9.515226 TTGATTTAGTAGGCAAGTTGATTTAGT 57.485 29.630 7.16 1.24 0.00 2.24
2888 5104 9.614792 ATTTAGTAGGCAAGTTGATTTAGTAGG 57.385 33.333 7.16 0.00 0.00 3.18
2889 5105 5.429130 AGTAGGCAAGTTGATTTAGTAGGC 58.571 41.667 7.16 0.00 0.00 3.93
2890 5106 4.576330 AGGCAAGTTGATTTAGTAGGCT 57.424 40.909 7.16 0.00 0.00 4.58
2891 5107 5.693769 AGGCAAGTTGATTTAGTAGGCTA 57.306 39.130 7.16 0.00 0.00 3.93
2892 5108 5.675538 AGGCAAGTTGATTTAGTAGGCTAG 58.324 41.667 7.16 0.00 0.00 3.42
2893 5109 5.189934 AGGCAAGTTGATTTAGTAGGCTAGT 59.810 40.000 7.16 7.12 0.00 2.57
2894 5110 5.880887 GGCAAGTTGATTTAGTAGGCTAGTT 59.119 40.000 7.16 0.00 0.00 2.24
2895 5111 6.183360 GGCAAGTTGATTTAGTAGGCTAGTTG 60.183 42.308 7.16 0.00 0.00 3.16
2896 5112 6.594159 GCAAGTTGATTTAGTAGGCTAGTTGA 59.406 38.462 7.16 0.00 0.00 3.18
2897 5113 7.281100 GCAAGTTGATTTAGTAGGCTAGTTGAT 59.719 37.037 7.16 2.28 0.00 2.57
2898 5114 9.167311 CAAGTTGATTTAGTAGGCTAGTTGATT 57.833 33.333 7.27 0.00 0.00 2.57
2899 5115 9.740710 AAGTTGATTTAGTAGGCTAGTTGATTT 57.259 29.630 7.27 0.00 0.00 2.17
2908 5124 8.312669 AGTAGGCTAGTTGATTTAGTTGATCT 57.687 34.615 0.00 0.00 0.00 2.75
2909 5125 9.422681 AGTAGGCTAGTTGATTTAGTTGATCTA 57.577 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.135689 CGGTGCAACTTGGCATAGTTC 60.136 52.381 0.00 7.86 46.92 3.01
12 13 2.053627 GATTTTCTGCGGTGCAACTTG 58.946 47.619 0.00 0.00 38.41 3.16
22 23 2.409378 GCATGTTTGGTGATTTTCTGCG 59.591 45.455 0.00 0.00 0.00 5.18
65 66 0.588252 CGTGACCAAACTGCTCCTTG 59.412 55.000 0.00 0.00 0.00 3.61
66 67 0.180406 ACGTGACCAAACTGCTCCTT 59.820 50.000 0.00 0.00 0.00 3.36
101 102 7.507277 AGAGGATAATGAGCACAAGTCATACTA 59.493 37.037 0.00 0.00 33.34 1.82
102 103 6.326064 AGAGGATAATGAGCACAAGTCATACT 59.674 38.462 0.00 0.00 33.34 2.12
103 104 6.520272 AGAGGATAATGAGCACAAGTCATAC 58.480 40.000 0.00 0.00 33.34 2.39
104 105 6.515696 CGAGAGGATAATGAGCACAAGTCATA 60.516 42.308 0.00 0.00 33.34 2.15
105 106 5.609423 GAGAGGATAATGAGCACAAGTCAT 58.391 41.667 0.00 0.00 36.14 3.06
106 107 4.440663 CGAGAGGATAATGAGCACAAGTCA 60.441 45.833 0.00 0.00 0.00 3.41
107 108 4.047822 CGAGAGGATAATGAGCACAAGTC 58.952 47.826 0.00 0.00 0.00 3.01
108 109 3.701542 TCGAGAGGATAATGAGCACAAGT 59.298 43.478 0.00 0.00 0.00 3.16
110 111 4.736126 TTCGAGAGGATAATGAGCACAA 57.264 40.909 0.00 0.00 0.00 3.33
111 112 4.736126 TTTCGAGAGGATAATGAGCACA 57.264 40.909 0.00 0.00 0.00 4.57
112 113 5.007136 CCTTTTTCGAGAGGATAATGAGCAC 59.993 44.000 5.85 0.00 34.91 4.40
113 114 5.104941 TCCTTTTTCGAGAGGATAATGAGCA 60.105 40.000 9.44 0.00 37.15 4.26
114 115 5.360591 TCCTTTTTCGAGAGGATAATGAGC 58.639 41.667 9.44 0.00 37.15 4.26
117 1940 7.766278 TCTTCTTCCTTTTTCGAGAGGATAATG 59.234 37.037 13.07 8.23 41.48 1.90
126 1949 6.066054 AGCTTTTCTTCTTCCTTTTTCGAG 57.934 37.500 0.00 0.00 0.00 4.04
148 1971 8.980143 GTAGTAATACTCCTACTACGGACTAG 57.020 42.308 0.00 0.00 40.93 2.57
168 1991 4.978438 TTTGGCCACCTACAAAGTAGTA 57.022 40.909 3.88 0.00 33.14 1.82
171 1994 3.224269 GGTTTTGGCCACCTACAAAGTA 58.776 45.455 3.88 0.00 37.80 2.24
172 1995 2.036387 GGTTTTGGCCACCTACAAAGT 58.964 47.619 3.88 0.00 37.80 2.66
202 2025 1.294659 CTTGCGTGAGTTCAGCCTCC 61.295 60.000 0.00 0.00 0.00 4.30
213 2036 1.904287 AAAACTATGGGCTTGCGTGA 58.096 45.000 0.00 0.00 0.00 4.35
256 2079 2.125350 GCCGGCAGTTCTCTCTGG 60.125 66.667 24.80 0.00 36.12 3.86
267 2104 1.077787 CCTAATCCTGTTGCCGGCA 60.078 57.895 29.03 29.03 0.00 5.69
269 2106 0.810031 CGACCTAATCCTGTTGCCGG 60.810 60.000 0.00 0.00 0.00 6.13
285 2122 3.945434 CATGCATGCCCGCTCGAC 61.945 66.667 14.93 0.00 0.00 4.20
287 2124 4.246206 CACATGCATGCCCGCTCG 62.246 66.667 26.53 0.29 0.00 5.03
291 2128 0.457166 CTGTTTCACATGCATGCCCG 60.457 55.000 26.53 15.03 0.00 6.13
293 2130 2.063266 CAACTGTTTCACATGCATGCC 58.937 47.619 26.53 9.85 0.00 4.40
294 2131 2.473609 CACAACTGTTTCACATGCATGC 59.526 45.455 26.53 11.82 0.00 4.06
295 2132 3.054166 CCACAACTGTTTCACATGCATG 58.946 45.455 25.09 25.09 0.00 4.06
297 2134 1.202394 GCCACAACTGTTTCACATGCA 60.202 47.619 0.00 0.00 0.00 3.96
356 2269 6.952935 ATTTATTTATTTTGAAACGCGGCA 57.047 29.167 12.47 2.17 0.00 5.69
371 2291 7.040686 GCTCCTCCTCGCCATTTTATTTATTTA 60.041 37.037 0.00 0.00 0.00 1.40
375 2295 4.134563 GCTCCTCCTCGCCATTTTATTTA 58.865 43.478 0.00 0.00 0.00 1.40
379 2299 0.179084 CGCTCCTCCTCGCCATTTTA 60.179 55.000 0.00 0.00 0.00 1.52
478 2407 6.744993 CGACATGTGATCTGTAGTAGCATATC 59.255 42.308 1.15 0.00 0.00 1.63
480 2409 5.048713 CCGACATGTGATCTGTAGTAGCATA 60.049 44.000 1.15 0.00 0.00 3.14
481 2410 4.261783 CCGACATGTGATCTGTAGTAGCAT 60.262 45.833 1.15 0.00 0.00 3.79
482 2411 3.066760 CCGACATGTGATCTGTAGTAGCA 59.933 47.826 1.15 0.00 0.00 3.49
483 2412 3.633235 CCGACATGTGATCTGTAGTAGC 58.367 50.000 1.15 0.00 0.00 3.58
485 2414 2.032924 CGCCGACATGTGATCTGTAGTA 59.967 50.000 1.15 0.00 0.00 1.82
486 2415 1.202302 CGCCGACATGTGATCTGTAGT 60.202 52.381 1.15 0.00 0.00 2.73
487 2416 1.202302 ACGCCGACATGTGATCTGTAG 60.202 52.381 1.15 0.00 0.00 2.74
514 2685 0.382515 GGCTACTGCTCCAGTCTACG 59.617 60.000 0.48 0.00 41.21 3.51
523 2694 1.796796 CTTTTGCCGGCTACTGCTC 59.203 57.895 29.70 0.00 39.59 4.26
533 2704 3.541093 TTGCGCTCTGCTTTTGCCG 62.541 57.895 9.73 0.00 46.87 5.69
563 2736 0.673985 GATCCACCCACATCGATCGA 59.326 55.000 21.86 21.86 0.00 3.59
564 2737 0.319900 GGATCCACCCACATCGATCG 60.320 60.000 9.36 9.36 33.42 3.69
671 2858 1.646189 GGAGGTGAGAAGTGCGAATC 58.354 55.000 0.00 0.00 0.00 2.52
679 2866 1.298014 GGCAGTGGGAGGTGAGAAG 59.702 63.158 0.00 0.00 0.00 2.85
702 2897 1.841556 TCGCTATTGGGCTAGGGGG 60.842 63.158 0.00 0.00 33.67 5.40
732 2930 2.990479 GGAGTGGTTCCAGGCGAT 59.010 61.111 0.00 0.00 46.01 4.58
757 2966 1.588082 GGTCAAAGTAGACGGCCGA 59.412 57.895 35.90 6.51 39.42 5.54
758 2967 1.804326 CGGTCAAAGTAGACGGCCG 60.804 63.158 26.86 26.86 39.42 6.13
766 2975 1.541670 GCTGGGTCAACGGTCAAAGTA 60.542 52.381 0.00 0.00 0.00 2.24
767 2976 0.818040 GCTGGGTCAACGGTCAAAGT 60.818 55.000 0.00 0.00 0.00 2.66
885 3094 2.741211 GACGGTTCAACGGGAGCC 60.741 66.667 0.00 2.73 43.05 4.70
898 3107 1.080025 GACCTCGGAAGTTGGACGG 60.080 63.158 0.00 0.00 0.00 4.79
928 3137 0.824109 TCTCGCCATGGTTGGACTAG 59.176 55.000 14.67 0.00 46.92 2.57
929 3138 0.824109 CTCTCGCCATGGTTGGACTA 59.176 55.000 14.67 0.00 46.92 2.59
930 3139 1.599047 CTCTCGCCATGGTTGGACT 59.401 57.895 14.67 0.00 46.92 3.85
931 3140 2.109126 GCTCTCGCCATGGTTGGAC 61.109 63.158 14.67 0.00 46.92 4.02
932 3141 2.268920 GCTCTCGCCATGGTTGGA 59.731 61.111 14.67 7.81 46.92 3.53
959 3169 3.454812 GGGGAGGCGTATATGTATTCCAT 59.545 47.826 11.25 0.00 37.58 3.41
960 3170 2.835764 GGGGAGGCGTATATGTATTCCA 59.164 50.000 11.25 0.00 0.00 3.53
999 3210 3.794690 GCAGTGAGCACGAGAACTA 57.205 52.632 0.00 0.00 44.79 2.24
1034 3245 2.096248 AGAGACGGGTGAGATTGAGAC 58.904 52.381 0.00 0.00 0.00 3.36
1040 3251 1.686741 GGAGGAAGAGACGGGTGAGAT 60.687 57.143 0.00 0.00 0.00 2.75
1049 3260 2.018515 CTAGACGGTGGAGGAAGAGAC 58.981 57.143 0.00 0.00 0.00 3.36
1055 3266 0.331954 AGCTTCTAGACGGTGGAGGA 59.668 55.000 0.00 0.00 0.00 3.71
1062 3273 2.223386 CCTTCGAGAAGCTTCTAGACGG 60.223 54.545 32.74 32.74 40.18 4.79
1089 3300 2.034053 CGAGAGGAGAGAAGTGTATGGC 59.966 54.545 0.00 0.00 0.00 4.40
1091 3302 2.034053 GGCGAGAGGAGAGAAGTGTATG 59.966 54.545 0.00 0.00 0.00 2.39
1133 3344 4.465512 GCCGGCATGTTCACGCAG 62.466 66.667 24.80 0.00 0.00 5.18
1176 3387 4.778143 GCCCCAGTACACCAGCCG 62.778 72.222 0.00 0.00 0.00 5.52
1214 3425 0.178533 CCTCCTCGTCCTCGTAGACT 59.821 60.000 6.14 0.00 38.33 3.24
1219 3430 2.212794 ATCACCCTCCTCGTCCTCGT 62.213 60.000 0.00 0.00 38.33 4.18
1223 3434 3.095347 GCCATCACCCTCCTCGTCC 62.095 68.421 0.00 0.00 0.00 4.79
1235 3446 4.776322 CCGTTGCCCTCGCCATCA 62.776 66.667 0.00 0.00 0.00 3.07
1866 4078 9.674824 TTAATCTCTAATCCGAAAACGATCTAC 57.325 33.333 0.00 0.00 0.00 2.59
1989 4204 8.153221 TCACTTCCAAAAATCCTAGGTACATA 57.847 34.615 9.08 0.00 0.00 2.29
1995 4210 7.569240 AGTATCTCACTTCCAAAAATCCTAGG 58.431 38.462 0.82 0.82 31.59 3.02
1996 4211 9.535878 GTAGTATCTCACTTCCAAAAATCCTAG 57.464 37.037 0.00 0.00 38.80 3.02
2011 4226 4.806247 GTGCCATGACTTGTAGTATCTCAC 59.194 45.833 0.00 0.00 0.00 3.51
2053 4268 0.462789 ATAGCCCGGTCAGTTTACGG 59.537 55.000 0.00 0.00 46.79 4.02
2054 4269 1.407979 AGATAGCCCGGTCAGTTTACG 59.592 52.381 0.00 0.00 0.00 3.18
2055 4270 2.822764 CAGATAGCCCGGTCAGTTTAC 58.177 52.381 0.00 0.00 0.00 2.01
2056 4271 1.138266 GCAGATAGCCCGGTCAGTTTA 59.862 52.381 0.00 0.00 37.23 2.01
2071 4286 1.072331 ACCTCAAACGTTCAGGCAGAT 59.928 47.619 20.99 4.34 0.00 2.90
2074 4289 0.179234 TGACCTCAAACGTTCAGGCA 59.821 50.000 20.99 17.22 0.00 4.75
2077 4292 5.465390 TCATAAACTGACCTCAAACGTTCAG 59.535 40.000 0.00 6.17 0.00 3.02
2078 4294 5.361427 TCATAAACTGACCTCAAACGTTCA 58.639 37.500 0.00 0.00 0.00 3.18
2088 4304 4.841246 AGAACAGGACTCATAAACTGACCT 59.159 41.667 0.00 0.00 32.01 3.85
2093 4309 9.127277 GAGTATCTAGAACAGGACTCATAAACT 57.873 37.037 0.00 0.00 37.48 2.66
2106 4322 9.967451 CTGGATATCCTAAGAGTATCTAGAACA 57.033 37.037 22.35 0.00 40.47 3.18
2110 4326 7.284489 GCCACTGGATATCCTAAGAGTATCTAG 59.716 44.444 22.35 9.19 40.47 2.43
2126 4342 4.314522 TTTCAAAGGATGCCACTGGATA 57.685 40.909 0.00 0.00 0.00 2.59
2132 4348 3.575965 AACGATTTCAAAGGATGCCAC 57.424 42.857 0.00 0.00 0.00 5.01
2506 4722 1.444895 GGTGGCGATGCAAGCTTTG 60.445 57.895 15.58 0.00 34.52 2.77
2507 4723 1.902918 TGGTGGCGATGCAAGCTTT 60.903 52.632 15.58 0.00 30.42 3.51
2508 4724 2.282391 TGGTGGCGATGCAAGCTT 60.282 55.556 15.58 0.00 30.42 3.74
2509 4725 3.058160 GTGGTGGCGATGCAAGCT 61.058 61.111 15.58 0.00 30.42 3.74
2510 4726 4.120331 GGTGGTGGCGATGCAAGC 62.120 66.667 8.80 8.80 0.00 4.01
2511 4727 2.672651 TGGTGGTGGCGATGCAAG 60.673 61.111 0.00 0.00 0.00 4.01
2512 4728 2.482796 ATCTGGTGGTGGCGATGCAA 62.483 55.000 0.00 0.00 0.00 4.08
2513 4729 2.482796 AATCTGGTGGTGGCGATGCA 62.483 55.000 0.00 0.00 0.00 3.96
2514 4730 1.750399 AATCTGGTGGTGGCGATGC 60.750 57.895 0.00 0.00 0.00 3.91
2515 4731 1.378882 CCAATCTGGTGGTGGCGATG 61.379 60.000 0.00 0.00 33.63 3.84
2516 4732 1.077501 CCAATCTGGTGGTGGCGAT 60.078 57.895 0.00 0.00 33.63 4.58
2517 4733 2.350895 CCAATCTGGTGGTGGCGA 59.649 61.111 0.00 0.00 33.63 5.54
2520 4736 2.362889 GGGCCAATCTGGTGGTGG 60.363 66.667 4.39 0.00 40.46 4.61
2521 4737 2.362889 GGGGCCAATCTGGTGGTG 60.363 66.667 4.39 0.00 40.46 4.17
2522 4738 2.535317 AGGGGCCAATCTGGTGGT 60.535 61.111 4.39 0.00 40.46 4.16
2523 4739 2.043652 CAGGGGCCAATCTGGTGG 60.044 66.667 4.39 0.00 40.46 4.61
2524 4740 2.757099 GCAGGGGCCAATCTGGTG 60.757 66.667 17.77 1.17 40.46 4.17
2525 4741 3.267233 TGCAGGGGCCAATCTGGT 61.267 61.111 17.77 0.00 40.46 4.00
2526 4742 2.441532 CTGCAGGGGCCAATCTGG 60.442 66.667 17.77 3.12 41.55 3.86
2527 4743 3.145551 GCTGCAGGGGCCAATCTG 61.146 66.667 17.12 10.38 40.13 2.90
2528 4744 3.005148 ATGCTGCAGGGGCCAATCT 62.005 57.895 17.12 0.00 40.13 2.40
2529 4745 2.443390 ATGCTGCAGGGGCCAATC 60.443 61.111 17.12 0.00 40.13 2.67
2530 4746 2.762459 CATGCTGCAGGGGCCAAT 60.762 61.111 17.12 0.00 40.13 3.16
2531 4747 4.304413 ACATGCTGCAGGGGCCAA 62.304 61.111 19.14 0.00 40.13 4.52
2541 4757 1.978712 CTCTCGCCTTGCACATGCTG 61.979 60.000 5.31 0.00 42.66 4.41
2542 4758 1.744368 CTCTCGCCTTGCACATGCT 60.744 57.895 5.31 0.00 42.66 3.79
2543 4759 1.975363 GACTCTCGCCTTGCACATGC 61.975 60.000 0.00 0.00 42.50 4.06
2544 4760 1.690283 CGACTCTCGCCTTGCACATG 61.690 60.000 0.00 0.00 31.14 3.21
2545 4761 1.446792 CGACTCTCGCCTTGCACAT 60.447 57.895 0.00 0.00 31.14 3.21
2546 4762 2.049156 CGACTCTCGCCTTGCACA 60.049 61.111 0.00 0.00 31.14 4.57
2566 4782 4.196826 GACGCATGCTGACGACGC 62.197 66.667 17.13 0.00 0.00 5.19
2567 4783 2.002963 GAAGACGCATGCTGACGACG 62.003 60.000 17.13 0.00 0.00 5.12
2568 4784 1.687494 GGAAGACGCATGCTGACGAC 61.687 60.000 17.13 0.18 0.00 4.34
2569 4785 1.446099 GGAAGACGCATGCTGACGA 60.446 57.895 17.13 0.00 0.00 4.20
2570 4786 2.456119 GGGAAGACGCATGCTGACG 61.456 63.158 17.13 2.03 0.00 4.35
2571 4787 1.078848 AGGGAAGACGCATGCTGAC 60.079 57.895 17.13 9.72 0.00 3.51
2572 4788 1.219124 GAGGGAAGACGCATGCTGA 59.781 57.895 17.13 0.00 0.00 4.26
2573 4789 2.169789 CGAGGGAAGACGCATGCTG 61.170 63.158 17.13 11.87 0.00 4.41
2574 4790 2.172483 AACGAGGGAAGACGCATGCT 62.172 55.000 17.13 2.38 0.00 3.79
2575 4791 1.741770 AACGAGGGAAGACGCATGC 60.742 57.895 7.91 7.91 0.00 4.06
2576 4792 1.970917 GCAACGAGGGAAGACGCATG 61.971 60.000 0.00 0.00 0.00 4.06
2577 4793 1.741770 GCAACGAGGGAAGACGCAT 60.742 57.895 0.00 0.00 0.00 4.73
2578 4794 2.357034 GCAACGAGGGAAGACGCA 60.357 61.111 0.00 0.00 0.00 5.24
2579 4795 3.479269 CGCAACGAGGGAAGACGC 61.479 66.667 0.00 0.00 0.00 5.19
2580 4796 2.809601 CCGCAACGAGGGAAGACG 60.810 66.667 0.00 0.00 0.00 4.18
2581 4797 3.119096 GCCGCAACGAGGGAAGAC 61.119 66.667 0.00 0.00 0.00 3.01
2582 4798 2.463589 AATGCCGCAACGAGGGAAGA 62.464 55.000 0.00 0.00 31.40 2.87
2583 4799 2.040544 AATGCCGCAACGAGGGAAG 61.041 57.895 0.00 0.00 31.40 3.46
2584 4800 2.033448 AATGCCGCAACGAGGGAA 59.967 55.556 0.00 0.00 31.40 3.97
2585 4801 2.745884 CAATGCCGCAACGAGGGA 60.746 61.111 0.00 0.00 0.00 4.20
2586 4802 3.039202 GACAATGCCGCAACGAGGG 62.039 63.158 0.00 0.00 0.00 4.30
2587 4803 2.480555 GACAATGCCGCAACGAGG 59.519 61.111 0.00 0.00 0.00 4.63
2588 4804 2.096406 CGACAATGCCGCAACGAG 59.904 61.111 0.00 0.00 0.00 4.18
2597 4813 2.860628 CTACGGCGAGCGACAATGC 61.861 63.158 16.62 0.00 0.00 3.56
2598 4814 2.860628 GCTACGGCGAGCGACAATG 61.861 63.158 16.62 0.00 31.57 2.82
2599 4815 2.582498 GCTACGGCGAGCGACAAT 60.582 61.111 16.62 0.00 31.57 2.71
2606 4822 2.640421 GAGGCTAGCTACGGCGAG 59.360 66.667 16.62 8.03 44.37 5.03
2607 4823 3.277602 CGAGGCTAGCTACGGCGA 61.278 66.667 16.62 0.00 44.37 5.54
2608 4824 4.984689 GCGAGGCTAGCTACGGCG 62.985 72.222 25.48 4.80 44.37 6.46
2609 4825 4.984689 CGCGAGGCTAGCTACGGC 62.985 72.222 25.48 18.06 39.06 5.68
2610 4826 1.779025 TAACGCGAGGCTAGCTACGG 61.779 60.000 25.48 19.74 0.00 4.02
2611 4827 0.656786 GTAACGCGAGGCTAGCTACG 60.657 60.000 15.93 22.29 0.00 3.51
2612 4828 0.317687 GGTAACGCGAGGCTAGCTAC 60.318 60.000 15.93 13.06 0.00 3.58
2613 4829 0.749091 TGGTAACGCGAGGCTAGCTA 60.749 55.000 15.93 1.32 42.51 3.32
2614 4830 1.392710 ATGGTAACGCGAGGCTAGCT 61.393 55.000 15.93 2.33 42.51 3.32
2615 4831 0.529992 AATGGTAACGCGAGGCTAGC 60.530 55.000 15.93 9.78 42.51 3.42
2616 4832 1.488527 GAATGGTAACGCGAGGCTAG 58.511 55.000 15.93 0.00 42.51 3.42
2617 4833 0.103572 GGAATGGTAACGCGAGGCTA 59.896 55.000 15.93 0.00 42.51 3.93
2618 4834 1.153429 GGAATGGTAACGCGAGGCT 60.153 57.895 15.93 0.00 42.51 4.58
2619 4835 2.522638 CGGAATGGTAACGCGAGGC 61.523 63.158 15.93 0.88 42.51 4.70
2620 4836 1.140161 TCGGAATGGTAACGCGAGG 59.860 57.895 15.93 0.00 42.51 4.63
2621 4837 0.457166 TGTCGGAATGGTAACGCGAG 60.457 55.000 15.93 0.00 42.51 5.03
2622 4838 0.457166 CTGTCGGAATGGTAACGCGA 60.457 55.000 15.93 0.00 42.51 5.87
2623 4839 0.734942 ACTGTCGGAATGGTAACGCG 60.735 55.000 3.53 3.53 42.51 6.01
2624 4840 0.997196 GACTGTCGGAATGGTAACGC 59.003 55.000 0.00 0.00 42.51 4.84
2625 4841 1.265568 CGACTGTCGGAATGGTAACG 58.734 55.000 21.78 0.00 36.00 3.18
2636 4852 1.101635 TATGAGGCCTCCGACTGTCG 61.102 60.000 29.95 22.49 40.07 4.35
2637 4853 0.671251 CTATGAGGCCTCCGACTGTC 59.329 60.000 29.95 3.61 0.00 3.51
2638 4854 1.395826 GCTATGAGGCCTCCGACTGT 61.396 60.000 29.95 11.07 0.00 3.55
2639 4855 1.112315 AGCTATGAGGCCTCCGACTG 61.112 60.000 29.95 15.63 0.00 3.51
2640 4856 0.825840 GAGCTATGAGGCCTCCGACT 60.826 60.000 29.95 20.56 0.00 4.18
2641 4857 1.663173 GAGCTATGAGGCCTCCGAC 59.337 63.158 29.95 16.21 0.00 4.79
2642 4858 1.531840 GGAGCTATGAGGCCTCCGA 60.532 63.158 29.95 16.36 0.00 4.55
2643 4859 2.925262 CGGAGCTATGAGGCCTCCG 61.925 68.421 29.95 20.74 41.97 4.63
2644 4860 1.403687 AACGGAGCTATGAGGCCTCC 61.404 60.000 29.95 14.36 0.00 4.30
2645 4861 0.249657 CAACGGAGCTATGAGGCCTC 60.250 60.000 26.78 26.78 0.00 4.70
2646 4862 1.690219 CCAACGGAGCTATGAGGCCT 61.690 60.000 3.86 3.86 0.00 5.19
2647 4863 1.227674 CCAACGGAGCTATGAGGCC 60.228 63.158 0.00 0.00 0.00 5.19
2648 4864 1.889573 GCCAACGGAGCTATGAGGC 60.890 63.158 9.04 9.04 0.00 4.70
2649 4865 0.531532 CTGCCAACGGAGCTATGAGG 60.532 60.000 0.00 0.00 0.00 3.86
2650 4866 0.531532 CCTGCCAACGGAGCTATGAG 60.532 60.000 0.00 0.00 0.00 2.90
2651 4867 1.522092 CCTGCCAACGGAGCTATGA 59.478 57.895 0.00 0.00 0.00 2.15
2652 4868 1.524621 CCCTGCCAACGGAGCTATG 60.525 63.158 0.00 0.00 0.00 2.23
2653 4869 1.562672 AACCCTGCCAACGGAGCTAT 61.563 55.000 0.00 0.00 0.00 2.97
2654 4870 2.221299 AACCCTGCCAACGGAGCTA 61.221 57.895 0.00 0.00 0.00 3.32
2655 4871 3.570212 AACCCTGCCAACGGAGCT 61.570 61.111 0.00 0.00 0.00 4.09
2656 4872 3.365265 CAACCCTGCCAACGGAGC 61.365 66.667 0.00 0.00 0.00 4.70
2657 4873 3.365265 GCAACCCTGCCAACGGAG 61.365 66.667 0.00 0.00 43.26 4.63
2666 4882 1.538512 CTGATGAGTGTTGCAACCCTG 59.461 52.381 26.14 4.61 0.00 4.45
2667 4883 1.901591 CTGATGAGTGTTGCAACCCT 58.098 50.000 26.14 20.78 0.00 4.34
2668 4884 0.242017 GCTGATGAGTGTTGCAACCC 59.758 55.000 26.14 15.83 0.00 4.11
2669 4885 1.242076 AGCTGATGAGTGTTGCAACC 58.758 50.000 26.14 17.03 0.00 3.77
2670 4886 3.499918 ACTAAGCTGATGAGTGTTGCAAC 59.500 43.478 22.83 22.83 0.00 4.17
2671 4887 3.743521 ACTAAGCTGATGAGTGTTGCAA 58.256 40.909 0.00 0.00 0.00 4.08
2672 4888 3.329386 GACTAAGCTGATGAGTGTTGCA 58.671 45.455 0.00 0.00 0.00 4.08
2673 4889 2.346847 CGACTAAGCTGATGAGTGTTGC 59.653 50.000 0.00 0.00 0.00 4.17
2674 4890 2.926200 CCGACTAAGCTGATGAGTGTTG 59.074 50.000 0.00 0.00 0.00 3.33
2675 4891 2.675317 GCCGACTAAGCTGATGAGTGTT 60.675 50.000 0.00 0.00 0.00 3.32
2676 4892 1.134965 GCCGACTAAGCTGATGAGTGT 60.135 52.381 0.00 0.00 0.00 3.55
2677 4893 1.135915 AGCCGACTAAGCTGATGAGTG 59.864 52.381 0.00 0.00 39.69 3.51
2678 4894 1.479709 AGCCGACTAAGCTGATGAGT 58.520 50.000 0.00 0.00 39.69 3.41
2685 4901 1.186200 TGATGACAGCCGACTAAGCT 58.814 50.000 0.00 0.00 42.70 3.74
2686 4902 1.661112 GTTGATGACAGCCGACTAAGC 59.339 52.381 0.00 0.00 0.00 3.09
2687 4903 3.119316 AGAGTTGATGACAGCCGACTAAG 60.119 47.826 0.00 0.00 0.00 2.18
2688 4904 2.826128 AGAGTTGATGACAGCCGACTAA 59.174 45.455 0.00 0.00 0.00 2.24
2689 4905 2.164422 CAGAGTTGATGACAGCCGACTA 59.836 50.000 0.00 0.00 0.00 2.59
2690 4906 1.067283 CAGAGTTGATGACAGCCGACT 60.067 52.381 0.00 0.00 0.00 4.18
2691 4907 1.337260 ACAGAGTTGATGACAGCCGAC 60.337 52.381 0.00 0.00 0.00 4.79
2692 4908 0.969149 ACAGAGTTGATGACAGCCGA 59.031 50.000 0.00 0.00 0.00 5.54
2693 4909 1.354040 GACAGAGTTGATGACAGCCG 58.646 55.000 0.00 0.00 0.00 5.52
2694 4910 1.354040 CGACAGAGTTGATGACAGCC 58.646 55.000 0.00 0.00 0.00 4.85
2695 4911 0.718343 GCGACAGAGTTGATGACAGC 59.282 55.000 0.00 0.00 0.00 4.40
2696 4912 2.360553 AGCGACAGAGTTGATGACAG 57.639 50.000 0.00 0.00 0.00 3.51
2697 4913 2.802247 CAAAGCGACAGAGTTGATGACA 59.198 45.455 0.00 0.00 0.00 3.58
2698 4914 2.802816 ACAAAGCGACAGAGTTGATGAC 59.197 45.455 0.00 0.00 0.00 3.06
2699 4915 2.802247 CACAAAGCGACAGAGTTGATGA 59.198 45.455 0.00 0.00 0.00 2.92
2700 4916 2.096069 CCACAAAGCGACAGAGTTGATG 60.096 50.000 0.00 0.00 0.00 3.07
2701 4917 2.146342 CCACAAAGCGACAGAGTTGAT 58.854 47.619 0.00 0.00 0.00 2.57
2702 4918 1.134521 ACCACAAAGCGACAGAGTTGA 60.135 47.619 0.00 0.00 0.00 3.18
2703 4919 1.299541 ACCACAAAGCGACAGAGTTG 58.700 50.000 0.00 0.00 0.00 3.16
2704 4920 1.670811 CAACCACAAAGCGACAGAGTT 59.329 47.619 0.00 0.00 0.00 3.01
2705 4921 1.299541 CAACCACAAAGCGACAGAGT 58.700 50.000 0.00 0.00 0.00 3.24
2706 4922 0.040958 GCAACCACAAAGCGACAGAG 60.041 55.000 0.00 0.00 0.00 3.35
2707 4923 0.746204 TGCAACCACAAAGCGACAGA 60.746 50.000 0.00 0.00 0.00 3.41
2708 4924 0.317269 CTGCAACCACAAAGCGACAG 60.317 55.000 0.00 0.00 0.00 3.51
2709 4925 1.726865 CTGCAACCACAAAGCGACA 59.273 52.632 0.00 0.00 0.00 4.35
2710 4926 1.658409 GCTGCAACCACAAAGCGAC 60.658 57.895 0.00 0.00 0.00 5.19
2711 4927 1.785041 GAGCTGCAACCACAAAGCGA 61.785 55.000 1.02 0.00 40.63 4.93
2712 4928 1.370900 GAGCTGCAACCACAAAGCG 60.371 57.895 1.02 0.00 40.63 4.68
2713 4929 1.006922 GGAGCTGCAACCACAAAGC 60.007 57.895 0.00 0.00 35.86 3.51
2714 4930 1.662044 GGGAGCTGCAACCACAAAG 59.338 57.895 7.79 0.00 0.00 2.77
2715 4931 2.192861 CGGGAGCTGCAACCACAAA 61.193 57.895 7.79 0.00 0.00 2.83
2716 4932 2.594303 CGGGAGCTGCAACCACAA 60.594 61.111 7.79 0.00 0.00 3.33
2717 4933 4.641645 CCGGGAGCTGCAACCACA 62.642 66.667 7.79 0.00 0.00 4.17
2731 4947 2.203209 GCTACAATCCCTGCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
2732 4948 1.819632 GTGCTACAATCCCTGCCCG 60.820 63.158 0.00 0.00 0.00 6.13
2733 4949 1.032114 GTGTGCTACAATCCCTGCCC 61.032 60.000 0.00 0.00 0.00 5.36
2734 4950 0.322456 TGTGTGCTACAATCCCTGCC 60.322 55.000 0.00 0.00 36.06 4.85
2735 4951 1.672881 GATGTGTGCTACAATCCCTGC 59.327 52.381 0.00 0.00 43.77 4.85
2736 4952 2.941064 CAGATGTGTGCTACAATCCCTG 59.059 50.000 0.00 0.00 43.77 4.45
2737 4953 2.681976 GCAGATGTGTGCTACAATCCCT 60.682 50.000 0.00 0.00 43.77 4.20
2738 4954 1.672881 GCAGATGTGTGCTACAATCCC 59.327 52.381 0.00 0.00 43.77 3.85
2739 4955 1.328680 CGCAGATGTGTGCTACAATCC 59.671 52.381 0.59 0.00 43.77 3.01
2740 4956 2.002586 ACGCAGATGTGTGCTACAATC 58.997 47.619 2.85 2.49 43.77 2.67
2741 4957 2.099141 ACGCAGATGTGTGCTACAAT 57.901 45.000 2.85 0.00 43.77 2.71
2742 4958 1.530720 CAACGCAGATGTGTGCTACAA 59.469 47.619 2.85 0.00 43.77 2.41
2743 4959 1.147473 CAACGCAGATGTGTGCTACA 58.853 50.000 2.85 0.00 44.87 2.74
2744 4960 1.126846 GACAACGCAGATGTGTGCTAC 59.873 52.381 2.85 0.00 45.60 3.58
2745 4961 1.428448 GACAACGCAGATGTGTGCTA 58.572 50.000 2.85 0.00 45.60 3.49
2746 4962 1.560004 CGACAACGCAGATGTGTGCT 61.560 55.000 2.85 0.00 45.60 4.40
2747 4963 1.154599 CGACAACGCAGATGTGTGC 60.155 57.895 2.85 0.00 45.60 4.57
2748 4964 1.414378 TACGACAACGCAGATGTGTG 58.586 50.000 1.18 1.18 45.60 3.82
2749 4965 1.992667 CATACGACAACGCAGATGTGT 59.007 47.619 0.00 0.00 45.60 3.72
2750 4966 1.267038 GCATACGACAACGCAGATGTG 60.267 52.381 0.00 0.00 45.60 3.21
2751 4967 6.684278 TGTAGCATACGACAACGCAGATGT 62.684 45.833 0.00 0.00 46.99 3.06
2752 4968 1.280982 AGCATACGACAACGCAGATG 58.719 50.000 0.00 0.00 43.96 2.90
2753 4969 2.159296 TGTAGCATACGACAACGCAGAT 60.159 45.455 0.00 0.00 46.99 2.90
2754 4970 1.200484 TGTAGCATACGACAACGCAGA 59.800 47.619 0.00 0.00 46.99 4.26
2755 4971 1.624487 TGTAGCATACGACAACGCAG 58.376 50.000 0.00 0.00 46.99 5.18
2756 4972 2.287393 ATGTAGCATACGACAACGCA 57.713 45.000 0.00 0.00 46.99 5.24
2757 4973 3.651562 AAATGTAGCATACGACAACGC 57.348 42.857 0.00 0.00 46.99 4.84
2758 4974 5.198116 TCAAAATGTAGCATACGACAACG 57.802 39.130 0.00 0.00 46.99 4.10
2759 4975 9.210426 CTAAATCAAAATGTAGCATACGACAAC 57.790 33.333 0.00 0.00 46.99 3.32
2760 4976 8.941977 ACTAAATCAAAATGTAGCATACGACAA 58.058 29.630 0.00 0.00 46.99 3.18
2761 4977 8.487313 ACTAAATCAAAATGTAGCATACGACA 57.513 30.769 0.00 0.00 46.99 4.35
2763 4979 9.256477 CCTACTAAATCAAAATGTAGCATACGA 57.744 33.333 0.00 0.00 46.99 3.43
2764 4980 9.042008 ACCTACTAAATCAAAATGTAGCATACG 57.958 33.333 0.00 0.00 46.99 3.06
2768 4984 9.953565 ACTAACCTACTAAATCAAAATGTAGCA 57.046 29.630 0.00 0.00 31.91 3.49
2828 5044 9.959721 TTCTAAATCAACTAAATCAACTAGCCT 57.040 29.630 0.00 0.00 0.00 4.58
2829 5045 9.989869 GTTCTAAATCAACTAAATCAACTAGCC 57.010 33.333 0.00 0.00 0.00 3.93
2850 5066 9.515226 ACTTGCCTACTAAATCAAAATGTTCTA 57.485 29.630 0.00 0.00 0.00 2.10
2851 5067 8.409358 ACTTGCCTACTAAATCAAAATGTTCT 57.591 30.769 0.00 0.00 0.00 3.01
2852 5068 8.915654 CAACTTGCCTACTAAATCAAAATGTTC 58.084 33.333 0.00 0.00 0.00 3.18
2853 5069 8.637986 TCAACTTGCCTACTAAATCAAAATGTT 58.362 29.630 0.00 0.00 0.00 2.71
2854 5070 8.177119 TCAACTTGCCTACTAAATCAAAATGT 57.823 30.769 0.00 0.00 0.00 2.71
2855 5071 9.643693 AATCAACTTGCCTACTAAATCAAAATG 57.356 29.630 0.00 0.00 0.00 2.32
2859 5075 9.515226 ACTAAATCAACTTGCCTACTAAATCAA 57.485 29.630 0.00 0.00 0.00 2.57
2862 5078 9.614792 CCTACTAAATCAACTTGCCTACTAAAT 57.385 33.333 0.00 0.00 0.00 1.40
2863 5079 7.551617 GCCTACTAAATCAACTTGCCTACTAAA 59.448 37.037 0.00 0.00 0.00 1.85
2864 5080 7.046033 GCCTACTAAATCAACTTGCCTACTAA 58.954 38.462 0.00 0.00 0.00 2.24
2865 5081 6.383147 AGCCTACTAAATCAACTTGCCTACTA 59.617 38.462 0.00 0.00 0.00 1.82
2866 5082 5.189934 AGCCTACTAAATCAACTTGCCTACT 59.810 40.000 0.00 0.00 0.00 2.57
2867 5083 5.429130 AGCCTACTAAATCAACTTGCCTAC 58.571 41.667 0.00 0.00 0.00 3.18
2868 5084 5.693769 AGCCTACTAAATCAACTTGCCTA 57.306 39.130 0.00 0.00 0.00 3.93
2869 5085 4.576330 AGCCTACTAAATCAACTTGCCT 57.424 40.909 0.00 0.00 0.00 4.75
2870 5086 5.429130 ACTAGCCTACTAAATCAACTTGCC 58.571 41.667 0.00 0.00 0.00 4.52
2871 5087 6.594159 TCAACTAGCCTACTAAATCAACTTGC 59.406 38.462 0.00 0.00 0.00 4.01
2872 5088 8.723942 ATCAACTAGCCTACTAAATCAACTTG 57.276 34.615 0.00 0.00 0.00 3.16
2873 5089 9.740710 AAATCAACTAGCCTACTAAATCAACTT 57.259 29.630 0.00 0.00 0.00 2.66
2882 5098 9.422681 AGATCAACTAAATCAACTAGCCTACTA 57.577 33.333 0.00 0.00 0.00 1.82
2883 5099 8.312669 AGATCAACTAAATCAACTAGCCTACT 57.687 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.