Multiple sequence alignment - TraesCS3B01G539100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G539100 chr3B 100.000 2790 0 0 1 2790 778455139 778457928 0.000000e+00 5153.0
1 TraesCS3B01G539100 chr3B 96.246 586 20 2 1895 2480 778540378 778540961 0.000000e+00 959.0
2 TraesCS3B01G539100 chr3B 92.891 211 3 5 2580 2790 778540956 778541154 2.100000e-76 296.0
3 TraesCS3B01G539100 chr3B 83.442 308 43 4 1005 1308 779307845 779307542 2.120000e-71 279.0
4 TraesCS3B01G539100 chr3B 82.428 313 50 3 1007 1318 776121387 776121079 4.580000e-68 268.0
5 TraesCS3B01G539100 chr3B 83.165 297 45 4 1013 1308 778660267 778660559 1.650000e-67 267.0
6 TraesCS3B01G539100 chr3B 84.659 176 14 4 2580 2755 778470157 778470319 2.220000e-36 163.0
7 TraesCS3B01G539100 chr3D 93.201 1162 61 8 918 2064 582826366 582825208 0.000000e+00 1692.0
8 TraesCS3B01G539100 chr3D 93.515 293 13 5 633 921 582826708 582826418 5.520000e-117 431.0
9 TraesCS3B01G539100 chr3D 90.941 287 16 8 123 407 582827024 582826746 7.290000e-101 377.0
10 TraesCS3B01G539100 chr3D 81.587 315 49 6 1007 1318 580587668 580587360 4.610000e-63 252.0
11 TraesCS3B01G539100 chr3D 85.897 234 30 3 404 634 104811447 104811214 2.150000e-61 246.0
12 TraesCS3B01G539100 chr3D 85.837 233 28 5 404 634 58208597 58208826 2.780000e-60 243.0
13 TraesCS3B01G539100 chr3D 81.695 295 49 3 1005 1298 582156850 582157140 9.990000e-60 241.0
14 TraesCS3B01G539100 chr3D 77.258 299 61 5 1021 1317 582849802 582849509 4.780000e-38 169.0
15 TraesCS3B01G539100 chr3D 79.104 134 25 3 1484 1615 582816841 582816709 3.830000e-14 89.8
16 TraesCS3B01G539100 chrUn 96.758 586 17 2 1895 2480 337842762 337842179 0.000000e+00 976.0
17 TraesCS3B01G539100 chrUn 96.587 586 18 2 1895 2480 378320325 378320908 0.000000e+00 970.0
18 TraesCS3B01G539100 chrUn 96.587 586 18 2 1895 2480 378322124 378322707 0.000000e+00 970.0
19 TraesCS3B01G539100 chrUn 96.587 586 18 2 1895 2480 465939660 465940243 0.000000e+00 970.0
20 TraesCS3B01G539100 chrUn 97.187 391 11 0 2090 2480 399551496 399551106 0.000000e+00 662.0
21 TraesCS3B01G539100 chrUn 93.365 211 3 5 2580 2790 337842184 337841985 4.520000e-78 302.0
22 TraesCS3B01G539100 chrUn 93.365 211 3 5 2580 2790 399551111 399550912 4.520000e-78 302.0
23 TraesCS3B01G539100 chrUn 92.417 211 4 5 2580 2790 378320903 378321101 9.780000e-75 291.0
24 TraesCS3B01G539100 chrUn 92.417 211 4 5 2580 2790 378322702 378322900 9.780000e-75 291.0
25 TraesCS3B01G539100 chrUn 92.417 211 4 5 2580 2790 465940238 465940436 9.780000e-75 291.0
26 TraesCS3B01G539100 chrUn 84.659 176 14 4 2580 2755 41597943 41597781 2.220000e-36 163.0
27 TraesCS3B01G539100 chr2D 87.013 231 30 0 404 634 159382452 159382682 7.660000e-66 261.0
28 TraesCS3B01G539100 chr2D 86.344 227 31 0 404 630 197307009 197306783 5.970000e-62 248.0
29 TraesCS3B01G539100 chr2D 85.776 232 31 2 404 634 404473089 404472859 7.720000e-61 244.0
30 TraesCS3B01G539100 chr2D 87.560 209 24 2 4 212 645896568 645896774 9.990000e-60 241.0
31 TraesCS3B01G539100 chr2D 82.775 209 33 3 4 211 56196777 56196983 1.710000e-42 183.0
32 TraesCS3B01G539100 chr2A 87.225 227 28 1 404 630 522232269 522232044 9.920000e-65 257.0
33 TraesCS3B01G539100 chr2A 85.922 206 27 2 4 209 771620207 771620410 4.680000e-53 219.0
34 TraesCS3B01G539100 chr3A 81.470 313 52 4 1007 1318 716106528 716106221 4.610000e-63 252.0
35 TraesCS3B01G539100 chr3A 80.818 318 58 2 1000 1317 716098203 716097889 2.150000e-61 246.0
36 TraesCS3B01G539100 chr6A 86.607 224 30 0 404 627 294861705 294861482 5.970000e-62 248.0
37 TraesCS3B01G539100 chr7D 85.837 233 31 2 404 634 2093456 2093224 2.150000e-61 246.0
38 TraesCS3B01G539100 chr7D 85.408 233 33 1 403 634 407258821 407258589 9.990000e-60 241.0
39 TraesCS3B01G539100 chr7D 79.560 318 60 3 1001 1317 8433439 8433126 3.620000e-54 222.0
40 TraesCS3B01G539100 chr7D 84.729 203 26 2 12 210 630795835 630796036 6.100000e-47 198.0
41 TraesCS3B01G539100 chr7D 83.732 209 31 3 4 211 484439851 484439645 7.880000e-46 195.0
42 TraesCS3B01G539100 chr7D 81.140 228 40 1 1090 1317 8370057 8369833 2.210000e-41 180.0
43 TraesCS3B01G539100 chr7D 95.455 110 5 0 2475 2584 19020333 19020442 2.860000e-40 176.0
44 TraesCS3B01G539100 chr7D 76.866 268 51 5 1001 1261 8415642 8415379 1.040000e-29 141.0
45 TraesCS3B01G539100 chr4A 80.126 317 59 2 1001 1317 731391576 731391888 1.670000e-57 233.0
46 TraesCS3B01G539100 chr4A 79.811 317 61 1 1001 1317 731311605 731311292 7.770000e-56 228.0
47 TraesCS3B01G539100 chr4A 82.960 223 36 2 4 226 625241577 625241797 1.690000e-47 200.0
48 TraesCS3B01G539100 chr6D 86.603 209 26 2 4 211 440639703 440639496 2.160000e-56 230.0
49 TraesCS3B01G539100 chr7A 79.233 313 58 4 1007 1317 8803665 8803358 7.830000e-51 211.0
50 TraesCS3B01G539100 chr4D 86.957 184 23 1 29 211 334111641 334111458 3.640000e-49 206.0
51 TraesCS3B01G539100 chr4D 83.412 211 32 2 4 211 74366624 74366414 2.840000e-45 193.0
52 TraesCS3B01G539100 chr4B 93.860 114 7 0 2474 2587 565865852 565865965 3.690000e-39 172.0
53 TraesCS3B01G539100 chr6B 95.327 107 5 0 2477 2583 30889182 30889076 1.330000e-38 171.0
54 TraesCS3B01G539100 chr5B 92.982 114 8 0 2473 2586 281433782 281433895 1.720000e-37 167.0
55 TraesCS3B01G539100 chr5B 93.694 111 7 0 2474 2584 659470646 659470536 1.720000e-37 167.0
56 TraesCS3B01G539100 chr2B 93.694 111 7 0 2473 2583 612680048 612680158 1.720000e-37 167.0
57 TraesCS3B01G539100 chr2B 93.694 111 7 0 2476 2586 766568270 766568160 1.720000e-37 167.0
58 TraesCS3B01G539100 chr2B 93.636 110 7 0 2470 2579 134367323 134367432 6.180000e-37 165.0
59 TraesCS3B01G539100 chr7B 91.525 118 8 2 2476 2592 495311917 495311801 8.000000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G539100 chr3B 778455139 778457928 2789 False 5153.000000 5153 100.000000 1 2790 1 chr3B.!!$F1 2789
1 TraesCS3B01G539100 chr3B 778540378 778541154 776 False 627.500000 959 94.568500 1895 2790 2 chr3B.!!$F4 895
2 TraesCS3B01G539100 chr3D 582825208 582827024 1816 True 833.333333 1692 92.552333 123 2064 3 chr3D.!!$R5 1941
3 TraesCS3B01G539100 chrUn 337841985 337842762 777 True 639.000000 976 95.061500 1895 2790 2 chrUn.!!$R2 895
4 TraesCS3B01G539100 chrUn 378320325 378322900 2575 False 630.500000 970 94.502000 1895 2790 4 chrUn.!!$F1 895
5 TraesCS3B01G539100 chrUn 465939660 465940436 776 False 630.500000 970 94.502000 1895 2790 2 chrUn.!!$F2 895
6 TraesCS3B01G539100 chrUn 399550912 399551496 584 True 482.000000 662 95.276000 2090 2790 2 chrUn.!!$R3 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 433 1.279846 TCCGTCCTGGTTTATTGTCCC 59.72 52.381 0.0 0.0 39.52 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 2503 0.039035 TGACCTTTTTATGCCCGGCT 59.961 50.0 11.61 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.831550 TGACCATTAATTTTACCAACAAAAAGC 58.168 29.630 0.00 0.00 31.54 3.51
49 50 7.856556 ACCATTAATTTTACCAACAAAAAGCG 58.143 30.769 0.00 0.00 31.54 4.68
50 51 7.711339 ACCATTAATTTTACCAACAAAAAGCGA 59.289 29.630 0.00 0.00 31.54 4.93
51 52 8.220434 CCATTAATTTTACCAACAAAAAGCGAG 58.780 33.333 0.00 0.00 31.54 5.03
52 53 8.760569 CATTAATTTTACCAACAAAAAGCGAGT 58.239 29.630 0.00 0.00 31.54 4.18
53 54 8.705048 TTAATTTTACCAACAAAAAGCGAGTT 57.295 26.923 0.00 0.00 31.54 3.01
54 55 9.798994 TTAATTTTACCAACAAAAAGCGAGTTA 57.201 25.926 0.00 0.00 31.54 2.24
55 56 8.880878 AATTTTACCAACAAAAAGCGAGTTAT 57.119 26.923 0.00 0.00 31.54 1.89
56 57 9.968870 AATTTTACCAACAAAAAGCGAGTTATA 57.031 25.926 0.00 0.00 31.54 0.98
58 59 8.958175 TTTACCAACAAAAAGCGAGTTATATG 57.042 30.769 0.00 0.00 0.00 1.78
59 60 5.399013 ACCAACAAAAAGCGAGTTATATGC 58.601 37.500 0.00 0.00 0.00 3.14
60 61 4.798387 CCAACAAAAAGCGAGTTATATGCC 59.202 41.667 0.00 0.00 0.00 4.40
61 62 5.398169 CAACAAAAAGCGAGTTATATGCCA 58.602 37.500 0.00 0.00 0.00 4.92
62 63 4.981794 ACAAAAAGCGAGTTATATGCCAC 58.018 39.130 0.00 0.00 0.00 5.01
63 64 4.457603 ACAAAAAGCGAGTTATATGCCACA 59.542 37.500 0.00 0.00 0.00 4.17
64 65 5.048364 ACAAAAAGCGAGTTATATGCCACAA 60.048 36.000 0.00 0.00 0.00 3.33
65 66 5.637006 AAAAGCGAGTTATATGCCACAAA 57.363 34.783 0.00 0.00 0.00 2.83
66 67 5.637006 AAAGCGAGTTATATGCCACAAAA 57.363 34.783 0.00 0.00 0.00 2.44
67 68 5.637006 AAGCGAGTTATATGCCACAAAAA 57.363 34.783 0.00 0.00 0.00 1.94
68 69 5.235305 AGCGAGTTATATGCCACAAAAAG 57.765 39.130 0.00 0.00 0.00 2.27
69 70 4.700213 AGCGAGTTATATGCCACAAAAAGT 59.300 37.500 0.00 0.00 0.00 2.66
70 71 5.878116 AGCGAGTTATATGCCACAAAAAGTA 59.122 36.000 0.00 0.00 0.00 2.24
71 72 6.542370 AGCGAGTTATATGCCACAAAAAGTAT 59.458 34.615 0.00 0.00 0.00 2.12
72 73 6.632834 GCGAGTTATATGCCACAAAAAGTATG 59.367 38.462 0.00 0.00 0.00 2.39
73 74 6.632834 CGAGTTATATGCCACAAAAAGTATGC 59.367 38.462 0.00 0.00 0.00 3.14
74 75 6.805713 AGTTATATGCCACAAAAAGTATGCC 58.194 36.000 0.00 0.00 0.00 4.40
75 76 6.379703 AGTTATATGCCACAAAAAGTATGCCA 59.620 34.615 0.00 0.00 0.00 4.92
76 77 5.874897 ATATGCCACAAAAAGTATGCCAT 57.125 34.783 0.00 0.00 0.00 4.40
77 78 4.556592 ATGCCACAAAAAGTATGCCATT 57.443 36.364 0.00 0.00 0.00 3.16
78 79 3.661944 TGCCACAAAAAGTATGCCATTG 58.338 40.909 0.00 0.00 0.00 2.82
79 80 3.002102 GCCACAAAAAGTATGCCATTGG 58.998 45.455 0.00 0.00 0.00 3.16
80 81 3.306641 GCCACAAAAAGTATGCCATTGGA 60.307 43.478 6.95 0.00 0.00 3.53
81 82 4.623647 GCCACAAAAAGTATGCCATTGGAT 60.624 41.667 6.95 0.00 0.00 3.41
82 83 4.871557 CCACAAAAAGTATGCCATTGGATG 59.128 41.667 6.95 0.00 0.00 3.51
83 84 4.330620 CACAAAAAGTATGCCATTGGATGC 59.669 41.667 6.95 1.34 0.00 3.91
84 85 4.020396 ACAAAAAGTATGCCATTGGATGCA 60.020 37.500 6.95 0.00 42.52 3.96
85 86 3.806625 AAAGTATGCCATTGGATGCAC 57.193 42.857 6.95 0.00 40.88 4.57
86 87 2.440517 AGTATGCCATTGGATGCACA 57.559 45.000 6.95 0.00 40.88 4.57
87 88 2.953453 AGTATGCCATTGGATGCACAT 58.047 42.857 6.95 2.48 40.88 3.21
88 89 3.302161 AGTATGCCATTGGATGCACATT 58.698 40.909 6.95 0.00 40.88 2.71
89 90 3.707611 AGTATGCCATTGGATGCACATTT 59.292 39.130 6.95 0.00 40.88 2.32
90 91 2.388310 TGCCATTGGATGCACATTTG 57.612 45.000 6.95 0.00 31.31 2.32
91 92 1.900486 TGCCATTGGATGCACATTTGA 59.100 42.857 6.95 0.00 31.31 2.69
92 93 2.302157 TGCCATTGGATGCACATTTGAA 59.698 40.909 6.95 0.00 31.31 2.69
93 94 3.244457 TGCCATTGGATGCACATTTGAAA 60.244 39.130 6.95 0.00 31.31 2.69
94 95 3.372822 GCCATTGGATGCACATTTGAAAG 59.627 43.478 6.95 0.00 0.00 2.62
95 96 4.823157 CCATTGGATGCACATTTGAAAGA 58.177 39.130 0.00 0.00 0.00 2.52
96 97 5.239351 CCATTGGATGCACATTTGAAAGAA 58.761 37.500 0.00 0.00 0.00 2.52
97 98 5.878116 CCATTGGATGCACATTTGAAAGAAT 59.122 36.000 0.00 0.00 0.00 2.40
98 99 6.373216 CCATTGGATGCACATTTGAAAGAATT 59.627 34.615 0.00 0.00 0.00 2.17
99 100 7.094549 CCATTGGATGCACATTTGAAAGAATTT 60.095 33.333 0.00 0.00 43.98 1.82
100 101 7.804843 TTGGATGCACATTTGAAAGAATTTT 57.195 28.000 0.00 0.00 39.27 1.82
101 102 7.424227 TGGATGCACATTTGAAAGAATTTTC 57.576 32.000 0.00 0.00 39.27 2.29
102 103 6.427547 TGGATGCACATTTGAAAGAATTTTCC 59.572 34.615 0.00 0.00 39.27 3.13
103 104 5.903764 TGCACATTTGAAAGAATTTTCCG 57.096 34.783 0.00 0.00 39.27 4.30
104 105 5.595885 TGCACATTTGAAAGAATTTTCCGA 58.404 33.333 0.00 0.00 39.27 4.55
105 106 6.222389 TGCACATTTGAAAGAATTTTCCGAT 58.778 32.000 0.00 0.00 39.27 4.18
106 107 6.145858 TGCACATTTGAAAGAATTTTCCGATG 59.854 34.615 0.00 9.33 39.27 3.84
107 108 6.365789 GCACATTTGAAAGAATTTTCCGATGA 59.634 34.615 14.27 0.00 39.27 2.92
108 109 7.063780 GCACATTTGAAAGAATTTTCCGATGAT 59.936 33.333 14.27 0.00 39.27 2.45
109 110 9.571810 CACATTTGAAAGAATTTTCCGATGATA 57.428 29.630 14.27 0.00 39.27 2.15
207 208 5.130477 GGTCTTGTATACAGAAATGGAGGGA 59.870 44.000 5.56 0.00 0.00 4.20
300 301 8.575649 AACCGAGAAATAACCATTTGTAGATT 57.424 30.769 0.00 0.00 34.44 2.40
319 321 3.309961 TTGATGATCATAGCCGCTCTC 57.690 47.619 8.54 0.00 0.00 3.20
325 327 2.010145 TCATAGCCGCTCTCACAAAC 57.990 50.000 0.00 0.00 0.00 2.93
329 332 2.301577 AGCCGCTCTCACAAACTATC 57.698 50.000 0.00 0.00 0.00 2.08
350 353 7.928706 ACTATCCATACTTCTATGTCAGCAAAC 59.071 37.037 0.00 0.00 0.00 2.93
351 354 6.048732 TCCATACTTCTATGTCAGCAAACA 57.951 37.500 0.00 0.00 0.00 2.83
352 355 6.472016 TCCATACTTCTATGTCAGCAAACAA 58.528 36.000 0.00 0.00 31.81 2.83
411 414 7.690952 AAAGATATCCACGATCTACTACCTC 57.309 40.000 0.00 0.00 33.20 3.85
412 415 5.747342 AGATATCCACGATCTACTACCTCC 58.253 45.833 0.00 0.00 31.72 4.30
416 419 1.872313 CACGATCTACTACCTCCGTCC 59.128 57.143 0.00 0.00 0.00 4.79
417 420 1.767681 ACGATCTACTACCTCCGTCCT 59.232 52.381 0.00 0.00 0.00 3.85
418 421 2.144730 CGATCTACTACCTCCGTCCTG 58.855 57.143 0.00 0.00 0.00 3.86
419 422 2.506444 GATCTACTACCTCCGTCCTGG 58.494 57.143 0.00 0.00 40.09 4.45
420 423 1.293062 TCTACTACCTCCGTCCTGGT 58.707 55.000 0.00 0.00 39.52 4.00
421 424 1.637553 TCTACTACCTCCGTCCTGGTT 59.362 52.381 0.00 0.00 39.52 3.67
422 425 2.042162 TCTACTACCTCCGTCCTGGTTT 59.958 50.000 0.00 0.00 39.52 3.27
423 426 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
424 427 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
425 428 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
426 429 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
427 430 1.982958 ACCTCCGTCCTGGTTTATTGT 59.017 47.619 0.00 0.00 39.52 2.71
430 433 1.279846 TCCGTCCTGGTTTATTGTCCC 59.720 52.381 0.00 0.00 39.52 4.46
431 434 1.680860 CCGTCCTGGTTTATTGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
432 435 1.680860 CGTCCTGGTTTATTGTCCCCC 60.681 57.143 0.00 0.00 0.00 5.40
433 436 1.639108 GTCCTGGTTTATTGTCCCCCT 59.361 52.381 0.00 0.00 0.00 4.79
434 437 2.042569 GTCCTGGTTTATTGTCCCCCTT 59.957 50.000 0.00 0.00 0.00 3.95
437 440 3.268595 CCTGGTTTATTGTCCCCCTTAGT 59.731 47.826 0.00 0.00 0.00 2.24
439 442 5.133830 CCTGGTTTATTGTCCCCCTTAGTAT 59.866 44.000 0.00 0.00 0.00 2.12
440 443 6.354477 CCTGGTTTATTGTCCCCCTTAGTATT 60.354 42.308 0.00 0.00 0.00 1.89
443 446 7.397761 TGGTTTATTGTCCCCCTTAGTATTTTG 59.602 37.037 0.00 0.00 0.00 2.44
444 447 7.398047 GGTTTATTGTCCCCCTTAGTATTTTGT 59.602 37.037 0.00 0.00 0.00 2.83
445 448 7.948034 TTATTGTCCCCCTTAGTATTTTGTG 57.052 36.000 0.00 0.00 0.00 3.33
446 449 3.692690 TGTCCCCCTTAGTATTTTGTGC 58.307 45.455 0.00 0.00 0.00 4.57
447 450 3.021695 GTCCCCCTTAGTATTTTGTGCC 58.978 50.000 0.00 0.00 0.00 5.01
448 451 2.650322 TCCCCCTTAGTATTTTGTGCCA 59.350 45.455 0.00 0.00 0.00 4.92
449 452 3.076182 TCCCCCTTAGTATTTTGTGCCAA 59.924 43.478 0.00 0.00 0.00 4.52
450 453 3.835395 CCCCCTTAGTATTTTGTGCCAAA 59.165 43.478 0.00 0.00 0.00 3.28
451 454 4.469586 CCCCCTTAGTATTTTGTGCCAAAT 59.530 41.667 1.89 0.00 0.00 2.32
452 455 5.045942 CCCCCTTAGTATTTTGTGCCAAATT 60.046 40.000 1.89 2.10 0.00 1.82
453 456 6.472016 CCCCTTAGTATTTTGTGCCAAATTT 58.528 36.000 1.89 0.00 0.00 1.82
454 457 6.939730 CCCCTTAGTATTTTGTGCCAAATTTT 59.060 34.615 1.89 0.00 0.00 1.82
455 458 7.094848 CCCCTTAGTATTTTGTGCCAAATTTTG 60.095 37.037 1.99 1.99 0.00 2.44
456 459 7.659390 CCCTTAGTATTTTGTGCCAAATTTTGA 59.341 33.333 10.72 0.00 0.00 2.69
457 460 8.495148 CCTTAGTATTTTGTGCCAAATTTTGAC 58.505 33.333 10.72 0.00 0.00 3.18
458 461 9.260002 CTTAGTATTTTGTGCCAAATTTTGACT 57.740 29.630 10.72 5.38 0.00 3.41
461 464 9.206870 AGTATTTTGTGCCAAATTTTGACTATG 57.793 29.630 10.72 0.00 0.00 2.23
462 465 9.202273 GTATTTTGTGCCAAATTTTGACTATGA 57.798 29.630 10.72 0.00 0.00 2.15
463 466 8.674263 ATTTTGTGCCAAATTTTGACTATGAA 57.326 26.923 10.72 0.30 0.00 2.57
464 467 8.674263 TTTTGTGCCAAATTTTGACTATGAAT 57.326 26.923 10.72 0.00 0.00 2.57
465 468 8.674263 TTTGTGCCAAATTTTGACTATGAATT 57.326 26.923 10.72 0.00 0.00 2.17
466 469 8.674263 TTGTGCCAAATTTTGACTATGAATTT 57.326 26.923 10.72 0.00 34.33 1.82
467 470 8.309163 TGTGCCAAATTTTGACTATGAATTTC 57.691 30.769 10.72 0.00 32.35 2.17
468 471 7.930325 TGTGCCAAATTTTGACTATGAATTTCA 59.070 29.630 10.72 0.75 32.35 2.69
469 472 8.938906 GTGCCAAATTTTGACTATGAATTTCAT 58.061 29.630 15.78 15.78 40.72 2.57
470 473 9.504708 TGCCAAATTTTGACTATGAATTTCATT 57.495 25.926 16.62 0.30 38.26 2.57
494 497 8.877808 TTAACAAAATGTTAATGCATGTCACA 57.122 26.923 0.00 4.00 44.93 3.58
495 498 7.783090 AACAAAATGTTAATGCATGTCACAA 57.217 28.000 0.00 0.00 39.09 3.33
496 499 7.783090 ACAAAATGTTAATGCATGTCACAAA 57.217 28.000 0.00 0.00 0.00 2.83
497 500 8.206325 ACAAAATGTTAATGCATGTCACAAAA 57.794 26.923 0.00 0.00 0.00 2.44
498 501 8.671921 ACAAAATGTTAATGCATGTCACAAAAA 58.328 25.926 0.00 0.00 0.00 1.94
599 602 8.798153 CAATTAAATCTATCGTCAAGTTTTGGC 58.202 33.333 0.00 0.00 0.00 4.52
600 603 5.957842 AAATCTATCGTCAAGTTTTGGCA 57.042 34.783 0.00 0.00 34.15 4.92
601 604 4.946784 ATCTATCGTCAAGTTTTGGCAC 57.053 40.909 0.00 0.00 34.15 5.01
602 605 3.734463 TCTATCGTCAAGTTTTGGCACA 58.266 40.909 0.00 0.00 34.15 4.57
616 619 3.334583 TGGCACAAACTATGAGAGGAC 57.665 47.619 0.00 0.00 31.92 3.85
617 620 2.027192 TGGCACAAACTATGAGAGGACC 60.027 50.000 0.00 0.00 31.92 4.46
618 621 2.027192 GGCACAAACTATGAGAGGACCA 60.027 50.000 0.00 0.00 0.00 4.02
619 622 3.559171 GGCACAAACTATGAGAGGACCAA 60.559 47.826 0.00 0.00 0.00 3.67
620 623 4.265073 GCACAAACTATGAGAGGACCAAT 58.735 43.478 0.00 0.00 0.00 3.16
621 624 5.428253 GCACAAACTATGAGAGGACCAATA 58.572 41.667 0.00 0.00 0.00 1.90
622 625 5.880332 GCACAAACTATGAGAGGACCAATAA 59.120 40.000 0.00 0.00 0.00 1.40
623 626 6.374333 GCACAAACTATGAGAGGACCAATAAA 59.626 38.462 0.00 0.00 0.00 1.40
624 627 7.067494 GCACAAACTATGAGAGGACCAATAAAT 59.933 37.037 0.00 0.00 0.00 1.40
625 628 8.616076 CACAAACTATGAGAGGACCAATAAATC 58.384 37.037 0.00 0.00 0.00 2.17
626 629 8.328758 ACAAACTATGAGAGGACCAATAAATCA 58.671 33.333 0.00 0.00 0.00 2.57
627 630 8.616076 CAAACTATGAGAGGACCAATAAATCAC 58.384 37.037 0.00 0.00 0.00 3.06
628 631 6.516718 ACTATGAGAGGACCAATAAATCACG 58.483 40.000 0.00 0.00 0.00 4.35
629 632 5.614324 ATGAGAGGACCAATAAATCACGA 57.386 39.130 0.00 0.00 0.00 4.35
630 633 4.755411 TGAGAGGACCAATAAATCACGAC 58.245 43.478 0.00 0.00 0.00 4.34
631 634 3.782046 AGAGGACCAATAAATCACGACG 58.218 45.455 0.00 0.00 0.00 5.12
675 678 5.290158 CGCTTGGAAACGTACACAATAGTAT 59.710 40.000 0.00 0.00 0.00 2.12
679 682 9.362539 CTTGGAAACGTACACAATAGTATTACT 57.637 33.333 1.30 1.30 0.00 2.24
726 729 4.024048 ACAAAGTCACCATCGTTTTGCTAG 60.024 41.667 0.00 0.00 33.28 3.42
825 832 3.119743 GCAGCTGCATCAATAACAGTGAA 60.120 43.478 33.36 0.00 41.59 3.18
846 853 3.813443 AGATCACCCCGATTTCAATGAG 58.187 45.455 0.00 0.00 33.17 2.90
849 856 1.665679 CACCCCGATTTCAATGAGTCG 59.334 52.381 11.45 11.45 0.00 4.18
880 887 9.273016 AGACACGAATCTTTTTAATCTTTCTCA 57.727 29.630 0.00 0.00 0.00 3.27
940 1002 4.025360 CCATTTGGATCAATCAGTTCCCA 58.975 43.478 0.00 0.00 35.58 4.37
943 1005 6.352394 CCATTTGGATCAATCAGTTCCCATTT 60.352 38.462 0.00 0.00 35.58 2.32
947 1009 4.584743 GGATCAATCAGTTCCCATTTACCC 59.415 45.833 0.00 0.00 31.08 3.69
956 1018 8.584326 TCAGTTCCCATTTACCCCTATAAATA 57.416 34.615 0.00 0.00 33.84 1.40
968 1030 7.324388 ACCCCTATAAATATCGACATCCAAA 57.676 36.000 0.00 0.00 0.00 3.28
971 1033 7.883311 CCCCTATAAATATCGACATCCAAACTT 59.117 37.037 0.00 0.00 0.00 2.66
983 1045 2.054799 TCCAAACTTGTCTAGCACCCT 58.945 47.619 0.00 0.00 0.00 4.34
984 1046 3.244582 TCCAAACTTGTCTAGCACCCTA 58.755 45.455 0.00 0.00 0.00 3.53
1122 1185 3.206150 TGAAGACCTCAACAACAAGAGC 58.794 45.455 0.00 0.00 0.00 4.09
1188 1251 3.716195 CTCCATGGTGACCGGCCA 61.716 66.667 12.58 0.10 40.68 5.36
1227 1290 2.287069 CCTCATCGTCGAGTATGTGGAC 60.287 54.545 17.28 0.00 38.46 4.02
1233 1296 1.065928 CGAGTATGTGGACGAGGCC 59.934 63.158 0.00 0.00 0.00 5.19
1317 1380 3.056607 CCCAATTCATCGAGCAAAAGGTT 60.057 43.478 0.00 0.00 0.00 3.50
1320 1383 3.641437 TTCATCGAGCAAAAGGTTTGG 57.359 42.857 3.12 0.00 0.00 3.28
1334 1397 5.836821 AAGGTTTGGTTCTTCTCAAGTTC 57.163 39.130 0.00 0.00 0.00 3.01
1344 1407 3.005897 TCTTCTCAAGTTCAAGTCCCTCG 59.994 47.826 0.00 0.00 0.00 4.63
1345 1408 2.317040 TCTCAAGTTCAAGTCCCTCGT 58.683 47.619 0.00 0.00 0.00 4.18
1356 1419 5.295152 TCAAGTCCCTCGTTTTCTTTAGAC 58.705 41.667 0.00 0.00 0.00 2.59
1406 1469 2.223641 GGATCGACCTTGCGTATGTACA 60.224 50.000 0.00 0.00 35.41 2.90
1417 1480 1.860950 CGTATGTACATGCAGTGCTCC 59.139 52.381 21.64 0.11 33.54 4.70
1442 1505 3.918253 TTCTGGATGGCGGTGTGGC 62.918 63.158 0.00 0.00 45.12 5.01
1507 1570 2.124819 AATCTGGCGCTGCTGGAG 60.125 61.111 7.64 0.00 0.00 3.86
1604 1667 4.819761 TGCTGGGCGTGATCGAGC 62.820 66.667 0.00 0.00 39.71 5.03
1767 1830 1.351430 CGAATCAAGCTCGCCGTCAA 61.351 55.000 0.00 0.00 0.00 3.18
1814 1877 2.026641 CAGTTTGGGGCATCGATCAAT 58.973 47.619 0.00 0.00 0.00 2.57
1821 1884 2.221169 GGGCATCGATCAATACAGCAA 58.779 47.619 0.00 0.00 0.00 3.91
1827 1890 1.926510 CGATCAATACAGCAAGCGTCA 59.073 47.619 0.00 0.00 0.00 4.35
1878 1951 4.329296 TTTGTCTGTTACGTGTGTGTTG 57.671 40.909 0.00 0.00 0.00 3.33
1889 1962 0.179006 TGTGTGTTGCCTATGGTGCA 60.179 50.000 0.00 0.00 36.84 4.57
1890 1963 0.958091 GTGTGTTGCCTATGGTGCAA 59.042 50.000 0.00 1.76 45.83 4.08
2083 2158 7.521871 TTGGGCAATTGAGCAAAATAAAATT 57.478 28.000 10.34 0.00 35.83 1.82
2408 2483 8.593492 AAATTGCTACTTGAAAAAGGAATGTC 57.407 30.769 0.00 0.00 32.47 3.06
2416 2491 2.781681 AAAAGGAATGTCGGATCGGT 57.218 45.000 0.00 0.00 0.00 4.69
2428 2503 2.293955 TCGGATCGGTAATTGTATGCGA 59.706 45.455 0.00 0.00 39.39 5.10
2442 2517 1.675972 TGCGAGCCGGGCATAAAAA 60.676 52.632 23.09 0.00 35.04 1.94
2473 2548 3.852939 GCAAAGTGTTCAATCACGATGCA 60.853 43.478 17.59 0.00 45.05 3.96
2474 2549 4.289342 CAAAGTGTTCAATCACGATGCAA 58.711 39.130 0.00 0.00 42.40 4.08
2475 2550 3.818961 AGTGTTCAATCACGATGCAAG 57.181 42.857 0.00 0.00 42.40 4.01
2476 2551 3.141398 AGTGTTCAATCACGATGCAAGT 58.859 40.909 0.00 0.00 42.40 3.16
2477 2552 4.314961 AGTGTTCAATCACGATGCAAGTA 58.685 39.130 0.00 0.00 42.40 2.24
2478 2553 4.152402 AGTGTTCAATCACGATGCAAGTAC 59.848 41.667 0.00 0.00 42.40 2.73
2479 2554 4.152402 GTGTTCAATCACGATGCAAGTACT 59.848 41.667 0.00 0.00 0.00 2.73
2480 2555 4.388773 TGTTCAATCACGATGCAAGTACTC 59.611 41.667 0.00 0.00 0.00 2.59
2481 2556 3.521560 TCAATCACGATGCAAGTACTCC 58.478 45.455 0.00 0.00 0.00 3.85
2482 2557 2.604046 ATCACGATGCAAGTACTCCC 57.396 50.000 0.00 0.00 0.00 4.30
2483 2558 1.557099 TCACGATGCAAGTACTCCCT 58.443 50.000 0.00 0.00 0.00 4.20
2484 2559 1.476891 TCACGATGCAAGTACTCCCTC 59.523 52.381 0.00 0.00 0.00 4.30
2485 2560 0.824759 ACGATGCAAGTACTCCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
2486 2561 0.249073 CGATGCAAGTACTCCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
2487 2562 0.824759 GATGCAAGTACTCCCTCCGT 59.175 55.000 0.00 0.00 0.00 4.69
2488 2563 1.207329 GATGCAAGTACTCCCTCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
2489 2564 0.606604 TGCAAGTACTCCCTCCGTTC 59.393 55.000 0.00 0.00 0.00 3.95
2490 2565 0.108281 GCAAGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
2491 2566 1.263356 CAAGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
2492 2567 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
2493 2568 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2494 2569 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2495 2570 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2496 2571 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2497 2572 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2498 2573 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2499 2574 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2500 2575 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2501 2576 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2502 2577 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2503 2578 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2504 2579 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2505 2580 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
2506 2581 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
2507 2582 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
2508 2583 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
2509 2584 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
2510 2585 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
2511 2586 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
2512 2587 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
2513 2588 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
2514 2589 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
2515 2590 4.642445 TTACTCGTCGCTGAAATGGATA 57.358 40.909 0.00 0.00 0.00 2.59
2516 2591 3.735237 ACTCGTCGCTGAAATGGATAT 57.265 42.857 0.00 0.00 0.00 1.63
2517 2592 4.848562 ACTCGTCGCTGAAATGGATATA 57.151 40.909 0.00 0.00 0.00 0.86
2518 2593 5.392767 ACTCGTCGCTGAAATGGATATAT 57.607 39.130 0.00 0.00 0.00 0.86
2519 2594 5.784177 ACTCGTCGCTGAAATGGATATATT 58.216 37.500 0.00 0.00 0.00 1.28
2520 2595 6.223852 ACTCGTCGCTGAAATGGATATATTT 58.776 36.000 0.00 0.00 33.19 1.40
2521 2596 7.375834 ACTCGTCGCTGAAATGGATATATTTA 58.624 34.615 0.00 0.00 30.78 1.40
2522 2597 7.870954 ACTCGTCGCTGAAATGGATATATTTAA 59.129 33.333 0.00 0.00 30.78 1.52
2523 2598 8.596271 TCGTCGCTGAAATGGATATATTTAAA 57.404 30.769 0.00 0.00 30.78 1.52
2524 2599 9.047371 TCGTCGCTGAAATGGATATATTTAAAA 57.953 29.630 0.00 0.00 30.78 1.52
2525 2600 9.825972 CGTCGCTGAAATGGATATATTTAAAAT 57.174 29.630 0.00 0.00 30.78 1.82
2556 2631 7.867305 ACATCTAGATACATCCATAGGTACG 57.133 40.000 4.54 0.00 0.00 3.67
2557 2632 7.631007 ACATCTAGATACATCCATAGGTACGA 58.369 38.462 4.54 0.00 0.00 3.43
2558 2633 7.553402 ACATCTAGATACATCCATAGGTACGAC 59.447 40.741 4.54 0.00 0.00 4.34
2559 2634 7.012661 TCTAGATACATCCATAGGTACGACA 57.987 40.000 0.00 0.00 0.00 4.35
2560 2635 7.455891 TCTAGATACATCCATAGGTACGACAA 58.544 38.462 0.00 0.00 0.00 3.18
2561 2636 6.576662 AGATACATCCATAGGTACGACAAG 57.423 41.667 0.00 0.00 0.00 3.16
2562 2637 6.069331 AGATACATCCATAGGTACGACAAGT 58.931 40.000 0.00 0.00 0.00 3.16
2563 2638 7.229308 AGATACATCCATAGGTACGACAAGTA 58.771 38.462 0.00 0.00 0.00 2.24
2564 2639 7.722728 AGATACATCCATAGGTACGACAAGTAA 59.277 37.037 0.00 0.00 37.02 2.24
2565 2640 6.726490 ACATCCATAGGTACGACAAGTAAT 57.274 37.500 0.00 0.00 37.02 1.89
2566 2641 7.120923 ACATCCATAGGTACGACAAGTAATT 57.879 36.000 0.00 0.00 37.02 1.40
2567 2642 7.208080 ACATCCATAGGTACGACAAGTAATTC 58.792 38.462 0.00 0.00 37.02 2.17
2568 2643 5.824429 TCCATAGGTACGACAAGTAATTCG 58.176 41.667 0.00 0.00 41.14 3.34
2569 2644 5.589855 TCCATAGGTACGACAAGTAATTCGA 59.410 40.000 0.00 0.00 38.63 3.71
2570 2645 6.095300 TCCATAGGTACGACAAGTAATTCGAA 59.905 38.462 0.00 0.00 38.63 3.71
2571 2646 6.753279 CCATAGGTACGACAAGTAATTCGAAA 59.247 38.462 0.00 0.00 38.63 3.46
2572 2647 7.253883 CCATAGGTACGACAAGTAATTCGAAAC 60.254 40.741 0.00 0.00 38.63 2.78
2573 2648 4.618489 AGGTACGACAAGTAATTCGAAACG 59.382 41.667 0.00 1.44 38.63 3.60
2574 2649 4.201523 GGTACGACAAGTAATTCGAAACGG 60.202 45.833 0.00 0.00 38.63 4.44
2575 2650 3.641648 ACGACAAGTAATTCGAAACGGA 58.358 40.909 0.00 0.00 38.63 4.69
2576 2651 3.671928 ACGACAAGTAATTCGAAACGGAG 59.328 43.478 0.00 0.00 38.63 4.63
2577 2652 3.060363 CGACAAGTAATTCGAAACGGAGG 59.940 47.826 0.00 0.00 37.43 4.30
2578 2653 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2627 2702 0.804989 GTCCTTCGGTTGCATTGGAG 59.195 55.000 0.00 0.00 0.00 3.86
2698 2773 1.827399 GCTCACTGGAAGGTCGGGAA 61.827 60.000 0.00 0.00 39.30 3.97
2699 2774 0.037232 CTCACTGGAAGGTCGGGAAC 60.037 60.000 0.00 0.00 39.30 3.62
2700 2775 0.471211 TCACTGGAAGGTCGGGAACT 60.471 55.000 0.00 0.00 39.30 3.01
2701 2776 0.037232 CACTGGAAGGTCGGGAACTC 60.037 60.000 0.00 0.00 39.30 3.01
2704 2779 2.577593 GAAGGTCGGGAACTCGGG 59.422 66.667 0.00 0.00 0.00 5.14
2705 2780 1.980772 GAAGGTCGGGAACTCGGGA 60.981 63.158 0.00 0.00 0.00 5.14
2706 2781 1.305887 AAGGTCGGGAACTCGGGAT 60.306 57.895 0.00 0.00 0.00 3.85
2707 2782 0.032813 AAGGTCGGGAACTCGGGATA 60.033 55.000 0.00 0.00 0.00 2.59
2708 2783 0.032813 AGGTCGGGAACTCGGGATAA 60.033 55.000 0.00 0.00 0.00 1.75
2709 2784 1.046204 GGTCGGGAACTCGGGATAAT 58.954 55.000 0.00 0.00 0.00 1.28
2710 2785 1.270147 GGTCGGGAACTCGGGATAATG 60.270 57.143 0.00 0.00 0.00 1.90
2711 2786 1.045407 TCGGGAACTCGGGATAATGG 58.955 55.000 0.00 0.00 0.00 3.16
2712 2787 1.045407 CGGGAACTCGGGATAATGGA 58.955 55.000 0.00 0.00 0.00 3.41
2713 2788 1.623811 CGGGAACTCGGGATAATGGAT 59.376 52.381 0.00 0.00 0.00 3.41
2714 2789 2.038557 CGGGAACTCGGGATAATGGATT 59.961 50.000 0.00 0.00 0.00 3.01
2715 2790 3.496160 CGGGAACTCGGGATAATGGATTT 60.496 47.826 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.831550 GCTTTTTGTTGGTAAAATTAATGGTCA 58.168 29.630 0.00 0.00 30.39 4.02
23 24 8.007152 CGCTTTTTGTTGGTAAAATTAATGGTC 58.993 33.333 0.00 0.00 30.39 4.02
24 25 7.711339 TCGCTTTTTGTTGGTAAAATTAATGGT 59.289 29.630 0.00 0.00 30.39 3.55
25 26 8.077836 TCGCTTTTTGTTGGTAAAATTAATGG 57.922 30.769 0.00 0.00 30.39 3.16
26 27 8.760569 ACTCGCTTTTTGTTGGTAAAATTAATG 58.239 29.630 0.00 0.00 30.39 1.90
27 28 8.880878 ACTCGCTTTTTGTTGGTAAAATTAAT 57.119 26.923 0.00 0.00 30.39 1.40
28 29 8.705048 AACTCGCTTTTTGTTGGTAAAATTAA 57.295 26.923 0.00 0.00 30.39 1.40
29 30 9.968870 ATAACTCGCTTTTTGTTGGTAAAATTA 57.031 25.926 0.00 0.00 30.39 1.40
30 31 8.880878 ATAACTCGCTTTTTGTTGGTAAAATT 57.119 26.923 0.00 0.00 30.39 1.82
32 33 9.400638 CATATAACTCGCTTTTTGTTGGTAAAA 57.599 29.630 0.00 0.00 0.00 1.52
33 34 7.539366 GCATATAACTCGCTTTTTGTTGGTAAA 59.461 33.333 0.00 0.00 0.00 2.01
34 35 7.024768 GCATATAACTCGCTTTTTGTTGGTAA 58.975 34.615 0.00 0.00 0.00 2.85
35 36 6.403855 GGCATATAACTCGCTTTTTGTTGGTA 60.404 38.462 0.00 0.00 0.00 3.25
36 37 5.399013 GCATATAACTCGCTTTTTGTTGGT 58.601 37.500 0.00 0.00 0.00 3.67
37 38 4.798387 GGCATATAACTCGCTTTTTGTTGG 59.202 41.667 0.00 0.00 0.00 3.77
38 39 5.286082 GTGGCATATAACTCGCTTTTTGTTG 59.714 40.000 0.00 0.00 0.00 3.33
39 40 5.048364 TGTGGCATATAACTCGCTTTTTGTT 60.048 36.000 0.00 0.00 0.00 2.83
40 41 4.457603 TGTGGCATATAACTCGCTTTTTGT 59.542 37.500 0.00 0.00 0.00 2.83
41 42 4.980590 TGTGGCATATAACTCGCTTTTTG 58.019 39.130 0.00 0.00 0.00 2.44
42 43 5.637006 TTGTGGCATATAACTCGCTTTTT 57.363 34.783 0.00 0.00 0.00 1.94
43 44 5.637006 TTTGTGGCATATAACTCGCTTTT 57.363 34.783 0.00 0.00 0.00 2.27
44 45 5.637006 TTTTGTGGCATATAACTCGCTTT 57.363 34.783 0.00 0.00 0.00 3.51
45 46 5.183140 ACTTTTTGTGGCATATAACTCGCTT 59.817 36.000 0.00 0.00 0.00 4.68
46 47 4.700213 ACTTTTTGTGGCATATAACTCGCT 59.300 37.500 0.00 0.00 0.00 4.93
47 48 4.981794 ACTTTTTGTGGCATATAACTCGC 58.018 39.130 0.00 0.00 0.00 5.03
48 49 6.632834 GCATACTTTTTGTGGCATATAACTCG 59.367 38.462 0.00 0.00 32.77 4.18
49 50 6.918022 GGCATACTTTTTGTGGCATATAACTC 59.082 38.462 0.00 0.00 38.21 3.01
50 51 6.379703 TGGCATACTTTTTGTGGCATATAACT 59.620 34.615 0.00 0.00 42.48 2.24
51 52 6.568869 TGGCATACTTTTTGTGGCATATAAC 58.431 36.000 0.00 0.00 42.48 1.89
52 53 6.782082 TGGCATACTTTTTGTGGCATATAA 57.218 33.333 0.00 0.00 42.48 0.98
58 59 3.002102 CCAATGGCATACTTTTTGTGGC 58.998 45.455 0.00 0.00 38.72 5.01
59 60 4.533919 TCCAATGGCATACTTTTTGTGG 57.466 40.909 0.00 1.94 0.00 4.17
60 61 4.330620 GCATCCAATGGCATACTTTTTGTG 59.669 41.667 0.00 0.00 0.00 3.33
61 62 4.020396 TGCATCCAATGGCATACTTTTTGT 60.020 37.500 0.00 0.00 34.58 2.83
62 63 4.330620 GTGCATCCAATGGCATACTTTTTG 59.669 41.667 0.00 0.00 42.75 2.44
63 64 4.020396 TGTGCATCCAATGGCATACTTTTT 60.020 37.500 0.00 0.00 42.75 1.94
64 65 3.514706 TGTGCATCCAATGGCATACTTTT 59.485 39.130 0.00 0.00 42.75 2.27
65 66 3.098377 TGTGCATCCAATGGCATACTTT 58.902 40.909 0.00 0.00 42.75 2.66
66 67 2.737544 TGTGCATCCAATGGCATACTT 58.262 42.857 0.00 0.00 42.75 2.24
67 68 2.440517 TGTGCATCCAATGGCATACT 57.559 45.000 0.00 0.00 42.75 2.12
68 69 3.738830 AATGTGCATCCAATGGCATAC 57.261 42.857 0.00 0.00 42.75 2.39
69 70 3.705072 TCAAATGTGCATCCAATGGCATA 59.295 39.130 0.00 0.00 42.75 3.14
70 71 2.502130 TCAAATGTGCATCCAATGGCAT 59.498 40.909 0.00 0.00 42.75 4.40
71 72 1.900486 TCAAATGTGCATCCAATGGCA 59.100 42.857 0.00 0.00 37.77 4.92
72 73 2.676632 TCAAATGTGCATCCAATGGC 57.323 45.000 0.00 0.00 0.00 4.40
73 74 4.823157 TCTTTCAAATGTGCATCCAATGG 58.177 39.130 0.00 0.00 0.00 3.16
74 75 6.978343 ATTCTTTCAAATGTGCATCCAATG 57.022 33.333 0.00 0.00 0.00 2.82
75 76 7.989416 AAATTCTTTCAAATGTGCATCCAAT 57.011 28.000 0.00 0.00 0.00 3.16
76 77 7.041235 GGAAAATTCTTTCAAATGTGCATCCAA 60.041 33.333 0.00 0.00 42.44 3.53
77 78 6.427547 GGAAAATTCTTTCAAATGTGCATCCA 59.572 34.615 0.00 0.00 42.44 3.41
78 79 6.401367 CGGAAAATTCTTTCAAATGTGCATCC 60.401 38.462 0.00 0.00 42.44 3.51
79 80 6.365789 TCGGAAAATTCTTTCAAATGTGCATC 59.634 34.615 0.00 0.00 42.44 3.91
80 81 6.222389 TCGGAAAATTCTTTCAAATGTGCAT 58.778 32.000 0.00 0.00 42.44 3.96
81 82 5.595885 TCGGAAAATTCTTTCAAATGTGCA 58.404 33.333 0.50 0.00 42.44 4.57
82 83 6.365789 TCATCGGAAAATTCTTTCAAATGTGC 59.634 34.615 0.50 0.00 42.44 4.57
83 84 7.872163 TCATCGGAAAATTCTTTCAAATGTG 57.128 32.000 0.50 0.00 42.44 3.21
169 170 8.740906 TGTATACAAGACCACTTTGTTTTTCAA 58.259 29.630 2.20 0.00 33.70 2.69
170 171 8.282455 TGTATACAAGACCACTTTGTTTTTCA 57.718 30.769 2.20 0.00 33.70 2.69
185 186 5.964477 ACTCCCTCCATTTCTGTATACAAGA 59.036 40.000 7.06 4.19 0.00 3.02
268 269 8.528090 AAATGGTTATTTCTCGGTTAACCGCG 62.528 42.308 36.63 31.90 44.55 6.46
269 270 5.392272 AAATGGTTATTTCTCGGTTAACCGC 60.392 40.000 36.63 21.83 44.55 5.68
293 294 4.221482 AGCGGCTATGATCATCAATCTACA 59.779 41.667 12.53 0.00 35.24 2.74
294 295 4.753233 AGCGGCTATGATCATCAATCTAC 58.247 43.478 12.53 0.00 35.24 2.59
300 301 2.029560 GTGAGAGCGGCTATGATCATCA 60.030 50.000 12.53 0.00 0.00 3.07
319 321 9.254133 CTGACATAGAAGTATGGATAGTTTGTG 57.746 37.037 0.00 0.00 40.53 3.33
325 327 7.928167 TGTTTGCTGACATAGAAGTATGGATAG 59.072 37.037 0.00 0.00 40.53 2.08
329 332 6.741992 TTGTTTGCTGACATAGAAGTATGG 57.258 37.500 0.00 0.00 40.53 2.74
386 389 7.828223 GGAGGTAGTAGATCGTGGATATCTTTA 59.172 40.741 2.05 0.00 35.36 1.85
387 390 6.660094 GGAGGTAGTAGATCGTGGATATCTTT 59.340 42.308 2.05 0.00 35.36 2.52
390 393 4.571580 CGGAGGTAGTAGATCGTGGATATC 59.428 50.000 0.00 0.00 0.00 1.63
392 395 3.326006 ACGGAGGTAGTAGATCGTGGATA 59.674 47.826 0.00 0.00 0.00 2.59
407 410 1.982958 ACAATAAACCAGGACGGAGGT 59.017 47.619 0.00 0.00 40.61 3.85
408 411 2.629051 GACAATAAACCAGGACGGAGG 58.371 52.381 0.00 0.00 38.63 4.30
411 414 1.680860 GGGGACAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
412 415 1.680860 GGGGGACAATAAACCAGGACG 60.681 57.143 0.00 0.00 0.00 4.79
416 419 4.586306 ACTAAGGGGGACAATAAACCAG 57.414 45.455 0.00 0.00 0.00 4.00
417 420 6.661740 AATACTAAGGGGGACAATAAACCA 57.338 37.500 0.00 0.00 0.00 3.67
418 421 7.398047 ACAAAATACTAAGGGGGACAATAAACC 59.602 37.037 0.00 0.00 0.00 3.27
419 422 8.248253 CACAAAATACTAAGGGGGACAATAAAC 58.752 37.037 0.00 0.00 0.00 2.01
420 423 7.093684 GCACAAAATACTAAGGGGGACAATAAA 60.094 37.037 0.00 0.00 0.00 1.40
421 424 6.378848 GCACAAAATACTAAGGGGGACAATAA 59.621 38.462 0.00 0.00 0.00 1.40
422 425 5.889289 GCACAAAATACTAAGGGGGACAATA 59.111 40.000 0.00 0.00 0.00 1.90
423 426 4.709886 GCACAAAATACTAAGGGGGACAAT 59.290 41.667 0.00 0.00 0.00 2.71
424 427 4.083565 GCACAAAATACTAAGGGGGACAA 58.916 43.478 0.00 0.00 0.00 3.18
425 428 3.562609 GGCACAAAATACTAAGGGGGACA 60.563 47.826 0.00 0.00 0.00 4.02
426 429 3.021695 GGCACAAAATACTAAGGGGGAC 58.978 50.000 0.00 0.00 0.00 4.46
427 430 2.650322 TGGCACAAAATACTAAGGGGGA 59.350 45.455 0.00 0.00 31.92 4.81
443 446 8.309163 TGAAATTCATAGTCAAAATTTGGCAC 57.691 30.769 13.11 1.41 37.85 5.01
444 447 9.504708 AATGAAATTCATAGTCAAAATTTGGCA 57.495 25.926 13.11 0.00 35.76 4.92
470 473 8.877808 TTGTGACATGCATTAACATTTTGTTA 57.122 26.923 0.00 0.00 41.45 2.41
471 474 7.783090 TTGTGACATGCATTAACATTTTGTT 57.217 28.000 0.00 0.00 43.88 2.83
472 475 7.783090 TTTGTGACATGCATTAACATTTTGT 57.217 28.000 0.00 0.00 0.00 2.83
573 576 8.798153 GCCAAAACTTGACGATAGATTTAATTG 58.202 33.333 0.00 0.00 41.38 2.32
574 577 8.519526 TGCCAAAACTTGACGATAGATTTAATT 58.480 29.630 0.00 0.00 41.38 1.40
575 578 7.968405 GTGCCAAAACTTGACGATAGATTTAAT 59.032 33.333 0.00 0.00 41.38 1.40
576 579 7.041030 TGTGCCAAAACTTGACGATAGATTTAA 60.041 33.333 0.00 0.00 41.38 1.52
577 580 6.428465 TGTGCCAAAACTTGACGATAGATTTA 59.572 34.615 0.00 0.00 41.38 1.40
578 581 5.240623 TGTGCCAAAACTTGACGATAGATTT 59.759 36.000 0.00 0.00 41.38 2.17
579 582 4.759693 TGTGCCAAAACTTGACGATAGATT 59.240 37.500 0.00 0.00 41.38 2.40
580 583 4.323417 TGTGCCAAAACTTGACGATAGAT 58.677 39.130 0.00 0.00 41.38 1.98
581 584 3.734463 TGTGCCAAAACTTGACGATAGA 58.266 40.909 0.00 0.00 41.38 1.98
582 585 4.481930 TTGTGCCAAAACTTGACGATAG 57.518 40.909 0.00 0.00 46.19 2.08
583 586 4.336993 AGTTTGTGCCAAAACTTGACGATA 59.663 37.500 7.79 0.00 45.84 2.92
584 587 3.130340 AGTTTGTGCCAAAACTTGACGAT 59.870 39.130 7.79 0.00 45.84 3.73
585 588 2.490115 AGTTTGTGCCAAAACTTGACGA 59.510 40.909 7.79 0.00 45.84 4.20
586 589 2.874849 AGTTTGTGCCAAAACTTGACG 58.125 42.857 7.79 0.00 45.84 4.35
587 590 5.587289 TCATAGTTTGTGCCAAAACTTGAC 58.413 37.500 16.32 0.00 45.84 3.18
588 591 5.592282 TCTCATAGTTTGTGCCAAAACTTGA 59.408 36.000 16.32 16.28 45.84 3.02
589 592 5.830912 TCTCATAGTTTGTGCCAAAACTTG 58.169 37.500 16.32 13.94 45.84 3.16
590 593 5.010012 CCTCTCATAGTTTGTGCCAAAACTT 59.990 40.000 16.32 5.25 45.84 2.66
592 595 4.518970 TCCTCTCATAGTTTGTGCCAAAAC 59.481 41.667 3.73 3.73 39.80 2.43
593 596 4.518970 GTCCTCTCATAGTTTGTGCCAAAA 59.481 41.667 2.47 0.00 0.00 2.44
594 597 4.072131 GTCCTCTCATAGTTTGTGCCAAA 58.928 43.478 0.00 0.00 0.00 3.28
595 598 3.559171 GGTCCTCTCATAGTTTGTGCCAA 60.559 47.826 0.00 0.00 0.00 4.52
596 599 2.027192 GGTCCTCTCATAGTTTGTGCCA 60.027 50.000 0.00 0.00 0.00 4.92
597 600 2.027192 TGGTCCTCTCATAGTTTGTGCC 60.027 50.000 0.00 0.00 0.00 5.01
598 601 3.334583 TGGTCCTCTCATAGTTTGTGC 57.665 47.619 0.00 0.00 0.00 4.57
599 602 7.921786 TTTATTGGTCCTCTCATAGTTTGTG 57.078 36.000 0.00 0.00 0.00 3.33
600 603 8.328758 TGATTTATTGGTCCTCTCATAGTTTGT 58.671 33.333 0.00 0.00 0.00 2.83
601 604 8.616076 GTGATTTATTGGTCCTCTCATAGTTTG 58.384 37.037 0.00 0.00 0.00 2.93
602 605 7.495934 CGTGATTTATTGGTCCTCTCATAGTTT 59.504 37.037 0.00 0.00 0.00 2.66
603 606 6.986817 CGTGATTTATTGGTCCTCTCATAGTT 59.013 38.462 0.00 0.00 0.00 2.24
604 607 6.323996 TCGTGATTTATTGGTCCTCTCATAGT 59.676 38.462 0.00 0.00 0.00 2.12
605 608 6.642950 GTCGTGATTTATTGGTCCTCTCATAG 59.357 42.308 0.00 0.00 0.00 2.23
606 609 6.513180 GTCGTGATTTATTGGTCCTCTCATA 58.487 40.000 0.00 0.00 0.00 2.15
607 610 5.360591 GTCGTGATTTATTGGTCCTCTCAT 58.639 41.667 0.00 0.00 0.00 2.90
608 611 4.676986 CGTCGTGATTTATTGGTCCTCTCA 60.677 45.833 0.00 0.00 0.00 3.27
609 612 3.797256 CGTCGTGATTTATTGGTCCTCTC 59.203 47.826 0.00 0.00 0.00 3.20
610 613 3.430374 CCGTCGTGATTTATTGGTCCTCT 60.430 47.826 0.00 0.00 0.00 3.69
611 614 2.864343 CCGTCGTGATTTATTGGTCCTC 59.136 50.000 0.00 0.00 0.00 3.71
612 615 2.498481 TCCGTCGTGATTTATTGGTCCT 59.502 45.455 0.00 0.00 0.00 3.85
613 616 2.606272 GTCCGTCGTGATTTATTGGTCC 59.394 50.000 0.00 0.00 0.00 4.46
614 617 3.518590 AGTCCGTCGTGATTTATTGGTC 58.481 45.455 0.00 0.00 0.00 4.02
615 618 3.604875 AGTCCGTCGTGATTTATTGGT 57.395 42.857 0.00 0.00 0.00 3.67
616 619 3.000078 CGAAGTCCGTCGTGATTTATTGG 60.000 47.826 0.00 0.00 36.26 3.16
617 620 3.000078 CCGAAGTCCGTCGTGATTTATTG 60.000 47.826 2.23 0.00 39.43 1.90
618 621 3.119388 TCCGAAGTCCGTCGTGATTTATT 60.119 43.478 2.23 0.00 39.43 1.40
619 622 2.424601 TCCGAAGTCCGTCGTGATTTAT 59.575 45.455 2.23 0.00 39.43 1.40
620 623 1.811965 TCCGAAGTCCGTCGTGATTTA 59.188 47.619 2.23 0.00 39.43 1.40
621 624 0.599558 TCCGAAGTCCGTCGTGATTT 59.400 50.000 2.23 0.00 39.43 2.17
622 625 0.815734 ATCCGAAGTCCGTCGTGATT 59.184 50.000 2.23 0.00 39.43 2.57
623 626 0.100682 CATCCGAAGTCCGTCGTGAT 59.899 55.000 2.23 2.45 39.43 3.06
624 627 1.504900 CATCCGAAGTCCGTCGTGA 59.495 57.895 2.23 0.39 39.43 4.35
625 628 2.158959 GCATCCGAAGTCCGTCGTG 61.159 63.158 2.23 0.00 39.43 4.35
626 629 2.181021 GCATCCGAAGTCCGTCGT 59.819 61.111 2.23 0.00 39.43 4.34
627 630 2.582498 GGCATCCGAAGTCCGTCG 60.582 66.667 0.00 0.00 40.77 5.12
628 631 0.462047 AATGGCATCCGAAGTCCGTC 60.462 55.000 0.00 0.00 36.31 4.79
629 632 0.744414 CAATGGCATCCGAAGTCCGT 60.744 55.000 0.00 0.00 36.31 4.69
630 633 2.016961 CAATGGCATCCGAAGTCCG 58.983 57.895 0.00 0.00 38.18 4.79
631 634 0.749454 AGCAATGGCATCCGAAGTCC 60.749 55.000 0.00 0.00 44.61 3.85
679 682 9.237187 TGTTTGACATGCCTATCAATTAAAGTA 57.763 29.630 0.00 0.00 34.87 2.24
682 685 9.421806 CTTTGTTTGACATGCCTATCAATTAAA 57.578 29.630 0.00 0.39 34.87 1.52
693 696 2.100584 TGGTGACTTTGTTTGACATGCC 59.899 45.455 0.00 0.00 0.00 4.40
740 743 3.254629 GCAGTGGGCAGATCAAAGA 57.745 52.632 0.00 0.00 43.97 2.52
790 797 0.250209 CAGCTGCAGGTCAGACAACT 60.250 55.000 17.16 0.00 45.72 3.16
825 832 3.200825 ACTCATTGAAATCGGGGTGATCT 59.799 43.478 0.00 0.00 35.84 2.75
846 853 5.517037 AAAAGATTCGTGTCTCAATCGAC 57.483 39.130 0.00 0.00 34.68 4.20
880 887 9.950496 AGTCAAGTGTCTTATATCAGTCAAAAT 57.050 29.630 0.00 0.00 0.00 1.82
890 897 9.726438 AGTTTTGCTTAGTCAAGTGTCTTATAT 57.274 29.630 0.00 0.00 34.00 0.86
900 907 6.863126 CCAAATGGTAGTTTTGCTTAGTCAAG 59.137 38.462 0.00 0.00 33.66 3.02
901 908 6.547880 TCCAAATGGTAGTTTTGCTTAGTCAA 59.452 34.615 0.00 0.00 33.66 3.18
940 1002 9.053472 TGGATGTCGATATTTATAGGGGTAAAT 57.947 33.333 0.00 0.00 37.81 1.40
943 1005 8.316214 GTTTGGATGTCGATATTTATAGGGGTA 58.684 37.037 0.00 0.00 0.00 3.69
947 1009 9.273016 ACAAGTTTGGATGTCGATATTTATAGG 57.727 33.333 0.00 0.00 0.00 2.57
968 1030 1.938585 TGCTAGGGTGCTAGACAAGT 58.061 50.000 0.00 0.00 0.00 3.16
971 1033 0.537188 GCTTGCTAGGGTGCTAGACA 59.463 55.000 0.00 0.00 37.87 3.41
983 1045 2.221169 CCATTGCCGATAAGCTTGCTA 58.779 47.619 9.86 0.78 0.00 3.49
984 1046 1.027357 CCATTGCCGATAAGCTTGCT 58.973 50.000 9.86 0.00 0.00 3.91
1074 1137 1.521681 CTCGAATGGGACGCCCTTC 60.522 63.158 14.76 13.47 45.70 3.46
1317 1380 4.881850 GGACTTGAACTTGAGAAGAACCAA 59.118 41.667 0.00 0.00 0.00 3.67
1320 1383 4.709250 AGGGACTTGAACTTGAGAAGAAC 58.291 43.478 0.00 0.00 27.25 3.01
1344 1407 7.352739 CCATGTACACAGTGTCTAAAGAAAAC 58.647 38.462 10.23 0.00 0.00 2.43
1345 1408 6.017440 GCCATGTACACAGTGTCTAAAGAAAA 60.017 38.462 10.23 0.00 0.00 2.29
1356 1419 2.398554 GCCGGCCATGTACACAGTG 61.399 63.158 18.11 0.00 0.00 3.66
1406 1469 4.790962 CGGCCTGGAGCACTGCAT 62.791 66.667 0.00 0.00 46.50 3.96
1417 1480 2.825836 GCCATCCAGAACGGCCTG 60.826 66.667 0.00 0.00 40.07 4.85
1460 1523 2.606519 CCTCACGAACCCCTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
1540 1603 2.602568 AGGTACCCAACGGCGTCT 60.603 61.111 15.17 0.07 0.00 4.18
1814 1877 2.378445 TATTGCTGACGCTTGCTGTA 57.622 45.000 0.00 0.00 36.97 2.74
1821 1884 7.821359 ACATAATCTGAATATATTGCTGACGCT 59.179 33.333 1.78 0.00 36.97 5.07
1845 1908 7.327518 CACGTAACAGACAAATCATACAGTACA 59.672 37.037 0.00 0.00 0.00 2.90
1868 1941 0.516877 CACCATAGGCAACACACACG 59.483 55.000 0.00 0.00 41.41 4.49
2083 2158 6.209361 TGTGCTTTTATTTTGTACAATCGCA 58.791 32.000 9.56 7.76 0.00 5.10
2160 2235 8.908786 ATCACTTATCAAAGTTTCACTTCTCA 57.091 30.769 0.00 0.00 43.60 3.27
2295 2370 5.535753 AGTAGAATTGCAAAAGCAAAGGT 57.464 34.783 1.71 0.00 33.20 3.50
2322 2397 6.549736 TCATTGTCCTTCTCCGACATAGATTA 59.450 38.462 0.00 0.00 39.86 1.75
2333 2408 8.360390 ACACTTTAAAAATCATTGTCCTTCTCC 58.640 33.333 0.00 0.00 0.00 3.71
2408 2483 2.661675 CTCGCATACAATTACCGATCCG 59.338 50.000 0.00 0.00 0.00 4.18
2416 2491 0.882927 GCCCGGCTCGCATACAATTA 60.883 55.000 0.71 0.00 0.00 1.40
2428 2503 0.039035 TGACCTTTTTATGCCCGGCT 59.961 50.000 11.61 0.00 0.00 5.52
2442 2517 3.120321 TGAACACTTTGCGTATGACCT 57.880 42.857 0.00 0.00 0.00 3.85
2473 2548 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
2474 2549 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2475 2550 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2476 2551 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2477 2552 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2478 2553 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2479 2554 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2480 2555 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2481 2556 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2482 2557 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2483 2558 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2484 2559 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2485 2560 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
2486 2561 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2487 2562 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2488 2563 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2489 2564 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2490 2565 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2491 2566 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2492 2567 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2493 2568 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2494 2569 3.520290 ATCCATTTCAGCGACGAGTAA 57.480 42.857 0.00 0.00 0.00 2.24
2495 2570 4.848562 ATATCCATTTCAGCGACGAGTA 57.151 40.909 0.00 0.00 0.00 2.59
2496 2571 3.735237 ATATCCATTTCAGCGACGAGT 57.265 42.857 0.00 0.00 0.00 4.18
2497 2572 6.712241 AAATATATCCATTTCAGCGACGAG 57.288 37.500 0.00 0.00 0.00 4.18
2498 2573 8.596271 TTTAAATATATCCATTTCAGCGACGA 57.404 30.769 0.00 0.00 30.84 4.20
2499 2574 9.825972 ATTTTAAATATATCCATTTCAGCGACG 57.174 29.630 0.00 0.00 30.84 5.12
2530 2605 9.562408 CGTACCTATGGATGTATCTAGATGTAT 57.438 37.037 15.79 9.11 0.00 2.29
2531 2606 8.765517 TCGTACCTATGGATGTATCTAGATGTA 58.234 37.037 15.79 4.44 0.00 2.29
2532 2607 7.553402 GTCGTACCTATGGATGTATCTAGATGT 59.447 40.741 15.79 3.16 0.00 3.06
2533 2608 7.553044 TGTCGTACCTATGGATGTATCTAGATG 59.447 40.741 15.79 0.00 0.00 2.90
2534 2609 7.631007 TGTCGTACCTATGGATGTATCTAGAT 58.369 38.462 10.73 10.73 0.00 1.98
2535 2610 7.012661 TGTCGTACCTATGGATGTATCTAGA 57.987 40.000 0.00 0.00 0.00 2.43
2536 2611 7.390996 ACTTGTCGTACCTATGGATGTATCTAG 59.609 40.741 0.00 0.00 0.00 2.43
2537 2612 7.229308 ACTTGTCGTACCTATGGATGTATCTA 58.771 38.462 0.00 0.00 0.00 1.98
2538 2613 6.069331 ACTTGTCGTACCTATGGATGTATCT 58.931 40.000 0.00 0.00 0.00 1.98
2539 2614 6.328641 ACTTGTCGTACCTATGGATGTATC 57.671 41.667 0.00 0.00 0.00 2.24
2540 2615 7.828508 TTACTTGTCGTACCTATGGATGTAT 57.171 36.000 0.00 0.00 0.00 2.29
2541 2616 7.828508 ATTACTTGTCGTACCTATGGATGTA 57.171 36.000 0.00 0.00 0.00 2.29
2542 2617 6.726490 ATTACTTGTCGTACCTATGGATGT 57.274 37.500 0.00 0.00 0.00 3.06
2543 2618 6.362551 CGAATTACTTGTCGTACCTATGGATG 59.637 42.308 0.00 0.00 32.61 3.51
2544 2619 6.263842 TCGAATTACTTGTCGTACCTATGGAT 59.736 38.462 0.00 0.00 38.41 3.41
2545 2620 5.589855 TCGAATTACTTGTCGTACCTATGGA 59.410 40.000 0.00 0.00 38.41 3.41
2546 2621 5.824429 TCGAATTACTTGTCGTACCTATGG 58.176 41.667 0.00 0.00 38.41 2.74
2547 2622 7.512579 CGTTTCGAATTACTTGTCGTACCTATG 60.513 40.741 0.00 0.00 38.41 2.23
2548 2623 6.470235 CGTTTCGAATTACTTGTCGTACCTAT 59.530 38.462 0.00 0.00 38.41 2.57
2549 2624 5.794945 CGTTTCGAATTACTTGTCGTACCTA 59.205 40.000 0.00 0.00 38.41 3.08
2550 2625 4.618489 CGTTTCGAATTACTTGTCGTACCT 59.382 41.667 0.00 0.00 38.41 3.08
2551 2626 4.201523 CCGTTTCGAATTACTTGTCGTACC 60.202 45.833 0.00 0.00 38.41 3.34
2552 2627 4.616802 TCCGTTTCGAATTACTTGTCGTAC 59.383 41.667 0.00 0.00 38.41 3.67
2553 2628 4.793071 TCCGTTTCGAATTACTTGTCGTA 58.207 39.130 0.00 0.00 38.41 3.43
2554 2629 3.641648 TCCGTTTCGAATTACTTGTCGT 58.358 40.909 0.00 0.00 38.41 4.34
2555 2630 3.060363 CCTCCGTTTCGAATTACTTGTCG 59.940 47.826 0.00 0.00 38.62 4.35
2556 2631 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2557 2632 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2558 2633 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2559 2634 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2560 2635 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2561 2636 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2562 2637 4.019174 AGTACTCCCTCCGTTTCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
2563 2638 2.830321 AGTACTCCCTCCGTTTCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
2564 2639 2.454538 AGTACTCCCTCCGTTTCGAAT 58.545 47.619 0.00 0.00 0.00 3.34
2565 2640 1.915141 AGTACTCCCTCCGTTTCGAA 58.085 50.000 0.00 0.00 0.00 3.71
2566 2641 2.636830 CTAGTACTCCCTCCGTTTCGA 58.363 52.381 0.00 0.00 0.00 3.71
2567 2642 1.065251 GCTAGTACTCCCTCCGTTTCG 59.935 57.143 0.00 0.00 0.00 3.46
2568 2643 1.408340 GGCTAGTACTCCCTCCGTTTC 59.592 57.143 0.00 0.00 0.00 2.78
2569 2644 1.272872 TGGCTAGTACTCCCTCCGTTT 60.273 52.381 0.00 0.00 0.00 3.60
2570 2645 0.333993 TGGCTAGTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
2571 2646 0.333993 TTGGCTAGTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
2572 2647 1.033574 CTTGGCTAGTACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
2573 2648 1.343176 ACCTTGGCTAGTACTCCCTCC 60.343 57.143 0.00 0.00 0.00 4.30
2574 2649 2.162264 ACCTTGGCTAGTACTCCCTC 57.838 55.000 0.00 0.00 0.00 4.30
2575 2650 2.091222 CCTACCTTGGCTAGTACTCCCT 60.091 54.545 0.00 0.00 0.00 4.20
2576 2651 2.091444 TCCTACCTTGGCTAGTACTCCC 60.091 54.545 0.00 1.65 0.00 4.30
2577 2652 3.309600 TCCTACCTTGGCTAGTACTCC 57.690 52.381 0.00 0.00 0.00 3.85
2578 2653 5.363005 TGAAATCCTACCTTGGCTAGTACTC 59.637 44.000 0.00 0.00 0.00 2.59
2686 2761 2.577593 CCGAGTTCCCGACCTTCC 59.422 66.667 0.00 0.00 0.00 3.46
2714 2789 9.405587 CCATTCGCTAGATTACAAAAAGAAAAA 57.594 29.630 0.00 0.00 0.00 1.94
2715 2790 8.026607 CCCATTCGCTAGATTACAAAAAGAAAA 58.973 33.333 0.00 0.00 0.00 2.29
2719 4592 6.677781 TCCCATTCGCTAGATTACAAAAAG 57.322 37.500 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.