Multiple sequence alignment - TraesCS3B01G544600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G544600 chr3B 100.000 2815 0 0 1 2815 782022031 782024845 0.000000e+00 5199
1 TraesCS3B01G544600 chr2A 96.793 2058 60 5 1 2054 755358478 755356423 0.000000e+00 3430
2 TraesCS3B01G544600 chr2D 95.720 2056 80 5 1 2053 355481735 355483785 0.000000e+00 3302
3 TraesCS3B01G544600 chr2D 91.183 465 31 3 1589 2053 193993453 193993907 8.560000e-175 623
4 TraesCS3B01G544600 chr5A 95.620 2055 81 7 1 2050 315534969 315537019 0.000000e+00 3288
5 TraesCS3B01G544600 chr7D 89.801 2059 198 9 1 2054 23562574 23564625 0.000000e+00 2628
6 TraesCS3B01G544600 chr7D 89.685 2065 201 9 1 2060 135768585 135770642 0.000000e+00 2623
7 TraesCS3B01G544600 chr7D 89.568 2061 197 12 1 2053 135764470 135762420 0.000000e+00 2599
8 TraesCS3B01G544600 chr7D 89.509 2059 204 9 1 2054 14171519 14169468 0.000000e+00 2595
9 TraesCS3B01G544600 chr5D 89.456 2058 205 9 1 2053 460677483 460679533 0.000000e+00 2588
10 TraesCS3B01G544600 chr5D 93.333 465 23 2 1589 2053 450667817 450667361 0.000000e+00 680
11 TraesCS3B01G544600 chr6D 89.451 2057 204 10 1 2052 402531714 402529666 0.000000e+00 2584
12 TraesCS3B01G544600 chr3D 89.831 767 72 6 2054 2815 585680772 585681537 0.000000e+00 979
13 TraesCS3B01G544600 chr4D 92.258 465 27 3 1589 2053 483639168 483638713 0.000000e+00 651


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G544600 chr3B 782022031 782024845 2814 False 5199 5199 100.000 1 2815 1 chr3B.!!$F1 2814
1 TraesCS3B01G544600 chr2A 755356423 755358478 2055 True 3430 3430 96.793 1 2054 1 chr2A.!!$R1 2053
2 TraesCS3B01G544600 chr2D 355481735 355483785 2050 False 3302 3302 95.720 1 2053 1 chr2D.!!$F2 2052
3 TraesCS3B01G544600 chr5A 315534969 315537019 2050 False 3288 3288 95.620 1 2050 1 chr5A.!!$F1 2049
4 TraesCS3B01G544600 chr7D 23562574 23564625 2051 False 2628 2628 89.801 1 2054 1 chr7D.!!$F1 2053
5 TraesCS3B01G544600 chr7D 135768585 135770642 2057 False 2623 2623 89.685 1 2060 1 chr7D.!!$F2 2059
6 TraesCS3B01G544600 chr7D 135762420 135764470 2050 True 2599 2599 89.568 1 2053 1 chr7D.!!$R2 2052
7 TraesCS3B01G544600 chr7D 14169468 14171519 2051 True 2595 2595 89.509 1 2054 1 chr7D.!!$R1 2053
8 TraesCS3B01G544600 chr5D 460677483 460679533 2050 False 2588 2588 89.456 1 2053 1 chr5D.!!$F1 2052
9 TraesCS3B01G544600 chr6D 402529666 402531714 2048 True 2584 2584 89.451 1 2052 1 chr6D.!!$R1 2051
10 TraesCS3B01G544600 chr3D 585680772 585681537 765 False 979 979 89.831 2054 2815 1 chr3D.!!$F1 761


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 1.237285 TTGCAAGGGAGAAGAAGCGC 61.237 55.000 0.0 0.0 0.0 5.92 F
993 996 2.981805 CTGGCATGATGTTTTGTTCACG 59.018 45.455 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1703 1.619654 TGGCCAAACCATTCAGTCTG 58.380 50.0 0.61 0.0 46.36 3.51 R
2597 2609 0.036732 TGCCTCTGTTTTGGAGCGAT 59.963 50.0 0.00 0.0 0.00 4.58 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.237285 TTGCAAGGGAGAAGAAGCGC 61.237 55.000 0.00 0.00 0.00 5.92
447 450 4.966965 TCTAGAGTTCATGAAGGTCGAC 57.033 45.455 8.80 7.13 0.00 4.20
448 451 4.590918 TCTAGAGTTCATGAAGGTCGACT 58.409 43.478 16.46 1.21 0.00 4.18
453 456 5.007823 AGAGTTCATGAAGGTCGACTATACG 59.992 44.000 16.46 0.43 0.00 3.06
662 665 7.232330 CCTGAATCTTACTCTCAGTGATATGGA 59.768 40.741 0.00 0.00 35.78 3.41
674 677 5.879777 TCAGTGATATGGAAAAATCTTGCGA 59.120 36.000 0.00 0.00 0.00 5.10
833 836 6.531948 AGTCGAATAAAGAGTGTTCATGCTAC 59.468 38.462 0.00 0.00 0.00 3.58
857 860 6.126652 ACCAGATATCAAGCACCTGAGTTAAT 60.127 38.462 5.32 0.00 0.00 1.40
993 996 2.981805 CTGGCATGATGTTTTGTTCACG 59.018 45.455 0.00 0.00 0.00 4.35
1561 1565 7.545965 CGGATCAGTATTTGAGTTTGTTAGAGT 59.454 37.037 0.00 0.00 39.68 3.24
1570 1574 4.451096 TGAGTTTGTTAGAGTTGCGGATTC 59.549 41.667 0.00 0.00 0.00 2.52
1613 1619 4.979197 GCTTATCGTATCCTCTTGACTGTG 59.021 45.833 0.00 0.00 0.00 3.66
1664 1670 9.403583 AGGAGTTTCACAAAATTGAAGTTACTA 57.596 29.630 0.00 0.00 36.84 1.82
1697 1703 2.814336 GAGGTCAACAATGTCCCAAGAC 59.186 50.000 0.00 0.00 43.83 3.01
2017 2026 0.105246 TGGGCCCATTGGTGAAGTTT 60.105 50.000 24.45 0.00 0.00 2.66
2047 2056 0.375106 CTTCGAAATCCTTGAGCCGC 59.625 55.000 0.00 0.00 0.00 6.53
2064 2073 2.922234 CCCCTGCCTTCATCCTCC 59.078 66.667 0.00 0.00 0.00 4.30
2065 2074 2.507944 CCCTGCCTTCATCCTCCG 59.492 66.667 0.00 0.00 0.00 4.63
2068 2077 1.626356 CCTGCCTTCATCCTCCGGAA 61.626 60.000 5.23 0.00 34.34 4.30
2072 2081 2.014068 GCCTTCATCCTCCGGAACAAG 61.014 57.143 5.23 3.20 34.34 3.16
2076 2085 0.321564 CATCCTCCGGAACAAGTGCA 60.322 55.000 5.23 0.00 34.34 4.57
2078 2087 0.534203 TCCTCCGGAACAAGTGCAAC 60.534 55.000 5.23 0.00 0.00 4.17
2094 2103 2.637382 TGCAACTCCTTCCATCTACACA 59.363 45.455 0.00 0.00 0.00 3.72
2100 2109 3.449918 TCCTTCCATCTACACACATGGA 58.550 45.455 0.00 0.00 45.74 3.41
2118 2127 1.586422 GAGTTGCTGCTTGACTGTCA 58.414 50.000 6.36 6.36 0.00 3.58
2151 2160 1.278127 TGGGTGCTACAAGGAAGCTAC 59.722 52.381 0.00 0.00 40.73 3.58
2160 2169 1.625818 CAAGGAAGCTACTGAGGGTGT 59.374 52.381 0.00 0.00 0.00 4.16
2181 2190 1.153765 CAAGGCGAGAGTGCATCGA 60.154 57.895 12.18 0.00 42.76 3.59
2196 2205 0.249489 ATCGAGTTCTATGCGCCCAC 60.249 55.000 4.18 0.00 0.00 4.61
2203 2212 4.769063 TATGCGCCCACCACCACG 62.769 66.667 4.18 0.00 0.00 4.94
2227 2236 2.416747 CATCGTTGCTTCAAGACAGGA 58.583 47.619 0.00 0.00 0.00 3.86
2239 2248 0.617413 AGACAGGAGCATCAACTGGG 59.383 55.000 0.00 0.00 36.25 4.45
2241 2250 1.211457 GACAGGAGCATCAACTGGGAT 59.789 52.381 0.00 0.00 36.25 3.85
2271 2280 4.735132 ATGGTGTGGCGTCGGACG 62.735 66.667 25.18 25.18 45.88 4.79
2279 2288 1.081242 GGCGTCGGACGTCAAAGTA 60.081 57.895 28.18 0.00 46.84 2.24
2292 2301 3.982058 CGTCAAAGTATAGGAATCCGCTC 59.018 47.826 0.00 0.00 0.00 5.03
2300 2309 1.799933 AGGAATCCGCTCCTGAAGAT 58.200 50.000 0.00 0.00 44.56 2.40
2327 2336 2.925578 CATTGTTGCATGACGGTCAT 57.074 45.000 17.62 17.62 37.65 3.06
2328 2337 2.789208 CATTGTTGCATGACGGTCATC 58.211 47.619 20.27 14.95 34.28 2.92
2372 2381 2.128771 TATCCCTCTTTGCTGCAACC 57.871 50.000 15.72 0.00 0.00 3.77
2373 2382 0.407139 ATCCCTCTTTGCTGCAACCT 59.593 50.000 15.72 0.00 0.00 3.50
2374 2383 1.064003 TCCCTCTTTGCTGCAACCTA 58.936 50.000 15.72 0.00 0.00 3.08
2384 2394 7.282585 TCTTTGCTGCAACCTATATAGATTGT 58.717 34.615 15.72 2.07 0.00 2.71
2398 2408 2.893637 AGATTGTCATAGACGTGTGGC 58.106 47.619 0.00 0.00 34.95 5.01
2402 2412 0.801067 GTCATAGACGTGTGGCGGAC 60.801 60.000 0.00 0.00 46.52 4.79
2404 2414 3.060020 ATAGACGTGTGGCGGACGG 62.060 63.158 12.03 0.00 46.52 4.79
2408 2418 4.735132 CGTGTGGCGGACGGTGAT 62.735 66.667 0.48 0.00 36.85 3.06
2409 2419 3.118454 GTGTGGCGGACGGTGATG 61.118 66.667 0.00 0.00 0.00 3.07
2410 2420 4.386951 TGTGGCGGACGGTGATGG 62.387 66.667 0.00 0.00 0.00 3.51
2420 2430 3.443045 GGTGATGGTGCAAGGCCG 61.443 66.667 0.00 0.00 0.00 6.13
2450 2460 2.542907 CCCGTTGTTGCAAGCGACT 61.543 57.895 16.38 0.00 0.00 4.18
2458 2468 2.434884 GCAAGCGACTGCAGGCTA 60.435 61.111 19.55 0.00 46.23 3.93
2521 2531 1.804396 CGGCCTTCCACAATGTTGCA 61.804 55.000 0.00 0.00 0.00 4.08
2523 2533 0.664166 GCCTTCCACAATGTTGCACG 60.664 55.000 0.00 0.00 0.00 5.34
2558 2570 0.844661 TGGGGGCTGTAACATGAGGT 60.845 55.000 0.00 0.00 0.00 3.85
2584 2596 1.303236 GTGCTGTATGTGCCCACCA 60.303 57.895 0.00 0.00 0.00 4.17
2587 2599 1.745115 CTGTATGTGCCCACCACCG 60.745 63.158 0.00 0.00 44.01 4.94
2589 2601 3.641454 TATGTGCCCACCACCGCA 61.641 61.111 0.00 0.00 44.01 5.69
2597 2609 1.377072 CCACCACCGCATGTCATCA 60.377 57.895 0.00 0.00 0.00 3.07
2612 2624 3.002791 GTCATCATCGCTCCAAAACAGA 58.997 45.455 0.00 0.00 0.00 3.41
2661 2673 2.029964 GTGCCGTCGGACCTCAAA 59.970 61.111 17.49 0.00 0.00 2.69
2665 2677 0.175073 GCCGTCGGACCTCAAAGTAT 59.825 55.000 17.49 0.00 0.00 2.12
2667 2679 1.203994 CCGTCGGACCTCAAAGTATGT 59.796 52.381 4.91 0.00 0.00 2.29
2674 2686 3.871594 GGACCTCAAAGTATGTGAATCCG 59.128 47.826 0.00 0.00 27.24 4.18
2677 2689 3.310774 CCTCAAAGTATGTGAATCCGCTG 59.689 47.826 0.00 0.00 27.24 5.18
2678 2690 3.270027 TCAAAGTATGTGAATCCGCTGG 58.730 45.455 0.00 0.00 0.00 4.85
2682 2694 0.251634 TATGTGAATCCGCTGGCACA 59.748 50.000 0.00 0.00 44.31 4.57
2700 2713 0.888619 CAGACGAGGAGGTGTTGCTA 59.111 55.000 0.00 0.00 0.00 3.49
2706 2719 1.740025 GAGGAGGTGTTGCTACATTGC 59.260 52.381 3.85 2.01 36.50 3.56
2709 2722 1.470098 GAGGTGTTGCTACATTGCAGG 59.530 52.381 3.85 0.00 44.27 4.85
2711 2724 0.454957 GTGTTGCTACATTGCAGGCG 60.455 55.000 3.85 0.00 44.27 5.52
2718 2731 1.129251 CTACATTGCAGGCGTTGAGTG 59.871 52.381 0.00 0.00 0.00 3.51
2730 2743 1.528586 CGTTGAGTGCTTCAAGTCCAG 59.471 52.381 4.74 0.00 46.09 3.86
2731 2744 2.565841 GTTGAGTGCTTCAAGTCCAGT 58.434 47.619 4.74 0.00 46.09 4.00
2733 2746 1.762370 TGAGTGCTTCAAGTCCAGTCA 59.238 47.619 0.00 0.00 36.78 3.41
2734 2747 2.139118 GAGTGCTTCAAGTCCAGTCAC 58.861 52.381 0.00 0.00 0.00 3.67
2735 2748 1.486310 AGTGCTTCAAGTCCAGTCACA 59.514 47.619 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
447 450 2.295885 AGTCCAAGTCCCGACGTATAG 58.704 52.381 0.00 0.00 36.20 1.31
448 451 2.425143 AGTCCAAGTCCCGACGTATA 57.575 50.000 0.00 0.00 36.20 1.47
453 456 5.293569 CACATTATAAAGTCCAAGTCCCGAC 59.706 44.000 0.00 0.00 0.00 4.79
483 486 8.628630 TCAAACCAACATATTCAAGTGTATCA 57.371 30.769 0.00 0.00 0.00 2.15
497 500 6.819284 ACATCTTGAACATTCAAACCAACAT 58.181 32.000 8.33 0.00 45.61 2.71
591 594 4.338879 ACAATGCTCTTGGATTAGTTGCT 58.661 39.130 4.90 0.00 32.89 3.91
833 836 3.834489 ACTCAGGTGCTTGATATCTGG 57.166 47.619 3.98 0.00 0.00 3.86
993 996 6.806739 GCAATTTCTTACTCACCATGTTTACC 59.193 38.462 0.00 0.00 0.00 2.85
1427 1430 5.516339 CCATGAGTGAAAGTGTTGACAAAAC 59.484 40.000 0.00 0.00 0.00 2.43
1570 1574 9.674824 GATAAGCAATTGAGACATTTGGATAAG 57.325 33.333 10.34 0.00 0.00 1.73
1613 1619 1.915614 CTGATGCAACAGTGACCGGC 61.916 60.000 15.39 0.00 33.73 6.13
1697 1703 1.619654 TGGCCAAACCATTCAGTCTG 58.380 50.000 0.61 0.00 46.36 3.51
1756 1762 6.237463 CGCAAAATCATCAATGACAATGTCAG 60.237 38.462 21.23 9.09 46.04 3.51
2047 2056 2.922234 GGAGGATGAAGGCAGGGG 59.078 66.667 0.00 0.00 0.00 4.79
2064 2073 1.264288 GAAGGAGTTGCACTTGTTCCG 59.736 52.381 0.00 0.00 33.16 4.30
2065 2074 1.609072 GGAAGGAGTTGCACTTGTTCC 59.391 52.381 0.00 0.88 34.97 3.62
2068 2077 2.107204 AGATGGAAGGAGTTGCACTTGT 59.893 45.455 0.00 0.00 36.75 3.16
2072 2081 3.003480 GTGTAGATGGAAGGAGTTGCAC 58.997 50.000 0.00 0.00 36.75 4.57
2076 2085 4.836825 CATGTGTGTAGATGGAAGGAGTT 58.163 43.478 0.00 0.00 0.00 3.01
2094 2103 1.202855 AGTCAAGCAGCAACTCCATGT 60.203 47.619 0.00 0.00 0.00 3.21
2100 2109 1.878088 CATGACAGTCAAGCAGCAACT 59.122 47.619 7.50 0.00 0.00 3.16
2118 2127 3.889859 AGCACCCAACATATCATCCAT 57.110 42.857 0.00 0.00 0.00 3.41
2151 2160 2.620112 CGCCTTGCAACACCCTCAG 61.620 63.158 0.00 0.00 0.00 3.35
2160 2169 2.110835 TGCACTCTCGCCTTGCAA 59.889 55.556 0.00 0.00 43.16 4.08
2181 2190 1.078426 GTGGTGGGCGCATAGAACT 60.078 57.895 10.83 0.00 0.00 3.01
2196 2205 2.668212 AACGATGGCACGTGGTGG 60.668 61.111 18.88 0.00 45.83 4.61
2203 2212 0.874390 TCTTGAAGCAACGATGGCAC 59.126 50.000 0.00 0.00 0.00 5.01
2239 2248 0.604578 ACCATTGCAACACTGGCATC 59.395 50.000 15.92 0.00 41.58 3.91
2241 2250 1.042003 ACACCATTGCAACACTGGCA 61.042 50.000 15.92 0.00 37.65 4.92
2246 2255 1.661197 CGCCACACCATTGCAACAC 60.661 57.895 0.00 0.00 0.00 3.32
2271 2280 4.039366 AGGAGCGGATTCCTATACTTTGAC 59.961 45.833 0.30 0.00 45.76 3.18
2279 2288 2.964209 TCTTCAGGAGCGGATTCCTAT 58.036 47.619 0.30 0.00 45.86 2.57
2292 2301 1.938577 CAATGCCGACTCATCTTCAGG 59.061 52.381 0.00 0.00 0.00 3.86
2320 2329 0.317160 TTGAAGCACTCGATGACCGT 59.683 50.000 0.00 0.00 39.75 4.83
2322 2331 1.996191 GACTTGAAGCACTCGATGACC 59.004 52.381 0.00 0.00 0.00 4.02
2325 2334 2.857152 GCTAGACTTGAAGCACTCGATG 59.143 50.000 0.00 0.00 38.63 3.84
2327 2336 1.202582 GGCTAGACTTGAAGCACTCGA 59.797 52.381 0.00 0.00 40.61 4.04
2328 2337 1.067565 TGGCTAGACTTGAAGCACTCG 60.068 52.381 0.00 0.00 40.61 4.18
2372 2381 7.698550 GCCACACGTCTATGACAATCTATATAG 59.301 40.741 3.10 3.10 32.09 1.31
2373 2382 7.535997 GCCACACGTCTATGACAATCTATATA 58.464 38.462 0.00 0.00 32.09 0.86
2374 2383 6.390721 GCCACACGTCTATGACAATCTATAT 58.609 40.000 0.00 0.00 32.09 0.86
2384 2394 1.509463 GTCCGCCACACGTCTATGA 59.491 57.895 0.00 0.00 41.42 2.15
2398 2408 2.358125 TTGCACCATCACCGTCCG 60.358 61.111 0.00 0.00 0.00 4.79
2399 2409 2.040544 CCTTGCACCATCACCGTCC 61.041 63.158 0.00 0.00 0.00 4.79
2402 2412 3.443045 GGCCTTGCACCATCACCG 61.443 66.667 0.00 0.00 0.00 4.94
2404 2414 2.359850 TCGGCCTTGCACCATCAC 60.360 61.111 0.00 0.00 0.00 3.06
2405 2415 2.359850 GTCGGCCTTGCACCATCA 60.360 61.111 0.00 0.00 0.00 3.07
2406 2416 3.134127 GGTCGGCCTTGCACCATC 61.134 66.667 0.00 0.00 0.00 3.51
2420 2430 4.778143 AACGGGGATGCTGCGGTC 62.778 66.667 0.00 0.00 0.00 4.79
2450 2460 2.688666 CCCTCCCAGTAGCCTGCA 60.689 66.667 0.00 0.00 37.38 4.41
2501 2511 1.080569 CAACATTGTGGAAGGCCGC 60.081 57.895 0.00 0.00 45.13 6.53
2511 2521 1.875963 GCTAGCCGTGCAACATTGT 59.124 52.632 2.29 0.00 35.74 2.71
2513 2523 2.398554 CCGCTAGCCGTGCAACATT 61.399 57.895 9.66 0.00 35.74 2.71
2541 2551 0.618458 TCACCTCATGTTACAGCCCC 59.382 55.000 0.00 0.00 0.00 5.80
2548 2560 3.081061 GCACCAATGTCACCTCATGTTA 58.919 45.455 0.00 0.00 0.00 2.41
2558 2570 1.811965 GCACATACAGCACCAATGTCA 59.188 47.619 0.00 0.00 31.60 3.58
2584 2596 0.877649 GAGCGATGATGACATGCGGT 60.878 55.000 0.00 0.00 38.90 5.68
2587 2599 1.302366 TTGGAGCGATGATGACATGC 58.698 50.000 0.00 0.00 36.82 4.06
2589 2601 3.346315 TGTTTTGGAGCGATGATGACAT 58.654 40.909 0.00 0.00 39.67 3.06
2597 2609 0.036732 TGCCTCTGTTTTGGAGCGAT 59.963 50.000 0.00 0.00 0.00 4.58
2661 2673 0.541392 TGCCAGCGGATTCACATACT 59.459 50.000 0.00 0.00 0.00 2.12
2665 2677 1.672030 CTGTGCCAGCGGATTCACA 60.672 57.895 0.00 3.21 37.78 3.58
2667 2679 1.375908 GTCTGTGCCAGCGGATTCA 60.376 57.895 0.00 0.00 0.00 2.57
2674 2686 2.125753 CTCCTCGTCTGTGCCAGC 60.126 66.667 0.00 0.00 0.00 4.85
2677 2689 2.100879 AACACCTCCTCGTCTGTGCC 62.101 60.000 0.00 0.00 31.98 5.01
2678 2690 0.946221 CAACACCTCCTCGTCTGTGC 60.946 60.000 0.00 0.00 31.98 4.57
2682 2694 0.889306 GTAGCAACACCTCCTCGTCT 59.111 55.000 0.00 0.00 0.00 4.18
2689 2701 1.470098 CCTGCAATGTAGCAACACCTC 59.530 52.381 0.00 0.00 45.13 3.85
2690 2702 1.538047 CCTGCAATGTAGCAACACCT 58.462 50.000 0.00 0.00 45.13 4.00
2700 2713 1.951510 CACTCAACGCCTGCAATGT 59.048 52.632 0.00 0.00 0.00 2.71
2706 2719 0.236711 CTTGAAGCACTCAACGCCTG 59.763 55.000 0.00 0.00 39.20 4.85
2709 2722 0.235926 GGACTTGAAGCACTCAACGC 59.764 55.000 0.00 0.00 39.20 4.84
2711 2724 2.545946 GACTGGACTTGAAGCACTCAAC 59.454 50.000 0.00 0.00 39.20 3.18
2718 2731 2.565841 AGTTGTGACTGGACTTGAAGC 58.434 47.619 0.00 0.00 33.99 3.86
2730 2743 3.248602 CAGCAAAGAGGTGTAGTTGTGAC 59.751 47.826 0.00 0.00 40.80 3.67
2731 2744 3.466836 CAGCAAAGAGGTGTAGTTGTGA 58.533 45.455 0.00 0.00 40.80 3.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.