Multiple sequence alignment - TraesCS3B01G546500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G546500 chr3B 100.000 2366 0 0 1 2366 783120052 783122417 0.000000e+00 4370.0
1 TraesCS3B01G546500 chr3B 90.341 176 13 3 535 708 106776888 106777061 6.580000e-56 228.0
2 TraesCS3B01G546500 chr3B 83.333 66 11 0 944 1009 783107969 783108034 7.060000e-06 62.1
3 TraesCS3B01G546500 chr1B 88.889 711 69 5 1 704 536764329 536763622 0.000000e+00 867.0
4 TraesCS3B01G546500 chr1B 87.374 697 62 4 4 700 567693143 567692473 0.000000e+00 776.0
5 TraesCS3B01G546500 chr6D 88.336 703 77 5 2 702 9396433 9395734 0.000000e+00 839.0
6 TraesCS3B01G546500 chr2A 85.532 705 95 6 1 702 705344173 705343473 0.000000e+00 730.0
7 TraesCS3B01G546500 chr5B 87.580 628 74 4 6 631 549461346 549460721 0.000000e+00 725.0
8 TraesCS3B01G546500 chr5B 87.204 633 76 5 1 631 549427694 549427065 0.000000e+00 715.0
9 TraesCS3B01G546500 chr5B 76.190 210 35 15 1596 1796 386310816 386310613 1.940000e-16 97.1
10 TraesCS3B01G546500 chr5B 76.821 151 29 6 1603 1747 642742445 642742595 1.950000e-11 80.5
11 TraesCS3B01G546500 chr5B 74.242 198 37 12 1604 1791 642718155 642718348 1.170000e-08 71.3
12 TraesCS3B01G546500 chrUn 86.792 583 74 3 121 702 353397898 353397318 0.000000e+00 647.0
13 TraesCS3B01G546500 chrUn 86.621 583 75 3 121 702 353333588 353333008 1.980000e-180 641.0
14 TraesCS3B01G546500 chrUn 83.258 663 91 15 3 657 247026163 247026813 2.030000e-165 592.0
15 TraesCS3B01G546500 chr3D 84.730 537 59 14 704 1230 586366109 586366632 1.250000e-142 516.0
16 TraesCS3B01G546500 chr3D 83.149 451 41 19 1813 2257 586367487 586367908 1.720000e-101 379.0
17 TraesCS3B01G546500 chr3D 93.443 244 14 2 703 945 586585020 586584778 6.220000e-96 361.0
18 TraesCS3B01G546500 chr3D 85.030 167 22 2 1630 1795 20691658 20691494 1.450000e-37 167.0
19 TraesCS3B01G546500 chr3D 85.161 155 22 1 2213 2366 586584318 586584164 8.750000e-35 158.0
20 TraesCS3B01G546500 chr3D 74.603 315 56 16 763 1065 586508510 586508812 1.490000e-22 117.0
21 TraesCS3B01G546500 chr1A 85.507 207 26 2 1589 1795 15180461 15180259 1.840000e-51 213.0
22 TraesCS3B01G546500 chr1D 83.182 220 26 4 1578 1795 14199884 14199674 8.630000e-45 191.0
23 TraesCS3B01G546500 chr7A 83.516 182 29 1 1603 1784 6874222 6874042 4.040000e-38 169.0
24 TraesCS3B01G546500 chr7A 74.026 231 46 14 1582 1804 355197338 355197562 5.420000e-12 82.4
25 TraesCS3B01G546500 chr2B 91.892 74 6 0 1647 1720 779224999 779225072 1.160000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G546500 chr3B 783120052 783122417 2365 False 4370.0 4370 100.0000 1 2366 1 chr3B.!!$F3 2365
1 TraesCS3B01G546500 chr1B 536763622 536764329 707 True 867.0 867 88.8890 1 704 1 chr1B.!!$R1 703
2 TraesCS3B01G546500 chr1B 567692473 567693143 670 True 776.0 776 87.3740 4 700 1 chr1B.!!$R2 696
3 TraesCS3B01G546500 chr6D 9395734 9396433 699 True 839.0 839 88.3360 2 702 1 chr6D.!!$R1 700
4 TraesCS3B01G546500 chr2A 705343473 705344173 700 True 730.0 730 85.5320 1 702 1 chr2A.!!$R1 701
5 TraesCS3B01G546500 chr5B 549460721 549461346 625 True 725.0 725 87.5800 6 631 1 chr5B.!!$R3 625
6 TraesCS3B01G546500 chr5B 549427065 549427694 629 True 715.0 715 87.2040 1 631 1 chr5B.!!$R2 630
7 TraesCS3B01G546500 chrUn 353397318 353397898 580 True 647.0 647 86.7920 121 702 1 chrUn.!!$R2 581
8 TraesCS3B01G546500 chrUn 353333008 353333588 580 True 641.0 641 86.6210 121 702 1 chrUn.!!$R1 581
9 TraesCS3B01G546500 chrUn 247026163 247026813 650 False 592.0 592 83.2580 3 657 1 chrUn.!!$F1 654
10 TraesCS3B01G546500 chr3D 586366109 586367908 1799 False 447.5 516 83.9395 704 2257 2 chr3D.!!$F2 1553
11 TraesCS3B01G546500 chr3D 586584164 586585020 856 True 259.5 361 89.3020 703 2366 2 chr3D.!!$R2 1663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 454 0.038892 GGCAAGGTACGAAGACGACA 60.039 55.0 0.0 0.0 42.66 4.35 F
720 753 0.251209 AGTCACTGTCACGAGGGCTA 60.251 55.0 0.0 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 1300 0.040204 CCTTGTTGGGATTCAGGGCT 59.960 55.0 0.00 0.0 0.0 5.19 R
1766 2094 0.107361 TGCCGGACAGAGATAGACGA 60.107 55.0 5.05 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.968206 GCGTAGGGTTGAGGACGT 59.032 61.111 0.00 0.00 37.61 4.34
98 100 1.376466 GTAGGGATGCATCGGCCAT 59.624 57.895 20.15 7.92 40.13 4.40
383 386 3.452621 ATCCGATCTGGGAGCCCGA 62.453 63.158 0.29 2.03 40.02 5.14
444 447 1.980052 CTGGGAGGCAAGGTACGAA 59.020 57.895 0.00 0.00 0.00 3.85
451 454 0.038892 GGCAAGGTACGAAGACGACA 60.039 55.000 0.00 0.00 42.66 4.35
557 588 0.391263 GCGGAAGACATCGAACCCTT 60.391 55.000 0.00 0.00 0.00 3.95
563 594 2.973945 AGACATCGAACCCTTAACTGC 58.026 47.619 0.00 0.00 0.00 4.40
585 616 5.409214 TGCTACCATGTAAAACGTAGGTTTC 59.591 40.000 13.52 3.79 45.35 2.78
659 692 6.546034 AGGTATCAAAGGGTACAATACAATGC 59.454 38.462 0.00 0.00 0.00 3.56
716 749 2.552743 TCTAACAGTCACTGTCACGAGG 59.447 50.000 11.89 0.00 44.62 4.63
720 753 0.251209 AGTCACTGTCACGAGGGCTA 60.251 55.000 0.00 0.00 0.00 3.93
764 797 3.117794 TCGATTATTTTCTACACGCCCG 58.882 45.455 0.00 0.00 0.00 6.13
785 818 0.395686 GCATGCATGGGAGCTAGAGA 59.604 55.000 27.34 0.00 34.99 3.10
836 869 4.932146 ACGTACAAAAGCTCTTGCATTTT 58.068 34.783 0.00 0.00 37.91 1.82
917 951 4.141287 CCAACAACAAACCTGGATCTACA 58.859 43.478 0.00 0.00 0.00 2.74
920 954 5.964958 ACAACAAACCTGGATCTACAATG 57.035 39.130 0.00 0.00 0.00 2.82
956 990 1.211969 GGCTACTCGCAACACTCGA 59.788 57.895 0.00 0.00 41.67 4.04
974 1016 2.113774 CTCCACAGTTGCCCAGCA 59.886 61.111 0.00 0.00 36.47 4.41
975 1017 2.203337 TCCACAGTTGCCCAGCAC 60.203 61.111 0.00 0.00 38.71 4.40
979 1021 2.127232 ACAGTTGCCCAGCACCAAC 61.127 57.895 0.00 0.00 38.71 3.77
980 1022 2.906897 AGTTGCCCAGCACCAACG 60.907 61.111 0.00 0.00 44.45 4.10
982 1024 4.196778 TTGCCCAGCACCAACGGA 62.197 61.111 0.00 0.00 38.71 4.69
983 1025 3.505790 TTGCCCAGCACCAACGGAT 62.506 57.895 0.00 0.00 38.71 4.18
984 1026 3.134127 GCCCAGCACCAACGGATC 61.134 66.667 0.00 0.00 0.00 3.36
996 1038 2.029828 CCAACGGATCGATTAGCTAGCT 60.030 50.000 23.12 23.12 0.00 3.32
997 1039 3.190744 CCAACGGATCGATTAGCTAGCTA 59.809 47.826 20.67 20.67 0.00 3.32
998 1040 4.159857 CAACGGATCGATTAGCTAGCTAC 58.840 47.826 24.09 12.66 0.00 3.58
999 1041 2.748532 ACGGATCGATTAGCTAGCTACC 59.251 50.000 24.09 18.33 0.00 3.18
1009 1051 2.752030 AGCTAGCTACCATGGACAGAA 58.248 47.619 21.47 6.15 0.00 3.02
1010 1052 3.107601 AGCTAGCTACCATGGACAGAAA 58.892 45.455 21.47 5.82 0.00 2.52
1011 1053 3.133721 AGCTAGCTACCATGGACAGAAAG 59.866 47.826 21.47 15.02 0.00 2.62
1022 1065 2.158623 TGGACAGAAAGGTGTGCATCTT 60.159 45.455 0.00 0.00 43.09 2.40
1026 1069 3.327757 ACAGAAAGGTGTGCATCTTCCTA 59.672 43.478 0.00 0.00 28.76 2.94
1030 1073 5.248477 AGAAAGGTGTGCATCTTCCTAGTAA 59.752 40.000 0.00 0.00 28.76 2.24
1053 1096 2.125753 GTGCTAGCTGTGCTCGCT 60.126 61.111 17.23 9.39 45.59 4.93
1143 1189 2.583319 CTGATGTCGGCGTCGCAT 60.583 61.111 20.50 16.91 36.43 4.73
1170 1216 1.215382 CATGAAGCTGGACGACGGA 59.785 57.895 0.00 0.00 0.00 4.69
1185 1231 4.459089 GGAGTGGTGCCGGAGCTC 62.459 72.222 5.05 4.71 40.80 4.09
1264 1310 4.570874 GCCCGGGAGCCCTGAATC 62.571 72.222 29.31 0.00 29.82 2.52
1265 1311 3.878667 CCCGGGAGCCCTGAATCC 61.879 72.222 18.48 0.00 34.64 3.01
1269 1315 4.666105 GGAGCCCTGAATCCCAAC 57.334 61.111 0.00 0.00 0.00 3.77
1272 1318 1.467920 GAGCCCTGAATCCCAACAAG 58.532 55.000 0.00 0.00 0.00 3.16
1283 1329 2.633860 CCAACAAGGGAGTCTGCAC 58.366 57.895 0.00 0.00 0.00 4.57
1284 1330 0.890996 CCAACAAGGGAGTCTGCACC 60.891 60.000 0.00 0.00 0.00 5.01
1285 1331 0.179020 CAACAAGGGAGTCTGCACCA 60.179 55.000 0.00 0.00 0.00 4.17
1286 1332 0.109342 AACAAGGGAGTCTGCACCAG 59.891 55.000 0.00 0.00 0.00 4.00
1288 1334 1.152030 AAGGGAGTCTGCACCAGGA 60.152 57.895 0.00 0.00 31.51 3.86
1300 1346 4.704833 CCAGGAGTGGTGGGTGCG 62.705 72.222 0.00 0.00 39.30 5.34
1301 1347 4.704833 CAGGAGTGGTGGGTGCGG 62.705 72.222 0.00 0.00 0.00 5.69
1323 1369 1.558294 GGGAAGGGAAATCCGTACACT 59.442 52.381 0.00 0.00 41.52 3.55
1328 1374 1.087771 GGAAATCCGTACACTGGCCG 61.088 60.000 0.00 0.00 0.00 6.13
1329 1375 1.078708 AAATCCGTACACTGGCCGG 60.079 57.895 11.02 11.02 43.03 6.13
1338 1384 4.740822 ACTGGCCGGGGATGCAAC 62.741 66.667 18.00 0.00 0.00 4.17
1356 1402 2.878406 CAACCCATATAACTTCTGCCCG 59.122 50.000 0.00 0.00 0.00 6.13
1357 1403 1.202770 ACCCATATAACTTCTGCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
1358 1404 1.523758 CCATATAACTTCTGCCCGCC 58.476 55.000 0.00 0.00 0.00 6.13
1359 1405 1.202758 CCATATAACTTCTGCCCGCCA 60.203 52.381 0.00 0.00 0.00 5.69
1361 1407 2.791347 TATAACTTCTGCCCGCCAAA 57.209 45.000 0.00 0.00 0.00 3.28
1362 1408 1.463674 ATAACTTCTGCCCGCCAAAG 58.536 50.000 0.00 0.00 0.00 2.77
1367 1413 1.452145 TTCTGCCCGCCAAAGTGAAC 61.452 55.000 0.00 0.00 0.00 3.18
1373 1419 2.556287 GCCAAAGTGAACGGAGCG 59.444 61.111 0.00 0.00 0.00 5.03
1374 1420 1.959226 GCCAAAGTGAACGGAGCGA 60.959 57.895 0.00 0.00 0.00 4.93
1378 1424 0.104304 AAAGTGAACGGAGCGACACT 59.896 50.000 0.00 0.00 43.72 3.55
1379 1425 0.597637 AAGTGAACGGAGCGACACTG 60.598 55.000 2.36 0.00 42.36 3.66
1380 1426 2.355837 TGAACGGAGCGACACTGC 60.356 61.111 0.00 0.00 0.00 4.40
1386 1432 2.874780 GAGCGACACTGCGTACGG 60.875 66.667 18.39 3.45 40.67 4.02
1397 1443 4.403137 CGTACGGACGGGCGTCAA 62.403 66.667 13.75 0.00 46.20 3.18
1398 1444 2.182537 GTACGGACGGGCGTCAAT 59.817 61.111 0.00 0.00 46.20 2.57
1402 1448 3.499737 GGACGGGCGTCAATGCAG 61.500 66.667 0.00 0.00 46.20 4.41
1406 1452 2.103538 GGGCGTCAATGCAGCATG 59.896 61.111 9.18 3.57 40.87 4.06
1407 1453 2.703798 GGGCGTCAATGCAGCATGT 61.704 57.895 9.18 0.00 39.31 3.21
1412 1458 1.621107 GTCAATGCAGCATGTTTCCG 58.379 50.000 9.18 0.00 39.31 4.30
1415 1461 2.546645 AATGCAGCATGTTTCCGGCG 62.547 55.000 9.18 0.00 39.31 6.46
1416 1462 3.430862 GCAGCATGTTTCCGGCGA 61.431 61.111 9.30 0.00 39.31 5.54
1418 1464 1.353103 CAGCATGTTTCCGGCGATC 59.647 57.895 9.30 0.00 0.00 3.69
1420 1466 2.112198 GCATGTTTCCGGCGATCCA 61.112 57.895 9.30 0.00 0.00 3.41
1436 1482 4.000331 GATCCATCGATCCATGTTCTGT 58.000 45.455 0.00 0.00 39.29 3.41
1437 1483 3.912496 TCCATCGATCCATGTTCTGTT 57.088 42.857 0.00 0.00 0.00 3.16
1438 1484 4.220693 TCCATCGATCCATGTTCTGTTT 57.779 40.909 0.00 0.00 0.00 2.83
1439 1485 4.191544 TCCATCGATCCATGTTCTGTTTC 58.808 43.478 0.00 0.00 0.00 2.78
1440 1486 3.313526 CCATCGATCCATGTTCTGTTTCC 59.686 47.826 0.00 0.00 0.00 3.13
1441 1487 2.616960 TCGATCCATGTTCTGTTTCCG 58.383 47.619 0.00 0.00 0.00 4.30
1442 1488 1.665679 CGATCCATGTTCTGTTTCCGG 59.334 52.381 0.00 0.00 0.00 5.14
1443 1489 1.401905 GATCCATGTTCTGTTTCCGGC 59.598 52.381 0.00 0.00 0.00 6.13
1444 1490 0.953471 TCCATGTTCTGTTTCCGGCG 60.953 55.000 0.00 0.00 0.00 6.46
1445 1491 0.953471 CCATGTTCTGTTTCCGGCGA 60.953 55.000 9.30 0.00 0.00 5.54
1447 1493 1.062587 CATGTTCTGTTTCCGGCGATC 59.937 52.381 9.30 0.00 0.00 3.69
1459 1505 2.202570 GCGATCGGTGTACGTGCT 60.203 61.111 18.30 0.00 44.69 4.40
1460 1506 1.804326 GCGATCGGTGTACGTGCTT 60.804 57.895 18.30 0.00 44.69 3.91
1461 1507 1.349259 GCGATCGGTGTACGTGCTTT 61.349 55.000 18.30 0.00 44.69 3.51
1463 1509 1.705256 GATCGGTGTACGTGCTTTCA 58.295 50.000 4.97 0.00 44.69 2.69
1465 1511 1.424403 TCGGTGTACGTGCTTTCATG 58.576 50.000 4.97 0.00 44.69 3.07
1466 1512 0.442310 CGGTGTACGTGCTTTCATGG 59.558 55.000 4.97 0.00 37.93 3.66
1468 1514 1.156736 GTGTACGTGCTTTCATGGCT 58.843 50.000 4.97 0.00 33.54 4.75
1469 1515 1.135972 GTGTACGTGCTTTCATGGCTG 60.136 52.381 4.97 0.00 33.54 4.85
1470 1516 0.179189 GTACGTGCTTTCATGGCTGC 60.179 55.000 0.00 0.00 33.54 5.25
1471 1517 0.605050 TACGTGCTTTCATGGCTGCA 60.605 50.000 0.00 0.00 33.54 4.41
1472 1518 4.565531 GTGCTTTCATGGCTGCAC 57.434 55.556 17.13 17.13 46.66 4.57
1473 1519 4.506039 TGCTTTCATGGCTGCACT 57.494 50.000 0.50 0.00 0.00 4.40
1474 1520 2.736197 TGCTTTCATGGCTGCACTT 58.264 47.368 0.50 0.00 0.00 3.16
1475 1521 0.315886 TGCTTTCATGGCTGCACTTG 59.684 50.000 0.50 0.12 0.00 3.16
1476 1522 0.389426 GCTTTCATGGCTGCACTTGG 60.389 55.000 0.50 0.00 0.00 3.61
1477 1523 0.245539 CTTTCATGGCTGCACTTGGG 59.754 55.000 0.50 0.00 0.00 4.12
1478 1524 1.186917 TTTCATGGCTGCACTTGGGG 61.187 55.000 0.50 0.00 0.00 4.96
1479 1525 3.766691 CATGGCTGCACTTGGGGC 61.767 66.667 0.50 0.00 0.00 5.80
1494 1540 1.723128 GGGGCTCCATCCATCCATGT 61.723 60.000 0.00 0.00 0.00 3.21
1496 1542 1.613836 GGCTCCATCCATCCATGTTC 58.386 55.000 0.00 0.00 0.00 3.18
1497 1543 1.144503 GGCTCCATCCATCCATGTTCT 59.855 52.381 0.00 0.00 0.00 3.01
1498 1544 2.228059 GCTCCATCCATCCATGTTCTG 58.772 52.381 0.00 0.00 0.00 3.02
1514 1560 5.119931 TGTTCTGTTTCCATTTCCATTCG 57.880 39.130 0.00 0.00 0.00 3.34
1523 1569 3.130869 TCCATTTCCATTCGGCATTTCAG 59.869 43.478 0.00 0.00 0.00 3.02
1527 1573 3.627395 TCCATTCGGCATTTCAGTACT 57.373 42.857 0.00 0.00 0.00 2.73
1530 1576 3.063997 CCATTCGGCATTTCAGTACTGTC 59.936 47.826 21.99 7.77 0.00 3.51
1538 1584 4.201628 GCATTTCAGTACTGTCGTTGCTAG 60.202 45.833 21.99 5.75 0.00 3.42
1539 1585 4.841443 TTTCAGTACTGTCGTTGCTAGA 57.159 40.909 21.99 0.00 0.00 2.43
1545 1591 5.236695 CAGTACTGTCGTTGCTAGAGCTATA 59.763 44.000 15.06 0.00 42.66 1.31
1546 1592 5.998981 AGTACTGTCGTTGCTAGAGCTATAT 59.001 40.000 0.00 0.00 42.66 0.86
1547 1593 7.117956 CAGTACTGTCGTTGCTAGAGCTATATA 59.882 40.741 15.06 0.00 42.66 0.86
1555 1601 8.454894 TCGTTGCTAGAGCTATATATCTTGAAG 58.545 37.037 2.72 0.00 42.66 3.02
1556 1602 7.219917 CGTTGCTAGAGCTATATATCTTGAAGC 59.780 40.741 2.72 0.00 42.66 3.86
1560 1606 8.031864 GCTAGAGCTATATATCTTGAAGCAACA 58.968 37.037 7.09 0.00 38.21 3.33
1563 1609 9.790344 AGAGCTATATATCTTGAAGCAACATTT 57.210 29.630 7.09 0.00 35.63 2.32
1577 1623 7.219917 TGAAGCAACATTTTCTAAACGAAACTG 59.780 33.333 0.00 0.00 43.79 3.16
1578 1624 6.791303 AGCAACATTTTCTAAACGAAACTGA 58.209 32.000 10.44 0.00 41.95 3.41
1580 1626 7.379529 AGCAACATTTTCTAAACGAAACTGATG 59.620 33.333 10.44 9.78 41.95 3.07
1581 1627 7.378461 GCAACATTTTCTAAACGAAACTGATGA 59.622 33.333 14.51 0.00 42.44 2.92
1582 1628 8.895845 CAACATTTTCTAAACGAAACTGATGAG 58.104 33.333 10.44 0.00 42.44 2.90
1584 1630 8.836413 ACATTTTCTAAACGAAACTGATGAGAA 58.164 29.630 10.44 0.00 41.95 2.87
1585 1631 9.663904 CATTTTCTAAACGAAACTGATGAGAAA 57.336 29.630 0.00 0.00 41.95 2.52
1586 1632 9.884465 ATTTTCTAAACGAAACTGATGAGAAAG 57.116 29.630 0.00 0.00 41.13 2.62
1587 1633 8.657074 TTTCTAAACGAAACTGATGAGAAAGA 57.343 30.769 0.00 0.00 36.72 2.52
1589 1635 4.974103 AACGAAACTGATGAGAAAGACG 57.026 40.909 0.00 0.00 0.00 4.18
1591 1637 5.117355 ACGAAACTGATGAGAAAGACGTA 57.883 39.130 0.00 0.00 0.00 3.57
1592 1638 4.916249 ACGAAACTGATGAGAAAGACGTAC 59.084 41.667 0.00 0.00 0.00 3.67
1593 1639 4.323868 CGAAACTGATGAGAAAGACGTACC 59.676 45.833 0.00 0.00 0.00 3.34
1595 1641 3.432378 ACTGATGAGAAAGACGTACCCT 58.568 45.455 0.00 0.00 0.00 4.34
1596 1642 3.444388 ACTGATGAGAAAGACGTACCCTC 59.556 47.826 0.00 0.00 0.00 4.30
1597 1643 2.758979 TGATGAGAAAGACGTACCCTCC 59.241 50.000 0.00 0.00 0.00 4.30
1599 1645 1.172175 GAGAAAGACGTACCCTCCGT 58.828 55.000 0.00 0.00 42.06 4.69
1600 1646 2.290260 TGAGAAAGACGTACCCTCCGTA 60.290 50.000 0.00 0.00 38.92 4.02
1601 1647 2.948315 GAGAAAGACGTACCCTCCGTAT 59.052 50.000 0.00 0.00 38.92 3.06
1602 1648 2.686915 AGAAAGACGTACCCTCCGTATG 59.313 50.000 0.00 0.00 38.92 2.39
1603 1649 1.396653 AAGACGTACCCTCCGTATGG 58.603 55.000 0.00 0.00 38.92 2.74
1604 1650 0.548031 AGACGTACCCTCCGTATGGA 59.452 55.000 3.02 3.02 43.88 3.41
1606 1652 0.753111 ACGTACCCTCCGTATGGACC 60.753 60.000 0.00 0.00 40.17 4.46
1608 1654 0.753111 GTACCCTCCGTATGGACCGT 60.753 60.000 0.00 1.57 40.17 4.83
1609 1655 0.752743 TACCCTCCGTATGGACCGTG 60.753 60.000 0.00 0.00 40.17 4.94
1610 1656 2.792947 CCCTCCGTATGGACCGTGG 61.793 68.421 0.00 0.00 40.17 4.94
1611 1657 2.056223 CCTCCGTATGGACCGTGGT 61.056 63.158 0.00 0.00 40.17 4.16
1612 1658 0.752743 CCTCCGTATGGACCGTGGTA 60.753 60.000 0.00 0.00 40.17 3.25
1613 1659 1.325355 CTCCGTATGGACCGTGGTAT 58.675 55.000 0.00 0.00 40.17 2.73
1615 1661 0.599204 CCGTATGGACCGTGGTATGC 60.599 60.000 0.00 0.00 37.49 3.14
1617 1663 1.068417 TATGGACCGTGGTATGCGC 59.932 57.895 0.00 0.00 0.00 6.09
1618 1664 2.372040 TATGGACCGTGGTATGCGCC 62.372 60.000 4.18 0.00 0.00 6.53
1647 1693 2.137810 GGAGAGCTCCTCTGTGTAGT 57.862 55.000 10.93 0.00 46.16 2.73
1648 1694 3.284793 GGAGAGCTCCTCTGTGTAGTA 57.715 52.381 10.93 0.00 46.16 1.82
1649 1695 2.946990 GGAGAGCTCCTCTGTGTAGTAC 59.053 54.545 10.93 0.00 46.16 2.73
1651 1697 3.616219 AGAGCTCCTCTGTGTAGTACTG 58.384 50.000 10.93 0.00 39.62 2.74
1652 1698 2.096248 AGCTCCTCTGTGTAGTACTGC 58.904 52.381 5.39 4.49 0.00 4.40
1653 1699 1.202200 GCTCCTCTGTGTAGTACTGCG 60.202 57.143 5.39 0.00 0.00 5.18
1655 1701 1.810755 TCCTCTGTGTAGTACTGCGTG 59.189 52.381 5.39 0.00 0.00 5.34
1657 1703 2.585845 CTCTGTGTAGTACTGCGTGTG 58.414 52.381 5.39 0.00 0.00 3.82
1661 1707 0.386113 TGTAGTACTGCGTGTGTGCA 59.614 50.000 5.39 0.00 43.95 4.57
1662 1708 1.000394 TGTAGTACTGCGTGTGTGCAT 60.000 47.619 5.39 0.00 45.26 3.96
1664 1710 0.249868 AGTACTGCGTGTGTGCATGT 60.250 50.000 0.00 0.00 45.26 3.21
1666 1712 0.531753 TACTGCGTGTGTGCATGTGT 60.532 50.000 0.00 0.00 45.26 3.72
1668 1714 0.110688 CTGCGTGTGTGCATGTGTAC 60.111 55.000 0.00 0.00 45.26 2.90
1669 1715 1.206578 GCGTGTGTGCATGTGTACC 59.793 57.895 0.00 0.00 34.24 3.34
1671 1717 0.790207 CGTGTGTGCATGTGTACCTC 59.210 55.000 0.00 0.00 0.00 3.85
1672 1718 1.156736 GTGTGTGCATGTGTACCTCC 58.843 55.000 0.00 0.00 0.00 4.30
1673 1719 0.761802 TGTGTGCATGTGTACCTCCA 59.238 50.000 0.00 0.00 0.00 3.86
1674 1720 1.350684 TGTGTGCATGTGTACCTCCAT 59.649 47.619 0.00 0.00 0.00 3.41
1675 1721 1.739466 GTGTGCATGTGTACCTCCATG 59.261 52.381 11.06 11.06 41.08 3.66
1676 1722 1.350684 TGTGCATGTGTACCTCCATGT 59.649 47.619 14.82 0.00 40.42 3.21
1677 1723 2.569404 TGTGCATGTGTACCTCCATGTA 59.431 45.455 14.82 10.03 40.42 2.29
1678 1724 3.199727 TGTGCATGTGTACCTCCATGTAT 59.800 43.478 14.82 0.00 40.42 2.29
1679 1725 3.561310 GTGCATGTGTACCTCCATGTATG 59.439 47.826 14.82 0.00 40.42 2.39
1681 1727 3.561310 GCATGTGTACCTCCATGTATGTG 59.439 47.826 14.82 0.00 40.42 3.21
1682 1728 4.769688 CATGTGTACCTCCATGTATGTGT 58.230 43.478 8.38 0.00 34.97 3.72
1683 1729 4.901197 TGTGTACCTCCATGTATGTGTT 57.099 40.909 0.00 0.00 0.00 3.32
1684 1730 4.827692 TGTGTACCTCCATGTATGTGTTC 58.172 43.478 0.00 0.00 0.00 3.18
1685 1731 3.863424 GTGTACCTCCATGTATGTGTTCG 59.137 47.826 0.00 0.00 0.00 3.95
1686 1732 3.764972 TGTACCTCCATGTATGTGTTCGA 59.235 43.478 0.00 0.00 0.00 3.71
1687 1733 3.526931 ACCTCCATGTATGTGTTCGAG 57.473 47.619 0.00 0.00 0.00 4.04
1688 1734 2.832129 ACCTCCATGTATGTGTTCGAGT 59.168 45.455 0.00 0.00 0.00 4.18
1689 1735 3.119101 ACCTCCATGTATGTGTTCGAGTC 60.119 47.826 0.00 0.00 0.00 3.36
1690 1736 3.119137 CCTCCATGTATGTGTTCGAGTCA 60.119 47.826 0.00 0.00 0.00 3.41
1691 1737 4.442052 CCTCCATGTATGTGTTCGAGTCAT 60.442 45.833 0.00 0.00 0.00 3.06
1692 1738 5.084818 TCCATGTATGTGTTCGAGTCATT 57.915 39.130 0.00 0.00 0.00 2.57
1693 1739 4.869861 TCCATGTATGTGTTCGAGTCATTG 59.130 41.667 0.00 0.00 0.00 2.82
1694 1740 4.631377 CCATGTATGTGTTCGAGTCATTGT 59.369 41.667 0.00 0.00 0.00 2.71
1696 1742 4.877282 TGTATGTGTTCGAGTCATTGTGA 58.123 39.130 4.84 0.00 0.00 3.58
1697 1743 4.923281 TGTATGTGTTCGAGTCATTGTGAG 59.077 41.667 4.84 0.00 0.00 3.51
1699 1745 4.053469 TGTGTTCGAGTCATTGTGAGAA 57.947 40.909 0.00 0.00 0.00 2.87
1700 1746 4.438148 TGTGTTCGAGTCATTGTGAGAAA 58.562 39.130 0.00 0.00 0.00 2.52
1701 1747 5.056480 TGTGTTCGAGTCATTGTGAGAAAT 58.944 37.500 0.00 0.00 0.00 2.17
1702 1748 6.220201 TGTGTTCGAGTCATTGTGAGAAATA 58.780 36.000 0.00 0.00 0.00 1.40
1704 1750 7.225734 TGTGTTCGAGTCATTGTGAGAAATAAA 59.774 33.333 0.00 0.00 0.00 1.40
1705 1751 7.742089 GTGTTCGAGTCATTGTGAGAAATAAAG 59.258 37.037 0.00 0.00 0.00 1.85
1706 1752 7.655732 TGTTCGAGTCATTGTGAGAAATAAAGA 59.344 33.333 0.00 0.00 0.00 2.52
1707 1753 7.582435 TCGAGTCATTGTGAGAAATAAAGAC 57.418 36.000 0.00 0.00 30.35 3.01
1708 1754 7.151976 TCGAGTCATTGTGAGAAATAAAGACA 58.848 34.615 0.00 0.00 32.04 3.41
1709 1755 7.655732 TCGAGTCATTGTGAGAAATAAAGACAA 59.344 33.333 0.00 0.00 32.04 3.18
1710 1756 7.954248 CGAGTCATTGTGAGAAATAAAGACAAG 59.046 37.037 0.00 0.00 32.04 3.16
1711 1757 8.908786 AGTCATTGTGAGAAATAAAGACAAGA 57.091 30.769 0.00 0.00 32.04 3.02
1712 1758 9.512588 AGTCATTGTGAGAAATAAAGACAAGAT 57.487 29.630 0.00 0.00 32.04 2.40
1719 1765 9.979270 GTGAGAAATAAAGACAAGATACATGTG 57.021 33.333 9.11 0.00 0.00 3.21
1725 1771 9.897744 AATAAAGACAAGATACATGTGTTTGTG 57.102 29.630 21.47 12.04 42.21 3.33
1726 1772 5.362556 AGACAAGATACATGTGTTTGTGC 57.637 39.130 21.47 15.11 32.58 4.57
1727 1773 4.083855 AGACAAGATACATGTGTTTGTGCG 60.084 41.667 21.47 3.09 32.58 5.34
1728 1774 2.900122 AGATACATGTGTTTGTGCGC 57.100 45.000 9.11 0.00 0.00 6.09
1729 1775 1.468520 AGATACATGTGTTTGTGCGCC 59.531 47.619 9.11 0.00 0.00 6.53
1730 1776 1.198867 GATACATGTGTTTGTGCGCCA 59.801 47.619 9.11 0.00 0.00 5.69
1731 1777 1.242989 TACATGTGTTTGTGCGCCAT 58.757 45.000 9.11 0.00 0.00 4.40
1732 1778 0.318869 ACATGTGTTTGTGCGCCATG 60.319 50.000 15.90 15.90 0.00 3.66
1751 2079 4.003011 CGTTCGTCGCCGGCAAAA 62.003 61.111 28.98 11.49 33.95 2.44
1752 2080 2.559330 GTTCGTCGCCGGCAAAAT 59.441 55.556 28.98 0.00 33.95 1.82
1753 2081 1.081708 GTTCGTCGCCGGCAAAATT 60.082 52.632 28.98 0.00 33.95 1.82
1754 2082 1.081774 TTCGTCGCCGGCAAAATTG 60.082 52.632 28.98 9.08 33.95 2.32
1755 2083 1.787057 TTCGTCGCCGGCAAAATTGT 61.787 50.000 28.98 0.00 33.95 2.71
1756 2084 2.080062 CGTCGCCGGCAAAATTGTG 61.080 57.895 28.98 7.38 0.00 3.33
1757 2085 1.732683 GTCGCCGGCAAAATTGTGG 60.733 57.895 28.98 6.54 0.00 4.17
1758 2086 2.196925 TCGCCGGCAAAATTGTGGT 61.197 52.632 28.98 0.00 0.00 4.16
1759 2087 0.889638 TCGCCGGCAAAATTGTGGTA 60.890 50.000 28.98 0.00 0.00 3.25
1760 2088 0.172352 CGCCGGCAAAATTGTGGTAT 59.828 50.000 28.98 0.00 0.00 2.73
1761 2089 1.797348 CGCCGGCAAAATTGTGGTATC 60.797 52.381 28.98 0.00 0.00 2.24
1762 2090 1.476488 GCCGGCAAAATTGTGGTATCT 59.524 47.619 24.80 0.00 0.00 1.98
1763 2091 2.479560 GCCGGCAAAATTGTGGTATCTC 60.480 50.000 24.80 0.00 0.00 2.75
1764 2092 2.099098 CCGGCAAAATTGTGGTATCTCC 59.901 50.000 0.00 0.00 0.00 3.71
1766 2094 3.443681 CGGCAAAATTGTGGTATCTCCTT 59.556 43.478 0.00 0.00 37.07 3.36
1770 2098 5.673818 GCAAAATTGTGGTATCTCCTTCGTC 60.674 44.000 0.00 0.00 37.07 4.20
1771 2099 5.422214 AAATTGTGGTATCTCCTTCGTCT 57.578 39.130 0.00 0.00 37.07 4.18
1776 2104 5.064558 TGTGGTATCTCCTTCGTCTATCTC 58.935 45.833 0.00 0.00 37.07 2.75
1779 2107 5.163184 TGGTATCTCCTTCGTCTATCTCTGT 60.163 44.000 0.00 0.00 37.07 3.41
1780 2108 5.410439 GGTATCTCCTTCGTCTATCTCTGTC 59.590 48.000 0.00 0.00 0.00 3.51
1781 2109 3.811083 TCTCCTTCGTCTATCTCTGTCC 58.189 50.000 0.00 0.00 0.00 4.02
1783 2111 1.604755 CCTTCGTCTATCTCTGTCCGG 59.395 57.143 0.00 0.00 0.00 5.14
1784 2112 1.002251 CTTCGTCTATCTCTGTCCGGC 60.002 57.143 0.00 0.00 0.00 6.13
1788 2116 2.605823 CGTCTATCTCTGTCCGGCATTC 60.606 54.545 0.00 0.00 0.00 2.67
1789 2117 1.609072 TCTATCTCTGTCCGGCATTCG 59.391 52.381 0.00 0.00 38.88 3.34
1793 2121 1.078759 CTCTGTCCGGCATTCGTGTC 61.079 60.000 0.00 0.00 37.11 3.67
1799 2127 3.124921 GGCATTCGTGTCGGGTGG 61.125 66.667 0.00 0.00 0.00 4.61
1800 2128 3.124921 GCATTCGTGTCGGGTGGG 61.125 66.667 0.00 0.00 0.00 4.61
1801 2129 3.124921 CATTCGTGTCGGGTGGGC 61.125 66.667 0.00 0.00 0.00 5.36
1802 2130 3.632080 ATTCGTGTCGGGTGGGCA 61.632 61.111 0.00 0.00 0.00 5.36
1803 2131 3.605749 ATTCGTGTCGGGTGGGCAG 62.606 63.158 0.00 0.00 0.00 4.85
1842 2206 4.608948 AGTAGAGCAATTAATAGCGCCT 57.391 40.909 2.29 0.00 35.48 5.52
1843 2207 4.310769 AGTAGAGCAATTAATAGCGCCTG 58.689 43.478 2.29 0.00 35.48 4.85
1845 2209 4.013267 AGAGCAATTAATAGCGCCTGAT 57.987 40.909 2.29 0.00 35.48 2.90
1855 2219 4.989279 ATAGCGCCTGATTTGACAAATT 57.011 36.364 14.46 0.14 0.00 1.82
1856 2220 3.221964 AGCGCCTGATTTGACAAATTC 57.778 42.857 14.46 8.63 0.00 2.17
1857 2221 2.557924 AGCGCCTGATTTGACAAATTCA 59.442 40.909 14.46 12.13 0.00 2.57
1858 2222 3.194116 AGCGCCTGATTTGACAAATTCAT 59.806 39.130 14.46 0.00 32.84 2.57
1869 2233 3.442273 TGACAAATTCATCCCCTAAACGC 59.558 43.478 0.00 0.00 0.00 4.84
1875 2239 1.991167 ATCCCCTAAACGCCCACGA 60.991 57.895 0.00 0.00 43.93 4.35
1879 2243 1.427819 CCTAAACGCCCACGAATGC 59.572 57.895 0.00 0.00 43.93 3.56
1905 2269 4.008933 GTGAGCCCGGACAGCACT 62.009 66.667 0.73 0.00 0.00 4.40
1917 2281 1.484240 GACAGCACTAGATGGCTCCTT 59.516 52.381 0.00 0.00 35.88 3.36
1932 2296 3.391296 GGCTCCTTGTATATCCTGGACAA 59.609 47.826 0.00 0.00 0.00 3.18
1933 2297 4.381411 GCTCCTTGTATATCCTGGACAAC 58.619 47.826 0.00 0.00 0.00 3.32
1936 2300 5.928976 TCCTTGTATATCCTGGACAACATG 58.071 41.667 0.00 6.23 0.00 3.21
1941 2305 6.119536 TGTATATCCTGGACAACATGGAAAC 58.880 40.000 0.00 0.00 32.58 2.78
1942 2306 2.286365 TCCTGGACAACATGGAAACC 57.714 50.000 0.00 0.00 0.00 3.27
1956 2320 4.125124 TGGAAACCCTCAAATCCATGAA 57.875 40.909 0.00 0.00 37.05 2.57
2033 2397 9.328845 AGCAAAATAAATCACTGTTCAACAATT 57.671 25.926 0.00 0.00 0.00 2.32
2035 2399 9.782028 CAAAATAAATCACTGTTCAACAATTCG 57.218 29.630 0.00 0.00 0.00 3.34
2049 2413 6.450545 TCAACAATTCGAACATGCCAAAATA 58.549 32.000 0.00 0.00 0.00 1.40
2062 2426 7.222872 ACATGCCAAAATAAAATTCAAGTCCA 58.777 30.769 0.00 0.00 0.00 4.02
2069 2433 5.880054 ATAAAATTCAAGTCCAGACCACG 57.120 39.130 0.00 0.00 0.00 4.94
2080 2444 0.104120 CAGACCACGACTGACCAACA 59.896 55.000 0.00 0.00 37.54 3.33
2119 2483 1.746615 GCCATCCGTGTCATGTGCT 60.747 57.895 0.00 0.00 0.00 4.40
2120 2484 1.709147 GCCATCCGTGTCATGTGCTC 61.709 60.000 0.00 0.00 0.00 4.26
2128 2492 2.435410 TCATGTGCTCTGCCGCAG 60.435 61.111 14.62 14.62 41.21 5.18
2129 2493 4.175489 CATGTGCTCTGCCGCAGC 62.175 66.667 15.98 6.58 41.21 5.25
2135 2499 4.790962 CTCTGCCGCAGCCACCAT 62.791 66.667 15.98 0.00 38.69 3.55
2136 2500 4.783621 TCTGCCGCAGCCACCATC 62.784 66.667 15.98 0.00 38.69 3.51
2137 2501 4.790962 CTGCCGCAGCCACCATCT 62.791 66.667 7.61 0.00 38.69 2.90
2140 2504 2.360350 CCGCAGCCACCATCTGTT 60.360 61.111 0.00 0.00 34.21 3.16
2141 2505 2.401766 CCGCAGCCACCATCTGTTC 61.402 63.158 0.00 0.00 34.21 3.18
2142 2506 2.401766 CGCAGCCACCATCTGTTCC 61.402 63.158 0.00 0.00 34.21 3.62
2143 2507 1.303561 GCAGCCACCATCTGTTCCA 60.304 57.895 0.00 0.00 34.21 3.53
2144 2508 0.682209 GCAGCCACCATCTGTTCCAT 60.682 55.000 0.00 0.00 34.21 3.41
2145 2509 1.100510 CAGCCACCATCTGTTCCATG 58.899 55.000 0.00 0.00 0.00 3.66
2146 2510 0.700564 AGCCACCATCTGTTCCATGT 59.299 50.000 0.00 0.00 0.00 3.21
2147 2511 1.098050 GCCACCATCTGTTCCATGTC 58.902 55.000 0.00 0.00 0.00 3.06
2148 2512 1.755179 CCACCATCTGTTCCATGTCC 58.245 55.000 0.00 0.00 0.00 4.02
2149 2513 1.372582 CACCATCTGTTCCATGTCCG 58.627 55.000 0.00 0.00 0.00 4.79
2150 2514 0.392998 ACCATCTGTTCCATGTCCGC 60.393 55.000 0.00 0.00 0.00 5.54
2151 2515 0.107508 CCATCTGTTCCATGTCCGCT 60.108 55.000 0.00 0.00 0.00 5.52
2152 2516 1.012086 CATCTGTTCCATGTCCGCTG 58.988 55.000 0.00 0.00 0.00 5.18
2153 2517 0.745845 ATCTGTTCCATGTCCGCTGC 60.746 55.000 0.00 0.00 0.00 5.25
2154 2518 1.376424 CTGTTCCATGTCCGCTGCT 60.376 57.895 0.00 0.00 0.00 4.24
2173 2537 4.193334 CCATCGACGCTCTCGCCA 62.193 66.667 0.00 0.00 42.62 5.69
2258 2689 6.115446 TCTTCTTGAGGCGACATTATGAATT 58.885 36.000 0.00 0.00 0.00 2.17
2261 2692 6.057533 TCTTGAGGCGACATTATGAATTGAT 58.942 36.000 0.00 0.00 0.00 2.57
2265 2697 7.864686 TGAGGCGACATTATGAATTGATAAAG 58.135 34.615 1.33 0.25 0.00 1.85
2324 2756 8.926710 AGTTTTACATCTTCTGTATCAAAGTCG 58.073 33.333 0.00 0.00 40.02 4.18
2326 2758 5.661056 ACATCTTCTGTATCAAAGTCGGA 57.339 39.130 0.00 0.00 35.91 4.55
2348 2780 9.706691 TCGGATTATAATTTTGGTGATAGAGAC 57.293 33.333 0.00 0.00 0.00 3.36
2357 2789 8.723942 ATTTTGGTGATAGAGACTGACAATAC 57.276 34.615 0.00 0.00 0.00 1.89
2362 2794 7.039011 TGGTGATAGAGACTGACAATACACTTT 60.039 37.037 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.690719 CAACCCTACGCGGCACCA 62.691 66.667 12.47 0.00 0.00 4.17
23 24 4.077184 CCTCAACCCTACGCGGCA 62.077 66.667 12.47 0.00 0.00 5.69
439 442 0.441533 GTCGCTCTGTCGTCTTCGTA 59.558 55.000 0.00 0.00 38.33 3.43
444 447 3.432588 CCCGTCGCTCTGTCGTCT 61.433 66.667 0.00 0.00 0.00 4.18
485 509 4.690719 CCGCCACCACCGTTGCTA 62.691 66.667 0.00 0.00 0.00 3.49
518 548 3.056458 CACCTGCTACCACGGTCA 58.944 61.111 0.00 0.00 0.00 4.02
524 554 4.393155 CCGCTGCACCTGCTACCA 62.393 66.667 0.00 0.00 42.66 3.25
527 557 2.265739 CTTCCGCTGCACCTGCTA 59.734 61.111 0.00 0.00 42.66 3.49
528 558 3.630013 TCTTCCGCTGCACCTGCT 61.630 61.111 0.00 0.00 42.66 4.24
557 588 6.101332 CCTACGTTTTACATGGTAGCAGTTA 58.899 40.000 0.00 0.00 32.87 2.24
563 594 5.062558 CCGAAACCTACGTTTTACATGGTAG 59.937 44.000 0.00 0.00 42.34 3.18
585 616 2.027625 GGGTGTCGAGCAGTTTCCG 61.028 63.158 0.00 0.00 0.00 4.30
639 672 6.477253 TGTAGCATTGTATTGTACCCTTTGA 58.523 36.000 0.00 0.00 0.00 2.69
734 767 5.989168 TGTAGAAAATAATCGATGTCGGCAT 59.011 36.000 0.00 0.00 40.29 4.40
764 797 0.179037 TCTAGCTCCCATGCATGCAC 60.179 55.000 25.37 9.27 34.99 4.57
820 853 3.811497 GCCTTCAAAATGCAAGAGCTTTT 59.189 39.130 0.00 0.00 46.34 2.27
836 869 1.413118 TGTGTCTGTCTCAGCCTTCA 58.587 50.000 0.00 0.00 0.00 3.02
956 990 2.113986 GCTGGGCAACTGTGGAGT 59.886 61.111 0.00 0.00 0.00 3.85
974 1016 2.288273 GCTAGCTAATCGATCCGTTGGT 60.288 50.000 7.70 0.00 0.00 3.67
975 1017 2.029828 AGCTAGCTAATCGATCCGTTGG 60.030 50.000 17.69 0.00 0.00 3.77
979 1021 2.747989 TGGTAGCTAGCTAATCGATCCG 59.252 50.000 25.74 0.00 0.00 4.18
980 1022 4.440802 CCATGGTAGCTAGCTAATCGATCC 60.441 50.000 25.74 20.32 0.00 3.36
982 1024 4.158764 GTCCATGGTAGCTAGCTAATCGAT 59.841 45.833 25.74 13.93 0.00 3.59
983 1025 3.506455 GTCCATGGTAGCTAGCTAATCGA 59.494 47.826 25.74 12.12 0.00 3.59
984 1026 3.255888 TGTCCATGGTAGCTAGCTAATCG 59.744 47.826 25.74 13.97 0.00 3.34
996 1038 2.552155 GCACACCTTTCTGTCCATGGTA 60.552 50.000 12.58 1.20 0.00 3.25
997 1039 1.819305 GCACACCTTTCTGTCCATGGT 60.819 52.381 12.58 0.00 0.00 3.55
998 1040 0.883833 GCACACCTTTCTGTCCATGG 59.116 55.000 4.97 4.97 0.00 3.66
999 1041 1.608055 TGCACACCTTTCTGTCCATG 58.392 50.000 0.00 0.00 0.00 3.66
1009 1051 5.396884 GGATTACTAGGAAGATGCACACCTT 60.397 44.000 7.85 3.34 34.42 3.50
1010 1052 4.101741 GGATTACTAGGAAGATGCACACCT 59.898 45.833 0.00 0.00 36.65 4.00
1011 1053 4.101741 AGGATTACTAGGAAGATGCACACC 59.898 45.833 0.00 0.00 0.00 4.16
1019 1062 3.899726 AGCACGAGGATTACTAGGAAGA 58.100 45.455 0.00 0.00 0.00 2.87
1022 1065 3.147629 GCTAGCACGAGGATTACTAGGA 58.852 50.000 10.63 0.00 32.69 2.94
1026 1069 2.099921 CACAGCTAGCACGAGGATTACT 59.900 50.000 18.83 0.00 0.00 2.24
1030 1073 1.142748 GCACAGCTAGCACGAGGAT 59.857 57.895 18.83 0.00 0.00 3.24
1114 1157 2.227968 GACATCAGTTGTCGCACCGC 62.228 60.000 0.00 0.00 45.00 5.68
1124 1167 2.809601 GCGACGCCGACATCAGTT 60.810 61.111 9.14 0.00 38.22 3.16
1125 1168 2.835701 AATGCGACGCCGACATCAGT 62.836 55.000 18.69 0.00 38.22 3.41
1138 1184 0.109039 TTCATGGACGACGAATGCGA 60.109 50.000 0.00 0.00 41.64 5.10
1143 1189 0.389817 CCAGCTTCATGGACGACGAA 60.390 55.000 0.00 0.00 43.57 3.85
1247 1293 4.570874 GATTCAGGGCTCCCGGGC 62.571 72.222 18.49 4.47 41.95 6.13
1253 1299 1.467920 CTTGTTGGGATTCAGGGCTC 58.532 55.000 0.00 0.00 0.00 4.70
1254 1300 0.040204 CCTTGTTGGGATTCAGGGCT 59.960 55.000 0.00 0.00 0.00 5.19
1265 1311 0.890996 GGTGCAGACTCCCTTGTTGG 60.891 60.000 0.00 0.00 0.00 3.77
1266 1312 0.179020 TGGTGCAGACTCCCTTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
1267 1313 0.109342 CTGGTGCAGACTCCCTTGTT 59.891 55.000 0.00 0.00 32.44 2.83
1268 1314 1.757306 CTGGTGCAGACTCCCTTGT 59.243 57.895 0.00 0.00 32.44 3.16
1269 1315 1.002868 CCTGGTGCAGACTCCCTTG 60.003 63.158 0.00 0.00 32.44 3.61
1272 1318 1.915769 ACTCCTGGTGCAGACTCCC 60.916 63.158 0.00 0.00 32.44 4.30
1274 1320 1.294780 CCACTCCTGGTGCAGACTC 59.705 63.158 0.00 0.00 44.08 3.36
1275 1321 3.476386 CCACTCCTGGTGCAGACT 58.524 61.111 0.00 0.00 44.08 3.24
1283 1329 4.704833 CGCACCCACCACTCCTGG 62.705 72.222 0.00 0.00 44.26 4.45
1284 1330 4.704833 CCGCACCCACCACTCCTG 62.705 72.222 0.00 0.00 0.00 3.86
1301 1347 0.182061 GTACGGATTTCCCTTCCCCC 59.818 60.000 0.00 0.00 0.00 5.40
1304 1350 2.629051 CAGTGTACGGATTTCCCTTCC 58.371 52.381 0.00 0.00 0.00 3.46
1328 1374 3.525800 AGTTATATGGGTTGCATCCCC 57.474 47.619 26.79 20.32 46.48 4.81
1331 1377 4.022849 GGCAGAAGTTATATGGGTTGCATC 60.023 45.833 0.00 0.00 32.24 3.91
1338 1384 1.523758 GCGGGCAGAAGTTATATGGG 58.476 55.000 0.00 0.00 0.00 4.00
1339 1385 1.202758 TGGCGGGCAGAAGTTATATGG 60.203 52.381 0.00 0.00 0.00 2.74
1340 1386 2.254546 TGGCGGGCAGAAGTTATATG 57.745 50.000 0.00 0.00 0.00 1.78
1341 1387 3.214328 CTTTGGCGGGCAGAAGTTATAT 58.786 45.455 3.91 0.00 0.00 0.86
1342 1388 2.026636 ACTTTGGCGGGCAGAAGTTATA 60.027 45.455 18.93 0.00 0.00 0.98
1343 1389 1.271926 ACTTTGGCGGGCAGAAGTTAT 60.272 47.619 18.93 5.07 0.00 1.89
1345 1391 1.152756 ACTTTGGCGGGCAGAAGTT 60.153 52.632 18.93 9.28 0.00 2.66
1348 1394 1.152860 TTCACTTTGGCGGGCAGAA 60.153 52.632 3.91 2.07 0.00 3.02
1349 1395 1.896660 GTTCACTTTGGCGGGCAGA 60.897 57.895 3.91 0.00 0.00 4.26
1350 1396 2.644992 GTTCACTTTGGCGGGCAG 59.355 61.111 3.91 0.00 0.00 4.85
1356 1402 1.959226 TCGCTCCGTTCACTTTGGC 60.959 57.895 0.00 0.00 0.00 4.52
1357 1403 0.878523 TGTCGCTCCGTTCACTTTGG 60.879 55.000 0.00 0.00 0.00 3.28
1358 1404 0.232303 GTGTCGCTCCGTTCACTTTG 59.768 55.000 0.00 0.00 33.46 2.77
1359 1405 0.104304 AGTGTCGCTCCGTTCACTTT 59.896 50.000 10.36 0.00 38.73 2.66
1361 1407 1.007271 CAGTGTCGCTCCGTTCACT 60.007 57.895 10.36 10.36 40.68 3.41
1362 1408 2.658707 GCAGTGTCGCTCCGTTCAC 61.659 63.158 0.00 0.00 35.05 3.18
1367 1413 2.874780 GTACGCAGTGTCGCTCCG 60.875 66.667 0.00 0.00 45.73 4.63
1371 1417 3.170585 GTCCGTACGCAGTGTCGC 61.171 66.667 10.49 0.00 45.73 5.19
1381 1427 2.162754 CATTGACGCCCGTCCGTAC 61.163 63.158 17.06 0.00 43.97 3.67
1382 1428 2.182284 CATTGACGCCCGTCCGTA 59.818 61.111 17.06 4.46 43.97 4.02
1386 1432 4.166011 GCTGCATTGACGCCCGTC 62.166 66.667 13.45 13.45 44.77 4.79
1396 1442 1.216178 GCCGGAAACATGCTGCATT 59.784 52.632 13.38 0.00 0.00 3.56
1397 1443 2.887360 GCCGGAAACATGCTGCAT 59.113 55.556 9.81 9.81 0.00 3.96
1398 1444 3.736100 CGCCGGAAACATGCTGCA 61.736 61.111 5.05 4.13 0.00 4.41
1402 1448 1.447317 ATGGATCGCCGGAAACATGC 61.447 55.000 5.05 0.00 36.79 4.06
1404 1450 0.880278 CGATGGATCGCCGGAAACAT 60.880 55.000 5.05 0.76 43.84 2.71
1406 1452 3.319904 CGATGGATCGCCGGAAAC 58.680 61.111 5.05 0.00 43.84 2.78
1415 1461 4.000331 ACAGAACATGGATCGATGGATC 58.000 45.455 20.19 16.78 46.85 3.36
1416 1462 4.428294 AACAGAACATGGATCGATGGAT 57.572 40.909 20.19 9.78 34.96 3.41
1418 1464 3.313526 GGAAACAGAACATGGATCGATGG 59.686 47.826 20.19 6.43 0.00 3.51
1420 1466 3.198068 CGGAAACAGAACATGGATCGAT 58.802 45.455 0.00 0.00 0.00 3.59
1423 1469 1.401905 GCCGGAAACAGAACATGGATC 59.598 52.381 5.05 0.00 0.00 3.36
1424 1470 1.463674 GCCGGAAACAGAACATGGAT 58.536 50.000 5.05 0.00 0.00 3.41
1426 1472 0.953471 TCGCCGGAAACAGAACATGG 60.953 55.000 5.05 0.00 0.00 3.66
1427 1473 1.062587 GATCGCCGGAAACAGAACATG 59.937 52.381 5.05 0.00 0.00 3.21
1428 1474 1.369625 GATCGCCGGAAACAGAACAT 58.630 50.000 5.05 0.00 0.00 2.71
1430 1476 1.708027 CGATCGCCGGAAACAGAAC 59.292 57.895 5.05 0.00 33.91 3.01
1431 1477 4.178861 CGATCGCCGGAAACAGAA 57.821 55.556 5.05 0.00 33.91 3.02
1440 1486 2.947621 CACGTACACCGATCGCCG 60.948 66.667 10.32 4.93 40.70 6.46
1441 1487 3.252484 GCACGTACACCGATCGCC 61.252 66.667 10.32 0.00 40.70 5.54
1442 1488 1.349259 AAAGCACGTACACCGATCGC 61.349 55.000 10.32 0.00 40.70 4.58
1443 1489 0.638746 GAAAGCACGTACACCGATCG 59.361 55.000 8.51 8.51 40.70 3.69
1444 1490 1.705256 TGAAAGCACGTACACCGATC 58.295 50.000 0.00 0.00 40.70 3.69
1445 1491 1.999735 CATGAAAGCACGTACACCGAT 59.000 47.619 0.00 0.00 40.70 4.18
1447 1493 0.442310 CCATGAAAGCACGTACACCG 59.558 55.000 0.00 0.00 44.03 4.94
1452 1498 0.605050 TGCAGCCATGAAAGCACGTA 60.605 50.000 0.00 0.00 31.05 3.57
1456 1502 0.315886 CAAGTGCAGCCATGAAAGCA 59.684 50.000 0.00 0.00 34.10 3.91
1459 1505 1.186917 CCCCAAGTGCAGCCATGAAA 61.187 55.000 0.00 0.00 0.00 2.69
1460 1506 1.607178 CCCCAAGTGCAGCCATGAA 60.607 57.895 0.00 0.00 0.00 2.57
1461 1507 2.036098 CCCCAAGTGCAGCCATGA 59.964 61.111 0.00 0.00 0.00 3.07
1463 1509 3.951769 GAGCCCCAAGTGCAGCCAT 62.952 63.158 0.00 0.00 0.00 4.40
1466 1512 4.666253 TGGAGCCCCAAGTGCAGC 62.666 66.667 0.00 0.00 40.09 5.25
1475 1521 1.076192 CATGGATGGATGGAGCCCC 59.924 63.158 0.00 0.00 0.00 5.80
1476 1522 0.186873 AACATGGATGGATGGAGCCC 59.813 55.000 0.00 0.00 0.00 5.19
1477 1523 1.144503 AGAACATGGATGGATGGAGCC 59.855 52.381 0.00 0.00 0.00 4.70
1478 1524 2.228059 CAGAACATGGATGGATGGAGC 58.772 52.381 0.00 0.00 0.00 4.70
1479 1525 3.572632 ACAGAACATGGATGGATGGAG 57.427 47.619 0.00 0.00 0.00 3.86
1494 1540 3.056891 GCCGAATGGAAATGGAAACAGAA 60.057 43.478 0.00 0.00 40.81 3.02
1496 1542 2.230992 TGCCGAATGGAAATGGAAACAG 59.769 45.455 0.00 0.00 40.81 3.16
1497 1543 2.242926 TGCCGAATGGAAATGGAAACA 58.757 42.857 0.00 0.00 41.63 2.83
1498 1544 3.525268 ATGCCGAATGGAAATGGAAAC 57.475 42.857 0.00 0.00 37.49 2.78
1514 1560 2.412847 GCAACGACAGTACTGAAATGCC 60.413 50.000 29.30 13.08 0.00 4.40
1523 1569 2.923605 AGCTCTAGCAACGACAGTAC 57.076 50.000 4.54 0.00 45.16 2.73
1527 1573 7.390718 TCAAGATATATAGCTCTAGCAACGACA 59.609 37.037 0.00 0.00 45.16 4.35
1530 1576 7.219917 GCTTCAAGATATATAGCTCTAGCAACG 59.780 40.741 17.23 0.00 45.16 4.10
1545 1591 9.559958 CGTTTAGAAAATGTTGCTTCAAGATAT 57.440 29.630 0.00 0.00 27.29 1.63
1546 1592 8.779303 TCGTTTAGAAAATGTTGCTTCAAGATA 58.221 29.630 0.00 0.00 27.29 1.98
1547 1593 7.648142 TCGTTTAGAAAATGTTGCTTCAAGAT 58.352 30.769 0.00 0.00 0.00 2.40
1563 1609 7.096189 CGTCTTTCTCATCAGTTTCGTTTAGAA 60.096 37.037 0.00 0.00 37.01 2.10
1565 1611 6.144080 ACGTCTTTCTCATCAGTTTCGTTTAG 59.856 38.462 0.00 0.00 0.00 1.85
1566 1612 5.981315 ACGTCTTTCTCATCAGTTTCGTTTA 59.019 36.000 0.00 0.00 0.00 2.01
1570 1616 4.323868 GGTACGTCTTTCTCATCAGTTTCG 59.676 45.833 0.00 0.00 0.00 3.46
1577 1623 2.223525 CGGAGGGTACGTCTTTCTCATC 60.224 54.545 0.00 0.00 43.53 2.92
1578 1624 1.749634 CGGAGGGTACGTCTTTCTCAT 59.250 52.381 0.00 0.00 43.53 2.90
1580 1626 1.172175 ACGGAGGGTACGTCTTTCTC 58.828 55.000 0.00 0.00 41.25 2.87
1581 1627 2.496899 TACGGAGGGTACGTCTTTCT 57.503 50.000 0.00 0.00 44.37 2.52
1582 1628 2.223665 CCATACGGAGGGTACGTCTTTC 60.224 54.545 0.00 0.00 44.37 2.62
1584 1630 1.064463 TCCATACGGAGGGTACGTCTT 60.064 52.381 0.00 0.00 44.37 3.01
1585 1631 0.548031 TCCATACGGAGGGTACGTCT 59.452 55.000 0.00 0.00 44.37 4.18
1586 1632 0.665298 GTCCATACGGAGGGTACGTC 59.335 60.000 0.00 0.00 43.99 4.34
1587 1633 0.753111 GGTCCATACGGAGGGTACGT 60.753 60.000 0.00 0.00 43.99 3.57
1589 1635 0.753111 ACGGTCCATACGGAGGGTAC 60.753 60.000 0.00 0.00 43.99 3.34
1591 1637 2.056223 CACGGTCCATACGGAGGGT 61.056 63.158 0.00 0.00 43.99 4.34
1592 1638 2.792947 CCACGGTCCATACGGAGGG 61.793 68.421 0.00 0.00 43.99 4.30
1593 1639 0.752743 TACCACGGTCCATACGGAGG 60.753 60.000 0.00 0.00 43.99 4.30
1595 1641 1.034356 CATACCACGGTCCATACGGA 58.966 55.000 0.00 0.00 39.79 4.69
1596 1642 0.599204 GCATACCACGGTCCATACGG 60.599 60.000 0.00 0.00 35.23 4.02
1597 1643 0.937699 CGCATACCACGGTCCATACG 60.938 60.000 0.00 0.00 37.36 3.06
1599 1645 1.068417 GCGCATACCACGGTCCATA 59.932 57.895 0.30 0.00 0.00 2.74
1600 1646 2.203015 GCGCATACCACGGTCCAT 60.203 61.111 0.30 0.00 0.00 3.41
1601 1647 4.460683 GGCGCATACCACGGTCCA 62.461 66.667 10.83 0.00 0.00 4.02
1629 1675 3.625764 CAGTACTACACAGAGGAGCTCTC 59.374 52.174 14.64 9.23 38.99 3.20
1630 1676 3.616219 CAGTACTACACAGAGGAGCTCT 58.384 50.000 14.64 0.00 42.11 4.09
1631 1677 2.098443 GCAGTACTACACAGAGGAGCTC 59.902 54.545 4.71 4.71 0.00 4.09
1632 1678 2.096248 GCAGTACTACACAGAGGAGCT 58.904 52.381 0.00 0.00 0.00 4.09
1633 1679 1.202200 CGCAGTACTACACAGAGGAGC 60.202 57.143 0.00 0.00 0.00 4.70
1634 1680 2.085320 ACGCAGTACTACACAGAGGAG 58.915 52.381 0.00 0.00 41.94 3.69
1635 1681 1.810755 CACGCAGTACTACACAGAGGA 59.189 52.381 0.00 0.00 41.61 3.71
1636 1682 1.540267 ACACGCAGTACTACACAGAGG 59.460 52.381 0.00 0.00 41.61 3.69
1637 1683 2.031069 ACACACGCAGTACTACACAGAG 60.031 50.000 0.00 0.00 41.61 3.35
1638 1684 1.951602 ACACACGCAGTACTACACAGA 59.048 47.619 0.00 0.00 41.61 3.41
1639 1685 2.051423 CACACACGCAGTACTACACAG 58.949 52.381 0.00 0.00 41.61 3.66
1640 1686 1.866471 GCACACACGCAGTACTACACA 60.866 52.381 0.00 0.00 41.61 3.72
1641 1687 0.782384 GCACACACGCAGTACTACAC 59.218 55.000 0.00 0.00 41.61 2.90
1642 1688 0.386113 TGCACACACGCAGTACTACA 59.614 50.000 0.00 0.00 41.61 2.74
1643 1689 1.390123 CATGCACACACGCAGTACTAC 59.610 52.381 0.00 0.00 46.99 2.73
1645 1691 0.249868 ACATGCACACACGCAGTACT 60.250 50.000 0.00 0.00 46.99 2.73
1647 1693 0.531753 ACACATGCACACACGCAGTA 60.532 50.000 0.00 0.00 46.99 2.74
1648 1694 0.531753 TACACATGCACACACGCAGT 60.532 50.000 0.00 0.00 46.99 4.40
1649 1695 0.110688 GTACACATGCACACACGCAG 60.111 55.000 0.00 0.00 46.99 5.18
1651 1697 1.206578 GGTACACATGCACACACGC 59.793 57.895 0.00 0.00 0.00 5.34
1652 1698 0.790207 GAGGTACACATGCACACACG 59.210 55.000 0.00 0.00 0.00 4.49
1653 1699 1.156736 GGAGGTACACATGCACACAC 58.843 55.000 0.00 0.00 0.00 3.82
1655 1701 1.739466 CATGGAGGTACACATGCACAC 59.261 52.381 10.26 0.00 38.63 3.82
1657 1703 2.113860 ACATGGAGGTACACATGCAC 57.886 50.000 18.56 0.00 45.43 4.57
1661 1707 5.428253 GAACACATACATGGAGGTACACAT 58.572 41.667 0.00 0.00 0.00 3.21
1662 1708 4.619628 CGAACACATACATGGAGGTACACA 60.620 45.833 0.00 0.00 0.00 3.72
1664 1710 3.764972 TCGAACACATACATGGAGGTACA 59.235 43.478 0.00 0.00 0.00 2.90
1666 1712 4.021229 ACTCGAACACATACATGGAGGTA 58.979 43.478 0.00 0.00 0.00 3.08
1668 1714 3.119137 TGACTCGAACACATACATGGAGG 60.119 47.826 0.00 0.00 0.00 4.30
1669 1715 4.110036 TGACTCGAACACATACATGGAG 57.890 45.455 0.00 0.00 0.00 3.86
1671 1717 4.631377 ACAATGACTCGAACACATACATGG 59.369 41.667 0.00 0.00 0.00 3.66
1672 1718 5.348451 TCACAATGACTCGAACACATACATG 59.652 40.000 0.00 0.00 0.00 3.21
1673 1719 5.478407 TCACAATGACTCGAACACATACAT 58.522 37.500 0.00 0.00 0.00 2.29
1674 1720 4.877282 TCACAATGACTCGAACACATACA 58.123 39.130 0.00 0.00 0.00 2.29
1675 1721 5.161358 TCTCACAATGACTCGAACACATAC 58.839 41.667 0.00 0.00 0.00 2.39
1676 1722 5.385509 TCTCACAATGACTCGAACACATA 57.614 39.130 0.00 0.00 0.00 2.29
1677 1723 4.257267 TCTCACAATGACTCGAACACAT 57.743 40.909 0.00 0.00 0.00 3.21
1678 1724 3.726291 TCTCACAATGACTCGAACACA 57.274 42.857 0.00 0.00 0.00 3.72
1679 1725 5.597813 ATTTCTCACAATGACTCGAACAC 57.402 39.130 0.00 0.00 0.00 3.32
1681 1727 7.952637 GTCTTTATTTCTCACAATGACTCGAAC 59.047 37.037 0.00 0.00 0.00 3.95
1682 1728 7.655732 TGTCTTTATTTCTCACAATGACTCGAA 59.344 33.333 0.00 0.00 31.28 3.71
1683 1729 7.151976 TGTCTTTATTTCTCACAATGACTCGA 58.848 34.615 0.00 0.00 31.28 4.04
1684 1730 7.351414 TGTCTTTATTTCTCACAATGACTCG 57.649 36.000 0.00 0.00 31.28 4.18
1685 1731 8.993121 TCTTGTCTTTATTTCTCACAATGACTC 58.007 33.333 0.00 0.00 31.28 3.36
1686 1732 8.908786 TCTTGTCTTTATTTCTCACAATGACT 57.091 30.769 0.00 0.00 31.28 3.41
1692 1738 9.725019 ACATGTATCTTGTCTTTATTTCTCACA 57.275 29.630 0.00 0.00 0.00 3.58
1693 1739 9.979270 CACATGTATCTTGTCTTTATTTCTCAC 57.021 33.333 0.00 0.00 0.00 3.51
1694 1740 9.725019 ACACATGTATCTTGTCTTTATTTCTCA 57.275 29.630 0.00 0.00 0.00 3.27
1699 1745 9.897744 CACAAACACATGTATCTTGTCTTTATT 57.102 29.630 13.57 0.00 27.61 1.40
1700 1746 8.023128 GCACAAACACATGTATCTTGTCTTTAT 58.977 33.333 13.57 0.00 27.61 1.40
1701 1747 7.359595 GCACAAACACATGTATCTTGTCTTTA 58.640 34.615 13.57 0.00 27.61 1.85
1702 1748 6.208644 GCACAAACACATGTATCTTGTCTTT 58.791 36.000 13.57 0.00 27.61 2.52
1704 1750 4.083855 CGCACAAACACATGTATCTTGTCT 60.084 41.667 13.57 0.00 27.61 3.41
1705 1751 4.151070 CGCACAAACACATGTATCTTGTC 58.849 43.478 13.57 9.50 27.61 3.18
1706 1752 3.609175 GCGCACAAACACATGTATCTTGT 60.609 43.478 0.30 5.81 29.50 3.16
1707 1753 2.910482 GCGCACAAACACATGTATCTTG 59.090 45.455 0.30 5.15 30.84 3.02
1708 1754 2.095263 GGCGCACAAACACATGTATCTT 60.095 45.455 10.83 0.00 30.84 2.40
1709 1755 1.468520 GGCGCACAAACACATGTATCT 59.531 47.619 10.83 0.00 30.84 1.98
1710 1756 1.198867 TGGCGCACAAACACATGTATC 59.801 47.619 10.83 0.00 30.84 2.24
1711 1757 1.242989 TGGCGCACAAACACATGTAT 58.757 45.000 10.83 0.00 30.84 2.29
1712 1758 1.068679 CATGGCGCACAAACACATGTA 60.069 47.619 10.83 0.00 35.44 2.29
1713 1759 0.318869 CATGGCGCACAAACACATGT 60.319 50.000 10.83 0.00 35.44 3.21
1714 1760 1.009903 CCATGGCGCACAAACACATG 61.010 55.000 10.83 11.56 38.82 3.21
1716 1762 2.726909 CCATGGCGCACAAACACA 59.273 55.556 10.83 0.00 0.00 3.72
1741 2069 0.172352 ATACCACAATTTTGCCGGCG 59.828 50.000 23.90 8.78 0.00 6.46
1748 2076 5.805728 AGACGAAGGAGATACCACAATTTT 58.194 37.500 0.00 0.00 42.04 1.82
1751 2079 6.071984 AGATAGACGAAGGAGATACCACAAT 58.928 40.000 0.00 0.00 42.04 2.71
1752 2080 5.446860 AGATAGACGAAGGAGATACCACAA 58.553 41.667 0.00 0.00 42.04 3.33
1753 2081 5.050126 AGATAGACGAAGGAGATACCACA 57.950 43.478 0.00 0.00 42.04 4.17
1754 2082 5.180492 CAGAGATAGACGAAGGAGATACCAC 59.820 48.000 0.00 0.00 42.04 4.16
1755 2083 5.163184 ACAGAGATAGACGAAGGAGATACCA 60.163 44.000 0.00 0.00 42.04 3.25
1756 2084 5.310451 ACAGAGATAGACGAAGGAGATACC 58.690 45.833 0.00 0.00 39.35 2.73
1757 2085 5.410439 GGACAGAGATAGACGAAGGAGATAC 59.590 48.000 0.00 0.00 0.00 2.24
1758 2086 5.553123 GGACAGAGATAGACGAAGGAGATA 58.447 45.833 0.00 0.00 0.00 1.98
1759 2087 4.394729 GGACAGAGATAGACGAAGGAGAT 58.605 47.826 0.00 0.00 0.00 2.75
1760 2088 3.741700 CGGACAGAGATAGACGAAGGAGA 60.742 52.174 0.00 0.00 0.00 3.71
1761 2089 2.546368 CGGACAGAGATAGACGAAGGAG 59.454 54.545 0.00 0.00 0.00 3.69
1762 2090 2.562635 CGGACAGAGATAGACGAAGGA 58.437 52.381 0.00 0.00 0.00 3.36
1763 2091 1.604755 CCGGACAGAGATAGACGAAGG 59.395 57.143 0.00 0.00 0.00 3.46
1764 2092 1.002251 GCCGGACAGAGATAGACGAAG 60.002 57.143 5.05 0.00 0.00 3.79
1766 2094 0.107361 TGCCGGACAGAGATAGACGA 60.107 55.000 5.05 0.00 0.00 4.20
1770 2098 1.338337 ACGAATGCCGGACAGAGATAG 59.662 52.381 5.05 0.00 43.93 2.08
1771 2099 1.067060 CACGAATGCCGGACAGAGATA 59.933 52.381 5.05 0.00 43.93 1.98
1776 2104 2.444624 CGACACGAATGCCGGACAG 61.445 63.158 5.05 0.00 43.93 3.51
1779 2107 4.444838 CCCGACACGAATGCCGGA 62.445 66.667 5.05 0.00 44.29 5.14
1780 2108 4.752879 ACCCGACACGAATGCCGG 62.753 66.667 0.00 0.00 43.93 6.13
1781 2109 3.487202 CACCCGACACGAATGCCG 61.487 66.667 0.00 0.00 45.44 5.69
1783 2111 3.124921 CCCACCCGACACGAATGC 61.125 66.667 0.00 0.00 0.00 3.56
1784 2112 3.124921 GCCCACCCGACACGAATG 61.125 66.667 0.00 0.00 0.00 2.67
1799 2127 2.601367 ATGTGTGTTGGGGCTGCC 60.601 61.111 11.05 11.05 0.00 4.85
1800 2128 2.652530 CATGTGTGTTGGGGCTGC 59.347 61.111 0.00 0.00 0.00 5.25
1801 2129 3.368822 CCATGTGTGTTGGGGCTG 58.631 61.111 0.00 0.00 0.00 4.85
1808 2136 2.371841 TGCTCTACTTCCCATGTGTGTT 59.628 45.455 0.00 0.00 0.00 3.32
1809 2137 1.977854 TGCTCTACTTCCCATGTGTGT 59.022 47.619 0.00 0.00 0.00 3.72
1810 2138 2.768253 TGCTCTACTTCCCATGTGTG 57.232 50.000 0.00 0.00 0.00 3.82
1811 2139 4.307032 AATTGCTCTACTTCCCATGTGT 57.693 40.909 0.00 0.00 0.00 3.72
1822 2186 4.307432 TCAGGCGCTATTAATTGCTCTAC 58.693 43.478 17.71 6.97 0.00 2.59
1842 2206 7.576666 CGTTTAGGGGATGAATTTGTCAAATCA 60.577 37.037 11.19 10.92 40.50 2.57
1843 2207 6.751888 CGTTTAGGGGATGAATTTGTCAAATC 59.248 38.462 11.19 6.14 40.50 2.17
1845 2209 5.565834 GCGTTTAGGGGATGAATTTGTCAAA 60.566 40.000 0.00 0.00 40.50 2.69
1855 2219 1.605453 GTGGGCGTTTAGGGGATGA 59.395 57.895 0.00 0.00 0.00 2.92
1856 2220 1.817941 CGTGGGCGTTTAGGGGATG 60.818 63.158 0.00 0.00 0.00 3.51
1857 2221 1.555477 TTCGTGGGCGTTTAGGGGAT 61.555 55.000 0.00 0.00 39.49 3.85
1858 2222 1.555477 ATTCGTGGGCGTTTAGGGGA 61.555 55.000 0.00 0.00 39.49 4.81
1888 2252 2.564553 CTAGTGCTGTCCGGGCTCAC 62.565 65.000 19.64 19.64 0.00 3.51
1899 2263 1.209019 ACAAGGAGCCATCTAGTGCTG 59.791 52.381 8.52 0.00 38.11 4.41
1900 2264 1.577736 ACAAGGAGCCATCTAGTGCT 58.422 50.000 4.28 4.28 41.42 4.40
1905 2269 5.026121 CCAGGATATACAAGGAGCCATCTA 58.974 45.833 0.00 0.00 0.00 1.98
1917 2281 5.966853 TTCCATGTTGTCCAGGATATACA 57.033 39.130 0.00 0.00 0.00 2.29
1932 2296 3.541242 TGGATTTGAGGGTTTCCATGT 57.459 42.857 0.00 0.00 33.40 3.21
1936 2300 5.395657 GGATTTCATGGATTTGAGGGTTTCC 60.396 44.000 0.00 0.00 0.00 3.13
2004 2368 9.809096 TGTTGAACAGTGATTTATTTTGCTTTA 57.191 25.926 0.00 0.00 0.00 1.85
2033 2397 7.655328 ACTTGAATTTTATTTTGGCATGTTCGA 59.345 29.630 0.00 0.00 0.00 3.71
2035 2399 8.229811 GGACTTGAATTTTATTTTGGCATGTTC 58.770 33.333 0.00 0.00 0.00 3.18
2049 2413 3.564225 GTCGTGGTCTGGACTTGAATTTT 59.436 43.478 0.67 0.00 0.00 1.82
2062 2426 1.048601 ATGTTGGTCAGTCGTGGTCT 58.951 50.000 0.00 0.00 0.00 3.85
2069 2433 6.595326 TGAGTAATTCATCATGTTGGTCAGTC 59.405 38.462 3.98 1.77 0.00 3.51
2101 2465 1.709147 GAGCACATGACACGGATGGC 61.709 60.000 0.00 0.00 0.00 4.40
2119 2483 4.783621 GATGGTGGCTGCGGCAGA 62.784 66.667 32.72 12.47 39.19 4.26
2120 2484 4.790962 AGATGGTGGCTGCGGCAG 62.791 66.667 25.21 25.21 39.19 4.85
2138 2502 3.044059 GCAGCAGCGGACATGGAAC 62.044 63.158 0.00 0.00 0.00 3.62
2139 2503 2.747460 GCAGCAGCGGACATGGAA 60.747 61.111 0.00 0.00 0.00 3.53
2140 2504 4.783621 GGCAGCAGCGGACATGGA 62.784 66.667 0.00 0.00 43.41 3.41
2142 2506 2.827190 ATGGCAGCAGCGGACATG 60.827 61.111 13.79 0.00 43.41 3.21
2143 2507 2.515523 GATGGCAGCAGCGGACAT 60.516 61.111 14.50 14.50 43.41 3.06
2145 2509 4.819761 TCGATGGCAGCAGCGGAC 62.820 66.667 2.73 0.00 43.41 4.79
2146 2510 4.819761 GTCGATGGCAGCAGCGGA 62.820 66.667 2.73 0.00 43.41 5.54
2150 2514 3.260483 GAGCGTCGATGGCAGCAG 61.260 66.667 6.79 0.00 0.00 4.24
2151 2515 3.706563 GAGAGCGTCGATGGCAGCA 62.707 63.158 6.79 0.00 0.00 4.41
2152 2516 2.959071 GAGAGCGTCGATGGCAGC 60.959 66.667 6.79 0.00 0.00 5.25
2172 2536 6.591935 ACACATAACCAACATAGGGAGTATG 58.408 40.000 0.00 0.00 43.89 2.39
2173 2537 6.615726 AGACACATAACCAACATAGGGAGTAT 59.384 38.462 0.00 0.00 0.00 2.12
2243 2674 7.587757 GTGTCTTTATCAATTCATAATGTCGCC 59.412 37.037 0.00 0.00 0.00 5.54
2304 2736 5.661056 TCCGACTTTGATACAGAAGATGT 57.339 39.130 0.00 0.00 46.45 3.06
2316 2748 8.568676 TCACCAAAATTATAATCCGACTTTGA 57.431 30.769 16.11 5.23 0.00 2.69
2332 2764 8.321353 TGTATTGTCAGTCTCTATCACCAAAAT 58.679 33.333 0.00 0.00 0.00 1.82
2335 2767 6.437477 AGTGTATTGTCAGTCTCTATCACCAA 59.563 38.462 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.