Multiple sequence alignment - TraesCS3B01G541400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G541400 chr3B 100.000 3275 0 0 1 3275 779583354 779580080 0.000000e+00 6048.0
1 TraesCS3B01G541400 chr3B 74.848 330 53 24 2706 3025 524770712 524771021 4.440000e-24 122.0
2 TraesCS3B01G541400 chr3D 89.241 2240 156 39 998 3190 581974908 581977109 0.000000e+00 2723.0
3 TraesCS3B01G541400 chr3D 75.986 279 40 20 2763 3024 454978258 454978526 5.740000e-23 119.0
4 TraesCS3B01G541400 chr3D 91.111 45 3 1 2334 2377 480040 479996 3.530000e-05 60.2
5 TraesCS3B01G541400 chr6D 81.151 1459 167 52 930 2321 406219883 406218466 0.000000e+00 1072.0
6 TraesCS3B01G541400 chr6D 81.544 298 34 19 2807 3094 301121728 301121442 3.290000e-55 226.0
7 TraesCS3B01G541400 chr6D 95.122 41 2 0 2337 2377 368363664 368363624 7.590000e-07 65.8
8 TraesCS3B01G541400 chr6A 81.172 1450 169 54 930 2321 552751150 552749747 0.000000e+00 1070.0
9 TraesCS3B01G541400 chr6A 80.000 415 67 14 2456 2865 50934342 50933939 3.200000e-75 292.0
10 TraesCS3B01G541400 chr6B 82.097 1335 152 48 965 2249 610262035 610260738 0.000000e+00 1061.0
11 TraesCS3B01G541400 chr6B 74.826 576 100 30 2456 3024 671094105 671094642 5.500000e-53 219.0
12 TraesCS3B01G541400 chr1D 92.929 594 31 4 1 593 483004892 483004309 0.000000e+00 854.0
13 TraesCS3B01G541400 chr1D 77.069 580 90 25 2452 3007 35669554 35668994 8.890000e-76 294.0
14 TraesCS3B01G541400 chr1D 80.660 212 37 4 2826 3035 375973193 375973402 9.400000e-36 161.0
15 TraesCS3B01G541400 chr4A 92.593 594 36 2 1 593 626487664 626487078 0.000000e+00 846.0
16 TraesCS3B01G541400 chr4A 81.088 386 61 8 1749 2130 640050125 640049748 6.870000e-77 298.0
17 TraesCS3B01G541400 chr5A 89.226 594 52 5 1 593 244702690 244702108 0.000000e+00 732.0
18 TraesCS3B01G541400 chr5A 77.949 712 102 38 2456 3142 533565459 533566140 8.520000e-106 394.0
19 TraesCS3B01G541400 chr5A 83.150 273 39 7 2461 2728 679114273 679114003 3.260000e-60 243.0
20 TraesCS3B01G541400 chr5D 79.014 710 108 32 2498 3179 5225817 5225121 6.450000e-122 448.0
21 TraesCS3B01G541400 chr5D 77.013 770 109 47 2456 3193 13636728 13635995 2.380000e-101 379.0
22 TraesCS3B01G541400 chr5D 77.229 729 100 47 2456 3160 478284572 478283886 1.860000e-97 366.0
23 TraesCS3B01G541400 chr5D 84.068 295 38 9 2456 2744 522105565 522105274 3.220000e-70 276.0
24 TraesCS3B01G541400 chr4B 79.310 667 96 30 2456 3095 664330917 664330266 2.330000e-116 429.0
25 TraesCS3B01G541400 chr2A 76.649 758 104 46 2456 3190 138534335 138535042 5.200000e-93 351.0
26 TraesCS3B01G541400 chr2B 77.572 593 95 27 2528 3095 738275165 738275744 1.130000e-84 324.0
27 TraesCS3B01G541400 chr1A 81.606 386 58 12 2470 2844 322787577 322787194 1.140000e-79 307.0
28 TraesCS3B01G541400 chr5B 75.834 749 95 47 2537 3274 157047249 157047922 5.310000e-78 302.0
29 TraesCS3B01G541400 chr5B 79.901 403 63 12 1759 2149 671349987 671350383 2.490000e-71 279.0
30 TraesCS3B01G541400 chr1B 77.922 539 78 30 2532 3046 640224681 640225202 6.870000e-77 298.0
31 TraesCS3B01G541400 chr1B 95.122 41 2 0 2337 2377 51601812 51601852 7.590000e-07 65.8
32 TraesCS3B01G541400 chr2D 73.724 666 111 46 2516 3148 4233335 4233969 5.540000e-48 202.0
33 TraesCS3B01G541400 chr2D 76.856 229 33 14 2669 2889 562227947 562228163 9.610000e-21 111.0
34 TraesCS3B01G541400 chr4D 79.524 210 30 13 2815 3019 53791907 53791706 1.580000e-28 137.0
35 TraesCS3B01G541400 chr7D 80.208 192 26 9 2968 3155 58888024 58887841 2.050000e-27 134.0
36 TraesCS3B01G541400 chr7D 95.122 41 2 0 2337 2377 603826480 603826520 7.590000e-07 65.8
37 TraesCS3B01G541400 chr7B 88.710 62 5 2 2334 2393 84023546 84023607 1.260000e-09 75.0
38 TraesCS3B01G541400 chr3A 93.333 45 2 1 2334 2377 9073157 9073201 7.590000e-07 65.8
39 TraesCS3B01G541400 chr7A 95.000 40 2 0 2337 2376 85627707 85627668 2.730000e-06 63.9
40 TraesCS3B01G541400 chr7A 95.000 40 2 0 2337 2376 85677379 85677340 2.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G541400 chr3B 779580080 779583354 3274 True 6048 6048 100.000 1 3275 1 chr3B.!!$R1 3274
1 TraesCS3B01G541400 chr3D 581974908 581977109 2201 False 2723 2723 89.241 998 3190 1 chr3D.!!$F2 2192
2 TraesCS3B01G541400 chr6D 406218466 406219883 1417 True 1072 1072 81.151 930 2321 1 chr6D.!!$R3 1391
3 TraesCS3B01G541400 chr6A 552749747 552751150 1403 True 1070 1070 81.172 930 2321 1 chr6A.!!$R2 1391
4 TraesCS3B01G541400 chr6B 610260738 610262035 1297 True 1061 1061 82.097 965 2249 1 chr6B.!!$R1 1284
5 TraesCS3B01G541400 chr6B 671094105 671094642 537 False 219 219 74.826 2456 3024 1 chr6B.!!$F1 568
6 TraesCS3B01G541400 chr1D 483004309 483004892 583 True 854 854 92.929 1 593 1 chr1D.!!$R2 592
7 TraesCS3B01G541400 chr1D 35668994 35669554 560 True 294 294 77.069 2452 3007 1 chr1D.!!$R1 555
8 TraesCS3B01G541400 chr4A 626487078 626487664 586 True 846 846 92.593 1 593 1 chr4A.!!$R1 592
9 TraesCS3B01G541400 chr5A 244702108 244702690 582 True 732 732 89.226 1 593 1 chr5A.!!$R1 592
10 TraesCS3B01G541400 chr5A 533565459 533566140 681 False 394 394 77.949 2456 3142 1 chr5A.!!$F1 686
11 TraesCS3B01G541400 chr5D 5225121 5225817 696 True 448 448 79.014 2498 3179 1 chr5D.!!$R1 681
12 TraesCS3B01G541400 chr5D 13635995 13636728 733 True 379 379 77.013 2456 3193 1 chr5D.!!$R2 737
13 TraesCS3B01G541400 chr5D 478283886 478284572 686 True 366 366 77.229 2456 3160 1 chr5D.!!$R3 704
14 TraesCS3B01G541400 chr4B 664330266 664330917 651 True 429 429 79.310 2456 3095 1 chr4B.!!$R1 639
15 TraesCS3B01G541400 chr2A 138534335 138535042 707 False 351 351 76.649 2456 3190 1 chr2A.!!$F1 734
16 TraesCS3B01G541400 chr2B 738275165 738275744 579 False 324 324 77.572 2528 3095 1 chr2B.!!$F1 567
17 TraesCS3B01G541400 chr5B 157047249 157047922 673 False 302 302 75.834 2537 3274 1 chr5B.!!$F1 737
18 TraesCS3B01G541400 chr1B 640224681 640225202 521 False 298 298 77.922 2532 3046 1 chr1B.!!$F2 514
19 TraesCS3B01G541400 chr2D 4233335 4233969 634 False 202 202 73.724 2516 3148 1 chr2D.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 776 0.115547 TAGGCTGGCGGGGATACATA 59.884 55.0 0.0 0.0 39.74 2.29 F
1557 1582 0.039437 GACGTGACTTTCTGAGGCGA 60.039 55.0 0.0 0.0 35.50 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1988 0.099082 GGTAGAGCTCCTCGAACGTG 59.901 60.000 10.93 0.0 35.36 4.49 R
2363 2454 1.676006 CGCCCCGATAGCTTGAAAAAT 59.324 47.619 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.599047 GGGTCCATGAGACTCTATCTTG 57.401 50.000 3.68 0.00 43.32 3.02
48 49 4.219115 GGTCCATGAGACTCTATCTTGGA 58.781 47.826 3.68 6.50 44.39 3.53
150 151 0.601046 TGATGGTGCGCTAGCTATGC 60.601 55.000 13.93 9.68 45.42 3.14
309 310 1.557832 AGCTACGGGGCTTTTCACATA 59.442 47.619 0.00 0.00 39.86 2.29
319 320 5.510179 GGGGCTTTTCACATATCATGATTGG 60.510 44.000 14.65 9.01 0.00 3.16
327 328 5.606329 TCACATATCATGATTGGGGTAGACA 59.394 40.000 14.65 0.00 0.00 3.41
407 408 6.426587 CCCTATCTTGAAGAATTTGGAGGAA 58.573 40.000 0.00 0.00 0.00 3.36
440 441 5.941733 AGTTTTGTTTCGTTTTCGGTTACT 58.058 33.333 0.00 0.00 44.25 2.24
455 456 2.237392 GGTTACTCATGTTGGGAGAGCT 59.763 50.000 0.00 0.00 36.26 4.09
462 463 4.264253 TCATGTTGGGAGAGCTTGTAATG 58.736 43.478 0.00 0.00 0.00 1.90
469 470 2.094417 GGAGAGCTTGTAATGTTCACGC 59.906 50.000 0.00 0.00 0.00 5.34
470 471 2.996621 GAGAGCTTGTAATGTTCACGCT 59.003 45.455 0.00 0.00 41.73 5.07
471 472 2.738846 AGAGCTTGTAATGTTCACGCTG 59.261 45.455 1.96 0.00 39.75 5.18
472 473 2.480419 GAGCTTGTAATGTTCACGCTGT 59.520 45.455 1.96 0.00 39.75 4.40
473 474 2.480419 AGCTTGTAATGTTCACGCTGTC 59.520 45.455 0.00 0.00 38.59 3.51
474 475 2.412847 GCTTGTAATGTTCACGCTGTCC 60.413 50.000 0.00 0.00 0.00 4.02
475 476 1.424403 TGTAATGTTCACGCTGTCCG 58.576 50.000 0.00 0.00 44.21 4.79
482 483 1.877576 TTCACGCTGTCCGCTGATCT 61.878 55.000 0.00 0.00 41.76 2.75
538 539 3.701542 TGATAGTTGGATCTCTGCGAGTT 59.298 43.478 5.66 0.00 0.00 3.01
593 595 6.462073 TTGTAACGCTTGATTCTGAAGTAC 57.538 37.500 0.00 0.00 0.00 2.73
594 596 5.779922 TGTAACGCTTGATTCTGAAGTACT 58.220 37.500 0.00 0.00 0.00 2.73
595 597 5.862323 TGTAACGCTTGATTCTGAAGTACTC 59.138 40.000 0.00 0.00 0.00 2.59
596 598 3.851098 ACGCTTGATTCTGAAGTACTCC 58.149 45.455 0.00 0.00 0.00 3.85
597 599 3.190874 CGCTTGATTCTGAAGTACTCCC 58.809 50.000 0.00 0.00 0.00 4.30
598 600 3.118956 CGCTTGATTCTGAAGTACTCCCT 60.119 47.826 0.00 0.00 0.00 4.20
599 601 4.438148 GCTTGATTCTGAAGTACTCCCTC 58.562 47.826 0.00 0.00 0.00 4.30
600 602 4.677584 CTTGATTCTGAAGTACTCCCTCG 58.322 47.826 0.00 0.00 0.00 4.63
601 603 3.024547 TGATTCTGAAGTACTCCCTCGG 58.975 50.000 0.00 0.00 0.00 4.63
602 604 1.183549 TTCTGAAGTACTCCCTCGGC 58.816 55.000 0.00 0.00 0.00 5.54
603 605 0.683504 TCTGAAGTACTCCCTCGGCC 60.684 60.000 0.00 0.00 0.00 6.13
604 606 1.677637 CTGAAGTACTCCCTCGGCCC 61.678 65.000 0.00 0.00 0.00 5.80
605 607 2.365237 AAGTACTCCCTCGGCCCC 60.365 66.667 0.00 0.00 0.00 5.80
606 608 3.248248 AAGTACTCCCTCGGCCCCA 62.248 63.158 0.00 0.00 0.00 4.96
607 609 2.446036 GTACTCCCTCGGCCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
608 610 1.152398 GTACTCCCTCGGCCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
609 611 0.761702 GTACTCCCTCGGCCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
610 612 0.471211 TACTCCCTCGGCCCCATAAG 60.471 60.000 0.00 0.00 0.00 1.73
611 613 1.766461 CTCCCTCGGCCCCATAAGT 60.766 63.158 0.00 0.00 0.00 2.24
612 614 2.044806 CTCCCTCGGCCCCATAAGTG 62.045 65.000 0.00 0.00 0.00 3.16
613 615 2.375345 CCCTCGGCCCCATAAGTGT 61.375 63.158 0.00 0.00 0.00 3.55
614 616 1.146263 CCTCGGCCCCATAAGTGTC 59.854 63.158 0.00 0.00 0.00 3.67
615 617 1.622607 CCTCGGCCCCATAAGTGTCA 61.623 60.000 0.00 0.00 0.00 3.58
616 618 0.251916 CTCGGCCCCATAAGTGTCAA 59.748 55.000 0.00 0.00 0.00 3.18
617 619 0.693622 TCGGCCCCATAAGTGTCAAA 59.306 50.000 0.00 0.00 0.00 2.69
618 620 1.074084 TCGGCCCCATAAGTGTCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
619 621 1.889829 CGGCCCCATAAGTGTCAAAAA 59.110 47.619 0.00 0.00 0.00 1.94
646 648 8.818141 AACGTCTTACATTATGATACAGATGG 57.182 34.615 0.00 0.00 0.00 3.51
647 649 8.178313 ACGTCTTACATTATGATACAGATGGA 57.822 34.615 0.00 0.00 0.00 3.41
648 650 8.300286 ACGTCTTACATTATGATACAGATGGAG 58.700 37.037 0.00 0.00 0.00 3.86
649 651 8.300286 CGTCTTACATTATGATACAGATGGAGT 58.700 37.037 0.00 0.00 0.00 3.85
699 701 6.894339 AAAATATAAGCATTAACCCTCCCG 57.106 37.500 0.00 0.00 32.17 5.14
700 702 5.578157 AATATAAGCATTAACCCTCCCGT 57.422 39.130 0.00 0.00 32.17 5.28
701 703 3.945640 ATAAGCATTAACCCTCCCGTT 57.054 42.857 0.00 0.00 32.17 4.44
702 704 2.597578 AAGCATTAACCCTCCCGTTT 57.402 45.000 0.00 0.00 0.00 3.60
703 705 3.724732 AAGCATTAACCCTCCCGTTTA 57.275 42.857 0.00 0.00 0.00 2.01
704 706 3.277142 AGCATTAACCCTCCCGTTTAG 57.723 47.619 0.00 0.00 0.00 1.85
705 707 2.574824 AGCATTAACCCTCCCGTTTAGT 59.425 45.455 0.00 0.00 0.00 2.24
706 708 3.009805 AGCATTAACCCTCCCGTTTAGTT 59.990 43.478 0.00 0.00 0.00 2.24
707 709 4.225717 AGCATTAACCCTCCCGTTTAGTTA 59.774 41.667 0.00 0.00 0.00 2.24
708 710 4.573607 GCATTAACCCTCCCGTTTAGTTAG 59.426 45.833 0.00 0.00 0.00 2.34
709 711 2.775911 AACCCTCCCGTTTAGTTAGC 57.224 50.000 0.00 0.00 0.00 3.09
710 712 0.533951 ACCCTCCCGTTTAGTTAGCG 59.466 55.000 0.00 0.00 0.00 4.26
711 713 0.533951 CCCTCCCGTTTAGTTAGCGT 59.466 55.000 0.00 0.00 0.00 5.07
712 714 1.066645 CCCTCCCGTTTAGTTAGCGTT 60.067 52.381 0.00 0.00 0.00 4.84
713 715 2.613725 CCCTCCCGTTTAGTTAGCGTTT 60.614 50.000 0.00 0.00 0.00 3.60
714 716 3.069289 CCTCCCGTTTAGTTAGCGTTTT 58.931 45.455 0.00 0.00 0.00 2.43
715 717 3.124128 CCTCCCGTTTAGTTAGCGTTTTC 59.876 47.826 0.00 0.00 0.00 2.29
717 719 2.476241 CCCGTTTAGTTAGCGTTTTCGT 59.524 45.455 0.00 0.00 46.03 3.85
718 720 3.059665 CCCGTTTAGTTAGCGTTTTCGTT 60.060 43.478 0.00 0.00 46.03 3.85
719 721 4.517287 CCGTTTAGTTAGCGTTTTCGTTT 58.483 39.130 0.00 0.00 46.03 3.60
720 722 4.963352 CCGTTTAGTTAGCGTTTTCGTTTT 59.037 37.500 0.00 0.00 46.03 2.43
721 723 6.126079 CCGTTTAGTTAGCGTTTTCGTTTTA 58.874 36.000 0.00 0.00 46.03 1.52
722 724 6.791775 CCGTTTAGTTAGCGTTTTCGTTTTAT 59.208 34.615 0.00 0.00 46.03 1.40
723 725 7.321034 CCGTTTAGTTAGCGTTTTCGTTTTATT 59.679 33.333 0.00 0.00 46.03 1.40
724 726 8.136698 CGTTTAGTTAGCGTTTTCGTTTTATTG 58.863 33.333 0.00 0.00 46.03 1.90
725 727 8.411928 GTTTAGTTAGCGTTTTCGTTTTATTGG 58.588 33.333 0.00 0.00 46.03 3.16
726 728 6.303021 AGTTAGCGTTTTCGTTTTATTGGA 57.697 33.333 0.00 0.00 46.03 3.53
727 729 6.368213 AGTTAGCGTTTTCGTTTTATTGGAG 58.632 36.000 0.00 0.00 46.03 3.86
728 730 3.561503 AGCGTTTTCGTTTTATTGGAGC 58.438 40.909 0.00 0.00 46.03 4.70
729 731 3.252458 AGCGTTTTCGTTTTATTGGAGCT 59.748 39.130 0.00 0.00 46.03 4.09
730 732 3.978855 GCGTTTTCGTTTTATTGGAGCTT 59.021 39.130 0.00 0.00 46.03 3.74
731 733 4.143618 GCGTTTTCGTTTTATTGGAGCTTG 60.144 41.667 0.00 0.00 46.03 4.01
732 734 5.209240 CGTTTTCGTTTTATTGGAGCTTGA 58.791 37.500 0.00 0.00 38.65 3.02
733 735 5.115021 CGTTTTCGTTTTATTGGAGCTTGAC 59.885 40.000 0.00 0.00 38.65 3.18
734 736 6.206498 GTTTTCGTTTTATTGGAGCTTGACT 58.794 36.000 0.00 0.00 0.00 3.41
735 737 5.607119 TTCGTTTTATTGGAGCTTGACTC 57.393 39.130 0.00 0.00 45.45 3.36
736 738 4.894784 TCGTTTTATTGGAGCTTGACTCT 58.105 39.130 0.00 0.00 45.48 3.24
737 739 5.305585 TCGTTTTATTGGAGCTTGACTCTT 58.694 37.500 0.00 0.00 45.48 2.85
738 740 5.763204 TCGTTTTATTGGAGCTTGACTCTTT 59.237 36.000 0.00 0.00 45.48 2.52
739 741 6.262273 TCGTTTTATTGGAGCTTGACTCTTTT 59.738 34.615 0.00 0.00 45.48 2.27
740 742 7.442969 TCGTTTTATTGGAGCTTGACTCTTTTA 59.557 33.333 0.00 0.00 45.48 1.52
741 743 8.073768 CGTTTTATTGGAGCTTGACTCTTTTAA 58.926 33.333 0.00 0.00 45.48 1.52
742 744 9.181805 GTTTTATTGGAGCTTGACTCTTTTAAC 57.818 33.333 0.00 0.00 45.48 2.01
743 745 8.691661 TTTATTGGAGCTTGACTCTTTTAACT 57.308 30.769 0.00 0.00 45.48 2.24
744 746 8.691661 TTATTGGAGCTTGACTCTTTTAACTT 57.308 30.769 0.00 0.00 45.48 2.66
745 747 6.377327 TTGGAGCTTGACTCTTTTAACTTG 57.623 37.500 0.00 0.00 45.48 3.16
746 748 5.437060 TGGAGCTTGACTCTTTTAACTTGT 58.563 37.500 0.00 0.00 45.48 3.16
747 749 5.527582 TGGAGCTTGACTCTTTTAACTTGTC 59.472 40.000 0.00 0.00 45.48 3.18
748 750 5.760743 GGAGCTTGACTCTTTTAACTTGTCT 59.239 40.000 0.00 0.00 45.48 3.41
749 751 6.073494 GGAGCTTGACTCTTTTAACTTGTCTC 60.073 42.308 0.00 0.00 45.48 3.36
750 752 6.587273 AGCTTGACTCTTTTAACTTGTCTCT 58.413 36.000 0.00 0.00 0.00 3.10
751 753 7.051000 AGCTTGACTCTTTTAACTTGTCTCTT 58.949 34.615 0.00 0.00 0.00 2.85
752 754 7.554476 AGCTTGACTCTTTTAACTTGTCTCTTT 59.446 33.333 0.00 0.00 0.00 2.52
753 755 7.853437 GCTTGACTCTTTTAACTTGTCTCTTTC 59.147 37.037 0.00 0.00 0.00 2.62
754 756 8.786826 TTGACTCTTTTAACTTGTCTCTTTCA 57.213 30.769 0.00 0.00 0.00 2.69
755 757 8.964476 TGACTCTTTTAACTTGTCTCTTTCAT 57.036 30.769 0.00 0.00 0.00 2.57
758 760 9.495572 ACTCTTTTAACTTGTCTCTTTCATAGG 57.504 33.333 0.00 0.00 0.00 2.57
759 761 8.324163 TCTTTTAACTTGTCTCTTTCATAGGC 57.676 34.615 0.00 0.00 0.00 3.93
760 762 8.157476 TCTTTTAACTTGTCTCTTTCATAGGCT 58.843 33.333 0.00 0.00 0.00 4.58
761 763 7.672983 TTTAACTTGTCTCTTTCATAGGCTG 57.327 36.000 0.00 0.00 0.00 4.85
762 764 4.213564 ACTTGTCTCTTTCATAGGCTGG 57.786 45.455 0.00 0.00 0.00 4.85
763 765 2.698855 TGTCTCTTTCATAGGCTGGC 57.301 50.000 0.00 0.00 0.00 4.85
764 766 1.134699 TGTCTCTTTCATAGGCTGGCG 60.135 52.381 0.00 0.00 0.00 5.69
765 767 0.465705 TCTCTTTCATAGGCTGGCGG 59.534 55.000 0.00 0.00 0.00 6.13
766 768 0.533755 CTCTTTCATAGGCTGGCGGG 60.534 60.000 0.00 0.00 0.00 6.13
767 769 1.526917 CTTTCATAGGCTGGCGGGG 60.527 63.158 0.00 0.00 0.00 5.73
768 770 1.983119 CTTTCATAGGCTGGCGGGGA 61.983 60.000 0.00 0.00 0.00 4.81
769 771 1.352622 TTTCATAGGCTGGCGGGGAT 61.353 55.000 0.00 0.00 0.00 3.85
770 772 0.472925 TTCATAGGCTGGCGGGGATA 60.473 55.000 0.00 0.00 0.00 2.59
771 773 1.192146 TCATAGGCTGGCGGGGATAC 61.192 60.000 0.00 0.00 0.00 2.24
772 774 1.152118 ATAGGCTGGCGGGGATACA 60.152 57.895 0.00 0.00 39.74 2.29
773 775 0.547712 ATAGGCTGGCGGGGATACAT 60.548 55.000 0.00 0.00 39.74 2.29
774 776 0.115547 TAGGCTGGCGGGGATACATA 59.884 55.000 0.00 0.00 39.74 2.29
775 777 1.194781 AGGCTGGCGGGGATACATAG 61.195 60.000 0.00 0.00 39.74 2.23
776 778 1.376037 GCTGGCGGGGATACATAGC 60.376 63.158 0.00 0.00 39.74 2.97
777 779 1.831652 GCTGGCGGGGATACATAGCT 61.832 60.000 0.00 0.00 39.74 3.32
778 780 0.687354 CTGGCGGGGATACATAGCTT 59.313 55.000 0.00 0.00 39.74 3.74
779 781 0.685097 TGGCGGGGATACATAGCTTC 59.315 55.000 0.00 0.00 39.74 3.86
780 782 0.977395 GGCGGGGATACATAGCTTCT 59.023 55.000 0.00 0.00 39.74 2.85
781 783 1.348036 GGCGGGGATACATAGCTTCTT 59.652 52.381 0.00 0.00 39.74 2.52
782 784 2.224548 GGCGGGGATACATAGCTTCTTT 60.225 50.000 0.00 0.00 39.74 2.52
783 785 3.477530 GCGGGGATACATAGCTTCTTTT 58.522 45.455 0.00 0.00 39.74 2.27
784 786 3.883489 GCGGGGATACATAGCTTCTTTTT 59.117 43.478 0.00 0.00 39.74 1.94
785 787 4.023963 GCGGGGATACATAGCTTCTTTTTC 60.024 45.833 0.00 0.00 39.74 2.29
786 788 4.515567 CGGGGATACATAGCTTCTTTTTCC 59.484 45.833 0.00 0.00 39.74 3.13
787 789 4.515567 GGGGATACATAGCTTCTTTTTCCG 59.484 45.833 0.00 0.00 39.74 4.30
788 790 5.123936 GGGATACATAGCTTCTTTTTCCGT 58.876 41.667 0.00 0.00 39.74 4.69
789 791 5.007724 GGGATACATAGCTTCTTTTTCCGTG 59.992 44.000 0.00 0.00 39.74 4.94
790 792 5.585047 GGATACATAGCTTCTTTTTCCGTGT 59.415 40.000 0.00 0.00 0.00 4.49
791 793 6.093633 GGATACATAGCTTCTTTTTCCGTGTT 59.906 38.462 0.00 0.00 0.00 3.32
792 794 5.767816 ACATAGCTTCTTTTTCCGTGTTT 57.232 34.783 0.00 0.00 0.00 2.83
793 795 5.519722 ACATAGCTTCTTTTTCCGTGTTTG 58.480 37.500 0.00 0.00 0.00 2.93
794 796 5.298276 ACATAGCTTCTTTTTCCGTGTTTGA 59.702 36.000 0.00 0.00 0.00 2.69
795 797 4.712122 AGCTTCTTTTTCCGTGTTTGAA 57.288 36.364 0.00 0.00 0.00 2.69
796 798 4.421058 AGCTTCTTTTTCCGTGTTTGAAC 58.579 39.130 0.00 0.00 0.00 3.18
797 799 4.082463 AGCTTCTTTTTCCGTGTTTGAACA 60.082 37.500 0.00 0.00 36.38 3.18
798 800 4.265320 GCTTCTTTTTCCGTGTTTGAACAG 59.735 41.667 0.00 0.00 40.05 3.16
799 801 4.364415 TCTTTTTCCGTGTTTGAACAGG 57.636 40.909 9.04 9.04 42.66 4.00
800 802 3.759618 TCTTTTTCCGTGTTTGAACAGGT 59.240 39.130 13.51 0.00 41.75 4.00
801 803 4.942483 TCTTTTTCCGTGTTTGAACAGGTA 59.058 37.500 13.51 0.00 41.75 3.08
802 804 5.591067 TCTTTTTCCGTGTTTGAACAGGTAT 59.409 36.000 13.51 0.00 41.75 2.73
803 805 6.766944 TCTTTTTCCGTGTTTGAACAGGTATA 59.233 34.615 13.51 0.00 41.75 1.47
804 806 7.446013 TCTTTTTCCGTGTTTGAACAGGTATAT 59.554 33.333 13.51 0.00 41.75 0.86
805 807 6.489127 TTTCCGTGTTTGAACAGGTATATG 57.511 37.500 13.51 1.31 41.75 1.78
806 808 5.155278 TCCGTGTTTGAACAGGTATATGT 57.845 39.130 13.51 0.00 41.75 2.29
807 809 4.932799 TCCGTGTTTGAACAGGTATATGTG 59.067 41.667 13.51 0.18 41.75 3.21
808 810 4.094294 CCGTGTTTGAACAGGTATATGTGG 59.906 45.833 13.51 0.00 41.75 4.17
809 811 4.436852 CGTGTTTGAACAGGTATATGTGGC 60.437 45.833 8.07 0.00 40.05 5.01
810 812 4.013728 TGTTTGAACAGGTATATGTGGCC 58.986 43.478 0.00 0.00 34.30 5.36
811 813 2.613026 TGAACAGGTATATGTGGCCG 57.387 50.000 0.00 0.00 32.52 6.13
812 814 1.834896 TGAACAGGTATATGTGGCCGT 59.165 47.619 0.00 0.00 32.52 5.68
813 815 3.032459 TGAACAGGTATATGTGGCCGTA 58.968 45.455 0.00 0.00 32.52 4.02
814 816 3.644265 TGAACAGGTATATGTGGCCGTAT 59.356 43.478 0.00 0.00 32.52 3.06
815 817 4.833938 TGAACAGGTATATGTGGCCGTATA 59.166 41.667 0.00 0.00 32.52 1.47
816 818 5.047590 TGAACAGGTATATGTGGCCGTATAG 60.048 44.000 0.00 0.00 32.52 1.31
817 819 3.767673 ACAGGTATATGTGGCCGTATAGG 59.232 47.826 0.00 0.00 35.92 2.57
818 820 4.021229 CAGGTATATGTGGCCGTATAGGA 58.979 47.826 0.00 0.00 45.00 2.94
828 830 3.041508 GCCGTATAGGACTTGGATTCC 57.958 52.381 0.00 0.00 45.00 3.01
829 831 2.367567 GCCGTATAGGACTTGGATTCCA 59.632 50.000 0.00 0.00 45.00 3.53
830 832 3.181458 GCCGTATAGGACTTGGATTCCAA 60.181 47.826 17.09 17.09 45.00 3.53
831 833 4.685030 GCCGTATAGGACTTGGATTCCAAA 60.685 45.833 18.49 4.52 42.39 3.28
832 834 4.814771 CCGTATAGGACTTGGATTCCAAAC 59.185 45.833 18.49 14.52 42.39 2.93
833 835 4.814771 CGTATAGGACTTGGATTCCAAACC 59.185 45.833 23.07 23.07 43.44 3.27
834 836 4.946160 ATAGGACTTGGATTCCAAACCA 57.054 40.909 27.96 19.61 43.44 3.67
835 837 3.833559 AGGACTTGGATTCCAAACCAT 57.166 42.857 27.96 16.17 43.44 3.55
836 838 3.701664 AGGACTTGGATTCCAAACCATC 58.298 45.455 27.96 19.11 43.44 3.51
837 839 3.075882 AGGACTTGGATTCCAAACCATCA 59.924 43.478 27.96 7.25 43.44 3.07
838 840 3.193479 GGACTTGGATTCCAAACCATCAC 59.807 47.826 24.46 11.24 43.44 3.06
839 841 2.819608 ACTTGGATTCCAAACCATCACG 59.180 45.455 18.49 7.42 43.44 4.35
840 842 2.577606 TGGATTCCAAACCATCACGT 57.422 45.000 1.94 0.00 0.00 4.49
841 843 2.870175 TGGATTCCAAACCATCACGTT 58.130 42.857 1.94 0.00 0.00 3.99
842 844 2.556189 TGGATTCCAAACCATCACGTTG 59.444 45.455 1.94 0.00 0.00 4.10
843 845 2.595386 GATTCCAAACCATCACGTTGC 58.405 47.619 0.00 0.00 0.00 4.17
844 846 1.686355 TTCCAAACCATCACGTTGCT 58.314 45.000 0.00 0.00 0.00 3.91
845 847 2.552599 TCCAAACCATCACGTTGCTA 57.447 45.000 0.00 0.00 0.00 3.49
846 848 2.422597 TCCAAACCATCACGTTGCTAG 58.577 47.619 0.00 0.00 0.00 3.42
847 849 1.468520 CCAAACCATCACGTTGCTAGG 59.531 52.381 0.00 0.00 0.00 3.02
848 850 2.151202 CAAACCATCACGTTGCTAGGT 58.849 47.619 0.00 0.00 0.00 3.08
849 851 2.552315 CAAACCATCACGTTGCTAGGTT 59.448 45.455 0.00 0.00 40.81 3.50
850 852 2.094762 ACCATCACGTTGCTAGGTTC 57.905 50.000 0.00 0.00 0.00 3.62
851 853 0.999406 CCATCACGTTGCTAGGTTCG 59.001 55.000 0.00 0.00 0.00 3.95
852 854 1.671850 CCATCACGTTGCTAGGTTCGT 60.672 52.381 0.00 0.00 36.99 3.85
853 855 2.416296 CCATCACGTTGCTAGGTTCGTA 60.416 50.000 0.00 0.00 35.13 3.43
854 856 2.336554 TCACGTTGCTAGGTTCGTAC 57.663 50.000 0.00 0.00 35.13 3.67
855 857 0.979811 CACGTTGCTAGGTTCGTACG 59.020 55.000 9.53 9.53 35.13 3.67
856 858 0.593128 ACGTTGCTAGGTTCGTACGT 59.407 50.000 16.05 0.00 37.40 3.57
857 859 0.979811 CGTTGCTAGGTTCGTACGTG 59.020 55.000 16.05 1.53 0.00 4.49
858 860 1.343506 GTTGCTAGGTTCGTACGTGG 58.656 55.000 16.05 0.00 0.00 4.94
859 861 0.388907 TTGCTAGGTTCGTACGTGGC 60.389 55.000 16.05 14.58 44.05 5.01
860 862 1.246056 TGCTAGGTTCGTACGTGGCT 61.246 55.000 20.16 0.32 44.09 4.75
861 863 0.734889 GCTAGGTTCGTACGTGGCTA 59.265 55.000 16.05 0.00 41.60 3.93
862 864 1.336125 GCTAGGTTCGTACGTGGCTAT 59.664 52.381 16.05 0.73 41.60 2.97
863 865 2.549754 GCTAGGTTCGTACGTGGCTATA 59.450 50.000 16.05 1.88 41.60 1.31
864 866 3.190118 GCTAGGTTCGTACGTGGCTATAT 59.810 47.826 16.05 0.00 41.60 0.86
865 867 4.393062 GCTAGGTTCGTACGTGGCTATATA 59.607 45.833 16.05 0.00 41.60 0.86
866 868 4.756084 AGGTTCGTACGTGGCTATATAC 57.244 45.455 16.05 1.36 0.00 1.47
867 869 4.392940 AGGTTCGTACGTGGCTATATACT 58.607 43.478 16.05 0.00 0.00 2.12
868 870 4.823989 AGGTTCGTACGTGGCTATATACTT 59.176 41.667 16.05 0.00 0.00 2.24
869 871 5.049129 AGGTTCGTACGTGGCTATATACTTC 60.049 44.000 16.05 0.00 0.00 3.01
870 872 4.652175 TCGTACGTGGCTATATACTTCG 57.348 45.455 16.05 0.00 0.00 3.79
871 873 4.058124 TCGTACGTGGCTATATACTTCGT 58.942 43.478 16.05 0.00 0.00 3.85
872 874 4.084380 TCGTACGTGGCTATATACTTCGTG 60.084 45.833 16.05 0.00 0.00 4.35
873 875 4.319046 CGTACGTGGCTATATACTTCGTGT 60.319 45.833 7.22 0.00 0.00 4.49
874 876 4.644103 ACGTGGCTATATACTTCGTGTT 57.356 40.909 0.00 0.00 0.00 3.32
875 877 4.604976 ACGTGGCTATATACTTCGTGTTC 58.395 43.478 0.00 0.00 0.00 3.18
876 878 3.662645 CGTGGCTATATACTTCGTGTTCG 59.337 47.826 0.00 0.00 38.55 3.95
877 879 4.553351 CGTGGCTATATACTTCGTGTTCGA 60.553 45.833 0.00 0.00 44.66 3.71
887 889 2.693797 TCGTGTTCGAAGTGTAGGAC 57.306 50.000 0.00 0.00 43.34 3.85
888 890 2.224606 TCGTGTTCGAAGTGTAGGACT 58.775 47.619 0.00 0.00 43.34 3.85
890 892 2.724690 CGTGTTCGAAGTGTAGGACTTG 59.275 50.000 0.00 0.00 45.48 3.16
891 893 3.057734 GTGTTCGAAGTGTAGGACTTGG 58.942 50.000 0.00 0.00 45.48 3.61
892 894 2.960384 TGTTCGAAGTGTAGGACTTGGA 59.040 45.455 0.00 0.00 45.48 3.53
893 895 3.243636 TGTTCGAAGTGTAGGACTTGGAC 60.244 47.826 0.00 0.00 45.86 4.02
894 896 2.872732 TCGAAGTGTAGGACTTGGACT 58.127 47.619 0.00 0.00 45.48 3.85
895 897 2.818432 TCGAAGTGTAGGACTTGGACTC 59.182 50.000 0.00 0.00 45.48 3.36
896 898 2.094649 CGAAGTGTAGGACTTGGACTCC 60.095 54.545 0.00 0.00 45.48 3.85
897 899 2.696526 AGTGTAGGACTTGGACTCCA 57.303 50.000 0.00 0.00 0.00 3.86
898 900 2.972348 AGTGTAGGACTTGGACTCCAA 58.028 47.619 10.23 10.23 41.69 3.53
899 901 3.314693 AGTGTAGGACTTGGACTCCAAA 58.685 45.455 11.77 0.00 43.44 3.28
900 902 3.071167 AGTGTAGGACTTGGACTCCAAAC 59.929 47.826 11.77 7.21 43.44 2.93
901 903 2.370849 TGTAGGACTTGGACTCCAAACC 59.629 50.000 18.76 18.76 43.44 3.27
902 904 1.518367 AGGACTTGGACTCCAAACCA 58.482 50.000 24.16 2.74 43.44 3.67
903 905 2.065799 AGGACTTGGACTCCAAACCAT 58.934 47.619 24.16 11.30 43.44 3.55
904 906 2.447047 AGGACTTGGACTCCAAACCATT 59.553 45.455 24.16 10.71 43.44 3.16
905 907 3.655777 AGGACTTGGACTCCAAACCATTA 59.344 43.478 24.16 1.25 43.44 1.90
906 908 4.292306 AGGACTTGGACTCCAAACCATTAT 59.708 41.667 24.16 9.97 43.44 1.28
907 909 4.399303 GGACTTGGACTCCAAACCATTATG 59.601 45.833 20.35 7.86 43.44 1.90
908 910 4.998051 ACTTGGACTCCAAACCATTATGT 58.002 39.130 11.77 1.17 43.44 2.29
909 911 5.393866 ACTTGGACTCCAAACCATTATGTT 58.606 37.500 11.77 0.00 43.44 2.71
910 912 5.243730 ACTTGGACTCCAAACCATTATGTTG 59.756 40.000 11.77 0.00 43.44 3.33
911 913 3.509575 TGGACTCCAAACCATTATGTTGC 59.490 43.478 0.00 0.00 0.00 4.17
912 914 3.763897 GGACTCCAAACCATTATGTTGCT 59.236 43.478 0.00 0.00 0.00 3.91
913 915 4.947388 GGACTCCAAACCATTATGTTGCTA 59.053 41.667 0.00 0.00 0.00 3.49
914 916 5.163652 GGACTCCAAACCATTATGTTGCTAC 60.164 44.000 0.00 0.00 0.00 3.58
915 917 4.394920 ACTCCAAACCATTATGTTGCTACG 59.605 41.667 0.00 0.00 0.00 3.51
916 918 3.127895 TCCAAACCATTATGTTGCTACGC 59.872 43.478 0.00 0.00 0.00 4.42
917 919 3.128589 CCAAACCATTATGTTGCTACGCT 59.871 43.478 0.00 0.00 0.00 5.07
918 920 4.097714 CAAACCATTATGTTGCTACGCTG 58.902 43.478 0.00 0.00 0.00 5.18
919 921 2.288666 ACCATTATGTTGCTACGCTGG 58.711 47.619 6.67 6.67 0.00 4.85
920 922 2.288666 CCATTATGTTGCTACGCTGGT 58.711 47.619 0.00 0.00 0.00 4.00
921 923 2.682856 CCATTATGTTGCTACGCTGGTT 59.317 45.455 0.00 0.00 0.00 3.67
922 924 3.487376 CCATTATGTTGCTACGCTGGTTG 60.487 47.826 0.00 0.00 0.00 3.77
923 925 1.732941 TATGTTGCTACGCTGGTTGG 58.267 50.000 0.00 0.00 0.00 3.77
924 926 0.960364 ATGTTGCTACGCTGGTTGGG 60.960 55.000 0.00 0.00 0.00 4.12
925 927 1.302192 GTTGCTACGCTGGTTGGGA 60.302 57.895 0.00 0.00 0.00 4.37
926 928 0.887387 GTTGCTACGCTGGTTGGGAA 60.887 55.000 0.00 0.00 0.00 3.97
927 929 0.887387 TTGCTACGCTGGTTGGGAAC 60.887 55.000 0.00 0.00 0.00 3.62
928 930 1.302192 GCTACGCTGGTTGGGAACA 60.302 57.895 0.00 0.00 39.83 3.18
941 943 3.245315 GAACACGTCCGATCCGCG 61.245 66.667 0.00 0.00 40.47 6.46
945 947 3.950254 ACGTCCGATCCGCGCTAG 61.950 66.667 5.56 0.00 39.11 3.42
947 949 2.719979 GTCCGATCCGCGCTAGAA 59.280 61.111 5.56 0.00 39.11 2.10
950 952 1.065928 CCGATCCGCGCTAGAAAGT 59.934 57.895 5.56 0.00 39.11 2.66
952 954 1.663445 CCGATCCGCGCTAGAAAGTAG 60.663 57.143 5.56 0.00 39.11 2.57
953 955 1.263484 CGATCCGCGCTAGAAAGTAGA 59.737 52.381 5.56 0.00 0.00 2.59
954 956 2.652795 GATCCGCGCTAGAAAGTAGAC 58.347 52.381 5.56 0.00 0.00 2.59
959 961 2.670229 CGCGCTAGAAAGTAGACAACCA 60.670 50.000 5.56 0.00 0.00 3.67
1054 1058 3.923864 TGAACGACGCCCTGCACT 61.924 61.111 0.00 0.00 0.00 4.40
1076 1080 1.632589 GTGGGGCAGGTCAAAGAAAT 58.367 50.000 0.00 0.00 0.00 2.17
1144 1148 4.222847 GCTTCTACCGGGGCGAGG 62.223 72.222 6.32 0.10 0.00 4.63
1212 1216 2.513897 GGCCATCCCGACCTTTCG 60.514 66.667 0.00 0.00 45.44 3.46
1218 1222 1.305930 ATCCCGACCTTTCGCAAAGC 61.306 55.000 3.86 0.00 44.43 3.51
1231 1244 4.021925 AAAGCCTCCGCGCCTTCT 62.022 61.111 0.00 0.00 41.18 2.85
1429 1454 3.175240 CGCTGCTCTTCCACGTCG 61.175 66.667 0.00 0.00 0.00 5.12
1452 1477 2.507324 GAGGTCAAGCTCGACGCC 60.507 66.667 0.00 0.00 40.39 5.68
1458 1483 0.737367 TCAAGCTCGACGCCAATCAG 60.737 55.000 0.00 0.00 40.39 2.90
1523 1548 3.508840 CCTCCGCGGTTTCATGGC 61.509 66.667 27.15 0.00 0.00 4.40
1533 1558 1.092348 GTTTCATGGCGTACCTTCCC 58.908 55.000 0.00 0.00 36.63 3.97
1557 1582 0.039437 GACGTGACTTTCTGAGGCGA 60.039 55.000 0.00 0.00 35.50 5.54
1686 1723 4.712425 AAACCCCGCGTCGACGAG 62.712 66.667 39.74 35.20 43.02 4.18
1728 1765 1.666872 CTCCCCAACAACCGTCGAC 60.667 63.158 5.18 5.18 0.00 4.20
1839 1876 3.434984 GCACCAAGAAAGCACTAGAAGAG 59.565 47.826 0.00 0.00 0.00 2.85
1854 1927 0.178981 AAGAGCTCAAGCCAAAGCCA 60.179 50.000 17.77 0.00 43.38 4.75
1856 1929 0.607489 GAGCTCAAGCCAAAGCCAGA 60.607 55.000 9.40 0.00 43.38 3.86
1861 1934 1.421268 TCAAGCCAAAGCCAGAGAAGA 59.579 47.619 0.00 0.00 41.25 2.87
1864 1937 3.166560 AGCCAAAGCCAGAGAAGAAAT 57.833 42.857 0.00 0.00 41.25 2.17
1875 1948 2.159170 AGAGAAGAAATCGCCGGAAGAG 60.159 50.000 5.05 0.00 0.00 2.85
1888 1961 1.289380 GAAGAGGTCAAGCCGTCGT 59.711 57.895 0.00 0.00 43.70 4.34
1889 1962 0.733223 GAAGAGGTCAAGCCGTCGTC 60.733 60.000 0.00 0.00 43.70 4.20
1890 1963 2.473664 AAGAGGTCAAGCCGTCGTCG 62.474 60.000 0.00 0.00 43.70 5.12
1938 2012 2.522193 GAGGAGCTCTACCCCGGG 60.522 72.222 15.80 15.80 0.00 5.73
1979 2053 1.065928 GGGAGATGTACGGCGACAG 59.934 63.158 16.62 0.00 31.51 3.51
2036 2110 2.183811 CACCGAGCTGGCTCTGAG 59.816 66.667 18.13 8.59 43.94 3.35
2072 2146 2.124778 GGAGAAGCTGGAGCAGGC 60.125 66.667 0.65 0.00 45.16 4.85
2129 2203 4.444024 CGTTGTGCGCCCGATGTG 62.444 66.667 4.18 0.00 0.00 3.21
2281 2371 2.288666 GTGGCATGATTTAGCTTCCGA 58.711 47.619 0.00 0.00 0.00 4.55
2291 2381 4.875544 TTTAGCTTCCGAAAATCGATGG 57.124 40.909 0.00 0.00 43.74 3.51
2328 2419 2.100584 GGTTCATTGAAGTGTGTGCCAA 59.899 45.455 0.00 0.00 0.00 4.52
2347 2438 3.719816 AAAAACCACTCCCTCCGTC 57.280 52.632 0.00 0.00 0.00 4.79
2348 2439 1.137697 AAAAACCACTCCCTCCGTCT 58.862 50.000 0.00 0.00 0.00 4.18
2363 2454 5.243954 CCCTCCGTCTCACAATATAAGATCA 59.756 44.000 0.00 0.00 0.00 2.92
2382 2473 2.687935 TCATTTTTCAAGCTATCGGGGC 59.312 45.455 0.00 0.00 0.00 5.80
2383 2474 1.091537 TTTTTCAAGCTATCGGGGCG 58.908 50.000 0.00 0.00 34.52 6.13
2385 2476 1.618876 TTTCAAGCTATCGGGGCGGA 61.619 55.000 0.00 0.00 34.52 5.54
2400 2492 3.211865 GGGCGGAGGGAGTAAAAATAAG 58.788 50.000 0.00 0.00 0.00 1.73
2402 2494 3.626217 GGCGGAGGGAGTAAAAATAAGTG 59.374 47.826 0.00 0.00 0.00 3.16
2406 2498 5.627040 CGGAGGGAGTAAAAATAAGTGCTCT 60.627 44.000 0.00 0.00 0.00 4.09
2422 2514 7.454260 AAGTGCTCTAAAATAGGTCCTTTTG 57.546 36.000 0.00 0.00 0.00 2.44
2424 2516 6.881602 AGTGCTCTAAAATAGGTCCTTTTGAG 59.118 38.462 0.00 2.90 31.41 3.02
2436 2528 5.899547 AGGTCCTTTTGAGTCCTGAATTTTT 59.100 36.000 0.00 0.00 0.00 1.94
2897 3329 8.638565 GTGTGTATAGAAAAATGTTGAACATGC 58.361 33.333 12.09 2.49 37.97 4.06
3174 3667 8.828029 TGAAAAATAAAACCGAAAAACAATGC 57.172 26.923 0.00 0.00 0.00 3.56
3175 3668 8.450964 TGAAAAATAAAACCGAAAAACAATGCA 58.549 25.926 0.00 0.00 0.00 3.96
3176 3669 9.278734 GAAAAATAAAACCGAAAAACAATGCAA 57.721 25.926 0.00 0.00 0.00 4.08
3213 3709 8.528044 AATAACTAGGAAAACAGTGAAAACCA 57.472 30.769 0.00 0.00 0.00 3.67
3219 3715 9.463443 CTAGGAAAACAGTGAAAACCAATAAAG 57.537 33.333 0.00 0.00 0.00 1.85
3221 3717 8.197439 AGGAAAACAGTGAAAACCAATAAAGAG 58.803 33.333 0.00 0.00 0.00 2.85
3223 3719 9.581099 GAAAACAGTGAAAACCAATAAAGAGAA 57.419 29.630 0.00 0.00 0.00 2.87
3226 3722 9.586435 AACAGTGAAAACCAATAAAGAGAAAAG 57.414 29.630 0.00 0.00 0.00 2.27
3227 3723 8.197439 ACAGTGAAAACCAATAAAGAGAAAAGG 58.803 33.333 0.00 0.00 0.00 3.11
3268 3764 8.503196 ACATTGAACCAAGAAAGAAACAAAAAC 58.497 29.630 0.00 0.00 0.00 2.43
3270 3766 8.438676 TTGAACCAAGAAAGAAACAAAAACAA 57.561 26.923 0.00 0.00 0.00 2.83
3273 3769 9.381027 GAACCAAGAAAGAAACAAAAACAAAAG 57.619 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.403249 CCACTTTATTGCCTGCACAGC 60.403 52.381 0.00 0.00 0.00 4.40
46 47 2.530958 TTTCGCCGGGAGTTCCATCC 62.531 60.000 2.18 0.00 38.76 3.51
48 49 1.078426 CTTTCGCCGGGAGTTCCAT 60.078 57.895 2.18 0.00 37.91 3.41
87 88 2.925706 TGGCGGCCTCCAACACTA 60.926 61.111 21.46 0.00 32.18 2.74
288 289 0.321298 TGTGAAAAGCCCCGTAGCTC 60.321 55.000 0.00 0.00 44.11 4.09
309 310 2.779430 TGCTGTCTACCCCAATCATGAT 59.221 45.455 1.18 1.18 0.00 2.45
319 320 4.865865 GCTCCATGCTGTCTACCC 57.134 61.111 0.00 0.00 38.95 3.69
340 341 0.316196 GCGCGAATTCCAAAGATCGG 60.316 55.000 12.10 0.00 35.91 4.18
344 345 1.233950 TGCTGCGCGAATTCCAAAGA 61.234 50.000 12.10 0.00 0.00 2.52
383 384 6.006275 TCCTCCAAATTCTTCAAGATAGGG 57.994 41.667 0.00 0.00 0.00 3.53
407 408 9.874215 GAAAACGAAACAAAACTAGCTACTAAT 57.126 29.630 0.00 0.00 0.00 1.73
440 441 4.263462 ACATTACAAGCTCTCCCAACATGA 60.263 41.667 0.00 0.00 0.00 3.07
455 456 1.795872 CGGACAGCGTGAACATTACAA 59.204 47.619 0.00 0.00 0.00 2.41
469 470 1.357258 GCACACAGATCAGCGGACAG 61.357 60.000 0.00 0.00 0.00 3.51
470 471 1.374631 GCACACAGATCAGCGGACA 60.375 57.895 0.00 0.00 0.00 4.02
471 472 0.173481 TAGCACACAGATCAGCGGAC 59.827 55.000 0.00 0.00 0.00 4.79
472 473 0.894835 TTAGCACACAGATCAGCGGA 59.105 50.000 0.00 0.00 0.00 5.54
473 474 1.284657 CTTAGCACACAGATCAGCGG 58.715 55.000 0.00 0.00 0.00 5.52
474 475 0.649475 GCTTAGCACACAGATCAGCG 59.351 55.000 0.00 0.00 0.00 5.18
475 476 2.021355 AGCTTAGCACACAGATCAGC 57.979 50.000 7.07 0.00 0.00 4.26
538 539 4.873010 AGGCAGTCTACTAGGAAATCTGA 58.127 43.478 0.00 0.00 0.00 3.27
593 595 1.766461 ACTTATGGGGCCGAGGGAG 60.766 63.158 0.00 0.00 0.00 4.30
594 596 2.070039 CACTTATGGGGCCGAGGGA 61.070 63.158 0.00 0.00 0.00 4.20
595 597 2.325393 GACACTTATGGGGCCGAGGG 62.325 65.000 0.00 0.00 0.00 4.30
596 598 1.146263 GACACTTATGGGGCCGAGG 59.854 63.158 0.00 0.00 0.00 4.63
597 599 0.251916 TTGACACTTATGGGGCCGAG 59.748 55.000 0.00 0.00 0.00 4.63
598 600 0.693622 TTTGACACTTATGGGGCCGA 59.306 50.000 0.00 0.00 0.00 5.54
599 601 1.540267 TTTTGACACTTATGGGGCCG 58.460 50.000 0.00 0.00 0.00 6.13
620 622 9.261180 CCATCTGTATCATAATGTAAGACGTTT 57.739 33.333 0.00 0.00 0.00 3.60
621 623 8.638873 TCCATCTGTATCATAATGTAAGACGTT 58.361 33.333 0.00 0.00 0.00 3.99
622 624 8.178313 TCCATCTGTATCATAATGTAAGACGT 57.822 34.615 0.00 0.00 0.00 4.34
623 625 8.300286 ACTCCATCTGTATCATAATGTAAGACG 58.700 37.037 0.00 0.00 0.00 4.18
675 677 6.837048 ACGGGAGGGTTAATGCTTATATTTTT 59.163 34.615 0.00 0.00 0.00 1.94
676 678 6.370453 ACGGGAGGGTTAATGCTTATATTTT 58.630 36.000 0.00 0.00 0.00 1.82
677 679 5.948842 ACGGGAGGGTTAATGCTTATATTT 58.051 37.500 0.00 0.00 0.00 1.40
678 680 5.578157 ACGGGAGGGTTAATGCTTATATT 57.422 39.130 0.00 0.00 0.00 1.28
679 681 5.578157 AACGGGAGGGTTAATGCTTATAT 57.422 39.130 0.00 0.00 0.00 0.86
680 682 5.376756 AAACGGGAGGGTTAATGCTTATA 57.623 39.130 0.00 0.00 0.00 0.98
681 683 3.945640 AACGGGAGGGTTAATGCTTAT 57.054 42.857 0.00 0.00 0.00 1.73
682 684 3.724732 AAACGGGAGGGTTAATGCTTA 57.275 42.857 0.00 0.00 0.00 3.09
683 685 2.597578 AAACGGGAGGGTTAATGCTT 57.402 45.000 0.00 0.00 0.00 3.91
684 686 2.574824 ACTAAACGGGAGGGTTAATGCT 59.425 45.455 0.00 0.00 0.00 3.79
685 687 2.995283 ACTAAACGGGAGGGTTAATGC 58.005 47.619 0.00 0.00 0.00 3.56
686 688 4.573607 GCTAACTAAACGGGAGGGTTAATG 59.426 45.833 0.00 0.00 0.00 1.90
687 689 4.681512 CGCTAACTAAACGGGAGGGTTAAT 60.682 45.833 0.00 0.00 0.00 1.40
688 690 3.368323 CGCTAACTAAACGGGAGGGTTAA 60.368 47.826 0.00 0.00 0.00 2.01
689 691 2.166254 CGCTAACTAAACGGGAGGGTTA 59.834 50.000 0.00 0.00 0.00 2.85
690 692 1.066645 CGCTAACTAAACGGGAGGGTT 60.067 52.381 0.00 0.00 0.00 4.11
691 693 0.533951 CGCTAACTAAACGGGAGGGT 59.466 55.000 0.00 0.00 0.00 4.34
692 694 0.533951 ACGCTAACTAAACGGGAGGG 59.466 55.000 0.00 0.00 0.00 4.30
693 695 2.375173 AACGCTAACTAAACGGGAGG 57.625 50.000 0.00 0.00 0.00 4.30
694 696 3.181537 CGAAAACGCTAACTAAACGGGAG 60.182 47.826 0.00 0.00 0.00 4.30
695 697 2.730928 CGAAAACGCTAACTAAACGGGA 59.269 45.455 0.00 0.00 0.00 5.14
696 698 2.476241 ACGAAAACGCTAACTAAACGGG 59.524 45.455 0.00 0.00 0.00 5.28
697 699 3.776043 ACGAAAACGCTAACTAAACGG 57.224 42.857 0.00 0.00 0.00 4.44
698 700 7.750354 ATAAAACGAAAACGCTAACTAAACG 57.250 32.000 0.00 0.00 0.00 3.60
699 701 8.411928 CCAATAAAACGAAAACGCTAACTAAAC 58.588 33.333 0.00 0.00 0.00 2.01
700 702 8.341173 TCCAATAAAACGAAAACGCTAACTAAA 58.659 29.630 0.00 0.00 0.00 1.85
701 703 7.859598 TCCAATAAAACGAAAACGCTAACTAA 58.140 30.769 0.00 0.00 0.00 2.24
702 704 7.418840 TCCAATAAAACGAAAACGCTAACTA 57.581 32.000 0.00 0.00 0.00 2.24
703 705 6.303021 TCCAATAAAACGAAAACGCTAACT 57.697 33.333 0.00 0.00 0.00 2.24
704 706 5.058856 GCTCCAATAAAACGAAAACGCTAAC 59.941 40.000 0.00 0.00 0.00 2.34
705 707 5.049267 AGCTCCAATAAAACGAAAACGCTAA 60.049 36.000 0.00 0.00 0.00 3.09
706 708 4.453136 AGCTCCAATAAAACGAAAACGCTA 59.547 37.500 0.00 0.00 0.00 4.26
707 709 3.252458 AGCTCCAATAAAACGAAAACGCT 59.748 39.130 0.00 0.00 0.00 5.07
708 710 3.561503 AGCTCCAATAAAACGAAAACGC 58.438 40.909 0.00 0.00 0.00 4.84
709 711 5.115021 GTCAAGCTCCAATAAAACGAAAACG 59.885 40.000 0.00 0.00 0.00 3.60
710 712 6.206498 AGTCAAGCTCCAATAAAACGAAAAC 58.794 36.000 0.00 0.00 0.00 2.43
711 713 6.262273 AGAGTCAAGCTCCAATAAAACGAAAA 59.738 34.615 0.00 0.00 45.21 2.29
712 714 5.763204 AGAGTCAAGCTCCAATAAAACGAAA 59.237 36.000 0.00 0.00 45.21 3.46
713 715 5.305585 AGAGTCAAGCTCCAATAAAACGAA 58.694 37.500 0.00 0.00 45.21 3.85
714 716 4.894784 AGAGTCAAGCTCCAATAAAACGA 58.105 39.130 0.00 0.00 45.21 3.85
715 717 5.613358 AAGAGTCAAGCTCCAATAAAACG 57.387 39.130 0.00 0.00 45.21 3.60
716 718 9.181805 GTTAAAAGAGTCAAGCTCCAATAAAAC 57.818 33.333 0.00 0.00 45.21 2.43
717 719 9.131791 AGTTAAAAGAGTCAAGCTCCAATAAAA 57.868 29.630 0.00 0.00 45.21 1.52
718 720 8.691661 AGTTAAAAGAGTCAAGCTCCAATAAA 57.308 30.769 0.00 0.00 45.21 1.40
719 721 8.567948 CAAGTTAAAAGAGTCAAGCTCCAATAA 58.432 33.333 0.00 0.00 45.21 1.40
720 722 7.719633 ACAAGTTAAAAGAGTCAAGCTCCAATA 59.280 33.333 0.00 0.00 45.21 1.90
721 723 6.547510 ACAAGTTAAAAGAGTCAAGCTCCAAT 59.452 34.615 0.00 0.00 45.21 3.16
722 724 5.885912 ACAAGTTAAAAGAGTCAAGCTCCAA 59.114 36.000 0.00 0.00 45.21 3.53
723 725 5.437060 ACAAGTTAAAAGAGTCAAGCTCCA 58.563 37.500 0.00 0.00 45.21 3.86
724 726 5.760743 AGACAAGTTAAAAGAGTCAAGCTCC 59.239 40.000 0.00 0.00 45.21 4.70
725 727 6.704050 AGAGACAAGTTAAAAGAGTCAAGCTC 59.296 38.462 0.00 0.00 44.45 4.09
726 728 6.587273 AGAGACAAGTTAAAAGAGTCAAGCT 58.413 36.000 0.00 0.00 0.00 3.74
727 729 6.852858 AGAGACAAGTTAAAAGAGTCAAGC 57.147 37.500 0.00 0.00 0.00 4.01
728 730 8.883731 TGAAAGAGACAAGTTAAAAGAGTCAAG 58.116 33.333 0.00 0.00 0.00 3.02
729 731 8.786826 TGAAAGAGACAAGTTAAAAGAGTCAA 57.213 30.769 0.00 0.00 0.00 3.18
730 732 8.964476 ATGAAAGAGACAAGTTAAAAGAGTCA 57.036 30.769 0.00 0.00 0.00 3.41
732 734 9.495572 CCTATGAAAGAGACAAGTTAAAAGAGT 57.504 33.333 0.00 0.00 0.00 3.24
733 735 8.447053 GCCTATGAAAGAGACAAGTTAAAAGAG 58.553 37.037 0.00 0.00 0.00 2.85
734 736 8.157476 AGCCTATGAAAGAGACAAGTTAAAAGA 58.843 33.333 0.00 0.00 0.00 2.52
735 737 8.233190 CAGCCTATGAAAGAGACAAGTTAAAAG 58.767 37.037 0.00 0.00 0.00 2.27
736 738 7.174946 CCAGCCTATGAAAGAGACAAGTTAAAA 59.825 37.037 0.00 0.00 0.00 1.52
737 739 6.655003 CCAGCCTATGAAAGAGACAAGTTAAA 59.345 38.462 0.00 0.00 0.00 1.52
738 740 6.173339 CCAGCCTATGAAAGAGACAAGTTAA 58.827 40.000 0.00 0.00 0.00 2.01
739 741 5.734720 CCAGCCTATGAAAGAGACAAGTTA 58.265 41.667 0.00 0.00 0.00 2.24
740 742 4.583871 CCAGCCTATGAAAGAGACAAGTT 58.416 43.478 0.00 0.00 0.00 2.66
741 743 3.620966 GCCAGCCTATGAAAGAGACAAGT 60.621 47.826 0.00 0.00 0.00 3.16
742 744 2.941720 GCCAGCCTATGAAAGAGACAAG 59.058 50.000 0.00 0.00 0.00 3.16
743 745 2.677902 CGCCAGCCTATGAAAGAGACAA 60.678 50.000 0.00 0.00 0.00 3.18
744 746 1.134699 CGCCAGCCTATGAAAGAGACA 60.135 52.381 0.00 0.00 0.00 3.41
745 747 1.576356 CGCCAGCCTATGAAAGAGAC 58.424 55.000 0.00 0.00 0.00 3.36
746 748 0.465705 CCGCCAGCCTATGAAAGAGA 59.534 55.000 0.00 0.00 0.00 3.10
747 749 0.533755 CCCGCCAGCCTATGAAAGAG 60.534 60.000 0.00 0.00 0.00 2.85
748 750 1.526887 CCCGCCAGCCTATGAAAGA 59.473 57.895 0.00 0.00 0.00 2.52
749 751 1.526917 CCCCGCCAGCCTATGAAAG 60.527 63.158 0.00 0.00 0.00 2.62
750 752 1.352622 ATCCCCGCCAGCCTATGAAA 61.353 55.000 0.00 0.00 0.00 2.69
751 753 0.472925 TATCCCCGCCAGCCTATGAA 60.473 55.000 0.00 0.00 0.00 2.57
752 754 1.157513 TATCCCCGCCAGCCTATGA 59.842 57.895 0.00 0.00 0.00 2.15
753 755 1.296715 GTATCCCCGCCAGCCTATG 59.703 63.158 0.00 0.00 0.00 2.23
754 756 0.547712 ATGTATCCCCGCCAGCCTAT 60.548 55.000 0.00 0.00 0.00 2.57
755 757 0.115547 TATGTATCCCCGCCAGCCTA 59.884 55.000 0.00 0.00 0.00 3.93
756 758 1.152118 TATGTATCCCCGCCAGCCT 60.152 57.895 0.00 0.00 0.00 4.58
757 759 1.296715 CTATGTATCCCCGCCAGCC 59.703 63.158 0.00 0.00 0.00 4.85
758 760 1.376037 GCTATGTATCCCCGCCAGC 60.376 63.158 0.00 0.00 0.00 4.85
759 761 0.687354 AAGCTATGTATCCCCGCCAG 59.313 55.000 0.00 0.00 0.00 4.85
760 762 0.685097 GAAGCTATGTATCCCCGCCA 59.315 55.000 0.00 0.00 0.00 5.69
761 763 0.977395 AGAAGCTATGTATCCCCGCC 59.023 55.000 0.00 0.00 0.00 6.13
762 764 2.841442 AAGAAGCTATGTATCCCCGC 57.159 50.000 0.00 0.00 0.00 6.13
763 765 4.515567 GGAAAAAGAAGCTATGTATCCCCG 59.484 45.833 0.00 0.00 0.00 5.73
764 766 4.515567 CGGAAAAAGAAGCTATGTATCCCC 59.484 45.833 0.00 0.00 0.00 4.81
765 767 5.007724 CACGGAAAAAGAAGCTATGTATCCC 59.992 44.000 0.00 0.00 0.00 3.85
766 768 5.585047 ACACGGAAAAAGAAGCTATGTATCC 59.415 40.000 0.00 0.00 0.00 2.59
767 769 6.663944 ACACGGAAAAAGAAGCTATGTATC 57.336 37.500 0.00 0.00 0.00 2.24
768 770 7.174253 TCAAACACGGAAAAAGAAGCTATGTAT 59.826 33.333 0.00 0.00 0.00 2.29
769 771 6.483974 TCAAACACGGAAAAAGAAGCTATGTA 59.516 34.615 0.00 0.00 0.00 2.29
770 772 5.298276 TCAAACACGGAAAAAGAAGCTATGT 59.702 36.000 0.00 0.00 0.00 2.29
771 773 5.757886 TCAAACACGGAAAAAGAAGCTATG 58.242 37.500 0.00 0.00 0.00 2.23
772 774 6.183360 TGTTCAAACACGGAAAAAGAAGCTAT 60.183 34.615 0.00 0.00 33.17 2.97
773 775 5.124138 TGTTCAAACACGGAAAAAGAAGCTA 59.876 36.000 0.00 0.00 33.17 3.32
774 776 4.082463 TGTTCAAACACGGAAAAAGAAGCT 60.082 37.500 0.00 0.00 33.17 3.74
775 777 4.170256 TGTTCAAACACGGAAAAAGAAGC 58.830 39.130 0.00 0.00 33.17 3.86
776 778 4.798387 CCTGTTCAAACACGGAAAAAGAAG 59.202 41.667 5.82 0.00 34.70 2.85
777 779 4.218852 ACCTGTTCAAACACGGAAAAAGAA 59.781 37.500 14.34 0.00 34.70 2.52
778 780 3.759618 ACCTGTTCAAACACGGAAAAAGA 59.240 39.130 14.34 0.00 34.70 2.52
779 781 4.104696 ACCTGTTCAAACACGGAAAAAG 57.895 40.909 14.34 0.00 34.70 2.27
780 782 5.838531 ATACCTGTTCAAACACGGAAAAA 57.161 34.783 14.34 2.95 34.70 1.94
781 783 6.487331 ACATATACCTGTTCAAACACGGAAAA 59.513 34.615 14.34 4.58 34.70 2.29
782 784 5.998981 ACATATACCTGTTCAAACACGGAAA 59.001 36.000 14.34 6.23 34.70 3.13
783 785 5.410132 CACATATACCTGTTCAAACACGGAA 59.590 40.000 14.34 0.00 34.70 4.30
784 786 4.932799 CACATATACCTGTTCAAACACGGA 59.067 41.667 14.34 0.32 34.70 4.69
785 787 4.094294 CCACATATACCTGTTCAAACACGG 59.906 45.833 8.77 8.77 34.70 4.94
786 788 4.436852 GCCACATATACCTGTTCAAACACG 60.437 45.833 0.00 0.00 34.70 4.49
787 789 4.142469 GGCCACATATACCTGTTCAAACAC 60.142 45.833 0.00 0.00 34.70 3.32
788 790 4.013728 GGCCACATATACCTGTTCAAACA 58.986 43.478 0.00 0.00 37.37 2.83
789 791 3.064820 CGGCCACATATACCTGTTCAAAC 59.935 47.826 2.24 0.00 0.00 2.93
790 792 3.275143 CGGCCACATATACCTGTTCAAA 58.725 45.455 2.24 0.00 0.00 2.69
791 793 2.237643 ACGGCCACATATACCTGTTCAA 59.762 45.455 2.24 0.00 0.00 2.69
792 794 1.834896 ACGGCCACATATACCTGTTCA 59.165 47.619 2.24 0.00 0.00 3.18
793 795 2.614829 ACGGCCACATATACCTGTTC 57.385 50.000 2.24 0.00 0.00 3.18
794 796 4.222145 CCTATACGGCCACATATACCTGTT 59.778 45.833 2.24 0.00 0.00 3.16
795 797 3.767673 CCTATACGGCCACATATACCTGT 59.232 47.826 2.24 0.00 0.00 4.00
796 798 4.021229 TCCTATACGGCCACATATACCTG 58.979 47.826 2.24 0.00 0.00 4.00
797 799 4.021916 GTCCTATACGGCCACATATACCT 58.978 47.826 2.24 0.00 0.00 3.08
798 800 4.021916 AGTCCTATACGGCCACATATACC 58.978 47.826 2.24 0.00 0.00 2.73
799 801 5.408356 CAAGTCCTATACGGCCACATATAC 58.592 45.833 2.24 1.39 0.00 1.47
800 802 4.464951 CCAAGTCCTATACGGCCACATATA 59.535 45.833 2.24 0.77 0.00 0.86
801 803 3.260884 CCAAGTCCTATACGGCCACATAT 59.739 47.826 2.24 0.00 0.00 1.78
802 804 2.631062 CCAAGTCCTATACGGCCACATA 59.369 50.000 2.24 0.00 0.00 2.29
803 805 1.416401 CCAAGTCCTATACGGCCACAT 59.584 52.381 2.24 0.00 0.00 3.21
804 806 0.828022 CCAAGTCCTATACGGCCACA 59.172 55.000 2.24 0.00 0.00 4.17
805 807 1.117150 TCCAAGTCCTATACGGCCAC 58.883 55.000 2.24 0.00 0.00 5.01
806 808 2.097110 ATCCAAGTCCTATACGGCCA 57.903 50.000 2.24 0.00 0.00 5.36
807 809 2.289506 GGAATCCAAGTCCTATACGGCC 60.290 54.545 0.00 0.00 31.94 6.13
808 810 2.367567 TGGAATCCAAGTCCTATACGGC 59.632 50.000 0.00 0.00 36.03 5.68
809 811 4.682778 TTGGAATCCAAGTCCTATACGG 57.317 45.455 11.23 0.00 38.75 4.02
810 812 4.814771 GGTTTGGAATCCAAGTCCTATACG 59.185 45.833 22.08 0.00 44.84 3.06
811 813 5.751586 TGGTTTGGAATCCAAGTCCTATAC 58.248 41.667 26.20 16.56 44.84 1.47
812 814 6.159575 TGATGGTTTGGAATCCAAGTCCTATA 59.840 38.462 26.20 14.75 44.84 1.31
813 815 4.946160 TGGTTTGGAATCCAAGTCCTAT 57.054 40.909 26.20 0.00 44.84 2.57
814 816 4.290985 TGATGGTTTGGAATCCAAGTCCTA 59.709 41.667 26.20 18.03 44.84 2.94
815 817 3.075882 TGATGGTTTGGAATCCAAGTCCT 59.924 43.478 26.20 17.39 44.84 3.85
816 818 3.193479 GTGATGGTTTGGAATCCAAGTCC 59.807 47.826 22.37 22.37 44.84 3.85
817 819 3.119849 CGTGATGGTTTGGAATCCAAGTC 60.120 47.826 14.96 11.85 44.84 3.01
818 820 2.819608 CGTGATGGTTTGGAATCCAAGT 59.180 45.455 14.96 3.18 44.84 3.16
819 821 2.819608 ACGTGATGGTTTGGAATCCAAG 59.180 45.455 14.96 3.61 44.84 3.61
820 822 2.870175 ACGTGATGGTTTGGAATCCAA 58.130 42.857 11.23 11.23 42.29 3.53
821 823 2.556189 CAACGTGATGGTTTGGAATCCA 59.444 45.455 0.00 0.00 38.14 3.41
822 824 2.671070 GCAACGTGATGGTTTGGAATCC 60.671 50.000 0.00 0.00 0.00 3.01
823 825 2.228822 AGCAACGTGATGGTTTGGAATC 59.771 45.455 0.00 0.00 0.00 2.52
824 826 2.238521 AGCAACGTGATGGTTTGGAAT 58.761 42.857 0.00 0.00 0.00 3.01
825 827 1.686355 AGCAACGTGATGGTTTGGAA 58.314 45.000 0.00 0.00 0.00 3.53
826 828 2.422597 CTAGCAACGTGATGGTTTGGA 58.577 47.619 0.00 0.00 32.43 3.53
827 829 1.468520 CCTAGCAACGTGATGGTTTGG 59.531 52.381 0.00 0.00 32.43 3.28
828 830 2.151202 ACCTAGCAACGTGATGGTTTG 58.849 47.619 0.00 0.00 32.43 2.93
829 831 2.561478 ACCTAGCAACGTGATGGTTT 57.439 45.000 0.00 0.00 32.43 3.27
830 832 2.423577 GAACCTAGCAACGTGATGGTT 58.576 47.619 10.16 10.16 40.05 3.67
831 833 1.671850 CGAACCTAGCAACGTGATGGT 60.672 52.381 0.00 0.00 34.89 3.55
832 834 0.999406 CGAACCTAGCAACGTGATGG 59.001 55.000 0.00 0.00 0.00 3.51
833 835 1.710013 ACGAACCTAGCAACGTGATG 58.290 50.000 0.00 0.00 37.58 3.07
834 836 2.730090 CGTACGAACCTAGCAACGTGAT 60.730 50.000 10.44 0.00 39.28 3.06
835 837 1.400113 CGTACGAACCTAGCAACGTGA 60.400 52.381 10.44 0.62 39.28 4.35
836 838 0.979811 CGTACGAACCTAGCAACGTG 59.020 55.000 10.44 0.00 39.28 4.49
837 839 0.593128 ACGTACGAACCTAGCAACGT 59.407 50.000 24.41 10.14 41.66 3.99
838 840 0.979811 CACGTACGAACCTAGCAACG 59.020 55.000 24.41 0.00 36.48 4.10
839 841 1.343506 CCACGTACGAACCTAGCAAC 58.656 55.000 24.41 0.00 0.00 4.17
840 842 0.388907 GCCACGTACGAACCTAGCAA 60.389 55.000 24.41 0.00 0.00 3.91
841 843 1.213537 GCCACGTACGAACCTAGCA 59.786 57.895 24.41 0.00 0.00 3.49
842 844 0.734889 TAGCCACGTACGAACCTAGC 59.265 55.000 24.41 13.98 0.00 3.42
843 845 5.641209 AGTATATAGCCACGTACGAACCTAG 59.359 44.000 24.41 4.54 0.00 3.02
844 846 5.551233 AGTATATAGCCACGTACGAACCTA 58.449 41.667 24.41 17.21 0.00 3.08
845 847 4.392940 AGTATATAGCCACGTACGAACCT 58.607 43.478 24.41 15.64 0.00 3.50
846 848 4.756084 AGTATATAGCCACGTACGAACC 57.244 45.455 24.41 8.90 0.00 3.62
847 849 4.842911 CGAAGTATATAGCCACGTACGAAC 59.157 45.833 24.41 10.47 0.00 3.95
848 850 4.511454 ACGAAGTATATAGCCACGTACGAA 59.489 41.667 24.41 1.85 41.94 3.85
849 851 4.058124 ACGAAGTATATAGCCACGTACGA 58.942 43.478 24.41 0.00 41.94 3.43
850 852 4.146719 CACGAAGTATATAGCCACGTACG 58.853 47.826 15.01 15.01 41.61 3.67
851 853 5.100751 ACACGAAGTATATAGCCACGTAC 57.899 43.478 0.00 0.00 41.61 3.67
852 854 5.558844 CGAACACGAAGTATATAGCCACGTA 60.559 44.000 0.00 0.00 41.61 3.57
853 855 4.604976 GAACACGAAGTATATAGCCACGT 58.395 43.478 0.00 0.00 41.61 4.49
854 856 3.662645 CGAACACGAAGTATATAGCCACG 59.337 47.826 0.00 0.00 41.61 4.94
855 857 4.852138 TCGAACACGAAGTATATAGCCAC 58.148 43.478 0.00 0.00 41.61 5.01
856 858 5.503662 TTCGAACACGAAGTATATAGCCA 57.496 39.130 0.00 0.00 41.61 4.75
867 869 2.620115 AGTCCTACACTTCGAACACGAA 59.380 45.455 0.00 0.00 42.45 3.85
868 870 2.224606 AGTCCTACACTTCGAACACGA 58.775 47.619 0.00 0.00 26.56 4.35
869 871 2.701073 AGTCCTACACTTCGAACACG 57.299 50.000 0.00 0.00 26.56 4.49
870 872 3.057734 CCAAGTCCTACACTTCGAACAC 58.942 50.000 0.00 0.00 44.14 3.32
871 873 2.960384 TCCAAGTCCTACACTTCGAACA 59.040 45.455 0.00 0.00 44.14 3.18
872 874 3.005578 AGTCCAAGTCCTACACTTCGAAC 59.994 47.826 0.00 0.00 44.14 3.95
873 875 3.228453 AGTCCAAGTCCTACACTTCGAA 58.772 45.455 0.00 0.00 44.14 3.71
874 876 2.818432 GAGTCCAAGTCCTACACTTCGA 59.182 50.000 0.00 0.00 44.14 3.71
875 877 2.094649 GGAGTCCAAGTCCTACACTTCG 60.095 54.545 3.60 0.00 44.14 3.79
876 878 2.897969 TGGAGTCCAAGTCCTACACTTC 59.102 50.000 10.20 0.00 44.14 3.01
878 880 2.696526 TGGAGTCCAAGTCCTACACT 57.303 50.000 10.20 0.00 38.55 3.55
879 881 3.400255 GTTTGGAGTCCAAGTCCTACAC 58.600 50.000 23.40 13.78 44.84 2.90
880 882 2.370849 GGTTTGGAGTCCAAGTCCTACA 59.629 50.000 27.10 11.88 44.84 2.74
881 883 2.370849 TGGTTTGGAGTCCAAGTCCTAC 59.629 50.000 30.67 23.38 44.84 3.18
882 884 2.696775 TGGTTTGGAGTCCAAGTCCTA 58.303 47.619 30.67 21.31 44.84 2.94
883 885 1.518367 TGGTTTGGAGTCCAAGTCCT 58.482 50.000 30.67 0.00 44.84 3.85
884 886 2.586648 ATGGTTTGGAGTCCAAGTCC 57.413 50.000 27.41 27.41 44.84 3.85
885 887 5.010282 ACATAATGGTTTGGAGTCCAAGTC 58.990 41.667 23.40 19.23 44.84 3.01
886 888 4.998051 ACATAATGGTTTGGAGTCCAAGT 58.002 39.130 23.40 13.09 44.84 3.16
887 889 5.713025 CAACATAATGGTTTGGAGTCCAAG 58.287 41.667 23.40 12.47 44.84 3.61
888 890 4.021544 GCAACATAATGGTTTGGAGTCCAA 60.022 41.667 21.05 21.05 42.29 3.53
889 891 3.509575 GCAACATAATGGTTTGGAGTCCA 59.490 43.478 8.12 8.12 38.14 4.02
890 892 3.763897 AGCAACATAATGGTTTGGAGTCC 59.236 43.478 0.73 0.73 0.00 3.85
891 893 5.447279 CGTAGCAACATAATGGTTTGGAGTC 60.447 44.000 0.00 0.00 32.43 3.36
892 894 4.394920 CGTAGCAACATAATGGTTTGGAGT 59.605 41.667 0.00 0.00 32.43 3.85
893 895 4.908736 CGTAGCAACATAATGGTTTGGAG 58.091 43.478 0.00 0.00 32.43 3.86
894 896 4.955925 CGTAGCAACATAATGGTTTGGA 57.044 40.909 0.00 0.00 32.43 3.53
911 913 1.289109 CGTGTTCCCAACCAGCGTAG 61.289 60.000 0.00 0.00 0.00 3.51
912 914 1.301087 CGTGTTCCCAACCAGCGTA 60.301 57.895 0.00 0.00 0.00 4.42
913 915 2.590575 CGTGTTCCCAACCAGCGT 60.591 61.111 0.00 0.00 0.00 5.07
914 916 2.590575 ACGTGTTCCCAACCAGCG 60.591 61.111 0.00 0.00 0.00 5.18
915 917 2.258726 GGACGTGTTCCCAACCAGC 61.259 63.158 0.00 0.00 38.70 4.85
916 918 1.959226 CGGACGTGTTCCCAACCAG 60.959 63.158 0.00 0.00 42.27 4.00
917 919 1.760479 ATCGGACGTGTTCCCAACCA 61.760 55.000 0.00 0.00 42.27 3.67
918 920 1.004200 ATCGGACGTGTTCCCAACC 60.004 57.895 0.00 0.00 42.27 3.77
919 921 1.017701 GGATCGGACGTGTTCCCAAC 61.018 60.000 0.00 0.00 42.27 3.77
920 922 1.294138 GGATCGGACGTGTTCCCAA 59.706 57.895 0.00 0.00 42.27 4.12
921 923 2.975536 GGATCGGACGTGTTCCCA 59.024 61.111 0.00 0.00 42.27 4.37
922 924 2.202703 CGGATCGGACGTGTTCCC 60.203 66.667 0.00 0.00 42.27 3.97
923 925 2.884207 GCGGATCGGACGTGTTCC 60.884 66.667 4.16 0.00 41.75 3.62
924 926 3.245315 CGCGGATCGGACGTGTTC 61.245 66.667 4.16 0.00 37.10 3.18
927 929 4.246206 TAGCGCGGATCGGACGTG 62.246 66.667 8.83 1.73 44.01 4.49
928 930 3.950254 CTAGCGCGGATCGGACGT 61.950 66.667 8.83 0.00 38.94 4.34
935 937 2.022195 TGTCTACTTTCTAGCGCGGAT 58.978 47.619 8.83 0.00 0.00 4.18
941 943 2.924290 CGCTGGTTGTCTACTTTCTAGC 59.076 50.000 0.00 0.00 0.00 3.42
945 947 0.796927 GGCGCTGGTTGTCTACTTTC 59.203 55.000 7.64 0.00 0.00 2.62
947 949 1.374252 CGGCGCTGGTTGTCTACTT 60.374 57.895 8.83 0.00 0.00 2.24
950 952 4.752879 GGCGGCGCTGGTTGTCTA 62.753 66.667 32.30 0.00 0.00 2.59
1054 1058 1.228124 CTTTGACCTGCCCCACGAA 60.228 57.895 0.00 0.00 0.00 3.85
1076 1080 2.798689 CCAGATCGGACGCGAAGA 59.201 61.111 15.93 9.45 36.56 2.87
1268 1281 2.261586 CGATCCTCCTCGCGGATGA 61.262 63.158 6.13 1.74 41.24 2.92
1269 1282 2.256764 CGATCCTCCTCGCGGATG 59.743 66.667 6.13 0.00 41.24 3.51
1270 1283 2.203365 ACGATCCTCCTCGCGGAT 60.203 61.111 6.13 0.00 43.77 4.18
1429 1454 4.475135 GAGCTTGACCTCCGCCCC 62.475 72.222 0.00 0.00 0.00 5.80
1452 1477 3.126831 GGCCTTGTCGTAGATCTGATTG 58.873 50.000 5.18 0.00 40.67 2.67
1458 1483 1.067582 CCGGGCCTTGTCGTAGATC 59.932 63.158 0.84 0.00 40.67 2.75
1557 1582 2.203938 TTCTTGGGGAGAGGGCGT 60.204 61.111 0.00 0.00 35.37 5.68
1659 1696 1.901464 GCGGGGTTTCTTCTTGCCA 60.901 57.895 0.00 0.00 0.00 4.92
1686 1723 4.072088 CGGTTGGTCGTCTTGCGC 62.072 66.667 0.00 0.00 41.07 6.09
1716 1753 4.974989 GGGGCGTCGACGGTTGTT 62.975 66.667 36.13 0.00 40.23 2.83
1839 1876 0.607489 TCTCTGGCTTTGGCTTGAGC 60.607 55.000 0.00 0.00 37.52 4.26
1854 1927 1.825474 TCTTCCGGCGATTTCTTCTCT 59.175 47.619 9.30 0.00 0.00 3.10
1856 1929 1.134670 CCTCTTCCGGCGATTTCTTCT 60.135 52.381 9.30 0.00 0.00 2.85
1861 1934 0.323629 TTGACCTCTTCCGGCGATTT 59.676 50.000 9.30 0.00 0.00 2.17
1864 1937 2.970639 CTTGACCTCTTCCGGCGA 59.029 61.111 9.30 0.00 0.00 5.54
1914 1988 0.099082 GGTAGAGCTCCTCGAACGTG 59.901 60.000 10.93 0.00 35.36 4.49
1941 2015 2.203788 AGAACCTCCCGGCACTCA 60.204 61.111 0.00 0.00 0.00 3.41
1961 2035 1.065928 CTGTCGCCGTACATCTCCC 59.934 63.158 0.00 0.00 0.00 4.30
2036 2110 3.567797 GCCTGCGCTTGATCGTCC 61.568 66.667 9.73 0.00 0.00 4.79
2056 2130 2.511145 CGCCTGCTCCAGCTTCTC 60.511 66.667 0.00 0.00 42.66 2.87
2072 2146 1.874019 CTCGTCATCTTCACGGCCG 60.874 63.158 26.86 26.86 37.85 6.13
2129 2203 0.924090 CCGATCTACAACAAGCTCGC 59.076 55.000 0.00 0.00 34.61 5.03
2170 2244 3.314388 CTGCACTTTCCGCTTCCGC 62.314 63.158 0.00 0.00 0.00 5.54
2171 2245 2.863153 CTGCACTTTCCGCTTCCG 59.137 61.111 0.00 0.00 0.00 4.30
2172 2246 2.563427 GCTGCACTTTCCGCTTCC 59.437 61.111 0.00 0.00 0.00 3.46
2173 2247 2.174349 CGCTGCACTTTCCGCTTC 59.826 61.111 0.00 0.00 0.00 3.86
2174 2248 3.357079 CCGCTGCACTTTCCGCTT 61.357 61.111 0.00 0.00 0.00 4.68
2193 2267 2.537560 CGGGCCATCACGATTGAGC 61.538 63.158 4.39 0.00 34.35 4.26
2281 2371 5.766150 TCAACAACAAGACCATCGATTTT 57.234 34.783 0.00 0.00 0.00 1.82
2291 2381 5.757850 ATGAACCTCTTCAACAACAAGAC 57.242 39.130 0.00 0.00 39.90 3.01
2335 2426 0.898320 ATTGTGAGACGGAGGGAGTG 59.102 55.000 0.00 0.00 0.00 3.51
2363 2454 1.676006 CGCCCCGATAGCTTGAAAAAT 59.324 47.619 0.00 0.00 0.00 1.82
2377 2468 2.187896 TTTTTACTCCCTCCGCCCCG 62.188 60.000 0.00 0.00 0.00 5.73
2379 2470 3.211865 CTTATTTTTACTCCCTCCGCCC 58.788 50.000 0.00 0.00 0.00 6.13
2382 2473 4.514401 AGCACTTATTTTTACTCCCTCCG 58.486 43.478 0.00 0.00 0.00 4.63
2383 2474 5.746284 AGAGCACTTATTTTTACTCCCTCC 58.254 41.667 0.00 0.00 0.00 4.30
2385 2476 9.755122 ATTTTAGAGCACTTATTTTTACTCCCT 57.245 29.630 0.00 0.00 0.00 4.20
2400 2492 6.655425 ACTCAAAAGGACCTATTTTAGAGCAC 59.345 38.462 0.00 0.00 33.23 4.40
2402 2494 6.316640 GGACTCAAAAGGACCTATTTTAGAGC 59.683 42.308 0.00 1.11 33.23 4.09
2406 2498 7.324388 TCAGGACTCAAAAGGACCTATTTTA 57.676 36.000 0.00 0.00 33.89 1.52
2412 2504 4.731313 AATTCAGGACTCAAAAGGACCT 57.269 40.909 0.00 0.00 34.99 3.85
2413 2505 5.791336 AAAATTCAGGACTCAAAAGGACC 57.209 39.130 0.00 0.00 0.00 4.46
3071 3557 7.065324 GGGTTTTCTTTGATTCTTTCGGTTTTT 59.935 33.333 0.00 0.00 0.00 1.94
3172 3665 9.823647 TCCTAGTTATTTTCATTTGTTTTTGCA 57.176 25.926 0.00 0.00 0.00 4.08
3190 3683 7.941431 TTGGTTTTCACTGTTTTCCTAGTTA 57.059 32.000 0.00 0.00 0.00 2.24
3193 3686 9.463443 CTTTATTGGTTTTCACTGTTTTCCTAG 57.537 33.333 0.00 0.00 0.00 3.02
3194 3687 9.191479 TCTTTATTGGTTTTCACTGTTTTCCTA 57.809 29.630 0.00 0.00 0.00 2.94
3195 3688 8.073467 TCTTTATTGGTTTTCACTGTTTTCCT 57.927 30.769 0.00 0.00 0.00 3.36
3197 3690 9.581099 TTCTCTTTATTGGTTTTCACTGTTTTC 57.419 29.630 0.00 0.00 0.00 2.29
3233 3729 9.793259 TCTTTCTTGGTTCAATGTTTCTATAGT 57.207 29.630 0.00 0.00 0.00 2.12
3237 3733 8.744652 TGTTTCTTTCTTGGTTCAATGTTTCTA 58.255 29.630 0.00 0.00 0.00 2.10
3238 3734 7.610865 TGTTTCTTTCTTGGTTCAATGTTTCT 58.389 30.769 0.00 0.00 0.00 2.52
3239 3735 7.826260 TGTTTCTTTCTTGGTTCAATGTTTC 57.174 32.000 0.00 0.00 0.00 2.78
3243 3739 8.502387 TGTTTTTGTTTCTTTCTTGGTTCAATG 58.498 29.630 0.00 0.00 0.00 2.82
3244 3740 8.614469 TGTTTTTGTTTCTTTCTTGGTTCAAT 57.386 26.923 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.