Multiple sequence alignment - TraesCS3B01G542100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G542100 chr3B 100.000 3856 0 0 1 3856 780091850 780087995 0.000000e+00 7121
1 TraesCS3B01G542100 chr3B 92.157 3570 246 24 1 3555 779715925 779712375 0.000000e+00 5011
2 TraesCS3B01G542100 chr3B 92.268 3466 225 27 1 3443 780062830 780059385 0.000000e+00 4876
3 TraesCS3B01G542100 chr3B 91.803 1891 133 17 1 1882 779932781 779930904 0.000000e+00 2614
4 TraesCS3B01G542100 chr3B 90.264 1931 158 19 1222 3140 779694692 779692780 0.000000e+00 2497
5 TraesCS3B01G542100 chr3B 91.394 1801 137 12 1763 3555 779989621 779987831 0.000000e+00 2451
6 TraesCS3B01G542100 chr3B 91.570 1732 131 11 1 1728 779991329 779989609 0.000000e+00 2375
7 TraesCS3B01G542100 chr3B 87.130 1756 175 24 1383 3127 779646471 779644756 0.000000e+00 1943
8 TraesCS3B01G542100 chr3B 91.650 1006 62 13 2444 3449 779974997 779974014 0.000000e+00 1373
9 TraesCS3B01G542100 chr3B 94.432 862 40 6 1 857 780235700 780234842 0.000000e+00 1319
10 TraesCS3B01G542100 chr3B 91.745 848 57 7 2714 3555 779813273 779812433 0.000000e+00 1166
11 TraesCS3B01G542100 chr3B 90.449 691 57 7 1166 1854 779819987 779819304 0.000000e+00 902
12 TraesCS3B01G542100 chr3B 92.825 223 14 2 1006 1227 779695104 779694883 4.810000e-84 322
13 TraesCS3B01G542100 chr3B 84.615 325 37 9 1293 1615 779963470 779963157 1.040000e-80 311
14 TraesCS3B01G542100 chr3B 83.686 331 41 8 1284 1612 780133310 780132991 2.250000e-77 300
15 TraesCS3B01G542100 chr3B 92.056 214 13 2 3560 3769 19756025 19755812 8.100000e-77 298
16 TraesCS3B01G542100 chr3B 92.056 214 13 2 3560 3769 19784177 19783964 8.100000e-77 298
17 TraesCS3B01G542100 chr3B 97.531 81 1 1 3776 3856 779930897 779930818 1.870000e-28 137
18 TraesCS3B01G542100 chr3B 97.531 81 1 1 3776 3856 779987578 779987499 1.870000e-28 137
19 TraesCS3B01G542100 chr3B 97.500 80 1 1 3777 3856 779973615 779973537 6.720000e-28 135
20 TraesCS3B01G542100 chr3B 96.296 81 3 0 3776 3856 780058891 780058811 2.420000e-27 134
21 TraesCS3B01G542100 chr3D 88.830 1880 174 24 1579 3437 583001617 582999753 0.000000e+00 2276
22 TraesCS3B01G542100 chr3D 85.425 1578 169 35 1585 3147 582899802 582898271 0.000000e+00 1583
23 TraesCS3B01G542100 chr3D 90.183 1202 97 11 1585 2780 582909838 582908652 0.000000e+00 1546
24 TraesCS3B01G542100 chr3D 90.017 1202 99 11 1585 2780 582920985 582919799 0.000000e+00 1535
25 TraesCS3B01G542100 chr3D 90.385 1092 89 7 1585 2671 582922260 582921180 0.000000e+00 1421
26 TraesCS3B01G542100 chr3D 89.441 161 13 4 350 508 582910681 582910523 2.350000e-47 200
27 TraesCS3B01G542100 chr3D 89.441 161 13 4 350 508 582923109 582922951 2.350000e-47 200
28 TraesCS3B01G542100 chr3D 87.234 94 8 4 3468 3561 517889271 517889360 1.890000e-18 104
29 TraesCS3B01G542100 chrUn 91.627 848 58 7 2714 3555 341036615 341037455 0.000000e+00 1160
30 TraesCS3B01G542100 chrUn 91.422 851 53 11 2714 3555 41606289 41605450 0.000000e+00 1149
31 TraesCS3B01G542100 chrUn 89.961 767 57 13 1 753 41612565 41611805 0.000000e+00 972
32 TraesCS3B01G542100 chrUn 90.449 691 57 7 1166 1854 41611478 41610795 0.000000e+00 902
33 TraesCS3B01G542100 chrUn 93.764 449 21 4 3006 3454 41609866 41609425 0.000000e+00 667
34 TraesCS3B01G542100 chrUn 93.365 211 10 2 3562 3768 265625093 265624883 3.740000e-80 309
35 TraesCS3B01G542100 chrUn 93.365 211 10 2 3562 3768 273279073 273278863 3.740000e-80 309
36 TraesCS3B01G542100 chrUn 93.365 211 10 2 3562 3768 435369224 435369434 3.740000e-80 309
37 TraesCS3B01G542100 chrUn 92.056 214 13 2 3560 3769 304894080 304894293 8.100000e-77 298
38 TraesCS3B01G542100 chrUn 86.667 255 27 5 3184 3437 370988999 370988751 3.790000e-70 276
39 TraesCS3B01G542100 chrUn 81.818 275 33 13 1286 1552 41703787 41704052 8.390000e-52 215
40 TraesCS3B01G542100 chrUn 86.957 92 9 3 3464 3555 135321462 135321374 2.450000e-17 100
41 TraesCS3B01G542100 chrUn 86.957 92 9 3 3464 3555 135354616 135354528 2.450000e-17 100
42 TraesCS3B01G542100 chr2A 80.851 470 63 21 49 513 751024085 751023638 1.030000e-90 344
43 TraesCS3B01G542100 chr2A 92.056 214 13 2 3560 3769 669840253 669840040 8.100000e-77 298
44 TraesCS3B01G542100 chr2D 79.563 504 72 20 1 478 488062208 488062706 7.990000e-87 331
45 TraesCS3B01G542100 chr3A 88.015 267 20 8 546 805 730650011 730649750 4.840000e-79 305
46 TraesCS3B01G542100 chr5D 92.488 213 11 3 3560 3768 345037908 345038119 2.250000e-77 300
47 TraesCS3B01G542100 chr5D 86.282 277 24 9 546 815 446271909 446271640 4.870000e-74 289
48 TraesCS3B01G542100 chr1B 92.488 213 11 3 3561 3769 623958268 623958479 2.250000e-77 300
49 TraesCS3B01G542100 chr4D 87.313 268 21 6 546 806 451164461 451164200 1.050000e-75 294
50 TraesCS3B01G542100 chr7D 86.891 267 23 8 546 805 134485772 134486033 4.870000e-74 289
51 TraesCS3B01G542100 chr5A 80.729 384 60 13 101 477 676584579 676584955 1.750000e-73 287
52 TraesCS3B01G542100 chr5A 85.047 107 12 4 3469 3574 548500540 548500643 5.270000e-19 106
53 TraesCS3B01G542100 chr1A 90.805 87 7 1 3469 3555 480576505 480576590 8.750000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G542100 chr3B 780087995 780091850 3855 True 7121.000000 7121 100.000000 1 3856 1 chr3B.!!$R8 3855
1 TraesCS3B01G542100 chr3B 779712375 779715925 3550 True 5011.000000 5011 92.157000 1 3555 1 chr3B.!!$R4 3554
2 TraesCS3B01G542100 chr3B 780058811 780062830 4019 True 2505.000000 4876 94.282000 1 3856 2 chr3B.!!$R15 3855
3 TraesCS3B01G542100 chr3B 779644756 779646471 1715 True 1943.000000 1943 87.130000 1383 3127 1 chr3B.!!$R3 1744
4 TraesCS3B01G542100 chr3B 779987499 779991329 3830 True 1654.333333 2451 93.498333 1 3856 3 chr3B.!!$R14 3855
5 TraesCS3B01G542100 chr3B 779692780 779695104 2324 True 1409.500000 2497 91.544500 1006 3140 2 chr3B.!!$R11 2134
6 TraesCS3B01G542100 chr3B 779930818 779932781 1963 True 1375.500000 2614 94.667000 1 3856 2 chr3B.!!$R12 3855
7 TraesCS3B01G542100 chr3B 780234842 780235700 858 True 1319.000000 1319 94.432000 1 857 1 chr3B.!!$R10 856
8 TraesCS3B01G542100 chr3B 779812433 779813273 840 True 1166.000000 1166 91.745000 2714 3555 1 chr3B.!!$R5 841
9 TraesCS3B01G542100 chr3B 779819304 779819987 683 True 902.000000 902 90.449000 1166 1854 1 chr3B.!!$R6 688
10 TraesCS3B01G542100 chr3B 779973537 779974997 1460 True 754.000000 1373 94.575000 2444 3856 2 chr3B.!!$R13 1412
11 TraesCS3B01G542100 chr3D 582999753 583001617 1864 True 2276.000000 2276 88.830000 1579 3437 1 chr3D.!!$R2 1858
12 TraesCS3B01G542100 chr3D 582898271 582899802 1531 True 1583.000000 1583 85.425000 1585 3147 1 chr3D.!!$R1 1562
13 TraesCS3B01G542100 chr3D 582919799 582923109 3310 True 1052.000000 1535 89.947667 350 2780 3 chr3D.!!$R4 2430
14 TraesCS3B01G542100 chr3D 582908652 582910681 2029 True 873.000000 1546 89.812000 350 2780 2 chr3D.!!$R3 2430
15 TraesCS3B01G542100 chrUn 341036615 341037455 840 False 1160.000000 1160 91.627000 2714 3555 1 chrUn.!!$F3 841
16 TraesCS3B01G542100 chrUn 41605450 41612565 7115 True 922.500000 1149 91.399000 1 3555 4 chrUn.!!$R6 3554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 769 0.673985 TATCATTCCGCACTCCTCCG 59.326 55.0 0.0 0.0 0.0 4.63 F
1253 1706 0.034756 ACATGACGCTTGCACCACTA 59.965 50.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 3802 0.467384 CAATCAGCCCAGTCTCGGAT 59.533 55.000 0.0 0.0 0.00 4.18 R
2940 8773 1.001158 GAGGTACACCGAGCTAGATGC 60.001 57.143 0.0 0.0 42.08 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 6.963049 ATAGAAAGAATGTTGACCGTGTAC 57.037 37.500 0.00 0.00 0.00 2.90
86 91 6.535274 AAGAATGTTGACCGTGTACTAAAC 57.465 37.500 0.00 0.00 0.00 2.01
549 769 0.673985 TATCATTCCGCACTCCTCCG 59.326 55.000 0.00 0.00 0.00 4.63
552 772 3.064987 ATTCCGCACTCCTCCGTCG 62.065 63.158 0.00 0.00 0.00 5.12
601 833 4.993705 TGTTGGAGGGTCAAACTATCTT 57.006 40.909 0.00 0.00 0.00 2.40
721 973 9.153721 ACTAATTTGATGGCATAAATGTTTGTG 57.846 29.630 0.00 0.00 33.13 3.33
799 1055 3.553828 ACACTTTTTCAAGGACGGAGA 57.446 42.857 0.00 0.00 33.82 3.71
1017 1273 2.060980 CAGACGGGCTTAGCTCCCT 61.061 63.158 3.59 0.00 41.69 4.20
1070 1327 1.972588 AATGGACTAGGAGGGCAAGT 58.027 50.000 0.00 0.00 0.00 3.16
1075 1332 3.263425 TGGACTAGGAGGGCAAGTAAAAG 59.737 47.826 0.00 0.00 0.00 2.27
1079 1336 4.597940 ACTAGGAGGGCAAGTAAAAGAAGT 59.402 41.667 0.00 0.00 0.00 3.01
1220 1673 2.240667 AGCTCACAATCTAATGGTGGCT 59.759 45.455 0.00 0.00 35.61 4.75
1230 1683 2.351924 AATGGTGGCTCGGTGGTGTT 62.352 55.000 0.00 0.00 0.00 3.32
1231 1684 2.978010 GGTGGCTCGGTGGTGTTG 60.978 66.667 0.00 0.00 0.00 3.33
1236 1689 1.522806 GCTCGGTGGTGTTGTGACA 60.523 57.895 0.00 0.00 0.00 3.58
1251 1704 1.207593 GACATGACGCTTGCACCAC 59.792 57.895 0.00 0.00 0.00 4.16
1253 1706 0.034756 ACATGACGCTTGCACCACTA 59.965 50.000 0.00 0.00 0.00 2.74
1264 1720 1.638070 TGCACCACTAATGATGGGGAA 59.362 47.619 0.00 0.00 44.08 3.97
1265 1721 2.301346 GCACCACTAATGATGGGGAAG 58.699 52.381 0.00 0.00 44.08 3.46
1266 1722 2.301346 CACCACTAATGATGGGGAAGC 58.699 52.381 0.00 0.00 44.08 3.86
1270 1726 1.849039 ACTAATGATGGGGAAGCAGCT 59.151 47.619 0.00 0.00 0.00 4.24
1379 2000 9.561069 AAGAAAAGTATAACATGTGAACTCTGT 57.439 29.630 0.00 0.00 0.00 3.41
1443 2064 8.902806 TGCAAATTTAGAAGGATATACAAGTGG 58.097 33.333 0.00 0.00 0.00 4.00
1450 2074 1.474320 GGATATACAAGTGGTGCGCCA 60.474 52.381 16.89 16.89 43.73 5.69
1487 2111 8.974408 TGTTAAGCAATGACATATGTATACGTC 58.026 33.333 8.71 1.42 0.00 4.34
1544 2170 4.935808 AGGATGTAAAACCAGCTAACGAAG 59.064 41.667 0.00 0.00 0.00 3.79
1612 2239 2.046700 TTGTTTCCCGCTAGCCCG 60.047 61.111 9.66 0.00 0.00 6.13
1630 2257 2.352323 CCCGTTTTTGGCACCTCATTAC 60.352 50.000 0.00 0.00 0.00 1.89
1704 2340 4.410883 ACCTACAAATATCGGTCCATTCCA 59.589 41.667 0.00 0.00 0.00 3.53
1739 2375 1.410365 CCCTTCCTCGCTCCTCTCTTA 60.410 57.143 0.00 0.00 0.00 2.10
1760 2396 4.529109 ACTAGTTTCTCTTCTCAGGCAC 57.471 45.455 0.00 0.00 0.00 5.01
1770 2406 0.904649 TCTCAGGCACGTCATCCATT 59.095 50.000 0.00 0.00 0.00 3.16
1820 2456 2.029110 GCAGCCAAATAACCAGAGCAAA 60.029 45.455 0.00 0.00 0.00 3.68
1938 3470 2.511373 CAGAATGCGGTGGCGCTA 60.511 61.111 7.64 0.00 44.10 4.26
2093 3660 1.346062 CCCATCCCGATCATCTCTGT 58.654 55.000 0.00 0.00 0.00 3.41
2130 3697 1.303806 TGTCCACATCGAGTCGGGA 60.304 57.895 13.54 8.45 0.00 5.14
2155 3722 1.127567 CACCTTCCACCAGGACCTCA 61.128 60.000 0.00 0.00 45.73 3.86
2157 3724 0.995024 CCTTCCACCAGGACCTCATT 59.005 55.000 0.00 0.00 45.73 2.57
2182 3749 3.319198 GGGTCGCCCACTTCCTCA 61.319 66.667 9.72 0.00 44.65 3.86
2296 3866 1.785353 GCCCTACACCTCCCAACCAA 61.785 60.000 0.00 0.00 0.00 3.67
2382 5227 4.246458 GCGAGGACATCTTTGAGTACTTT 58.754 43.478 0.00 0.00 0.00 2.66
2494 6988 3.501062 CCATGATGATTGGAACTGGATCG 59.499 47.826 0.00 0.00 36.26 3.69
2700 8088 2.967397 CTCCGCAAGTACGTCCCA 59.033 61.111 0.00 0.00 0.00 4.37
2703 8091 2.388232 CCGCAAGTACGTCCCAAGC 61.388 63.158 0.00 0.00 0.00 4.01
2766 8593 1.783711 CGTCATCTCGTCTATGCTTGC 59.216 52.381 0.00 0.00 0.00 4.01
2942 8775 6.741992 AGTAAAAATTCGATGACATCAGCA 57.258 33.333 15.58 0.00 31.58 4.41
2969 8802 2.585247 GTGTACCTCGCATCCGCC 60.585 66.667 0.00 0.00 33.11 6.13
3062 8902 4.250464 CACAACTGGTACATAACGGTCAT 58.750 43.478 0.00 0.00 38.20 3.06
3135 8979 1.065491 TGAGCACCTACATTCGCCATT 60.065 47.619 0.00 0.00 0.00 3.16
3149 9001 2.282816 CATTCCCCAACCGTGCCA 60.283 61.111 0.00 0.00 0.00 4.92
3225 9083 1.490490 TGATACCTCATTGGGAGCCAC 59.510 52.381 0.00 0.00 42.62 5.01
3226 9084 1.490490 GATACCTCATTGGGAGCCACA 59.510 52.381 0.00 0.00 42.62 4.17
3227 9085 1.595311 TACCTCATTGGGAGCCACAT 58.405 50.000 0.00 0.00 42.62 3.21
3228 9086 0.033796 ACCTCATTGGGAGCCACATG 60.034 55.000 0.00 0.00 42.62 3.21
3325 9187 7.765695 AACCACTGACATTGTTTGAATATCT 57.234 32.000 0.00 0.00 0.00 1.98
3329 9191 9.480053 CCACTGACATTGTTTGAATATCTTTTT 57.520 29.630 0.00 0.00 0.00 1.94
3382 9244 6.314917 AGTTCTAGGTTTTGATTCCATGGTT 58.685 36.000 12.58 0.00 0.00 3.67
3483 9361 4.437255 GCAGGGTGTTGCTTTTTCTTTTTG 60.437 41.667 0.00 0.00 40.89 2.44
3488 9366 5.220835 GGTGTTGCTTTTTCTTTTTGGATGG 60.221 40.000 0.00 0.00 0.00 3.51
3493 9371 4.576053 GCTTTTTCTTTTTGGATGGCAACT 59.424 37.500 0.00 0.00 37.61 3.16
3536 9414 0.036952 CAGAGTCCTTCGTGCCACAT 60.037 55.000 0.00 0.00 0.00 3.21
3558 9436 7.044181 ACATGTGTGACACTTATCTATTCAGG 58.956 38.462 17.47 0.00 35.11 3.86
3559 9437 5.977635 TGTGTGACACTTATCTATTCAGGG 58.022 41.667 17.47 0.00 35.11 4.45
3561 9439 6.043411 GTGTGACACTTATCTATTCAGGGTC 58.957 44.000 8.76 0.00 40.79 4.46
3562 9440 5.719563 TGTGACACTTATCTATTCAGGGTCA 59.280 40.000 7.20 0.00 46.49 4.02
3563 9441 6.867519 TGACACTTATCTATTCAGGGTCAA 57.132 37.500 0.96 0.00 45.85 3.18
3565 9443 7.275183 TGACACTTATCTATTCAGGGTCAATG 58.725 38.462 0.96 0.00 45.85 2.82
3567 9445 7.050377 ACACTTATCTATTCAGGGTCAATGTG 58.950 38.462 0.00 0.00 0.00 3.21
3569 9447 4.785346 ATCTATTCAGGGTCAATGTGCT 57.215 40.909 0.00 0.00 0.00 4.40
3571 9449 5.692115 TCTATTCAGGGTCAATGTGCTAA 57.308 39.130 0.00 0.00 0.00 3.09
3572 9450 6.252599 TCTATTCAGGGTCAATGTGCTAAT 57.747 37.500 0.00 0.00 0.00 1.73
3573 9451 6.057533 TCTATTCAGGGTCAATGTGCTAATG 58.942 40.000 0.00 0.00 0.00 1.90
3574 9452 3.003394 TCAGGGTCAATGTGCTAATGG 57.997 47.619 0.00 0.00 0.00 3.16
3576 9454 0.746659 GGGTCAATGTGCTAATGGGC 59.253 55.000 0.00 0.00 0.00 5.36
3577 9455 0.746659 GGTCAATGTGCTAATGGGCC 59.253 55.000 0.00 0.00 0.00 5.80
3578 9456 1.473258 GTCAATGTGCTAATGGGCCA 58.527 50.000 9.61 9.61 0.00 5.36
3580 9458 2.233431 GTCAATGTGCTAATGGGCCAAA 59.767 45.455 11.89 0.00 0.00 3.28
3581 9459 2.902486 TCAATGTGCTAATGGGCCAAAA 59.098 40.909 11.89 0.00 0.00 2.44
3582 9460 3.002102 CAATGTGCTAATGGGCCAAAAC 58.998 45.455 11.89 5.38 0.00 2.43
3583 9461 2.008242 TGTGCTAATGGGCCAAAACT 57.992 45.000 11.89 0.00 0.00 2.66
3584 9462 1.617850 TGTGCTAATGGGCCAAAACTG 59.382 47.619 11.89 0.24 0.00 3.16
3585 9463 1.892474 GTGCTAATGGGCCAAAACTGA 59.108 47.619 11.89 0.00 0.00 3.41
3586 9464 2.298729 GTGCTAATGGGCCAAAACTGAA 59.701 45.455 11.89 0.00 0.00 3.02
3589 9467 0.686789 AATGGGCCAAAACTGAAGCC 59.313 50.000 11.89 0.00 44.99 4.35
3591 9469 3.869481 GGCCAAAACTGAAGCCCA 58.131 55.556 0.00 0.00 39.60 5.36
3592 9470 2.132300 GGCCAAAACTGAAGCCCAA 58.868 52.632 0.00 0.00 39.60 4.12
3593 9471 0.249868 GGCCAAAACTGAAGCCCAAC 60.250 55.000 0.00 0.00 39.60 3.77
3594 9472 0.752658 GCCAAAACTGAAGCCCAACT 59.247 50.000 0.00 0.00 0.00 3.16
3595 9473 1.138859 GCCAAAACTGAAGCCCAACTT 59.861 47.619 0.00 0.00 42.98 2.66
3597 9475 2.168313 CCAAAACTGAAGCCCAACTTGT 59.832 45.455 0.00 0.00 39.29 3.16
3598 9476 3.189285 CAAAACTGAAGCCCAACTTGTG 58.811 45.455 0.00 0.00 39.29 3.33
3599 9477 2.143876 AACTGAAGCCCAACTTGTGT 57.856 45.000 0.00 0.00 39.29 3.72
3601 9479 3.290948 ACTGAAGCCCAACTTGTGTTA 57.709 42.857 0.00 0.00 39.29 2.41
3603 9481 3.569701 ACTGAAGCCCAACTTGTGTTATG 59.430 43.478 0.00 0.00 39.29 1.90
3604 9482 3.561143 TGAAGCCCAACTTGTGTTATGT 58.439 40.909 0.00 0.00 39.29 2.29
3605 9483 4.720046 TGAAGCCCAACTTGTGTTATGTA 58.280 39.130 0.00 0.00 39.29 2.29
3606 9484 4.517453 TGAAGCCCAACTTGTGTTATGTAC 59.483 41.667 0.00 0.00 39.29 2.90
3607 9485 4.367039 AGCCCAACTTGTGTTATGTACT 57.633 40.909 0.00 0.00 34.60 2.73
3609 9487 6.062258 AGCCCAACTTGTGTTATGTACTAT 57.938 37.500 0.00 0.00 34.60 2.12
3610 9488 6.481643 AGCCCAACTTGTGTTATGTACTATT 58.518 36.000 0.00 0.00 34.60 1.73
3611 9489 6.598064 AGCCCAACTTGTGTTATGTACTATTC 59.402 38.462 0.00 0.00 34.60 1.75
3613 9491 7.414098 GCCCAACTTGTGTTATGTACTATTCAG 60.414 40.741 0.00 0.00 34.60 3.02
3614 9492 7.822334 CCCAACTTGTGTTATGTACTATTCAGA 59.178 37.037 0.00 0.00 34.60 3.27
3616 9494 9.424319 CAACTTGTGTTATGTACTATTCAGAGT 57.576 33.333 0.00 0.00 34.60 3.24
3617 9495 9.640963 AACTTGTGTTATGTACTATTCAGAGTC 57.359 33.333 0.00 0.00 34.15 3.36
3618 9496 8.803235 ACTTGTGTTATGTACTATTCAGAGTCA 58.197 33.333 0.00 0.00 0.00 3.41
3619 9497 9.639601 CTTGTGTTATGTACTATTCAGAGTCAA 57.360 33.333 0.00 0.00 0.00 3.18
3620 9498 9.990360 TTGTGTTATGTACTATTCAGAGTCAAA 57.010 29.630 0.00 0.00 0.00 2.69
3653 9531 9.643693 ATTTTTATCTTGAGCAATGTTTCGAAT 57.356 25.926 0.00 0.00 0.00 3.34
3657 9535 9.720667 TTATCTTGAGCAATGTTTCGAATATTG 57.279 29.630 21.87 21.87 41.31 1.90
3658 9536 7.376435 TCTTGAGCAATGTTTCGAATATTGA 57.624 32.000 26.74 12.39 40.99 2.57
3659 9537 7.988737 TCTTGAGCAATGTTTCGAATATTGAT 58.011 30.769 26.74 23.42 40.53 2.57
3664 9542 9.935682 GAGCAATGTTTCGAATATTGATCTAAA 57.064 29.630 28.22 1.20 45.75 1.85
3701 9579 7.829725 ACATATTCATGTTGTGTTAATGCACT 58.170 30.769 0.00 0.00 42.98 4.40
3702 9580 8.955388 ACATATTCATGTTGTGTTAATGCACTA 58.045 29.630 0.00 0.00 42.98 2.74
3703 9581 9.786105 CATATTCATGTTGTGTTAATGCACTAA 57.214 29.630 0.00 0.00 39.89 2.24
3706 9584 8.741101 TTCATGTTGTGTTAATGCACTAATTC 57.259 30.769 0.00 0.00 39.89 2.17
3707 9585 8.109705 TCATGTTGTGTTAATGCACTAATTCT 57.890 30.769 0.00 0.00 39.89 2.40
3708 9586 8.236586 TCATGTTGTGTTAATGCACTAATTCTC 58.763 33.333 0.00 0.00 39.89 2.87
3709 9587 7.744087 TGTTGTGTTAATGCACTAATTCTCT 57.256 32.000 0.00 0.00 39.89 3.10
3710 9588 8.165239 TGTTGTGTTAATGCACTAATTCTCTT 57.835 30.769 0.00 0.00 39.89 2.85
3712 9590 8.507249 GTTGTGTTAATGCACTAATTCTCTTCT 58.493 33.333 0.00 0.00 39.89 2.85
3713 9591 9.719355 TTGTGTTAATGCACTAATTCTCTTCTA 57.281 29.630 0.00 0.00 39.89 2.10
3714 9592 9.371136 TGTGTTAATGCACTAATTCTCTTCTAG 57.629 33.333 0.00 0.00 39.89 2.43
3715 9593 9.587772 GTGTTAATGCACTAATTCTCTTCTAGA 57.412 33.333 0.00 0.00 36.51 2.43
3741 9619 6.653273 TTTTCGAACATTTTTGAATGTGCA 57.347 29.167 0.00 0.00 42.13 4.57
3742 9620 6.653273 TTTCGAACATTTTTGAATGTGCAA 57.347 29.167 0.00 2.60 42.13 4.08
3743 9621 5.633996 TCGAACATTTTTGAATGTGCAAC 57.366 34.783 10.07 0.00 42.13 4.17
3744 9622 4.205996 TCGAACATTTTTGAATGTGCAACG 59.794 37.500 10.07 10.79 42.13 4.10
3745 9623 4.605793 CGAACATTTTTGAATGTGCAACGG 60.606 41.667 10.07 0.00 42.13 4.44
3746 9624 3.129871 ACATTTTTGAATGTGCAACGGG 58.870 40.909 4.14 0.00 41.46 5.28
3747 9625 1.576356 TTTTTGAATGTGCAACGGGC 58.424 45.000 0.00 0.00 42.39 6.13
3771 9649 2.280524 TGCACCGGTAGCACACAC 60.281 61.111 22.47 1.42 37.02 3.82
3772 9650 2.280524 GCACCGGTAGCACACACA 60.281 61.111 19.85 0.00 0.00 3.72
3773 9651 2.604174 GCACCGGTAGCACACACAC 61.604 63.158 19.85 0.00 0.00 3.82
3774 9652 1.227409 CACCGGTAGCACACACACA 60.227 57.895 6.87 0.00 0.00 3.72
3828 9867 4.286297 TGGTCTTTTGTCTGTATGGAGG 57.714 45.455 0.00 0.00 0.00 4.30
3845 9884 2.094545 GGAGGGAATTGTGTGTCATTGC 60.095 50.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 56 9.261180 ACGGTCAACATTCTTTCTATACATATG 57.739 33.333 0.00 0.00 0.00 1.78
81 86 7.081349 TCAAATACAAGTTCGGCATTGTTTAG 58.919 34.615 5.58 0.00 40.09 1.85
86 91 6.761731 TTTTCAAATACAAGTTCGGCATTG 57.238 33.333 0.00 0.00 0.00 2.82
549 769 5.069501 AGTACACTATTTGAAGGACCGAC 57.930 43.478 0.00 0.00 0.00 4.79
552 772 6.051179 AGGAAGTACACTATTTGAAGGACC 57.949 41.667 0.00 0.00 0.00 4.46
601 833 7.572353 GCACAAACTCGGTCATATCAAACTTTA 60.572 37.037 0.00 0.00 0.00 1.85
824 1080 2.752030 ACCTAGCAACTAGATCCAGCA 58.248 47.619 0.00 0.00 36.26 4.41
900 1156 9.853555 TGTATTGAAACAGCGAAAATTATCATT 57.146 25.926 0.00 0.00 0.00 2.57
901 1157 9.507280 CTGTATTGAAACAGCGAAAATTATCAT 57.493 29.630 0.00 0.00 40.40 2.45
913 1169 6.540189 ACAGTGGATATCTGTATTGAAACAGC 59.460 38.462 2.05 0.00 45.34 4.40
1017 1273 4.994907 TTATGGACTAAGCTTCGCTACA 57.005 40.909 0.00 0.00 38.25 2.74
1024 1281 4.141390 CCACCAGGATTATGGACTAAGCTT 60.141 45.833 3.48 3.48 43.57 3.74
1032 1289 4.141041 CCATTTACCCACCAGGATTATGGA 60.141 45.833 0.00 0.00 43.57 3.41
1070 1327 8.151596 ACAAAAACCTGTCCAAAACTTCTTTTA 58.848 29.630 0.00 0.00 0.00 1.52
1075 1332 7.815549 TCTTTACAAAAACCTGTCCAAAACTTC 59.184 33.333 0.00 0.00 0.00 3.01
1220 1673 0.466124 TCATGTCACAACACCACCGA 59.534 50.000 0.00 0.00 38.48 4.69
1230 1683 1.506309 GGTGCAAGCGTCATGTCACA 61.506 55.000 0.00 0.00 31.12 3.58
1231 1684 1.207593 GGTGCAAGCGTCATGTCAC 59.792 57.895 0.00 0.00 0.00 3.67
1236 1689 1.739466 CATTAGTGGTGCAAGCGTCAT 59.261 47.619 0.00 0.00 36.92 3.06
1251 1704 2.228059 CAGCTGCTTCCCCATCATTAG 58.772 52.381 0.00 0.00 0.00 1.73
1253 1706 0.396695 CCAGCTGCTTCCCCATCATT 60.397 55.000 8.66 0.00 0.00 2.57
1270 1726 1.541379 TGTTGTCGCTCTAGCTACCA 58.459 50.000 4.40 0.00 36.08 3.25
1379 2000 8.856153 TTGGTACTGCTCAATTTTATACTCAA 57.144 30.769 0.00 0.00 0.00 3.02
1443 2064 0.664166 CAACTTTGGATGTGGCGCAC 60.664 55.000 10.83 6.37 34.56 5.34
1450 2074 6.183360 TGTCATTGCTTAACAACTTTGGATGT 60.183 34.615 0.00 0.00 42.27 3.06
1544 2170 2.089980 TGTACACGTAGAGGCTCTTCC 58.910 52.381 24.13 12.72 0.00 3.46
1569 2195 3.062909 TCTTTGAACCAGTTTCGAACACG 59.937 43.478 0.00 0.00 36.97 4.49
1571 2197 4.509616 TCTCTTTGAACCAGTTTCGAACA 58.490 39.130 0.00 0.00 36.97 3.18
1612 2239 3.320826 AGGTGTAATGAGGTGCCAAAAAC 59.679 43.478 0.00 0.00 0.00 2.43
1630 2257 1.221840 CTCCGGATGGTGGAAGGTG 59.778 63.158 3.57 0.00 34.44 4.00
1665 2301 1.439543 AGGTTCTCCTGCTCCTGTTT 58.560 50.000 0.00 0.00 43.33 2.83
1704 2340 0.914417 AAGGGGTGATGGGTCGATGT 60.914 55.000 0.00 0.00 0.00 3.06
1739 2375 3.057174 CGTGCCTGAGAAGAGAAACTAGT 60.057 47.826 0.00 0.00 0.00 2.57
1760 2396 2.208431 GAGAAGAGGCAATGGATGACG 58.792 52.381 0.00 0.00 44.22 4.35
1770 2406 3.068691 CCGGTCGGAGAAGAGGCA 61.069 66.667 2.83 0.00 39.69 4.75
1802 2438 3.658757 TGTTTGCTCTGGTTATTTGGC 57.341 42.857 0.00 0.00 0.00 4.52
1938 3470 2.772191 TGGTCCAGCCACACCAGT 60.772 61.111 0.00 0.00 43.61 4.00
2093 3660 3.436924 CGCCTTGCATGCAGAGCA 61.437 61.111 31.16 15.24 44.86 4.26
2125 3692 1.278127 GTGGAAGGTGAAGAATCCCGA 59.722 52.381 0.00 0.00 0.00 5.14
2130 3697 2.040412 GTCCTGGTGGAAGGTGAAGAAT 59.960 50.000 0.00 0.00 45.18 2.40
2182 3749 3.284449 GAACTTGCCGGCACCGTT 61.284 61.111 32.06 32.06 37.81 4.44
2235 3802 0.467384 CAATCAGCCCAGTCTCGGAT 59.533 55.000 0.00 0.00 0.00 4.18
2367 5212 7.819900 ACTTACTGCCTAAAGTACTCAAAGATG 59.180 37.037 0.00 0.00 34.23 2.90
2382 5227 1.967779 TCAGTGCACACTTACTGCCTA 59.032 47.619 21.04 0.00 43.02 3.93
2494 6988 1.197492 TGCACGCAAATCATGAGACAC 59.803 47.619 0.09 0.00 32.52 3.67
2593 7630 3.743899 GCCTCTGTCTTGAAGATGATCCC 60.744 52.174 0.00 0.00 0.00 3.85
2650 8038 3.491619 CGTTGTCCGATGGAGATCTTGAT 60.492 47.826 0.00 0.00 39.56 2.57
2700 8088 2.133641 GGCAGTGTTGGTTGGGCTT 61.134 57.895 0.00 0.00 0.00 4.35
2703 8091 3.977244 GCGGCAGTGTTGGTTGGG 61.977 66.667 0.00 0.00 0.00 4.12
2852 8679 9.520515 AAATCTCAAGCAATCCTTTCTAGTTTA 57.479 29.630 0.00 0.00 0.00 2.01
2940 8773 1.001158 GAGGTACACCGAGCTAGATGC 60.001 57.143 0.00 0.00 42.08 3.91
2942 8775 1.595466 CGAGGTACACCGAGCTAGAT 58.405 55.000 0.00 0.00 42.08 1.98
2954 8787 4.603946 GGGGCGGATGCGAGGTAC 62.604 72.222 12.10 0.00 44.10 3.34
3017 8850 5.126222 TGCTTTTTGTTTGGTCTGACATGTA 59.874 36.000 10.38 0.00 0.00 2.29
3149 9001 1.392407 TGATGGGGAAAATCAGGGGT 58.608 50.000 0.00 0.00 30.61 4.95
3225 9083 2.427812 TGTAGTGGAAATGGCATGCATG 59.572 45.455 22.70 22.70 0.00 4.06
3226 9084 2.737544 TGTAGTGGAAATGGCATGCAT 58.262 42.857 21.36 8.40 0.00 3.96
3227 9085 2.212812 TGTAGTGGAAATGGCATGCA 57.787 45.000 21.36 6.13 0.00 3.96
3228 9086 3.088194 CATGTAGTGGAAATGGCATGC 57.912 47.619 9.90 9.90 0.00 4.06
3344 9206 0.834612 AGAACTTCCGTCCACCAACA 59.165 50.000 0.00 0.00 0.00 3.33
3382 9244 8.902540 AAAATCAAAGGTGCTCGTATATATGA 57.097 30.769 4.59 4.59 0.00 2.15
3421 9283 3.290948 AACTTGCTTGACCCAACAGTA 57.709 42.857 0.00 0.00 0.00 2.74
3454 9324 3.840437 GCAACACCCTGCTTCACA 58.160 55.556 0.00 0.00 39.34 3.58
3460 9330 2.602257 AAGAAAAAGCAACACCCTGC 57.398 45.000 0.00 0.00 42.97 4.85
3461 9331 4.094739 CCAAAAAGAAAAAGCAACACCCTG 59.905 41.667 0.00 0.00 0.00 4.45
3462 9332 4.019771 TCCAAAAAGAAAAAGCAACACCCT 60.020 37.500 0.00 0.00 0.00 4.34
3518 9396 0.036952 CATGTGGCACGAAGGACTCT 60.037 55.000 13.77 0.00 0.00 3.24
3536 9414 5.483937 ACCCTGAATAGATAAGTGTCACACA 59.516 40.000 11.40 0.00 36.74 3.72
3542 9420 7.050377 CACATTGACCCTGAATAGATAAGTGT 58.950 38.462 0.00 0.00 0.00 3.55
3545 9423 6.294473 AGCACATTGACCCTGAATAGATAAG 58.706 40.000 0.00 0.00 0.00 1.73
3551 9429 5.132502 CCATTAGCACATTGACCCTGAATA 58.867 41.667 0.00 0.00 0.00 1.75
3552 9430 3.956199 CCATTAGCACATTGACCCTGAAT 59.044 43.478 0.00 0.00 0.00 2.57
3555 9433 2.026641 CCCATTAGCACATTGACCCTG 58.973 52.381 0.00 0.00 0.00 4.45
3556 9434 1.686115 GCCCATTAGCACATTGACCCT 60.686 52.381 0.00 0.00 0.00 4.34
3558 9436 0.746659 GGCCCATTAGCACATTGACC 59.253 55.000 0.00 0.00 0.00 4.02
3559 9437 1.473258 TGGCCCATTAGCACATTGAC 58.527 50.000 0.00 0.00 0.00 3.18
3561 9439 3.002102 GTTTTGGCCCATTAGCACATTG 58.998 45.455 0.00 0.00 0.00 2.82
3562 9440 2.905736 AGTTTTGGCCCATTAGCACATT 59.094 40.909 0.00 0.00 0.00 2.71
3563 9441 2.234414 CAGTTTTGGCCCATTAGCACAT 59.766 45.455 0.00 0.00 0.00 3.21
3565 9443 1.892474 TCAGTTTTGGCCCATTAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
3567 9445 2.675032 GCTTCAGTTTTGGCCCATTAGC 60.675 50.000 0.00 0.00 0.00 3.09
3569 9447 1.899142 GGCTTCAGTTTTGGCCCATTA 59.101 47.619 0.00 0.00 38.77 1.90
3571 9449 2.365410 GGCTTCAGTTTTGGCCCAT 58.635 52.632 0.00 0.00 38.77 4.00
3572 9450 3.869481 GGCTTCAGTTTTGGCCCA 58.131 55.556 0.00 0.00 38.77 5.36
3574 9452 0.249868 GTTGGGCTTCAGTTTTGGCC 60.250 55.000 0.00 0.00 45.24 5.36
3576 9454 2.168313 ACAAGTTGGGCTTCAGTTTTGG 59.832 45.455 7.96 0.00 34.69 3.28
3577 9455 3.189285 CACAAGTTGGGCTTCAGTTTTG 58.811 45.455 7.96 0.00 34.69 2.44
3578 9456 2.831526 ACACAAGTTGGGCTTCAGTTTT 59.168 40.909 4.63 0.00 34.69 2.43
3580 9458 2.143876 ACACAAGTTGGGCTTCAGTT 57.856 45.000 4.63 0.00 34.69 3.16
3581 9459 2.143876 AACACAAGTTGGGCTTCAGT 57.856 45.000 4.63 0.00 36.39 3.41
3582 9460 3.569701 ACATAACACAAGTTGGGCTTCAG 59.430 43.478 4.63 0.00 38.69 3.02
3583 9461 3.561143 ACATAACACAAGTTGGGCTTCA 58.439 40.909 4.63 0.00 38.69 3.02
3584 9462 4.760204 AGTACATAACACAAGTTGGGCTTC 59.240 41.667 4.63 0.00 38.69 3.86
3585 9463 4.725490 AGTACATAACACAAGTTGGGCTT 58.275 39.130 4.63 1.74 38.69 4.35
3586 9464 4.367039 AGTACATAACACAAGTTGGGCT 57.633 40.909 4.63 0.00 38.69 5.19
3589 9467 8.771920 TCTGAATAGTACATAACACAAGTTGG 57.228 34.615 7.96 0.00 38.69 3.77
3591 9469 9.640963 GACTCTGAATAGTACATAACACAAGTT 57.359 33.333 0.00 0.00 41.74 2.66
3592 9470 8.803235 TGACTCTGAATAGTACATAACACAAGT 58.197 33.333 0.00 0.00 0.00 3.16
3593 9471 9.639601 TTGACTCTGAATAGTACATAACACAAG 57.360 33.333 0.00 0.00 0.00 3.16
3594 9472 9.990360 TTTGACTCTGAATAGTACATAACACAA 57.010 29.630 0.00 0.00 0.00 3.33
3631 9509 9.720667 CAATATTCGAAACATTGCTCAAGATAA 57.279 29.630 17.69 0.00 0.00 1.75
3632 9510 9.108284 TCAATATTCGAAACATTGCTCAAGATA 57.892 29.630 21.98 7.68 31.21 1.98
3633 9511 7.988737 TCAATATTCGAAACATTGCTCAAGAT 58.011 30.769 21.98 0.00 31.21 2.40
3634 9512 7.376435 TCAATATTCGAAACATTGCTCAAGA 57.624 32.000 21.98 8.69 31.21 3.02
3635 9513 8.127327 AGATCAATATTCGAAACATTGCTCAAG 58.873 33.333 25.47 10.09 30.77 3.02
3636 9514 7.988737 AGATCAATATTCGAAACATTGCTCAA 58.011 30.769 25.47 14.43 30.77 3.02
3637 9515 7.558161 AGATCAATATTCGAAACATTGCTCA 57.442 32.000 25.47 14.65 30.77 4.26
3638 9516 9.935682 TTTAGATCAATATTCGAAACATTGCTC 57.064 29.630 21.98 21.35 31.21 4.26
3677 9555 9.786105 TTAGTGCATTAACACAACATGAATATG 57.214 29.630 0.00 0.00 43.23 1.78
3680 9558 9.357652 GAATTAGTGCATTAACACAACATGAAT 57.642 29.630 3.52 0.00 43.23 2.57
3681 9559 8.575589 AGAATTAGTGCATTAACACAACATGAA 58.424 29.630 3.52 0.00 43.23 2.57
3682 9560 8.109705 AGAATTAGTGCATTAACACAACATGA 57.890 30.769 3.52 0.00 43.23 3.07
3683 9561 8.239314 AGAGAATTAGTGCATTAACACAACATG 58.761 33.333 3.52 0.00 43.23 3.21
3685 9563 7.744087 AGAGAATTAGTGCATTAACACAACA 57.256 32.000 3.52 0.00 43.23 3.33
3686 9564 8.507249 AGAAGAGAATTAGTGCATTAACACAAC 58.493 33.333 3.52 1.63 43.23 3.32
3687 9565 8.621532 AGAAGAGAATTAGTGCATTAACACAA 57.378 30.769 3.52 0.00 43.23 3.33
3688 9566 9.371136 CTAGAAGAGAATTAGTGCATTAACACA 57.629 33.333 3.52 0.00 43.23 3.72
3689 9567 9.587772 TCTAGAAGAGAATTAGTGCATTAACAC 57.412 33.333 3.52 2.03 41.02 3.32
3726 9604 2.096318 GCCCGTTGCACATTCAAAAATG 60.096 45.455 0.00 0.00 46.42 2.32
3727 9605 2.142319 GCCCGTTGCACATTCAAAAAT 58.858 42.857 0.00 0.00 40.77 1.82
3728 9606 1.576356 GCCCGTTGCACATTCAAAAA 58.424 45.000 0.00 0.00 40.77 1.94
3729 9607 0.596083 CGCCCGTTGCACATTCAAAA 60.596 50.000 0.00 0.00 41.33 2.44
3730 9608 1.007964 CGCCCGTTGCACATTCAAA 60.008 52.632 0.00 0.00 41.33 2.69
3731 9609 1.894282 TCGCCCGTTGCACATTCAA 60.894 52.632 0.00 0.00 41.33 2.69
3732 9610 2.281139 TCGCCCGTTGCACATTCA 60.281 55.556 0.00 0.00 41.33 2.57
3733 9611 2.175811 GTCGCCCGTTGCACATTC 59.824 61.111 0.00 0.00 41.33 2.67
3734 9612 2.281484 AGTCGCCCGTTGCACATT 60.281 55.556 0.00 0.00 41.33 2.71
3735 9613 3.049674 CAGTCGCCCGTTGCACAT 61.050 61.111 0.00 0.00 41.33 3.21
3746 9624 4.367023 TACCGGTGCACCAGTCGC 62.367 66.667 34.16 7.59 35.14 5.19
3747 9625 2.126071 CTACCGGTGCACCAGTCG 60.126 66.667 34.16 21.75 35.14 4.18
3748 9626 2.434359 GCTACCGGTGCACCAGTC 60.434 66.667 34.16 15.31 35.14 3.51
3749 9627 3.238497 TGCTACCGGTGCACCAGT 61.238 61.111 34.16 30.59 35.31 4.00
3755 9633 2.280524 TGTGTGTGCTACCGGTGC 60.281 61.111 19.93 19.04 0.00 5.01
3756 9634 1.227409 TGTGTGTGTGCTACCGGTG 60.227 57.895 19.93 8.61 0.00 4.94
3759 9637 0.790207 GATGTGTGTGTGTGCTACCG 59.210 55.000 0.00 0.00 0.00 4.02
3760 9638 1.156736 GGATGTGTGTGTGTGCTACC 58.843 55.000 0.00 0.00 0.00 3.18
3761 9639 1.877637 TGGATGTGTGTGTGTGCTAC 58.122 50.000 0.00 0.00 0.00 3.58
3762 9640 2.217750 GTTGGATGTGTGTGTGTGCTA 58.782 47.619 0.00 0.00 0.00 3.49
3763 9641 1.024271 GTTGGATGTGTGTGTGTGCT 58.976 50.000 0.00 0.00 0.00 4.40
3764 9642 0.737804 TGTTGGATGTGTGTGTGTGC 59.262 50.000 0.00 0.00 0.00 4.57
3765 9643 3.365264 GCTATGTTGGATGTGTGTGTGTG 60.365 47.826 0.00 0.00 0.00 3.82
3766 9644 2.813754 GCTATGTTGGATGTGTGTGTGT 59.186 45.455 0.00 0.00 0.00 3.72
3767 9645 2.813172 TGCTATGTTGGATGTGTGTGTG 59.187 45.455 0.00 0.00 0.00 3.82
3768 9646 2.813754 GTGCTATGTTGGATGTGTGTGT 59.186 45.455 0.00 0.00 0.00 3.72
3769 9647 3.076621 AGTGCTATGTTGGATGTGTGTG 58.923 45.455 0.00 0.00 0.00 3.82
3770 9648 3.076621 CAGTGCTATGTTGGATGTGTGT 58.923 45.455 0.00 0.00 0.00 3.72
3771 9649 2.159476 GCAGTGCTATGTTGGATGTGTG 60.159 50.000 8.18 0.00 0.00 3.82
3772 9650 2.086869 GCAGTGCTATGTTGGATGTGT 58.913 47.619 8.18 0.00 0.00 3.72
3773 9651 1.402968 GGCAGTGCTATGTTGGATGTG 59.597 52.381 16.11 0.00 0.00 3.21
3774 9652 1.283029 AGGCAGTGCTATGTTGGATGT 59.717 47.619 16.11 0.00 0.00 3.06
3828 9867 3.665745 AAGGCAATGACACACAATTCC 57.334 42.857 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.