Multiple sequence alignment - TraesCS3B01G541200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G541200 chr3B 100.000 2984 0 0 1 2984 779567062 779570045 0.000000e+00 5511.0
1 TraesCS3B01G541200 chr3B 85.532 1486 144 26 821 2259 725118840 725117379 0.000000e+00 1487.0
2 TraesCS3B01G541200 chr3B 95.420 393 17 1 2584 2976 725116988 725116597 2.530000e-175 625.0
3 TraesCS3B01G541200 chr3B 76.151 847 148 27 1371 2188 778552245 778551424 2.160000e-106 396.0
4 TraesCS3B01G541200 chr3B 76.278 763 127 29 1334 2074 778490659 778489929 1.020000e-94 357.0
5 TraesCS3B01G541200 chr3B 86.103 331 40 2 982 1312 779510247 779510571 4.730000e-93 351.0
6 TraesCS3B01G541200 chr3B 93.860 228 12 2 2311 2537 725117387 725117161 2.850000e-90 342.0
7 TraesCS3B01G541200 chr3B 86.508 252 31 2 60 308 725120288 725120037 1.050000e-69 274.0
8 TraesCS3B01G541200 chr3B 85.217 230 34 0 1085 1314 778490971 778490742 1.380000e-58 237.0
9 TraesCS3B01G541200 chr3B 92.857 42 3 0 2081 2122 778489904 778489863 8.930000e-06 62.1
10 TraesCS3B01G541200 chr3D 88.412 1769 119 35 568 2284 581989927 581988193 0.000000e+00 2052.0
11 TraesCS3B01G541200 chr3D 88.718 390 31 4 2584 2971 581985864 581985486 5.830000e-127 464.0
12 TraesCS3B01G541200 chr3D 77.225 764 115 37 1334 2074 582107744 582107017 2.790000e-105 392.0
13 TraesCS3B01G541200 chr3D 88.253 332 33 6 987 1312 582108157 582107826 2.790000e-105 392.0
14 TraesCS3B01G541200 chr3D 76.146 851 138 34 1371 2188 582622843 582623661 1.300000e-103 387.0
15 TraesCS3B01G541200 chr3D 77.330 719 121 27 1371 2079 582793116 582793802 1.300000e-103 387.0
16 TraesCS3B01G541200 chr3D 88.362 232 21 3 2307 2537 581986263 581986037 1.050000e-69 274.0
17 TraesCS3B01G541200 chr3D 88.106 227 27 0 1082 1308 582792755 582792981 1.360000e-68 270.0
18 TraesCS3B01G541200 chr3D 86.364 242 33 0 1073 1314 580368044 580368285 6.340000e-67 265.0
19 TraesCS3B01G541200 chr3D 83.700 227 37 0 1082 1308 582733813 582734039 6.480000e-52 215.0
20 TraesCS3B01G541200 chrUn 76.033 847 150 26 1371 2188 336938632 336939454 1.000000e-104 390.0
21 TraesCS3B01G541200 chrUn 76.763 723 121 30 1371 2079 41506020 41506709 7.860000e-96 361.0
22 TraesCS3B01G541200 chrUn 75.754 763 131 29 1334 2074 41525521 41526251 4.770000e-88 335.0
23 TraesCS3B01G541200 chrUn 75.923 623 103 22 1595 2188 240406485 240405881 2.930000e-70 276.0
24 TraesCS3B01G541200 chrUn 85.714 238 34 0 1071 1308 41525195 41525432 4.940000e-63 252.0
25 TraesCS3B01G541200 chrUn 78.571 112 17 5 2083 2188 41506731 41506841 1.920000e-07 67.6
26 TraesCS3B01G541200 chrUn 92.857 42 3 0 2081 2122 41526276 41526317 8.930000e-06 62.1
27 TraesCS3B01G541200 chr4B 89.143 175 18 1 397 570 105151718 105151892 1.800000e-52 217.0
28 TraesCS3B01G541200 chr7A 94.872 39 1 1 691 729 90478680 90478643 3.210000e-05 60.2
29 TraesCS3B01G541200 chr7B 89.130 46 3 2 691 736 693970554 693970597 4.160000e-04 56.5
30 TraesCS3B01G541200 chr2D 87.755 49 2 3 691 736 52958790 52958743 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G541200 chr3B 779567062 779570045 2983 False 5511.000000 5511 100.000000 1 2984 1 chr3B.!!$F2 2983
1 TraesCS3B01G541200 chr3B 725116597 725120288 3691 True 682.000000 1487 90.330000 60 2976 4 chr3B.!!$R2 2916
2 TraesCS3B01G541200 chr3B 778551424 778552245 821 True 396.000000 396 76.151000 1371 2188 1 chr3B.!!$R1 817
3 TraesCS3B01G541200 chr3B 778489863 778490971 1108 True 218.700000 357 84.784000 1085 2122 3 chr3B.!!$R3 1037
4 TraesCS3B01G541200 chr3D 581985486 581989927 4441 True 930.000000 2052 88.497333 568 2971 3 chr3D.!!$R1 2403
5 TraesCS3B01G541200 chr3D 582107017 582108157 1140 True 392.000000 392 82.739000 987 2074 2 chr3D.!!$R2 1087
6 TraesCS3B01G541200 chr3D 582622843 582623661 818 False 387.000000 387 76.146000 1371 2188 1 chr3D.!!$F2 817
7 TraesCS3B01G541200 chr3D 582792755 582793802 1047 False 328.500000 387 82.718000 1082 2079 2 chr3D.!!$F4 997
8 TraesCS3B01G541200 chrUn 336938632 336939454 822 False 390.000000 390 76.033000 1371 2188 1 chrUn.!!$F1 817
9 TraesCS3B01G541200 chrUn 240405881 240406485 604 True 276.000000 276 75.923000 1595 2188 1 chrUn.!!$R1 593
10 TraesCS3B01G541200 chrUn 41525195 41526317 1122 False 216.366667 335 84.775000 1071 2122 3 chrUn.!!$F3 1051
11 TraesCS3B01G541200 chrUn 41506020 41506841 821 False 214.300000 361 77.667000 1371 2188 2 chrUn.!!$F2 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1951 0.107361 AGCATTTACCGGGCACTACC 60.107 55.0 6.32 0.0 37.93 3.18 F
1781 2950 0.687354 ATTGTCGAGGTGCAGTTCCT 59.313 50.0 0.00 0.0 38.09 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 3094 0.117340 AGTACAAGCAGTCCCTCCCT 59.883 55.000 0.0 0.0 0.0 4.20 R
2796 6055 2.294233 GCAATGCAGACCAAGAAGACAA 59.706 45.455 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.582648 AAATGAATAAAGGGTGTAAAGTACTGT 57.417 29.630 0.00 0.00 0.00 3.55
32 33 9.582648 AATGAATAAAGGGTGTAAAGTACTGTT 57.417 29.630 0.00 0.00 0.00 3.16
33 34 8.983702 TGAATAAAGGGTGTAAAGTACTGTTT 57.016 30.769 0.00 0.00 0.00 2.83
34 35 8.842280 TGAATAAAGGGTGTAAAGTACTGTTTG 58.158 33.333 0.00 0.00 0.00 2.93
35 36 5.509716 AAAGGGTGTAAAGTACTGTTTGC 57.490 39.130 0.00 0.00 0.00 3.68
36 37 3.483421 AGGGTGTAAAGTACTGTTTGCC 58.517 45.455 0.00 0.00 0.00 4.52
37 38 3.117813 AGGGTGTAAAGTACTGTTTGCCA 60.118 43.478 0.00 0.00 0.00 4.92
38 39 3.824443 GGGTGTAAAGTACTGTTTGCCAT 59.176 43.478 0.00 0.00 0.00 4.40
39 40 4.279922 GGGTGTAAAGTACTGTTTGCCATT 59.720 41.667 0.00 0.00 0.00 3.16
40 41 5.221362 GGGTGTAAAGTACTGTTTGCCATTT 60.221 40.000 0.00 0.00 0.00 2.32
41 42 5.689961 GGTGTAAAGTACTGTTTGCCATTTG 59.310 40.000 0.00 0.00 0.00 2.32
42 43 6.270064 GTGTAAAGTACTGTTTGCCATTTGT 58.730 36.000 0.00 0.00 0.00 2.83
43 44 6.754675 GTGTAAAGTACTGTTTGCCATTTGTT 59.245 34.615 0.00 0.00 0.00 2.83
44 45 6.975772 TGTAAAGTACTGTTTGCCATTTGTTC 59.024 34.615 0.00 0.00 0.00 3.18
45 46 4.584327 AGTACTGTTTGCCATTTGTTCC 57.416 40.909 0.00 0.00 0.00 3.62
46 47 3.957497 AGTACTGTTTGCCATTTGTTCCA 59.043 39.130 0.00 0.00 0.00 3.53
47 48 3.902881 ACTGTTTGCCATTTGTTCCAA 57.097 38.095 0.00 0.00 0.00 3.53
48 49 3.795877 ACTGTTTGCCATTTGTTCCAAG 58.204 40.909 0.00 0.00 0.00 3.61
49 50 3.450457 ACTGTTTGCCATTTGTTCCAAGA 59.550 39.130 0.00 0.00 0.00 3.02
50 51 4.101430 ACTGTTTGCCATTTGTTCCAAGAT 59.899 37.500 0.00 0.00 0.00 2.40
51 52 4.378774 TGTTTGCCATTTGTTCCAAGATG 58.621 39.130 0.00 0.00 0.00 2.90
52 53 4.141756 TGTTTGCCATTTGTTCCAAGATGT 60.142 37.500 0.00 0.00 0.00 3.06
53 54 3.663995 TGCCATTTGTTCCAAGATGTG 57.336 42.857 0.00 0.00 0.00 3.21
54 55 2.288948 TGCCATTTGTTCCAAGATGTGC 60.289 45.455 0.00 0.00 0.00 4.57
55 56 2.288948 GCCATTTGTTCCAAGATGTGCA 60.289 45.455 0.00 0.00 0.00 4.57
56 57 3.803021 GCCATTTGTTCCAAGATGTGCAA 60.803 43.478 0.00 0.00 0.00 4.08
57 58 3.742369 CCATTTGTTCCAAGATGTGCAAC 59.258 43.478 0.00 0.00 37.35 4.17
58 59 3.451141 TTTGTTCCAAGATGTGCAACC 57.549 42.857 0.00 0.00 34.36 3.77
67 68 2.665165 AGATGTGCAACCAAAGACCAA 58.335 42.857 0.00 0.00 34.36 3.67
69 70 2.957491 TGTGCAACCAAAGACCAAAG 57.043 45.000 0.00 0.00 34.36 2.77
75 76 2.695147 CAACCAAAGACCAAAGGAAGCT 59.305 45.455 0.00 0.00 0.00 3.74
86 87 4.044698 ACCAAAGGAAGCTAGGAAGGAATT 59.955 41.667 0.00 0.00 0.00 2.17
98 99 5.945144 AGGAAGGAATTGATGAATTTGGG 57.055 39.130 0.00 0.00 31.58 4.12
103 104 4.897670 AGGAATTGATGAATTTGGGCCTAG 59.102 41.667 4.53 0.00 31.58 3.02
106 107 6.127083 GGAATTGATGAATTTGGGCCTAGAAA 60.127 38.462 4.53 0.00 31.58 2.52
107 108 6.872585 ATTGATGAATTTGGGCCTAGAAAA 57.127 33.333 4.53 0.00 0.00 2.29
113 117 5.243730 TGAATTTGGGCCTAGAAAAGAGTTG 59.756 40.000 4.53 0.00 0.00 3.16
119 123 5.013704 TGGGCCTAGAAAAGAGTTGATACAA 59.986 40.000 4.53 0.00 0.00 2.41
120 124 5.354513 GGGCCTAGAAAAGAGTTGATACAAC 59.645 44.000 0.84 6.53 0.00 3.32
139 143 8.908786 ATACAACTTATAATGGTGATGTCAGG 57.091 34.615 6.88 0.00 0.00 3.86
146 150 0.543277 TGGTGATGTCAGGGAGATGC 59.457 55.000 0.00 0.00 0.00 3.91
195 199 6.884832 TGAAAAGTACTGGTATGTAGGATGG 58.115 40.000 0.00 0.00 0.00 3.51
196 200 4.957684 AAGTACTGGTATGTAGGATGGC 57.042 45.455 0.00 0.00 0.00 4.40
204 208 3.891366 GGTATGTAGGATGGCAGCATTTT 59.109 43.478 4.64 0.00 0.00 1.82
209 213 5.904941 TGTAGGATGGCAGCATTTTAAATG 58.095 37.500 12.84 12.84 0.00 2.32
212 216 5.422145 AGGATGGCAGCATTTTAAATGAAC 58.578 37.500 20.37 8.71 0.00 3.18
236 240 6.995686 ACTAGTCATGTACAACACCATGAAAA 59.004 34.615 0.00 0.00 46.46 2.29
238 242 7.288810 AGTCATGTACAACACCATGAAAAAT 57.711 32.000 0.00 0.00 46.46 1.82
266 270 8.006298 ACTGAAATAACTTTGATCAACCAACA 57.994 30.769 7.89 0.00 0.00 3.33
270 274 8.871686 AAATAACTTTGATCAACCAACAGTTC 57.128 30.769 20.39 0.00 36.18 3.01
278 282 5.420421 TGATCAACCAACAGTTCTTTTTCCA 59.580 36.000 0.00 0.00 36.18 3.53
287 291 6.530019 ACAGTTCTTTTTCCAGTGAACAAT 57.470 33.333 0.00 0.00 40.62 2.71
296 300 9.191995 CTTTTTCCAGTGAACAATGTTATTACC 57.808 33.333 0.00 0.00 0.00 2.85
302 343 8.241367 CCAGTGAACAATGTTATTACCCTAAAC 58.759 37.037 0.00 0.00 0.00 2.01
327 368 8.922676 ACAAAGTGAACAATCTATAACACTACG 58.077 33.333 0.00 0.00 37.57 3.51
328 369 9.135843 CAAAGTGAACAATCTATAACACTACGA 57.864 33.333 0.00 0.00 37.57 3.43
329 370 8.684973 AAGTGAACAATCTATAACACTACGAC 57.315 34.615 0.00 0.00 37.57 4.34
330 371 8.053026 AGTGAACAATCTATAACACTACGACT 57.947 34.615 0.00 0.00 36.94 4.18
331 372 8.521176 AGTGAACAATCTATAACACTACGACTT 58.479 33.333 0.00 0.00 36.94 3.01
332 373 9.136952 GTGAACAATCTATAACACTACGACTTT 57.863 33.333 0.00 0.00 0.00 2.66
333 374 9.701098 TGAACAATCTATAACACTACGACTTTT 57.299 29.630 0.00 0.00 0.00 2.27
334 375 9.953825 GAACAATCTATAACACTACGACTTTTG 57.046 33.333 0.00 0.00 0.00 2.44
335 376 8.475331 ACAATCTATAACACTACGACTTTTGG 57.525 34.615 0.00 0.00 0.00 3.28
336 377 8.308931 ACAATCTATAACACTACGACTTTTGGA 58.691 33.333 0.00 0.00 0.00 3.53
337 378 9.314321 CAATCTATAACACTACGACTTTTGGAT 57.686 33.333 0.00 0.00 0.00 3.41
338 379 9.886132 AATCTATAACACTACGACTTTTGGATT 57.114 29.630 0.00 0.00 0.00 3.01
339 380 8.697846 TCTATAACACTACGACTTTTGGATTG 57.302 34.615 0.00 0.00 0.00 2.67
340 381 6.737254 ATAACACTACGACTTTTGGATTGG 57.263 37.500 0.00 0.00 0.00 3.16
341 382 4.345859 ACACTACGACTTTTGGATTGGA 57.654 40.909 0.00 0.00 0.00 3.53
342 383 4.315803 ACACTACGACTTTTGGATTGGAG 58.684 43.478 0.00 0.00 0.00 3.86
343 384 3.125316 CACTACGACTTTTGGATTGGAGC 59.875 47.826 0.00 0.00 0.00 4.70
344 385 1.534729 ACGACTTTTGGATTGGAGCC 58.465 50.000 0.00 0.00 0.00 4.70
345 386 0.811281 CGACTTTTGGATTGGAGCCC 59.189 55.000 0.00 0.00 0.00 5.19
346 387 1.886222 CGACTTTTGGATTGGAGCCCA 60.886 52.381 0.00 0.00 0.00 5.36
347 388 2.460669 GACTTTTGGATTGGAGCCCAT 58.539 47.619 0.00 0.00 31.53 4.00
348 389 2.167075 GACTTTTGGATTGGAGCCCATG 59.833 50.000 0.00 0.00 31.53 3.66
349 390 0.903942 TTTTGGATTGGAGCCCATGC 59.096 50.000 0.00 0.00 31.53 4.06
350 391 1.321805 TTTGGATTGGAGCCCATGCG 61.322 55.000 0.00 0.00 44.33 4.73
351 392 2.124151 GGATTGGAGCCCATGCGT 60.124 61.111 0.00 0.00 44.33 5.24
352 393 2.484062 GGATTGGAGCCCATGCGTG 61.484 63.158 0.00 0.00 44.33 5.34
353 394 3.129913 GATTGGAGCCCATGCGTGC 62.130 63.158 0.00 0.00 44.33 5.34
362 403 3.133464 CATGCGTGCCCGACCAAT 61.133 61.111 0.00 0.00 35.63 3.16
363 404 2.361104 ATGCGTGCCCGACCAATT 60.361 55.556 0.00 0.00 35.63 2.32
364 405 1.976474 ATGCGTGCCCGACCAATTT 60.976 52.632 0.00 0.00 35.63 1.82
365 406 1.531739 ATGCGTGCCCGACCAATTTT 61.532 50.000 0.00 0.00 35.63 1.82
366 407 1.006688 GCGTGCCCGACCAATTTTT 60.007 52.632 0.00 0.00 35.63 1.94
383 424 0.396060 TTTTTGCATTGACCCAGGGC 59.604 50.000 4.91 0.00 0.00 5.19
384 425 0.762082 TTTTGCATTGACCCAGGGCA 60.762 50.000 4.91 1.25 0.00 5.36
385 426 0.544833 TTTGCATTGACCCAGGGCAT 60.545 50.000 4.91 0.00 34.03 4.40
386 427 0.971959 TTGCATTGACCCAGGGCATC 60.972 55.000 4.91 0.00 34.03 3.91
387 428 1.380246 GCATTGACCCAGGGCATCA 60.380 57.895 4.91 0.00 0.00 3.07
388 429 1.389609 GCATTGACCCAGGGCATCAG 61.390 60.000 4.91 0.00 0.00 2.90
389 430 1.076485 ATTGACCCAGGGCATCAGC 60.076 57.895 4.91 0.00 41.10 4.26
390 431 1.866483 ATTGACCCAGGGCATCAGCA 61.866 55.000 4.91 0.00 44.61 4.41
391 432 2.079088 TTGACCCAGGGCATCAGCAA 62.079 55.000 4.91 0.00 44.61 3.91
392 433 2.036256 ACCCAGGGCATCAGCAAC 59.964 61.111 4.91 0.00 44.61 4.17
393 434 2.757099 CCCAGGGCATCAGCAACC 60.757 66.667 0.00 0.00 44.61 3.77
394 435 3.136123 CCAGGGCATCAGCAACCG 61.136 66.667 0.00 0.00 44.61 4.44
395 436 3.818787 CAGGGCATCAGCAACCGC 61.819 66.667 0.00 0.00 44.61 5.68
405 446 4.390048 GCAACCGCTTGGAAGGTA 57.610 55.556 0.00 0.00 40.37 3.08
406 447 2.171635 GCAACCGCTTGGAAGGTAG 58.828 57.895 0.00 0.00 40.37 3.18
407 448 1.923227 GCAACCGCTTGGAAGGTAGC 61.923 60.000 0.00 0.00 40.37 3.58
408 449 1.002502 AACCGCTTGGAAGGTAGCC 60.003 57.895 0.00 0.00 40.37 3.93
409 450 1.774894 AACCGCTTGGAAGGTAGCCA 61.775 55.000 0.00 0.00 40.37 4.75
410 451 1.002624 CCGCTTGGAAGGTAGCCAA 60.003 57.895 0.00 0.00 42.81 4.52
411 452 0.608035 CCGCTTGGAAGGTAGCCAAA 60.608 55.000 0.00 0.00 44.23 3.28
412 453 1.463674 CGCTTGGAAGGTAGCCAAAT 58.536 50.000 0.00 0.00 44.23 2.32
413 454 2.639065 CGCTTGGAAGGTAGCCAAATA 58.361 47.619 0.00 0.00 44.23 1.40
414 455 3.214328 CGCTTGGAAGGTAGCCAAATAT 58.786 45.455 0.00 0.00 44.23 1.28
415 456 3.632145 CGCTTGGAAGGTAGCCAAATATT 59.368 43.478 0.00 0.00 44.23 1.28
416 457 4.097892 CGCTTGGAAGGTAGCCAAATATTT 59.902 41.667 0.00 0.00 44.23 1.40
417 458 5.351458 GCTTGGAAGGTAGCCAAATATTTG 58.649 41.667 19.40 19.40 44.23 2.32
427 468 2.869233 CAAATATTTGGCACTCCCGG 57.131 50.000 18.72 0.00 35.87 5.73
428 469 1.408702 CAAATATTTGGCACTCCCGGG 59.591 52.381 16.85 16.85 35.87 5.73
429 470 0.755327 AATATTTGGCACTCCCGGGC 60.755 55.000 18.49 3.08 35.87 6.13
445 486 2.825836 GCCGACCCAGCCATTCAG 60.826 66.667 0.00 0.00 0.00 3.02
446 487 2.671070 CCGACCCAGCCATTCAGT 59.329 61.111 0.00 0.00 0.00 3.41
447 488 1.002134 CCGACCCAGCCATTCAGTT 60.002 57.895 0.00 0.00 0.00 3.16
448 489 1.026718 CCGACCCAGCCATTCAGTTC 61.027 60.000 0.00 0.00 0.00 3.01
449 490 0.321564 CGACCCAGCCATTCAGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
450 491 1.168714 GACCCAGCCATTCAGTTCAC 58.831 55.000 0.00 0.00 0.00 3.18
451 492 0.773644 ACCCAGCCATTCAGTTCACT 59.226 50.000 0.00 0.00 0.00 3.41
452 493 1.145738 ACCCAGCCATTCAGTTCACTT 59.854 47.619 0.00 0.00 0.00 3.16
453 494 2.242043 CCCAGCCATTCAGTTCACTTT 58.758 47.619 0.00 0.00 0.00 2.66
454 495 2.629617 CCCAGCCATTCAGTTCACTTTT 59.370 45.455 0.00 0.00 0.00 2.27
455 496 3.553508 CCCAGCCATTCAGTTCACTTTTG 60.554 47.826 0.00 0.00 0.00 2.44
456 497 3.054878 CAGCCATTCAGTTCACTTTTGC 58.945 45.455 0.00 0.00 0.00 3.68
457 498 2.961062 AGCCATTCAGTTCACTTTTGCT 59.039 40.909 0.00 0.00 0.00 3.91
458 499 3.385755 AGCCATTCAGTTCACTTTTGCTT 59.614 39.130 0.00 0.00 0.00 3.91
459 500 3.492011 GCCATTCAGTTCACTTTTGCTTG 59.508 43.478 0.00 0.00 0.00 4.01
460 501 4.053295 CCATTCAGTTCACTTTTGCTTGG 58.947 43.478 0.00 0.00 0.00 3.61
461 502 4.202141 CCATTCAGTTCACTTTTGCTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
462 503 5.350633 CATTCAGTTCACTTTTGCTTGGAA 58.649 37.500 0.00 0.00 0.00 3.53
463 504 5.596836 TTCAGTTCACTTTTGCTTGGAAT 57.403 34.783 0.00 0.00 0.00 3.01
464 505 5.596836 TCAGTTCACTTTTGCTTGGAATT 57.403 34.783 0.00 0.00 0.00 2.17
465 506 5.976458 TCAGTTCACTTTTGCTTGGAATTT 58.024 33.333 0.00 0.00 0.00 1.82
466 507 6.405538 TCAGTTCACTTTTGCTTGGAATTTT 58.594 32.000 0.00 0.00 0.00 1.82
467 508 7.551585 TCAGTTCACTTTTGCTTGGAATTTTA 58.448 30.769 0.00 0.00 0.00 1.52
468 509 7.491048 TCAGTTCACTTTTGCTTGGAATTTTAC 59.509 33.333 0.00 0.00 0.00 2.01
469 510 6.475402 AGTTCACTTTTGCTTGGAATTTTACG 59.525 34.615 0.00 0.00 0.00 3.18
470 511 4.742659 TCACTTTTGCTTGGAATTTTACGC 59.257 37.500 0.00 0.00 0.00 4.42
471 512 4.055360 ACTTTTGCTTGGAATTTTACGCC 58.945 39.130 0.00 0.00 0.00 5.68
472 513 3.735237 TTTGCTTGGAATTTTACGCCA 57.265 38.095 0.00 0.00 0.00 5.69
473 514 3.296322 TTGCTTGGAATTTTACGCCAG 57.704 42.857 0.00 0.00 32.47 4.85
474 515 1.067915 TGCTTGGAATTTTACGCCAGC 60.068 47.619 0.00 0.00 32.47 4.85
475 516 1.067915 GCTTGGAATTTTACGCCAGCA 60.068 47.619 0.00 0.00 32.47 4.41
476 517 2.867429 CTTGGAATTTTACGCCAGCAG 58.133 47.619 0.00 0.00 32.47 4.24
477 518 1.904287 TGGAATTTTACGCCAGCAGT 58.096 45.000 0.00 0.00 0.00 4.40
478 519 2.235016 TGGAATTTTACGCCAGCAGTT 58.765 42.857 0.00 0.00 0.00 3.16
479 520 2.030363 TGGAATTTTACGCCAGCAGTTG 60.030 45.455 0.00 0.00 0.00 3.16
514 555 2.504519 GGAAGCTCCGCCGGTTAT 59.495 61.111 1.63 0.00 0.00 1.89
515 556 1.153229 GGAAGCTCCGCCGGTTATT 60.153 57.895 1.63 0.00 0.00 1.40
516 557 0.746923 GGAAGCTCCGCCGGTTATTT 60.747 55.000 1.63 0.00 0.00 1.40
517 558 0.377203 GAAGCTCCGCCGGTTATTTG 59.623 55.000 1.63 0.00 0.00 2.32
518 559 1.029947 AAGCTCCGCCGGTTATTTGG 61.030 55.000 1.63 0.00 0.00 3.28
524 565 2.487892 CCGGTTATTTGGCACGCC 59.512 61.111 0.00 0.00 0.00 5.68
525 566 2.487892 CGGTTATTTGGCACGCCC 59.512 61.111 5.42 0.00 34.56 6.13
526 567 2.336478 CGGTTATTTGGCACGCCCA 61.336 57.895 5.42 0.00 43.51 5.36
527 568 1.662438 CGGTTATTTGGCACGCCCAT 61.662 55.000 5.42 0.28 44.89 4.00
528 569 0.179113 GGTTATTTGGCACGCCCATG 60.179 55.000 5.42 0.00 44.89 3.66
529 570 0.805711 GTTATTTGGCACGCCCATGC 60.806 55.000 5.42 0.00 44.89 4.06
545 586 3.062639 GCATTGGCAGGGCAAACT 58.937 55.556 12.42 0.00 40.72 2.66
546 587 1.372307 GCATTGGCAGGGCAAACTT 59.628 52.632 12.42 0.00 40.72 2.66
547 588 0.952010 GCATTGGCAGGGCAAACTTG 60.952 55.000 12.42 7.69 40.72 3.16
548 589 0.320946 CATTGGCAGGGCAAACTTGG 60.321 55.000 12.42 0.00 0.00 3.61
549 590 1.482748 ATTGGCAGGGCAAACTTGGG 61.483 55.000 12.42 0.00 0.00 4.12
550 591 4.007644 GGCAGGGCAAACTTGGGC 62.008 66.667 0.00 0.00 0.00 5.36
551 592 3.233231 GCAGGGCAAACTTGGGCA 61.233 61.111 0.00 0.00 0.00 5.36
552 593 3.053828 CAGGGCAAACTTGGGCAG 58.946 61.111 0.00 0.00 0.00 4.85
553 594 1.531365 CAGGGCAAACTTGGGCAGA 60.531 57.895 0.00 0.00 0.00 4.26
554 595 1.114722 CAGGGCAAACTTGGGCAGAA 61.115 55.000 0.00 0.00 0.00 3.02
555 596 0.178924 AGGGCAAACTTGGGCAGAAT 60.179 50.000 0.00 0.00 0.00 2.40
556 597 0.247460 GGGCAAACTTGGGCAGAATC 59.753 55.000 0.00 0.00 0.00 2.52
557 598 0.247460 GGCAAACTTGGGCAGAATCC 59.753 55.000 0.00 0.00 0.00 3.01
558 599 0.968405 GCAAACTTGGGCAGAATCCA 59.032 50.000 0.00 0.00 0.00 3.41
559 600 1.344114 GCAAACTTGGGCAGAATCCAA 59.656 47.619 0.00 0.00 41.50 3.53
560 601 2.224257 GCAAACTTGGGCAGAATCCAAA 60.224 45.455 0.00 0.00 42.91 3.28
561 602 3.557686 GCAAACTTGGGCAGAATCCAAAT 60.558 43.478 0.00 0.00 42.91 2.32
562 603 4.322650 GCAAACTTGGGCAGAATCCAAATA 60.323 41.667 0.00 0.00 42.91 1.40
563 604 5.413499 CAAACTTGGGCAGAATCCAAATAG 58.587 41.667 0.00 0.00 42.91 1.73
564 605 3.635591 ACTTGGGCAGAATCCAAATAGG 58.364 45.455 0.00 0.00 42.91 2.57
565 606 2.071778 TGGGCAGAATCCAAATAGGC 57.928 50.000 0.00 0.00 37.29 3.93
566 607 1.332195 GGGCAGAATCCAAATAGGCC 58.668 55.000 0.00 0.00 39.18 5.19
572 613 4.792068 CAGAATCCAAATAGGCCCTACAA 58.208 43.478 0.00 0.00 37.29 2.41
578 619 4.229582 TCCAAATAGGCCCTACAATTCAGT 59.770 41.667 0.00 0.00 37.29 3.41
589 1534 6.472887 CCCTACAATTCAGTAACAAGGAAGA 58.527 40.000 0.00 0.00 0.00 2.87
618 1563 9.494271 GGCATCTCTTTATACATGAGAATGTTA 57.506 33.333 0.00 0.00 38.76 2.41
644 1589 8.449686 AGTGGTTCACTATGTTGGCATAAACAT 61.450 37.037 13.89 13.89 43.46 2.71
672 1617 5.583854 TCAATACTCTTGAAGCATTGCTCTC 59.416 40.000 12.39 11.85 38.25 3.20
683 1628 2.940527 GCATTGCTCTCCTTCTTCTGCT 60.941 50.000 0.16 0.00 0.00 4.24
798 1746 5.993441 CCGACAGGGTAGTTTCTTTTTAGAA 59.007 40.000 0.00 0.00 0.00 2.10
828 1812 2.252976 TTGGCAGGGAATGTTTTTGC 57.747 45.000 0.00 0.00 0.00 3.68
855 1839 3.958147 TGAGATATCACCTCGCCAACTTA 59.042 43.478 5.32 0.00 33.51 2.24
856 1840 4.588951 TGAGATATCACCTCGCCAACTTAT 59.411 41.667 5.32 0.00 33.51 1.73
857 1841 5.070446 TGAGATATCACCTCGCCAACTTATT 59.930 40.000 5.32 0.00 33.51 1.40
858 1842 6.266786 TGAGATATCACCTCGCCAACTTATTA 59.733 38.462 5.32 0.00 33.51 0.98
947 1938 4.103311 CCTAAGCCTCTAACCCTAGCATTT 59.897 45.833 0.00 0.00 0.00 2.32
949 1940 4.691326 AGCCTCTAACCCTAGCATTTAC 57.309 45.455 0.00 0.00 0.00 2.01
951 1942 3.802675 GCCTCTAACCCTAGCATTTACCG 60.803 52.174 0.00 0.00 0.00 4.02
952 1943 3.244112 CCTCTAACCCTAGCATTTACCGG 60.244 52.174 0.00 0.00 0.00 5.28
953 1944 2.701951 TCTAACCCTAGCATTTACCGGG 59.298 50.000 6.32 0.00 40.79 5.73
955 1946 1.276140 ACCCTAGCATTTACCGGGCA 61.276 55.000 6.32 0.00 38.50 5.36
956 1947 0.818040 CCCTAGCATTTACCGGGCAC 60.818 60.000 6.32 0.00 0.00 5.01
957 1948 0.180406 CCTAGCATTTACCGGGCACT 59.820 55.000 6.32 0.00 0.00 4.40
958 1949 1.414919 CCTAGCATTTACCGGGCACTA 59.585 52.381 6.32 0.00 0.00 2.74
959 1950 2.480845 CTAGCATTTACCGGGCACTAC 58.519 52.381 6.32 0.00 0.00 2.73
960 1951 0.107361 AGCATTTACCGGGCACTACC 60.107 55.000 6.32 0.00 37.93 3.18
961 1952 0.393267 GCATTTACCGGGCACTACCA 60.393 55.000 6.32 0.00 42.05 3.25
962 1953 1.663695 CATTTACCGGGCACTACCAG 58.336 55.000 6.32 0.00 42.05 4.00
963 1954 0.107361 ATTTACCGGGCACTACCAGC 60.107 55.000 6.32 0.00 42.05 4.85
1102 2135 2.348888 CCGTACTTCCTGCCGGAGT 61.349 63.158 5.05 0.68 43.01 3.85
1230 2263 4.332543 TCCCAGGGTCCGCTCCTT 62.333 66.667 5.01 0.00 31.06 3.36
1321 2429 2.607750 TCCCCTGCACAGACCTCC 60.608 66.667 0.00 0.00 0.00 4.30
1324 2432 3.699894 CCTGCACAGACCTCCGCT 61.700 66.667 0.00 0.00 0.00 5.52
1441 2604 3.081409 CTGATCCCCCGGAACCGT 61.081 66.667 0.73 0.00 34.34 4.83
1443 2606 4.851179 GATCCCCCGGAACCGTGC 62.851 72.222 0.73 0.00 34.34 5.34
1498 2661 2.036098 TCACCTGCAGGCAATGGG 59.964 61.111 33.06 14.79 39.32 4.00
1535 2698 2.819595 CCACATTGGGGACGCTCG 60.820 66.667 0.00 0.00 32.67 5.03
1579 2742 3.245087 TGAAGGCCACCAGCTTTACAATA 60.245 43.478 5.01 0.00 41.60 1.90
1590 2753 6.037172 ACCAGCTTTACAATATGATGTTCGTC 59.963 38.462 0.00 0.00 34.75 4.20
1593 2756 7.637519 CAGCTTTACAATATGATGTTCGTCAAG 59.362 37.037 0.00 0.00 34.75 3.02
1620 2789 3.393800 CCTCTATGTGCTGATTTACCCG 58.606 50.000 0.00 0.00 0.00 5.28
1659 2828 2.731451 CGTCGAGCTTGACAAGAATTCA 59.269 45.455 29.31 0.00 38.84 2.57
1698 2867 4.299586 TGGAGATAAATTGAGTGTGCCA 57.700 40.909 0.00 0.00 0.00 4.92
1709 2878 4.085357 TGAGTGTGCCAGAAGTTAACAT 57.915 40.909 8.61 0.00 0.00 2.71
1712 2881 5.359576 TGAGTGTGCCAGAAGTTAACATTTT 59.640 36.000 8.61 0.00 0.00 1.82
1714 2883 6.273071 AGTGTGCCAGAAGTTAACATTTTTC 58.727 36.000 8.61 2.89 0.00 2.29
1716 2885 5.127845 TGTGCCAGAAGTTAACATTTTTCCA 59.872 36.000 8.61 0.00 0.00 3.53
1724 2893 6.994421 AGTTAACATTTTTCCAGGTCCAAT 57.006 33.333 8.61 0.00 0.00 3.16
1726 2895 3.683365 ACATTTTTCCAGGTCCAATGC 57.317 42.857 0.00 0.00 0.00 3.56
1774 2943 1.089920 ATTGCTCATTGTCGAGGTGC 58.910 50.000 0.00 0.00 33.36 5.01
1780 2949 0.798776 CATTGTCGAGGTGCAGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
1781 2950 0.687354 ATTGTCGAGGTGCAGTTCCT 59.313 50.000 0.00 0.00 38.09 3.36
1876 3049 5.050159 GGTTGCAGCTTGTTCTTTAATTTGG 60.050 40.000 0.00 0.00 0.00 3.28
1879 3052 7.225784 TGCAGCTTGTTCTTTAATTTGGATA 57.774 32.000 0.00 0.00 0.00 2.59
1954 3127 0.685097 TGTACTTCACTGGGTGCTCC 59.315 55.000 0.00 0.00 32.98 4.70
2126 3324 5.045359 TGCTCCCTAGTGACTAGTTACAGTA 60.045 44.000 18.91 9.22 32.62 2.74
2153 3356 7.962934 TTAGTTTGACATTTTCTGTTTGTCG 57.037 32.000 0.00 0.00 42.07 4.35
2288 5372 4.843728 AGTGTGTGTCATTATAAGGTGGG 58.156 43.478 0.00 0.00 0.00 4.61
2303 5387 1.409661 GGTGGGGTGTTCTTGAAGTGT 60.410 52.381 0.00 0.00 0.00 3.55
2498 5613 1.003839 GGTCGTGAGTCCAATGCCA 60.004 57.895 0.00 0.00 39.23 4.92
2514 5629 1.280066 GCCAATGCCATTGTTTAGCG 58.720 50.000 15.83 1.20 38.59 4.26
2520 5635 2.499197 TGCCATTGTTTAGCGAAGTCA 58.501 42.857 0.00 0.00 0.00 3.41
2553 5812 2.360350 CCGCTCATGCCAAGTGGT 60.360 61.111 4.66 0.00 39.17 4.16
2583 5842 4.789012 CAGTATGTTTGGAGCACCATTT 57.211 40.909 2.87 0.00 46.34 2.32
2584 5843 4.487948 CAGTATGTTTGGAGCACCATTTG 58.512 43.478 2.87 0.00 46.34 2.32
2585 5844 4.022068 CAGTATGTTTGGAGCACCATTTGT 60.022 41.667 2.87 0.00 46.34 2.83
2586 5845 4.588528 AGTATGTTTGGAGCACCATTTGTT 59.411 37.500 2.87 0.00 46.34 2.83
2587 5846 5.772672 AGTATGTTTGGAGCACCATTTGTTA 59.227 36.000 2.87 0.00 46.34 2.41
2637 5896 8.328758 TGTCCTGTTAAGATGAGGATTTATGTT 58.671 33.333 0.00 0.00 38.18 2.71
2638 5897 9.178758 GTCCTGTTAAGATGAGGATTTATGTTT 57.821 33.333 0.00 0.00 38.18 2.83
2639 5898 9.177608 TCCTGTTAAGATGAGGATTTATGTTTG 57.822 33.333 0.00 0.00 30.58 2.93
2645 5904 6.256053 AGATGAGGATTTATGTTTGTGGGTT 58.744 36.000 0.00 0.00 0.00 4.11
2646 5905 6.725834 AGATGAGGATTTATGTTTGTGGGTTT 59.274 34.615 0.00 0.00 0.00 3.27
2682 5941 2.678336 GCAGGGGAGATGTTTAGTTTCG 59.322 50.000 0.00 0.00 0.00 3.46
2714 5973 0.041576 GCGTTGTTTTGGGACTCGTC 60.042 55.000 0.00 0.00 0.00 4.20
2717 5976 1.667212 GTTGTTTTGGGACTCGTCGTT 59.333 47.619 0.00 0.00 0.00 3.85
2745 6004 6.094048 GTCAGGAATAATGCTTGCTTCAGTAA 59.906 38.462 0.00 0.00 0.00 2.24
2796 6055 0.469494 TCCACAGTGCTCACATGTGT 59.531 50.000 24.63 2.71 38.05 3.72
2946 6208 0.605589 GGGCCGTTCTAGTGTGCTTT 60.606 55.000 0.00 0.00 0.00 3.51
2976 6238 6.295249 TGTGGTCTGTAACATGATGAAGAAA 58.705 36.000 0.00 0.00 0.00 2.52
2977 6239 6.770303 TGTGGTCTGTAACATGATGAAGAAAA 59.230 34.615 0.00 0.00 0.00 2.29
2978 6240 7.284261 TGTGGTCTGTAACATGATGAAGAAAAA 59.716 33.333 0.00 0.00 0.00 1.94
2979 6241 7.805071 GTGGTCTGTAACATGATGAAGAAAAAG 59.195 37.037 0.00 0.00 0.00 2.27
2980 6242 7.719193 TGGTCTGTAACATGATGAAGAAAAAGA 59.281 33.333 0.00 0.00 0.00 2.52
2981 6243 8.233190 GGTCTGTAACATGATGAAGAAAAAGAG 58.767 37.037 0.00 0.00 0.00 2.85
2982 6244 8.993121 GTCTGTAACATGATGAAGAAAAAGAGA 58.007 33.333 0.00 0.00 0.00 3.10
2983 6245 9.559732 TCTGTAACATGATGAAGAAAAAGAGAA 57.440 29.630 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.582648 ACAGTACTTTACACCCTTTATTCATTT 57.417 29.630 0.00 0.00 0.00 2.32
6 7 9.582648 AACAGTACTTTACACCCTTTATTCATT 57.417 29.630 0.00 0.00 0.00 2.57
7 8 9.582648 AAACAGTACTTTACACCCTTTATTCAT 57.417 29.630 0.00 0.00 0.00 2.57
8 9 8.842280 CAAACAGTACTTTACACCCTTTATTCA 58.158 33.333 0.00 0.00 0.00 2.57
9 10 7.806487 GCAAACAGTACTTTACACCCTTTATTC 59.194 37.037 0.00 0.00 0.00 1.75
10 11 7.255695 GGCAAACAGTACTTTACACCCTTTATT 60.256 37.037 0.00 0.00 0.00 1.40
11 12 6.208007 GGCAAACAGTACTTTACACCCTTTAT 59.792 38.462 0.00 0.00 0.00 1.40
12 13 5.532032 GGCAAACAGTACTTTACACCCTTTA 59.468 40.000 0.00 0.00 0.00 1.85
13 14 4.340097 GGCAAACAGTACTTTACACCCTTT 59.660 41.667 0.00 0.00 0.00 3.11
14 15 3.887110 GGCAAACAGTACTTTACACCCTT 59.113 43.478 0.00 0.00 0.00 3.95
15 16 3.117813 TGGCAAACAGTACTTTACACCCT 60.118 43.478 0.00 0.00 0.00 4.34
16 17 3.215975 TGGCAAACAGTACTTTACACCC 58.784 45.455 0.00 0.00 0.00 4.61
17 18 5.447624 AATGGCAAACAGTACTTTACACC 57.552 39.130 0.00 0.00 0.00 4.16
18 19 6.270064 ACAAATGGCAAACAGTACTTTACAC 58.730 36.000 0.00 0.00 0.00 2.90
19 20 6.458232 ACAAATGGCAAACAGTACTTTACA 57.542 33.333 0.00 0.00 0.00 2.41
20 21 6.419710 GGAACAAATGGCAAACAGTACTTTAC 59.580 38.462 0.00 0.00 0.00 2.01
21 22 6.096987 TGGAACAAATGGCAAACAGTACTTTA 59.903 34.615 0.00 0.00 31.92 1.85
22 23 5.105146 TGGAACAAATGGCAAACAGTACTTT 60.105 36.000 0.00 0.00 31.92 2.66
23 24 4.404073 TGGAACAAATGGCAAACAGTACTT 59.596 37.500 0.00 0.00 31.92 2.24
24 25 3.957497 TGGAACAAATGGCAAACAGTACT 59.043 39.130 0.00 0.00 31.92 2.73
25 26 4.314740 TGGAACAAATGGCAAACAGTAC 57.685 40.909 0.00 0.00 31.92 2.73
42 43 3.068024 GTCTTTGGTTGCACATCTTGGAA 59.932 43.478 0.00 0.00 32.15 3.53
43 44 2.622942 GTCTTTGGTTGCACATCTTGGA 59.377 45.455 0.00 0.00 0.00 3.53
44 45 2.288395 GGTCTTTGGTTGCACATCTTGG 60.288 50.000 0.00 0.00 0.00 3.61
45 46 2.361757 TGGTCTTTGGTTGCACATCTTG 59.638 45.455 0.00 0.00 0.00 3.02
46 47 2.665165 TGGTCTTTGGTTGCACATCTT 58.335 42.857 0.00 0.00 0.00 2.40
47 48 2.363306 TGGTCTTTGGTTGCACATCT 57.637 45.000 0.00 0.00 0.00 2.90
48 49 3.383761 CTTTGGTCTTTGGTTGCACATC 58.616 45.455 0.00 0.00 0.00 3.06
49 50 2.102925 CCTTTGGTCTTTGGTTGCACAT 59.897 45.455 0.00 0.00 0.00 3.21
50 51 1.480137 CCTTTGGTCTTTGGTTGCACA 59.520 47.619 0.00 0.00 0.00 4.57
51 52 1.754226 TCCTTTGGTCTTTGGTTGCAC 59.246 47.619 0.00 0.00 0.00 4.57
52 53 2.151502 TCCTTTGGTCTTTGGTTGCA 57.848 45.000 0.00 0.00 0.00 4.08
53 54 2.803133 GCTTCCTTTGGTCTTTGGTTGC 60.803 50.000 0.00 0.00 0.00 4.17
54 55 2.695147 AGCTTCCTTTGGTCTTTGGTTG 59.305 45.455 0.00 0.00 0.00 3.77
55 56 3.032265 AGCTTCCTTTGGTCTTTGGTT 57.968 42.857 0.00 0.00 0.00 3.67
56 57 2.755952 AGCTTCCTTTGGTCTTTGGT 57.244 45.000 0.00 0.00 0.00 3.67
57 58 3.084786 CCTAGCTTCCTTTGGTCTTTGG 58.915 50.000 0.00 0.00 0.00 3.28
58 59 4.021102 TCCTAGCTTCCTTTGGTCTTTG 57.979 45.455 0.00 0.00 0.00 2.77
67 68 5.192522 TCATCAATTCCTTCCTAGCTTCCTT 59.807 40.000 0.00 0.00 0.00 3.36
69 70 5.041191 TCATCAATTCCTTCCTAGCTTCC 57.959 43.478 0.00 0.00 0.00 3.46
75 76 5.363580 GCCCAAATTCATCAATTCCTTCCTA 59.636 40.000 0.00 0.00 30.37 2.94
86 87 5.579047 TCTTTTCTAGGCCCAAATTCATCA 58.421 37.500 0.00 0.00 0.00 3.07
98 99 7.674471 AAGTTGTATCAACTCTTTTCTAGGC 57.326 36.000 14.16 0.00 0.00 3.93
113 117 8.993121 CCTGACATCACCATTATAAGTTGTATC 58.007 37.037 0.00 0.00 0.00 2.24
119 123 5.905331 TCTCCCTGACATCACCATTATAAGT 59.095 40.000 0.00 0.00 0.00 2.24
120 124 6.425210 TCTCCCTGACATCACCATTATAAG 57.575 41.667 0.00 0.00 0.00 1.73
184 188 7.505248 TCATTTAAAATGCTGCCATCCTACATA 59.495 33.333 0.00 0.00 0.00 2.29
186 190 5.655974 TCATTTAAAATGCTGCCATCCTACA 59.344 36.000 0.00 0.00 0.00 2.74
195 199 7.756722 ACATGACTAGTTCATTTAAAATGCTGC 59.243 33.333 0.00 0.00 42.87 5.25
204 208 8.151596 TGGTGTTGTACATGACTAGTTCATTTA 58.848 33.333 0.00 0.00 42.87 1.40
209 213 6.163476 TCATGGTGTTGTACATGACTAGTTC 58.837 40.000 0.00 0.00 46.05 3.01
219 223 8.687242 TCAGTTTATTTTTCATGGTGTTGTACA 58.313 29.630 0.00 0.00 0.00 2.90
254 258 5.420421 TGGAAAAAGAACTGTTGGTTGATCA 59.580 36.000 0.00 0.00 38.41 2.92
266 270 6.530019 ACATTGTTCACTGGAAAAAGAACT 57.470 33.333 0.00 0.00 40.62 3.01
270 274 9.191995 GGTAATAACATTGTTCACTGGAAAAAG 57.808 33.333 5.07 0.00 33.84 2.27
278 282 8.927675 TGTTTAGGGTAATAACATTGTTCACT 57.072 30.769 5.07 0.72 0.00 3.41
287 291 8.749026 TGTTCACTTTGTTTAGGGTAATAACA 57.251 30.769 0.00 0.00 0.00 2.41
302 343 9.135843 TCGTAGTGTTATAGATTGTTCACTTTG 57.864 33.333 0.00 0.00 37.35 2.77
319 360 4.710324 TCCAATCCAAAAGTCGTAGTGTT 58.290 39.130 0.00 0.00 0.00 3.32
323 364 2.678336 GGCTCCAATCCAAAAGTCGTAG 59.322 50.000 0.00 0.00 0.00 3.51
324 365 2.617021 GGGCTCCAATCCAAAAGTCGTA 60.617 50.000 0.00 0.00 0.00 3.43
325 366 1.534729 GGCTCCAATCCAAAAGTCGT 58.465 50.000 0.00 0.00 0.00 4.34
326 367 0.811281 GGGCTCCAATCCAAAAGTCG 59.189 55.000 0.00 0.00 0.00 4.18
327 368 1.923356 TGGGCTCCAATCCAAAAGTC 58.077 50.000 0.00 0.00 0.00 3.01
328 369 2.181975 CATGGGCTCCAATCCAAAAGT 58.818 47.619 0.00 0.00 36.95 2.66
329 370 1.134610 GCATGGGCTCCAATCCAAAAG 60.135 52.381 0.00 0.00 36.95 2.27
330 371 0.903942 GCATGGGCTCCAATCCAAAA 59.096 50.000 0.00 0.00 36.95 2.44
331 372 1.321805 CGCATGGGCTCCAATCCAAA 61.322 55.000 0.00 0.00 36.95 3.28
332 373 1.753848 CGCATGGGCTCCAATCCAA 60.754 57.895 0.00 0.00 36.95 3.53
333 374 2.124193 CGCATGGGCTCCAATCCA 60.124 61.111 0.00 0.00 36.95 3.41
334 375 2.124151 ACGCATGGGCTCCAATCC 60.124 61.111 10.10 0.00 36.95 3.01
335 376 3.113745 CACGCATGGGCTCCAATC 58.886 61.111 10.10 0.00 36.95 2.67
336 377 3.142838 GCACGCATGGGCTCCAAT 61.143 61.111 10.10 0.00 36.95 3.16
345 386 2.211619 AAATTGGTCGGGCACGCATG 62.212 55.000 1.67 0.00 40.69 4.06
346 387 1.531739 AAAATTGGTCGGGCACGCAT 61.532 50.000 1.67 0.00 40.69 4.73
347 388 1.739338 AAAAATTGGTCGGGCACGCA 61.739 50.000 1.67 0.00 40.69 5.24
348 389 1.006688 AAAAATTGGTCGGGCACGC 60.007 52.632 1.67 0.00 40.69 5.34
364 405 0.396060 GCCCTGGGTCAATGCAAAAA 59.604 50.000 15.56 0.00 0.00 1.94
365 406 0.762082 TGCCCTGGGTCAATGCAAAA 60.762 50.000 15.56 0.00 0.00 2.44
366 407 0.544833 ATGCCCTGGGTCAATGCAAA 60.545 50.000 15.56 0.00 35.30 3.68
367 408 0.971959 GATGCCCTGGGTCAATGCAA 60.972 55.000 15.56 0.00 35.30 4.08
368 409 1.380246 GATGCCCTGGGTCAATGCA 60.380 57.895 15.56 4.97 36.23 3.96
369 410 1.380246 TGATGCCCTGGGTCAATGC 60.380 57.895 15.56 7.61 0.00 3.56
370 411 1.389609 GCTGATGCCCTGGGTCAATG 61.390 60.000 15.56 8.36 0.00 2.82
371 412 1.076485 GCTGATGCCCTGGGTCAAT 60.076 57.895 15.56 6.00 0.00 2.57
372 413 2.079088 TTGCTGATGCCCTGGGTCAA 62.079 55.000 15.56 6.59 38.71 3.18
373 414 2.537203 TTGCTGATGCCCTGGGTCA 61.537 57.895 15.56 13.19 38.71 4.02
374 415 2.048603 GTTGCTGATGCCCTGGGTC 61.049 63.158 15.56 5.43 38.71 4.46
375 416 2.036256 GTTGCTGATGCCCTGGGT 59.964 61.111 15.56 0.00 38.71 4.51
376 417 2.757099 GGTTGCTGATGCCCTGGG 60.757 66.667 8.86 8.86 38.71 4.45
377 418 3.136123 CGGTTGCTGATGCCCTGG 61.136 66.667 0.00 0.00 38.71 4.45
378 419 3.818787 GCGGTTGCTGATGCCCTG 61.819 66.667 0.00 0.00 38.71 4.45
388 429 1.923227 GCTACCTTCCAAGCGGTTGC 61.923 60.000 21.60 4.04 42.81 4.17
389 430 1.305930 GGCTACCTTCCAAGCGGTTG 61.306 60.000 20.18 20.18 39.71 3.77
390 431 1.002502 GGCTACCTTCCAAGCGGTT 60.003 57.895 0.00 0.00 39.71 4.44
391 432 1.774894 TTGGCTACCTTCCAAGCGGT 61.775 55.000 0.00 0.00 38.57 5.68
392 433 0.608035 TTTGGCTACCTTCCAAGCGG 60.608 55.000 0.00 0.00 43.67 5.52
393 434 1.463674 ATTTGGCTACCTTCCAAGCG 58.536 50.000 0.00 0.00 43.67 4.68
394 435 5.351458 CAAATATTTGGCTACCTTCCAAGC 58.649 41.667 18.72 0.00 43.67 4.01
408 449 1.408702 CCCGGGAGTGCCAAATATTTG 59.591 52.381 18.48 19.40 37.90 2.32
409 450 1.775385 CCCGGGAGTGCCAAATATTT 58.225 50.000 18.48 0.00 35.15 1.40
410 451 0.755327 GCCCGGGAGTGCCAAATATT 60.755 55.000 29.31 0.00 35.15 1.28
411 452 1.152756 GCCCGGGAGTGCCAAATAT 60.153 57.895 29.31 0.00 35.15 1.28
412 453 2.274104 GCCCGGGAGTGCCAAATA 59.726 61.111 29.31 0.00 35.15 1.40
428 469 2.825836 CTGAATGGCTGGGTCGGC 60.826 66.667 0.00 0.00 34.56 5.54
429 470 1.002134 AACTGAATGGCTGGGTCGG 60.002 57.895 0.00 0.00 0.00 4.79
430 471 0.321564 TGAACTGAATGGCTGGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
431 472 1.168714 GTGAACTGAATGGCTGGGTC 58.831 55.000 0.00 0.00 0.00 4.46
432 473 0.773644 AGTGAACTGAATGGCTGGGT 59.226 50.000 0.00 0.00 0.00 4.51
433 474 1.915141 AAGTGAACTGAATGGCTGGG 58.085 50.000 0.00 0.00 0.00 4.45
434 475 3.645884 CAAAAGTGAACTGAATGGCTGG 58.354 45.455 0.00 0.00 0.00 4.85
435 476 3.054878 GCAAAAGTGAACTGAATGGCTG 58.945 45.455 0.00 0.00 0.00 4.85
436 477 2.961062 AGCAAAAGTGAACTGAATGGCT 59.039 40.909 0.00 0.00 0.00 4.75
437 478 3.375782 AGCAAAAGTGAACTGAATGGC 57.624 42.857 0.00 0.00 0.00 4.40
438 479 4.053295 CCAAGCAAAAGTGAACTGAATGG 58.947 43.478 0.00 0.00 0.00 3.16
439 480 4.935702 TCCAAGCAAAAGTGAACTGAATG 58.064 39.130 0.00 0.00 0.00 2.67
440 481 5.596836 TTCCAAGCAAAAGTGAACTGAAT 57.403 34.783 0.00 0.00 0.00 2.57
441 482 5.596836 ATTCCAAGCAAAAGTGAACTGAA 57.403 34.783 0.00 0.00 0.00 3.02
442 483 5.596836 AATTCCAAGCAAAAGTGAACTGA 57.403 34.783 0.00 0.00 0.00 3.41
443 484 6.667007 AAAATTCCAAGCAAAAGTGAACTG 57.333 33.333 0.00 0.00 0.00 3.16
444 485 6.475402 CGTAAAATTCCAAGCAAAAGTGAACT 59.525 34.615 0.00 0.00 0.00 3.01
445 486 6.636443 CGTAAAATTCCAAGCAAAAGTGAAC 58.364 36.000 0.00 0.00 0.00 3.18
446 487 5.233263 GCGTAAAATTCCAAGCAAAAGTGAA 59.767 36.000 0.00 0.00 0.00 3.18
447 488 4.742659 GCGTAAAATTCCAAGCAAAAGTGA 59.257 37.500 0.00 0.00 0.00 3.41
448 489 4.084589 GGCGTAAAATTCCAAGCAAAAGTG 60.085 41.667 0.00 0.00 0.00 3.16
449 490 4.055360 GGCGTAAAATTCCAAGCAAAAGT 58.945 39.130 0.00 0.00 0.00 2.66
450 491 4.054671 TGGCGTAAAATTCCAAGCAAAAG 58.945 39.130 0.00 0.00 0.00 2.27
451 492 4.054671 CTGGCGTAAAATTCCAAGCAAAA 58.945 39.130 0.00 0.00 0.00 2.44
452 493 3.648009 CTGGCGTAAAATTCCAAGCAAA 58.352 40.909 0.00 0.00 0.00 3.68
453 494 2.609244 GCTGGCGTAAAATTCCAAGCAA 60.609 45.455 0.00 0.00 0.00 3.91
454 495 1.067915 GCTGGCGTAAAATTCCAAGCA 60.068 47.619 0.00 0.00 0.00 3.91
455 496 1.067915 TGCTGGCGTAAAATTCCAAGC 60.068 47.619 0.00 0.00 0.00 4.01
456 497 2.228822 ACTGCTGGCGTAAAATTCCAAG 59.771 45.455 0.00 0.00 0.00 3.61
457 498 2.235016 ACTGCTGGCGTAAAATTCCAA 58.765 42.857 0.00 0.00 0.00 3.53
458 499 1.904287 ACTGCTGGCGTAAAATTCCA 58.096 45.000 0.00 0.00 0.00 3.53
459 500 2.595386 CAACTGCTGGCGTAAAATTCC 58.405 47.619 0.00 0.00 0.00 3.01
460 501 2.595386 CCAACTGCTGGCGTAAAATTC 58.405 47.619 0.00 0.00 38.76 2.17
461 502 2.723124 CCAACTGCTGGCGTAAAATT 57.277 45.000 0.00 0.00 38.76 1.82
502 543 3.107447 GCCAAATAACCGGCGGAG 58.893 61.111 35.78 13.92 38.82 4.63
507 548 2.487892 GGCGTGCCAAATAACCGG 59.512 61.111 5.89 0.00 35.81 5.28
508 549 1.662438 ATGGGCGTGCCAAATAACCG 61.662 55.000 13.76 0.00 37.98 4.44
509 550 0.179113 CATGGGCGTGCCAAATAACC 60.179 55.000 13.76 0.00 37.98 2.85
510 551 0.805711 GCATGGGCGTGCCAAATAAC 60.806 55.000 13.76 0.00 39.18 1.89
511 552 1.253593 TGCATGGGCGTGCCAAATAA 61.254 50.000 13.76 0.00 44.43 1.40
512 553 1.042003 ATGCATGGGCGTGCCAAATA 61.042 50.000 13.76 0.00 44.43 1.40
513 554 1.901654 AATGCATGGGCGTGCCAAAT 61.902 50.000 13.76 2.79 44.43 2.32
514 555 2.581547 AATGCATGGGCGTGCCAAA 61.582 52.632 13.76 0.12 44.43 3.28
515 556 2.996153 AATGCATGGGCGTGCCAA 60.996 55.556 13.76 0.56 44.43 4.52
516 557 3.761140 CAATGCATGGGCGTGCCA 61.761 61.111 13.76 0.00 44.43 4.92
517 558 4.517815 CCAATGCATGGGCGTGCC 62.518 66.667 7.32 1.16 46.27 5.01
528 569 0.952010 CAAGTTTGCCCTGCCAATGC 60.952 55.000 0.00 0.00 38.26 3.56
529 570 0.320946 CCAAGTTTGCCCTGCCAATG 60.321 55.000 0.00 0.00 0.00 2.82
530 571 1.482748 CCCAAGTTTGCCCTGCCAAT 61.483 55.000 0.00 0.00 0.00 3.16
531 572 2.139484 CCCAAGTTTGCCCTGCCAA 61.139 57.895 0.00 0.00 0.00 4.52
532 573 2.523902 CCCAAGTTTGCCCTGCCA 60.524 61.111 0.00 0.00 0.00 4.92
533 574 4.007644 GCCCAAGTTTGCCCTGCC 62.008 66.667 0.00 0.00 0.00 4.85
534 575 3.230522 CTGCCCAAGTTTGCCCTGC 62.231 63.158 0.00 0.00 0.00 4.85
535 576 1.114722 TTCTGCCCAAGTTTGCCCTG 61.115 55.000 0.00 0.00 0.00 4.45
536 577 0.178924 ATTCTGCCCAAGTTTGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
537 578 0.247460 GATTCTGCCCAAGTTTGCCC 59.753 55.000 0.00 0.00 0.00 5.36
538 579 0.247460 GGATTCTGCCCAAGTTTGCC 59.753 55.000 0.00 0.00 0.00 4.52
539 580 0.968405 TGGATTCTGCCCAAGTTTGC 59.032 50.000 0.00 0.00 0.00 3.68
540 581 3.749665 TTTGGATTCTGCCCAAGTTTG 57.250 42.857 0.00 0.00 43.72 2.93
541 582 4.467438 CCTATTTGGATTCTGCCCAAGTTT 59.533 41.667 0.00 0.00 43.72 2.66
542 583 4.026052 CCTATTTGGATTCTGCCCAAGTT 58.974 43.478 0.00 0.00 43.72 2.66
543 584 3.635591 CCTATTTGGATTCTGCCCAAGT 58.364 45.455 0.00 0.00 43.72 3.16
544 585 2.363359 GCCTATTTGGATTCTGCCCAAG 59.637 50.000 0.00 0.00 43.72 3.61
545 586 2.387757 GCCTATTTGGATTCTGCCCAA 58.612 47.619 0.00 0.00 41.53 4.12
546 587 1.411501 GGCCTATTTGGATTCTGCCCA 60.412 52.381 0.00 0.00 38.35 5.36
547 588 1.332195 GGCCTATTTGGATTCTGCCC 58.668 55.000 0.00 0.00 38.35 5.36
548 589 1.133356 AGGGCCTATTTGGATTCTGCC 60.133 52.381 2.82 0.00 38.35 4.85
549 590 2.371658 AGGGCCTATTTGGATTCTGC 57.628 50.000 2.82 0.00 38.35 4.26
550 591 4.437682 TGTAGGGCCTATTTGGATTCTG 57.562 45.455 17.90 0.00 38.35 3.02
551 592 5.669798 ATTGTAGGGCCTATTTGGATTCT 57.330 39.130 17.90 0.00 38.35 2.40
552 593 5.833131 TGAATTGTAGGGCCTATTTGGATTC 59.167 40.000 17.90 18.91 38.35 2.52
553 594 5.776358 TGAATTGTAGGGCCTATTTGGATT 58.224 37.500 17.90 12.01 38.35 3.01
554 595 5.103515 ACTGAATTGTAGGGCCTATTTGGAT 60.104 40.000 17.90 4.12 38.35 3.41
555 596 4.229582 ACTGAATTGTAGGGCCTATTTGGA 59.770 41.667 17.90 1.80 38.35 3.53
556 597 4.536765 ACTGAATTGTAGGGCCTATTTGG 58.463 43.478 17.90 7.64 39.35 3.28
557 598 6.601613 TGTTACTGAATTGTAGGGCCTATTTG 59.398 38.462 17.90 7.98 0.00 2.32
558 599 6.727394 TGTTACTGAATTGTAGGGCCTATTT 58.273 36.000 17.90 11.00 0.00 1.40
559 600 6.321821 TGTTACTGAATTGTAGGGCCTATT 57.678 37.500 17.90 8.26 0.00 1.73
560 601 5.968676 TGTTACTGAATTGTAGGGCCTAT 57.031 39.130 17.90 0.00 0.00 2.57
561 602 5.338871 CCTTGTTACTGAATTGTAGGGCCTA 60.339 44.000 9.81 9.81 0.00 3.93
562 603 4.567747 CCTTGTTACTGAATTGTAGGGCCT 60.568 45.833 12.58 12.58 0.00 5.19
563 604 3.694566 CCTTGTTACTGAATTGTAGGGCC 59.305 47.826 0.00 0.00 0.00 5.80
564 605 4.585879 TCCTTGTTACTGAATTGTAGGGC 58.414 43.478 0.00 0.00 0.00 5.19
565 606 6.472887 TCTTCCTTGTTACTGAATTGTAGGG 58.527 40.000 0.00 0.00 0.00 3.53
566 607 6.595716 CCTCTTCCTTGTTACTGAATTGTAGG 59.404 42.308 0.00 0.00 0.00 3.18
572 613 3.308473 GCCCCTCTTCCTTGTTACTGAAT 60.308 47.826 0.00 0.00 0.00 2.57
578 619 2.505819 GAGATGCCCCTCTTCCTTGTTA 59.494 50.000 0.00 0.00 0.00 2.41
589 1534 5.158141 TCTCATGTATAAAGAGATGCCCCT 58.842 41.667 0.00 0.00 33.75 4.79
601 1546 9.378551 GTGAACCACTAACATTCTCATGTATAA 57.621 33.333 0.00 0.00 43.34 0.98
618 1563 7.194483 TGTTTATGCCAACATAGTGAACCACT 61.194 38.462 4.92 4.92 39.87 4.00
672 1617 5.879223 AGATGTTCATACAAGCAGAAGAAGG 59.121 40.000 0.00 0.00 37.91 3.46
726 1671 7.690952 ACAGGGTATGAGCGTAAAATAAAAA 57.309 32.000 0.00 0.00 0.00 1.94
811 1759 2.549064 AAGCAAAAACATTCCCTGCC 57.451 45.000 0.00 0.00 33.41 4.85
813 1761 5.816777 TCTCAAAAAGCAAAAACATTCCCTG 59.183 36.000 0.00 0.00 0.00 4.45
814 1762 5.988287 TCTCAAAAAGCAAAAACATTCCCT 58.012 33.333 0.00 0.00 0.00 4.20
828 1812 4.191544 TGGCGAGGTGATATCTCAAAAAG 58.808 43.478 3.98 0.00 31.85 2.27
855 1839 6.985059 GGGCTTGAGTCGTCTACTTTTATAAT 59.015 38.462 0.00 0.00 39.07 1.28
856 1840 6.071221 TGGGCTTGAGTCGTCTACTTTTATAA 60.071 38.462 0.00 0.00 39.07 0.98
857 1841 5.419788 TGGGCTTGAGTCGTCTACTTTTATA 59.580 40.000 0.00 0.00 39.07 0.98
858 1842 4.222145 TGGGCTTGAGTCGTCTACTTTTAT 59.778 41.667 0.00 0.00 39.07 1.40
902 1886 1.915228 CCTGTTGATGGTCCGGGAT 59.085 57.895 0.00 0.00 0.00 3.85
903 1887 2.966732 GCCTGTTGATGGTCCGGGA 61.967 63.158 0.00 0.00 0.00 5.14
947 1938 3.078836 GGCTGGTAGTGCCCGGTA 61.079 66.667 0.00 0.00 44.32 4.02
953 1944 2.361230 GGGGTTGGCTGGTAGTGC 60.361 66.667 0.00 0.00 0.00 4.40
1056 2053 4.589675 GCGGGGTTTGTGGTGGGA 62.590 66.667 0.00 0.00 0.00 4.37
1230 2263 3.797353 GCCATGCGGGGGAAGAGA 61.797 66.667 0.00 0.00 37.04 3.10
1254 2287 2.286121 TGAAAGAGGGCCCCCGAT 60.286 61.111 21.43 0.00 41.95 4.18
1321 2429 1.079127 AGTGGAATTCGGTGGAGCG 60.079 57.895 0.00 0.00 0.00 5.03
1324 2432 1.278127 GAAGGAGTGGAATTCGGTGGA 59.722 52.381 0.00 0.00 0.00 4.02
1392 2542 3.655810 CTCGCCTGTGAGGAGGTGC 62.656 68.421 0.00 0.00 42.52 5.01
1441 2604 3.413327 AGACGACTTCTTCAGAGTAGCA 58.587 45.455 0.00 0.00 0.00 3.49
1443 2606 6.580791 CAGAAAAGACGACTTCTTCAGAGTAG 59.419 42.308 17.25 0.00 44.41 2.57
1444 2607 6.439599 CAGAAAAGACGACTTCTTCAGAGTA 58.560 40.000 17.25 0.00 44.41 2.59
1498 2661 1.108132 CAGTAGTAGAGGACCCGGCC 61.108 65.000 0.00 0.00 0.00 6.13
1550 2713 3.499737 GGTGGCCTTCATCGCACG 61.500 66.667 3.32 0.00 0.00 5.34
1579 2742 1.453155 GTGCCCTTGACGAACATCAT 58.547 50.000 0.00 0.00 0.00 2.45
1607 2770 2.294074 GGTAATGCGGGTAAATCAGCA 58.706 47.619 0.00 0.00 44.13 4.41
1620 2789 1.429423 GACAGCAAGGCGGTAATGC 59.571 57.895 0.00 0.00 37.05 3.56
1659 2828 4.039973 TCTCCAAGAAACGACAATACCACT 59.960 41.667 0.00 0.00 0.00 4.00
1698 2867 6.133356 TGGACCTGGAAAAATGTTAACTTCT 58.867 36.000 7.22 0.00 0.00 2.85
1709 2878 2.892852 CAGAGCATTGGACCTGGAAAAA 59.107 45.455 0.00 0.00 0.00 1.94
1712 2881 0.329261 CCAGAGCATTGGACCTGGAA 59.671 55.000 0.00 0.00 46.84 3.53
1714 2883 1.751927 GCCAGAGCATTGGACCTGG 60.752 63.158 10.40 0.00 46.67 4.45
1716 2885 0.835941 CTAGCCAGAGCATTGGACCT 59.164 55.000 10.40 2.13 43.56 3.85
1774 2943 3.074412 GGTACACACATGGAAGGAACTG 58.926 50.000 0.00 0.00 40.86 3.16
1920 3093 0.537653 GTACAAGCAGTCCCTCCCTC 59.462 60.000 0.00 0.00 0.00 4.30
1921 3094 0.117340 AGTACAAGCAGTCCCTCCCT 59.883 55.000 0.00 0.00 0.00 4.20
1922 3095 0.984995 AAGTACAAGCAGTCCCTCCC 59.015 55.000 0.00 0.00 0.00 4.30
1923 3096 1.623811 TGAAGTACAAGCAGTCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
1924 3097 2.300437 AGTGAAGTACAAGCAGTCCCTC 59.700 50.000 0.00 0.00 0.00 4.30
1954 3127 0.460311 AATACTCGCTCCACTTCCCG 59.540 55.000 0.00 0.00 0.00 5.14
2075 3254 4.457834 ACCTTGAGAACTTCTGGATACG 57.542 45.455 0.00 0.00 42.51 3.06
2262 3469 6.757010 CCACCTTATAATGACACACACTAGAC 59.243 42.308 0.00 0.00 0.00 2.59
2271 3478 4.230745 ACACCCCACCTTATAATGACAC 57.769 45.455 0.00 0.00 0.00 3.67
2288 5372 2.933906 TGTCGAACACTTCAAGAACACC 59.066 45.455 0.00 0.00 0.00 4.16
2303 5387 0.179032 TTGCTTTCAGGCCTGTCGAA 60.179 50.000 31.58 21.83 0.00 3.71
2368 5483 4.894114 TCCTTAATACAGTCTGGGTCTAGC 59.106 45.833 4.53 0.00 0.00 3.42
2375 5490 4.837093 TTGGGTCCTTAATACAGTCTGG 57.163 45.455 4.53 0.00 0.00 3.86
2377 5492 4.600111 TGGTTTGGGTCCTTAATACAGTCT 59.400 41.667 0.00 0.00 0.00 3.24
2498 5613 3.505680 TGACTTCGCTAAACAATGGCATT 59.494 39.130 6.96 6.96 0.00 3.56
2514 5629 1.000163 TCCAAGACAGCGACTGACTTC 60.000 52.381 16.60 5.26 42.43 3.01
2520 5635 1.006102 CGGTTCCAAGACAGCGACT 60.006 57.895 0.00 0.00 35.95 4.18
2552 5811 6.816640 TGCTCCAAACATACTGTTATAGACAC 59.183 38.462 0.00 0.00 40.14 3.67
2553 5812 6.816640 GTGCTCCAAACATACTGTTATAGACA 59.183 38.462 0.00 0.00 40.14 3.41
2572 5831 3.559238 CACAGTAACAAATGGTGCTCC 57.441 47.619 0.00 0.00 0.00 4.70
2576 5835 3.982701 CACATGCACAGTAACAAATGGTG 59.017 43.478 0.00 0.00 0.00 4.17
2577 5836 3.552684 GCACATGCACAGTAACAAATGGT 60.553 43.478 0.00 0.00 41.59 3.55
2578 5837 2.988493 GCACATGCACAGTAACAAATGG 59.012 45.455 0.00 0.00 41.59 3.16
2637 5896 5.337652 CCCACTTAAAACTCAAAACCCACAA 60.338 40.000 0.00 0.00 0.00 3.33
2638 5897 4.160626 CCCACTTAAAACTCAAAACCCACA 59.839 41.667 0.00 0.00 0.00 4.17
2639 5898 4.689071 CCCACTTAAAACTCAAAACCCAC 58.311 43.478 0.00 0.00 0.00 4.61
2645 5904 2.962421 CCCTGCCCACTTAAAACTCAAA 59.038 45.455 0.00 0.00 0.00 2.69
2646 5905 2.593026 CCCTGCCCACTTAAAACTCAA 58.407 47.619 0.00 0.00 0.00 3.02
2682 5941 5.220605 CCAAAACAACGCTATAACTCTAGCC 60.221 44.000 0.00 0.00 40.87 3.93
2701 5960 3.181477 TGACTTAACGACGAGTCCCAAAA 60.181 43.478 0.00 0.00 41.19 2.44
2714 5973 5.065218 AGCAAGCATTATTCCTGACTTAACG 59.935 40.000 0.00 0.00 0.00 3.18
2717 5976 6.179756 TGAAGCAAGCATTATTCCTGACTTA 58.820 36.000 0.00 0.00 0.00 2.24
2745 6004 7.826252 CAGCATTAGGTTTAGCAGGATACATAT 59.174 37.037 0.00 0.00 41.41 1.78
2796 6055 2.294233 GCAATGCAGACCAAGAAGACAA 59.706 45.455 0.00 0.00 0.00 3.18
2946 6208 2.629336 TGTTACAGACCACATGCACA 57.371 45.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.