Multiple sequence alignment - TraesCS3B01G544600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G544600
chr3B
100.000
2815
0
0
1
2815
782022031
782024845
0.000000e+00
5199
1
TraesCS3B01G544600
chr2A
96.793
2058
60
5
1
2054
755358478
755356423
0.000000e+00
3430
2
TraesCS3B01G544600
chr2D
95.720
2056
80
5
1
2053
355481735
355483785
0.000000e+00
3302
3
TraesCS3B01G544600
chr2D
91.183
465
31
3
1589
2053
193993453
193993907
8.560000e-175
623
4
TraesCS3B01G544600
chr5A
95.620
2055
81
7
1
2050
315534969
315537019
0.000000e+00
3288
5
TraesCS3B01G544600
chr7D
89.801
2059
198
9
1
2054
23562574
23564625
0.000000e+00
2628
6
TraesCS3B01G544600
chr7D
89.685
2065
201
9
1
2060
135768585
135770642
0.000000e+00
2623
7
TraesCS3B01G544600
chr7D
89.568
2061
197
12
1
2053
135764470
135762420
0.000000e+00
2599
8
TraesCS3B01G544600
chr7D
89.509
2059
204
9
1
2054
14171519
14169468
0.000000e+00
2595
9
TraesCS3B01G544600
chr5D
89.456
2058
205
9
1
2053
460677483
460679533
0.000000e+00
2588
10
TraesCS3B01G544600
chr5D
93.333
465
23
2
1589
2053
450667817
450667361
0.000000e+00
680
11
TraesCS3B01G544600
chr6D
89.451
2057
204
10
1
2052
402531714
402529666
0.000000e+00
2584
12
TraesCS3B01G544600
chr3D
89.831
767
72
6
2054
2815
585680772
585681537
0.000000e+00
979
13
TraesCS3B01G544600
chr4D
92.258
465
27
3
1589
2053
483639168
483638713
0.000000e+00
651
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G544600
chr3B
782022031
782024845
2814
False
5199
5199
100.000
1
2815
1
chr3B.!!$F1
2814
1
TraesCS3B01G544600
chr2A
755356423
755358478
2055
True
3430
3430
96.793
1
2054
1
chr2A.!!$R1
2053
2
TraesCS3B01G544600
chr2D
355481735
355483785
2050
False
3302
3302
95.720
1
2053
1
chr2D.!!$F2
2052
3
TraesCS3B01G544600
chr5A
315534969
315537019
2050
False
3288
3288
95.620
1
2050
1
chr5A.!!$F1
2049
4
TraesCS3B01G544600
chr7D
23562574
23564625
2051
False
2628
2628
89.801
1
2054
1
chr7D.!!$F1
2053
5
TraesCS3B01G544600
chr7D
135768585
135770642
2057
False
2623
2623
89.685
1
2060
1
chr7D.!!$F2
2059
6
TraesCS3B01G544600
chr7D
135762420
135764470
2050
True
2599
2599
89.568
1
2053
1
chr7D.!!$R2
2052
7
TraesCS3B01G544600
chr7D
14169468
14171519
2051
True
2595
2595
89.509
1
2054
1
chr7D.!!$R1
2053
8
TraesCS3B01G544600
chr5D
460677483
460679533
2050
False
2588
2588
89.456
1
2053
1
chr5D.!!$F1
2052
9
TraesCS3B01G544600
chr6D
402529666
402531714
2048
True
2584
2584
89.451
1
2052
1
chr6D.!!$R1
2051
10
TraesCS3B01G544600
chr3D
585680772
585681537
765
False
979
979
89.831
2054
2815
1
chr3D.!!$F1
761
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
25
26
1.237285
TTGCAAGGGAGAAGAAGCGC
61.237
55.000
0.0
0.0
0.0
5.92
F
993
996
2.981805
CTGGCATGATGTTTTGTTCACG
59.018
45.455
0.0
0.0
0.0
4.35
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1697
1703
1.619654
TGGCCAAACCATTCAGTCTG
58.380
50.0
0.61
0.0
46.36
3.51
R
2597
2609
0.036732
TGCCTCTGTTTTGGAGCGAT
59.963
50.0
0.00
0.0
0.00
4.58
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
25
26
1.237285
TTGCAAGGGAGAAGAAGCGC
61.237
55.000
0.00
0.00
0.00
5.92
447
450
4.966965
TCTAGAGTTCATGAAGGTCGAC
57.033
45.455
8.80
7.13
0.00
4.20
448
451
4.590918
TCTAGAGTTCATGAAGGTCGACT
58.409
43.478
16.46
1.21
0.00
4.18
453
456
5.007823
AGAGTTCATGAAGGTCGACTATACG
59.992
44.000
16.46
0.43
0.00
3.06
662
665
7.232330
CCTGAATCTTACTCTCAGTGATATGGA
59.768
40.741
0.00
0.00
35.78
3.41
674
677
5.879777
TCAGTGATATGGAAAAATCTTGCGA
59.120
36.000
0.00
0.00
0.00
5.10
833
836
6.531948
AGTCGAATAAAGAGTGTTCATGCTAC
59.468
38.462
0.00
0.00
0.00
3.58
857
860
6.126652
ACCAGATATCAAGCACCTGAGTTAAT
60.127
38.462
5.32
0.00
0.00
1.40
993
996
2.981805
CTGGCATGATGTTTTGTTCACG
59.018
45.455
0.00
0.00
0.00
4.35
1561
1565
7.545965
CGGATCAGTATTTGAGTTTGTTAGAGT
59.454
37.037
0.00
0.00
39.68
3.24
1570
1574
4.451096
TGAGTTTGTTAGAGTTGCGGATTC
59.549
41.667
0.00
0.00
0.00
2.52
1613
1619
4.979197
GCTTATCGTATCCTCTTGACTGTG
59.021
45.833
0.00
0.00
0.00
3.66
1664
1670
9.403583
AGGAGTTTCACAAAATTGAAGTTACTA
57.596
29.630
0.00
0.00
36.84
1.82
1697
1703
2.814336
GAGGTCAACAATGTCCCAAGAC
59.186
50.000
0.00
0.00
43.83
3.01
2017
2026
0.105246
TGGGCCCATTGGTGAAGTTT
60.105
50.000
24.45
0.00
0.00
2.66
2047
2056
0.375106
CTTCGAAATCCTTGAGCCGC
59.625
55.000
0.00
0.00
0.00
6.53
2064
2073
2.922234
CCCCTGCCTTCATCCTCC
59.078
66.667
0.00
0.00
0.00
4.30
2065
2074
2.507944
CCCTGCCTTCATCCTCCG
59.492
66.667
0.00
0.00
0.00
4.63
2068
2077
1.626356
CCTGCCTTCATCCTCCGGAA
61.626
60.000
5.23
0.00
34.34
4.30
2072
2081
2.014068
GCCTTCATCCTCCGGAACAAG
61.014
57.143
5.23
3.20
34.34
3.16
2076
2085
0.321564
CATCCTCCGGAACAAGTGCA
60.322
55.000
5.23
0.00
34.34
4.57
2078
2087
0.534203
TCCTCCGGAACAAGTGCAAC
60.534
55.000
5.23
0.00
0.00
4.17
2094
2103
2.637382
TGCAACTCCTTCCATCTACACA
59.363
45.455
0.00
0.00
0.00
3.72
2100
2109
3.449918
TCCTTCCATCTACACACATGGA
58.550
45.455
0.00
0.00
45.74
3.41
2118
2127
1.586422
GAGTTGCTGCTTGACTGTCA
58.414
50.000
6.36
6.36
0.00
3.58
2151
2160
1.278127
TGGGTGCTACAAGGAAGCTAC
59.722
52.381
0.00
0.00
40.73
3.58
2160
2169
1.625818
CAAGGAAGCTACTGAGGGTGT
59.374
52.381
0.00
0.00
0.00
4.16
2181
2190
1.153765
CAAGGCGAGAGTGCATCGA
60.154
57.895
12.18
0.00
42.76
3.59
2196
2205
0.249489
ATCGAGTTCTATGCGCCCAC
60.249
55.000
4.18
0.00
0.00
4.61
2203
2212
4.769063
TATGCGCCCACCACCACG
62.769
66.667
4.18
0.00
0.00
4.94
2227
2236
2.416747
CATCGTTGCTTCAAGACAGGA
58.583
47.619
0.00
0.00
0.00
3.86
2239
2248
0.617413
AGACAGGAGCATCAACTGGG
59.383
55.000
0.00
0.00
36.25
4.45
2241
2250
1.211457
GACAGGAGCATCAACTGGGAT
59.789
52.381
0.00
0.00
36.25
3.85
2271
2280
4.735132
ATGGTGTGGCGTCGGACG
62.735
66.667
25.18
25.18
45.88
4.79
2279
2288
1.081242
GGCGTCGGACGTCAAAGTA
60.081
57.895
28.18
0.00
46.84
2.24
2292
2301
3.982058
CGTCAAAGTATAGGAATCCGCTC
59.018
47.826
0.00
0.00
0.00
5.03
2300
2309
1.799933
AGGAATCCGCTCCTGAAGAT
58.200
50.000
0.00
0.00
44.56
2.40
2327
2336
2.925578
CATTGTTGCATGACGGTCAT
57.074
45.000
17.62
17.62
37.65
3.06
2328
2337
2.789208
CATTGTTGCATGACGGTCATC
58.211
47.619
20.27
14.95
34.28
2.92
2372
2381
2.128771
TATCCCTCTTTGCTGCAACC
57.871
50.000
15.72
0.00
0.00
3.77
2373
2382
0.407139
ATCCCTCTTTGCTGCAACCT
59.593
50.000
15.72
0.00
0.00
3.50
2374
2383
1.064003
TCCCTCTTTGCTGCAACCTA
58.936
50.000
15.72
0.00
0.00
3.08
2384
2394
7.282585
TCTTTGCTGCAACCTATATAGATTGT
58.717
34.615
15.72
2.07
0.00
2.71
2398
2408
2.893637
AGATTGTCATAGACGTGTGGC
58.106
47.619
0.00
0.00
34.95
5.01
2402
2412
0.801067
GTCATAGACGTGTGGCGGAC
60.801
60.000
0.00
0.00
46.52
4.79
2404
2414
3.060020
ATAGACGTGTGGCGGACGG
62.060
63.158
12.03
0.00
46.52
4.79
2408
2418
4.735132
CGTGTGGCGGACGGTGAT
62.735
66.667
0.48
0.00
36.85
3.06
2409
2419
3.118454
GTGTGGCGGACGGTGATG
61.118
66.667
0.00
0.00
0.00
3.07
2410
2420
4.386951
TGTGGCGGACGGTGATGG
62.387
66.667
0.00
0.00
0.00
3.51
2420
2430
3.443045
GGTGATGGTGCAAGGCCG
61.443
66.667
0.00
0.00
0.00
6.13
2450
2460
2.542907
CCCGTTGTTGCAAGCGACT
61.543
57.895
16.38
0.00
0.00
4.18
2458
2468
2.434884
GCAAGCGACTGCAGGCTA
60.435
61.111
19.55
0.00
46.23
3.93
2521
2531
1.804396
CGGCCTTCCACAATGTTGCA
61.804
55.000
0.00
0.00
0.00
4.08
2523
2533
0.664166
GCCTTCCACAATGTTGCACG
60.664
55.000
0.00
0.00
0.00
5.34
2558
2570
0.844661
TGGGGGCTGTAACATGAGGT
60.845
55.000
0.00
0.00
0.00
3.85
2584
2596
1.303236
GTGCTGTATGTGCCCACCA
60.303
57.895
0.00
0.00
0.00
4.17
2587
2599
1.745115
CTGTATGTGCCCACCACCG
60.745
63.158
0.00
0.00
44.01
4.94
2589
2601
3.641454
TATGTGCCCACCACCGCA
61.641
61.111
0.00
0.00
44.01
5.69
2597
2609
1.377072
CCACCACCGCATGTCATCA
60.377
57.895
0.00
0.00
0.00
3.07
2612
2624
3.002791
GTCATCATCGCTCCAAAACAGA
58.997
45.455
0.00
0.00
0.00
3.41
2661
2673
2.029964
GTGCCGTCGGACCTCAAA
59.970
61.111
17.49
0.00
0.00
2.69
2665
2677
0.175073
GCCGTCGGACCTCAAAGTAT
59.825
55.000
17.49
0.00
0.00
2.12
2667
2679
1.203994
CCGTCGGACCTCAAAGTATGT
59.796
52.381
4.91
0.00
0.00
2.29
2674
2686
3.871594
GGACCTCAAAGTATGTGAATCCG
59.128
47.826
0.00
0.00
27.24
4.18
2677
2689
3.310774
CCTCAAAGTATGTGAATCCGCTG
59.689
47.826
0.00
0.00
27.24
5.18
2678
2690
3.270027
TCAAAGTATGTGAATCCGCTGG
58.730
45.455
0.00
0.00
0.00
4.85
2682
2694
0.251634
TATGTGAATCCGCTGGCACA
59.748
50.000
0.00
0.00
44.31
4.57
2700
2713
0.888619
CAGACGAGGAGGTGTTGCTA
59.111
55.000
0.00
0.00
0.00
3.49
2706
2719
1.740025
GAGGAGGTGTTGCTACATTGC
59.260
52.381
3.85
2.01
36.50
3.56
2709
2722
1.470098
GAGGTGTTGCTACATTGCAGG
59.530
52.381
3.85
0.00
44.27
4.85
2711
2724
0.454957
GTGTTGCTACATTGCAGGCG
60.455
55.000
3.85
0.00
44.27
5.52
2718
2731
1.129251
CTACATTGCAGGCGTTGAGTG
59.871
52.381
0.00
0.00
0.00
3.51
2730
2743
1.528586
CGTTGAGTGCTTCAAGTCCAG
59.471
52.381
4.74
0.00
46.09
3.86
2731
2744
2.565841
GTTGAGTGCTTCAAGTCCAGT
58.434
47.619
4.74
0.00
46.09
4.00
2733
2746
1.762370
TGAGTGCTTCAAGTCCAGTCA
59.238
47.619
0.00
0.00
36.78
3.41
2734
2747
2.139118
GAGTGCTTCAAGTCCAGTCAC
58.861
52.381
0.00
0.00
0.00
3.67
2735
2748
1.486310
AGTGCTTCAAGTCCAGTCACA
59.514
47.619
0.00
0.00
0.00
3.58
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
447
450
2.295885
AGTCCAAGTCCCGACGTATAG
58.704
52.381
0.00
0.00
36.20
1.31
448
451
2.425143
AGTCCAAGTCCCGACGTATA
57.575
50.000
0.00
0.00
36.20
1.47
453
456
5.293569
CACATTATAAAGTCCAAGTCCCGAC
59.706
44.000
0.00
0.00
0.00
4.79
483
486
8.628630
TCAAACCAACATATTCAAGTGTATCA
57.371
30.769
0.00
0.00
0.00
2.15
497
500
6.819284
ACATCTTGAACATTCAAACCAACAT
58.181
32.000
8.33
0.00
45.61
2.71
591
594
4.338879
ACAATGCTCTTGGATTAGTTGCT
58.661
39.130
4.90
0.00
32.89
3.91
833
836
3.834489
ACTCAGGTGCTTGATATCTGG
57.166
47.619
3.98
0.00
0.00
3.86
993
996
6.806739
GCAATTTCTTACTCACCATGTTTACC
59.193
38.462
0.00
0.00
0.00
2.85
1427
1430
5.516339
CCATGAGTGAAAGTGTTGACAAAAC
59.484
40.000
0.00
0.00
0.00
2.43
1570
1574
9.674824
GATAAGCAATTGAGACATTTGGATAAG
57.325
33.333
10.34
0.00
0.00
1.73
1613
1619
1.915614
CTGATGCAACAGTGACCGGC
61.916
60.000
15.39
0.00
33.73
6.13
1697
1703
1.619654
TGGCCAAACCATTCAGTCTG
58.380
50.000
0.61
0.00
46.36
3.51
1756
1762
6.237463
CGCAAAATCATCAATGACAATGTCAG
60.237
38.462
21.23
9.09
46.04
3.51
2047
2056
2.922234
GGAGGATGAAGGCAGGGG
59.078
66.667
0.00
0.00
0.00
4.79
2064
2073
1.264288
GAAGGAGTTGCACTTGTTCCG
59.736
52.381
0.00
0.00
33.16
4.30
2065
2074
1.609072
GGAAGGAGTTGCACTTGTTCC
59.391
52.381
0.00
0.88
34.97
3.62
2068
2077
2.107204
AGATGGAAGGAGTTGCACTTGT
59.893
45.455
0.00
0.00
36.75
3.16
2072
2081
3.003480
GTGTAGATGGAAGGAGTTGCAC
58.997
50.000
0.00
0.00
36.75
4.57
2076
2085
4.836825
CATGTGTGTAGATGGAAGGAGTT
58.163
43.478
0.00
0.00
0.00
3.01
2094
2103
1.202855
AGTCAAGCAGCAACTCCATGT
60.203
47.619
0.00
0.00
0.00
3.21
2100
2109
1.878088
CATGACAGTCAAGCAGCAACT
59.122
47.619
7.50
0.00
0.00
3.16
2118
2127
3.889859
AGCACCCAACATATCATCCAT
57.110
42.857
0.00
0.00
0.00
3.41
2151
2160
2.620112
CGCCTTGCAACACCCTCAG
61.620
63.158
0.00
0.00
0.00
3.35
2160
2169
2.110835
TGCACTCTCGCCTTGCAA
59.889
55.556
0.00
0.00
43.16
4.08
2181
2190
1.078426
GTGGTGGGCGCATAGAACT
60.078
57.895
10.83
0.00
0.00
3.01
2196
2205
2.668212
AACGATGGCACGTGGTGG
60.668
61.111
18.88
0.00
45.83
4.61
2203
2212
0.874390
TCTTGAAGCAACGATGGCAC
59.126
50.000
0.00
0.00
0.00
5.01
2239
2248
0.604578
ACCATTGCAACACTGGCATC
59.395
50.000
15.92
0.00
41.58
3.91
2241
2250
1.042003
ACACCATTGCAACACTGGCA
61.042
50.000
15.92
0.00
37.65
4.92
2246
2255
1.661197
CGCCACACCATTGCAACAC
60.661
57.895
0.00
0.00
0.00
3.32
2271
2280
4.039366
AGGAGCGGATTCCTATACTTTGAC
59.961
45.833
0.30
0.00
45.76
3.18
2279
2288
2.964209
TCTTCAGGAGCGGATTCCTAT
58.036
47.619
0.30
0.00
45.86
2.57
2292
2301
1.938577
CAATGCCGACTCATCTTCAGG
59.061
52.381
0.00
0.00
0.00
3.86
2320
2329
0.317160
TTGAAGCACTCGATGACCGT
59.683
50.000
0.00
0.00
39.75
4.83
2322
2331
1.996191
GACTTGAAGCACTCGATGACC
59.004
52.381
0.00
0.00
0.00
4.02
2325
2334
2.857152
GCTAGACTTGAAGCACTCGATG
59.143
50.000
0.00
0.00
38.63
3.84
2327
2336
1.202582
GGCTAGACTTGAAGCACTCGA
59.797
52.381
0.00
0.00
40.61
4.04
2328
2337
1.067565
TGGCTAGACTTGAAGCACTCG
60.068
52.381
0.00
0.00
40.61
4.18
2372
2381
7.698550
GCCACACGTCTATGACAATCTATATAG
59.301
40.741
3.10
3.10
32.09
1.31
2373
2382
7.535997
GCCACACGTCTATGACAATCTATATA
58.464
38.462
0.00
0.00
32.09
0.86
2374
2383
6.390721
GCCACACGTCTATGACAATCTATAT
58.609
40.000
0.00
0.00
32.09
0.86
2384
2394
1.509463
GTCCGCCACACGTCTATGA
59.491
57.895
0.00
0.00
41.42
2.15
2398
2408
2.358125
TTGCACCATCACCGTCCG
60.358
61.111
0.00
0.00
0.00
4.79
2399
2409
2.040544
CCTTGCACCATCACCGTCC
61.041
63.158
0.00
0.00
0.00
4.79
2402
2412
3.443045
GGCCTTGCACCATCACCG
61.443
66.667
0.00
0.00
0.00
4.94
2404
2414
2.359850
TCGGCCTTGCACCATCAC
60.360
61.111
0.00
0.00
0.00
3.06
2405
2415
2.359850
GTCGGCCTTGCACCATCA
60.360
61.111
0.00
0.00
0.00
3.07
2406
2416
3.134127
GGTCGGCCTTGCACCATC
61.134
66.667
0.00
0.00
0.00
3.51
2420
2430
4.778143
AACGGGGATGCTGCGGTC
62.778
66.667
0.00
0.00
0.00
4.79
2450
2460
2.688666
CCCTCCCAGTAGCCTGCA
60.689
66.667
0.00
0.00
37.38
4.41
2501
2511
1.080569
CAACATTGTGGAAGGCCGC
60.081
57.895
0.00
0.00
45.13
6.53
2511
2521
1.875963
GCTAGCCGTGCAACATTGT
59.124
52.632
2.29
0.00
35.74
2.71
2513
2523
2.398554
CCGCTAGCCGTGCAACATT
61.399
57.895
9.66
0.00
35.74
2.71
2541
2551
0.618458
TCACCTCATGTTACAGCCCC
59.382
55.000
0.00
0.00
0.00
5.80
2548
2560
3.081061
GCACCAATGTCACCTCATGTTA
58.919
45.455
0.00
0.00
0.00
2.41
2558
2570
1.811965
GCACATACAGCACCAATGTCA
59.188
47.619
0.00
0.00
31.60
3.58
2584
2596
0.877649
GAGCGATGATGACATGCGGT
60.878
55.000
0.00
0.00
38.90
5.68
2587
2599
1.302366
TTGGAGCGATGATGACATGC
58.698
50.000
0.00
0.00
36.82
4.06
2589
2601
3.346315
TGTTTTGGAGCGATGATGACAT
58.654
40.909
0.00
0.00
39.67
3.06
2597
2609
0.036732
TGCCTCTGTTTTGGAGCGAT
59.963
50.000
0.00
0.00
0.00
4.58
2661
2673
0.541392
TGCCAGCGGATTCACATACT
59.459
50.000
0.00
0.00
0.00
2.12
2665
2677
1.672030
CTGTGCCAGCGGATTCACA
60.672
57.895
0.00
3.21
37.78
3.58
2667
2679
1.375908
GTCTGTGCCAGCGGATTCA
60.376
57.895
0.00
0.00
0.00
2.57
2674
2686
2.125753
CTCCTCGTCTGTGCCAGC
60.126
66.667
0.00
0.00
0.00
4.85
2677
2689
2.100879
AACACCTCCTCGTCTGTGCC
62.101
60.000
0.00
0.00
31.98
5.01
2678
2690
0.946221
CAACACCTCCTCGTCTGTGC
60.946
60.000
0.00
0.00
31.98
4.57
2682
2694
0.889306
GTAGCAACACCTCCTCGTCT
59.111
55.000
0.00
0.00
0.00
4.18
2689
2701
1.470098
CCTGCAATGTAGCAACACCTC
59.530
52.381
0.00
0.00
45.13
3.85
2690
2702
1.538047
CCTGCAATGTAGCAACACCT
58.462
50.000
0.00
0.00
45.13
4.00
2700
2713
1.951510
CACTCAACGCCTGCAATGT
59.048
52.632
0.00
0.00
0.00
2.71
2706
2719
0.236711
CTTGAAGCACTCAACGCCTG
59.763
55.000
0.00
0.00
39.20
4.85
2709
2722
0.235926
GGACTTGAAGCACTCAACGC
59.764
55.000
0.00
0.00
39.20
4.84
2711
2724
2.545946
GACTGGACTTGAAGCACTCAAC
59.454
50.000
0.00
0.00
39.20
3.18
2718
2731
2.565841
AGTTGTGACTGGACTTGAAGC
58.434
47.619
0.00
0.00
33.99
3.86
2730
2743
3.248602
CAGCAAAGAGGTGTAGTTGTGAC
59.751
47.826
0.00
0.00
40.80
3.67
2731
2744
3.466836
CAGCAAAGAGGTGTAGTTGTGA
58.533
45.455
0.00
0.00
40.80
3.58
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.