Multiple sequence alignment - TraesCS3B01G538500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G538500 chr3B 100.000 2404 0 0 723 3126 778392045 778394448 0.000000e+00 4440.0
1 TraesCS3B01G538500 chr3B 92.275 1657 87 10 1494 3126 778442890 778444529 0.000000e+00 2313.0
2 TraesCS3B01G538500 chr3B 91.127 1499 78 20 1644 3126 778432629 778434088 0.000000e+00 1980.0
3 TraesCS3B01G538500 chr3B 91.866 836 63 3 1371 2202 778404248 778405082 0.000000e+00 1162.0
4 TraesCS3B01G538500 chr3B 94.762 630 31 1 723 1350 778403624 778404253 0.000000e+00 979.0
5 TraesCS3B01G538500 chr3B 91.905 630 46 3 723 1350 778442227 778442853 0.000000e+00 876.0
6 TraesCS3B01G538500 chr3B 100.000 446 0 0 1 446 778391323 778391768 0.000000e+00 824.0
7 TraesCS3B01G538500 chr3B 98.423 444 7 0 912 1355 778432029 778432472 0.000000e+00 782.0
8 TraesCS3B01G538500 chr3B 82.734 139 11 3 1939 2077 775972557 775972432 9.160000e-21 111.0
9 TraesCS3B01G538500 chr3B 97.368 38 1 0 1375 1412 778432466 778432503 7.240000e-07 65.8
10 TraesCS3B01G538500 chr3B 97.143 35 1 0 1378 1412 778442855 778442889 3.370000e-05 60.2
11 TraesCS3B01G538500 chr7B 94.969 318 16 0 129 446 351907913 351907596 1.670000e-137 499.0
12 TraesCS3B01G538500 chr5D 94.969 318 16 0 129 446 349375397 349375714 1.670000e-137 499.0
13 TraesCS3B01G538500 chr3D 94.984 319 15 1 129 446 553901364 553901682 1.670000e-137 499.0
14 TraesCS3B01G538500 chr3D 78.599 514 93 12 1735 2234 580587230 580586720 1.080000e-84 324.0
15 TraesCS3B01G538500 chr3D 78.750 320 63 3 1000 1315 582826283 582825965 3.160000e-50 209.0
16 TraesCS3B01G538500 chr3D 96.154 78 3 0 56 133 91809692 91809615 9.100000e-26 128.0
17 TraesCS3B01G538500 chr3D 86.458 96 11 2 1408 1502 177043187 177043281 1.530000e-18 104.0
18 TraesCS3B01G538500 chr3D 96.610 59 2 0 1 59 11347654 11347596 7.130000e-17 99.0
19 TraesCS3B01G538500 chr5B 94.654 318 17 0 129 446 275055142 275055459 7.790000e-136 494.0
20 TraesCS3B01G538500 chr5B 96.610 59 2 0 1 59 275055591 275055533 7.130000e-17 99.0
21 TraesCS3B01G538500 chr5A 94.654 318 17 0 129 446 677775847 677775530 7.790000e-136 494.0
22 TraesCS3B01G538500 chr5A 96.154 78 3 0 56 133 677775981 677775904 9.100000e-26 128.0
23 TraesCS3B01G538500 chr2D 94.654 318 17 0 129 446 179128520 179128203 7.790000e-136 494.0
24 TraesCS3B01G538500 chr2D 96.154 78 3 0 56 133 179128654 179128577 9.100000e-26 128.0
25 TraesCS3B01G538500 chr2D 94.048 84 5 0 50 133 603522482 603522565 9.100000e-26 128.0
26 TraesCS3B01G538500 chr2D 96.610 59 2 0 1 59 155510027 155509969 7.130000e-17 99.0
27 TraesCS3B01G538500 chr2D 96.610 59 2 0 1 59 179128071 179128129 7.130000e-17 99.0
28 TraesCS3B01G538500 chr4D 94.340 318 18 0 129 446 15921383 15921700 3.620000e-134 488.0
29 TraesCS3B01G538500 chr4D 96.610 59 2 0 1 59 15921837 15921779 7.130000e-17 99.0
30 TraesCS3B01G538500 chr4B 94.340 318 18 0 129 446 393459068 393459385 3.620000e-134 488.0
31 TraesCS3B01G538500 chr4B 96.610 59 2 0 1 59 249117400 249117458 7.130000e-17 99.0
32 TraesCS3B01G538500 chr1B 94.340 318 18 0 129 446 348398124 348397807 3.620000e-134 488.0
33 TraesCS3B01G538500 chr1B 87.059 85 11 0 1411 1495 56061720 56061804 2.570000e-16 97.1
34 TraesCS3B01G538500 chr6B 97.468 79 2 0 57 135 611458605 611458683 5.440000e-28 135.0
35 TraesCS3B01G538500 chr7D 94.048 84 5 0 50 133 511080279 511080362 9.100000e-26 128.0
36 TraesCS3B01G538500 chr7D 96.610 59 2 0 1 59 38864987 38865045 7.130000e-17 99.0
37 TraesCS3B01G538500 chr7A 96.154 78 3 0 56 133 193117809 193117732 9.100000e-26 128.0
38 TraesCS3B01G538500 chr7A 94.048 84 5 0 50 133 669734815 669734898 9.100000e-26 128.0
39 TraesCS3B01G538500 chr1D 96.154 78 3 0 56 133 388965927 388965850 9.100000e-26 128.0
40 TraesCS3B01G538500 chr1D 96.610 59 2 0 1 59 388965352 388965410 7.130000e-17 99.0
41 TraesCS3B01G538500 chr1D 85.393 89 11 2 1410 1498 37436532 37436446 1.190000e-14 91.6
42 TraesCS3B01G538500 chr6A 96.610 59 2 0 1 59 103303320 103303378 7.130000e-17 99.0
43 TraesCS3B01G538500 chr6D 85.882 85 12 0 1411 1495 78352689 78352773 1.190000e-14 91.6
44 TraesCS3B01G538500 chr6D 87.013 77 6 2 1421 1496 343295715 343295642 2.000000e-12 84.2
45 TraesCS3B01G538500 chr2B 88.732 71 8 0 1411 1481 331012718 331012788 1.540000e-13 87.9
46 TraesCS3B01G538500 chr3A 86.667 75 10 0 1428 1502 79399899 79399825 2.000000e-12 84.2
47 TraesCS3B01G538500 chr2A 85.000 80 12 0 1416 1495 591279997 591280076 7.190000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G538500 chr3B 778391323 778394448 3125 False 2632.000000 4440 100.000000 1 3126 2 chr3B.!!$F1 3125
1 TraesCS3B01G538500 chr3B 778442227 778444529 2302 False 1083.066667 2313 93.774333 723 3126 3 chr3B.!!$F4 2403
2 TraesCS3B01G538500 chr3B 778403624 778405082 1458 False 1070.500000 1162 93.314000 723 2202 2 chr3B.!!$F2 1479
3 TraesCS3B01G538500 chr3B 778432029 778434088 2059 False 942.600000 1980 95.639333 912 3126 3 chr3B.!!$F3 2214
4 TraesCS3B01G538500 chr3D 580586720 580587230 510 True 324.000000 324 78.599000 1735 2234 1 chr3D.!!$R3 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.027455 TGCAACGTCAACTTTGCTCG 59.973 50.0 20.51 2.92 46.97 5.03 F
197 198 0.031178 CGCAAGCCCAAGGATATTGC 59.969 55.0 10.78 10.78 42.12 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2026 0.761187 AGCACTCCTTGACAGCTTCA 59.239 50.0 0.0 0.0 29.98 3.02 R
2295 2328 0.733150 GATTTGCAACTAGGGCCGTC 59.267 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.944123 TATCCTAACCACGCCGCT 58.056 55.556 0.00 0.00 0.00 5.52
18 19 1.737816 TATCCTAACCACGCCGCTC 59.262 57.895 0.00 0.00 0.00 5.03
19 20 1.741327 TATCCTAACCACGCCGCTCC 61.741 60.000 0.00 0.00 0.00 4.70
20 21 4.077184 CCTAACCACGCCGCTCCA 62.077 66.667 0.00 0.00 0.00 3.86
21 22 2.047655 CTAACCACGCCGCTCCAA 60.048 61.111 0.00 0.00 0.00 3.53
22 23 2.357760 TAACCACGCCGCTCCAAC 60.358 61.111 0.00 0.00 0.00 3.77
23 24 3.887335 TAACCACGCCGCTCCAACC 62.887 63.158 0.00 0.00 0.00 3.77
41 42 4.754667 GGTCGGCGGTCCAGTTCC 62.755 72.222 7.21 0.00 0.00 3.62
45 46 4.754667 GGCGGTCCAGTTCCGGTC 62.755 72.222 0.00 0.00 46.90 4.79
46 47 3.692406 GCGGTCCAGTTCCGGTCT 61.692 66.667 0.00 0.00 46.90 3.85
47 48 3.057337 CGGTCCAGTTCCGGTCTT 58.943 61.111 0.00 0.00 43.68 3.01
48 49 1.374252 CGGTCCAGTTCCGGTCTTG 60.374 63.158 0.00 0.00 43.68 3.02
49 50 1.671379 GGTCCAGTTCCGGTCTTGC 60.671 63.158 0.00 0.00 0.00 4.01
50 51 1.070786 GTCCAGTTCCGGTCTTGCA 59.929 57.895 0.00 0.00 0.00 4.08
51 52 0.534203 GTCCAGTTCCGGTCTTGCAA 60.534 55.000 0.00 0.00 0.00 4.08
52 53 0.534203 TCCAGTTCCGGTCTTGCAAC 60.534 55.000 0.00 0.00 0.00 4.17
53 54 1.569493 CAGTTCCGGTCTTGCAACG 59.431 57.895 0.00 0.00 0.00 4.10
54 55 1.145377 AGTTCCGGTCTTGCAACGT 59.855 52.632 0.00 0.00 0.00 3.99
55 56 0.878961 AGTTCCGGTCTTGCAACGTC 60.879 55.000 0.00 0.00 0.00 4.34
56 57 1.144276 TTCCGGTCTTGCAACGTCA 59.856 52.632 0.00 0.00 0.00 4.35
57 58 0.462225 TTCCGGTCTTGCAACGTCAA 60.462 50.000 0.00 0.00 0.00 3.18
58 59 1.155424 TCCGGTCTTGCAACGTCAAC 61.155 55.000 0.00 0.00 0.00 3.18
59 60 1.157870 CCGGTCTTGCAACGTCAACT 61.158 55.000 0.00 0.00 0.00 3.16
60 61 0.655733 CGGTCTTGCAACGTCAACTT 59.344 50.000 0.00 0.00 0.00 2.66
61 62 1.063469 CGGTCTTGCAACGTCAACTTT 59.937 47.619 0.00 0.00 0.00 2.66
62 63 2.450160 GGTCTTGCAACGTCAACTTTG 58.550 47.619 0.00 0.00 0.00 2.77
64 65 1.742831 TCTTGCAACGTCAACTTTGCT 59.257 42.857 20.51 0.00 46.97 3.91
65 66 2.111756 CTTGCAACGTCAACTTTGCTC 58.888 47.619 20.51 0.00 46.97 4.26
66 67 0.027455 TGCAACGTCAACTTTGCTCG 59.973 50.000 20.51 2.92 46.97 5.03
67 68 0.657368 GCAACGTCAACTTTGCTCGG 60.657 55.000 14.86 0.00 44.54 4.63
68 69 0.041312 CAACGTCAACTTTGCTCGGG 60.041 55.000 0.00 0.00 32.70 5.14
69 70 1.782028 AACGTCAACTTTGCTCGGGC 61.782 55.000 0.00 0.00 39.26 6.13
70 71 2.954611 GTCAACTTTGCTCGGGCC 59.045 61.111 3.94 0.00 37.74 5.80
71 72 1.600916 GTCAACTTTGCTCGGGCCT 60.601 57.895 3.94 0.00 37.74 5.19
72 73 1.150536 TCAACTTTGCTCGGGCCTT 59.849 52.632 3.94 0.00 37.74 4.35
73 74 1.172180 TCAACTTTGCTCGGGCCTTG 61.172 55.000 3.94 0.89 37.74 3.61
74 75 2.564721 AACTTTGCTCGGGCCTTGC 61.565 57.895 3.94 6.30 37.74 4.01
75 76 4.107051 CTTTGCTCGGGCCTTGCG 62.107 66.667 3.94 0.00 37.74 4.85
86 87 3.134127 CCTTGCGGCTAAGGTGGC 61.134 66.667 17.62 0.00 41.85 5.01
87 88 3.134127 CTTGCGGCTAAGGTGGCC 61.134 66.667 0.00 0.00 45.57 5.36
94 95 3.095922 GCTAAGGTGGCCATGGTAC 57.904 57.895 9.72 12.79 0.00 3.34
95 96 0.814010 GCTAAGGTGGCCATGGTACG 60.814 60.000 9.72 0.00 0.00 3.67
96 97 0.828022 CTAAGGTGGCCATGGTACGA 59.172 55.000 9.72 0.00 0.00 3.43
97 98 1.208535 CTAAGGTGGCCATGGTACGAA 59.791 52.381 9.72 1.93 0.00 3.85
98 99 0.623723 AAGGTGGCCATGGTACGAAT 59.376 50.000 9.72 0.69 0.00 3.34
99 100 0.107214 AGGTGGCCATGGTACGAATG 60.107 55.000 9.72 1.17 0.00 2.67
100 101 1.101049 GGTGGCCATGGTACGAATGG 61.101 60.000 9.72 17.76 46.29 3.16
101 102 0.107410 GTGGCCATGGTACGAATGGA 60.107 55.000 23.60 6.87 46.44 3.41
102 103 0.621082 TGGCCATGGTACGAATGGAA 59.379 50.000 23.60 11.94 46.44 3.53
103 104 1.308998 GGCCATGGTACGAATGGAAG 58.691 55.000 23.60 4.64 46.44 3.46
104 105 1.308998 GCCATGGTACGAATGGAAGG 58.691 55.000 23.60 4.33 46.44 3.46
105 106 1.134220 GCCATGGTACGAATGGAAGGA 60.134 52.381 23.60 0.00 46.44 3.36
106 107 2.838736 CCATGGTACGAATGGAAGGAG 58.161 52.381 17.35 0.00 46.44 3.69
107 108 2.213499 CATGGTACGAATGGAAGGAGC 58.787 52.381 0.00 0.00 0.00 4.70
108 109 0.539986 TGGTACGAATGGAAGGAGCC 59.460 55.000 0.00 0.00 0.00 4.70
109 110 0.831307 GGTACGAATGGAAGGAGCCT 59.169 55.000 0.00 0.00 0.00 4.58
110 111 2.037144 GGTACGAATGGAAGGAGCCTA 58.963 52.381 0.00 0.00 0.00 3.93
111 112 2.223994 GGTACGAATGGAAGGAGCCTAC 60.224 54.545 0.00 0.00 0.00 3.18
112 113 0.831307 ACGAATGGAAGGAGCCTACC 59.169 55.000 0.00 0.00 0.00 3.18
113 114 0.830648 CGAATGGAAGGAGCCTACCA 59.169 55.000 0.00 0.00 36.83 3.25
114 115 1.209504 CGAATGGAAGGAGCCTACCAA 59.790 52.381 0.00 0.00 36.00 3.67
115 116 2.743183 CGAATGGAAGGAGCCTACCAAG 60.743 54.545 0.00 0.00 36.00 3.61
116 117 1.972588 ATGGAAGGAGCCTACCAAGT 58.027 50.000 0.00 0.00 36.00 3.16
117 118 1.742308 TGGAAGGAGCCTACCAAGTT 58.258 50.000 0.00 0.00 0.00 2.66
118 119 2.062636 TGGAAGGAGCCTACCAAGTTT 58.937 47.619 0.00 0.00 0.00 2.66
119 120 2.445525 TGGAAGGAGCCTACCAAGTTTT 59.554 45.455 0.00 0.00 0.00 2.43
120 121 2.820197 GGAAGGAGCCTACCAAGTTTTG 59.180 50.000 0.00 0.00 0.00 2.44
131 132 1.952193 CAAGTTTTGGGTTGGCTTGG 58.048 50.000 0.00 0.00 34.58 3.61
132 133 0.836606 AAGTTTTGGGTTGGCTTGGG 59.163 50.000 0.00 0.00 0.00 4.12
133 134 0.031616 AGTTTTGGGTTGGCTTGGGA 60.032 50.000 0.00 0.00 0.00 4.37
134 135 0.833949 GTTTTGGGTTGGCTTGGGAA 59.166 50.000 0.00 0.00 0.00 3.97
135 136 1.419762 GTTTTGGGTTGGCTTGGGAAT 59.580 47.619 0.00 0.00 0.00 3.01
136 137 1.055040 TTTGGGTTGGCTTGGGAATG 58.945 50.000 0.00 0.00 0.00 2.67
137 138 0.835543 TTGGGTTGGCTTGGGAATGG 60.836 55.000 0.00 0.00 0.00 3.16
138 139 1.229177 GGGTTGGCTTGGGAATGGT 60.229 57.895 0.00 0.00 0.00 3.55
139 140 1.543944 GGGTTGGCTTGGGAATGGTG 61.544 60.000 0.00 0.00 0.00 4.17
140 141 1.293179 GTTGGCTTGGGAATGGTGC 59.707 57.895 0.00 0.00 0.00 5.01
141 142 1.152376 TTGGCTTGGGAATGGTGCA 60.152 52.632 0.00 0.00 0.00 4.57
142 143 0.762082 TTGGCTTGGGAATGGTGCAA 60.762 50.000 0.00 0.00 0.00 4.08
143 144 0.762082 TGGCTTGGGAATGGTGCAAA 60.762 50.000 0.00 0.00 0.00 3.68
144 145 0.396060 GGCTTGGGAATGGTGCAAAA 59.604 50.000 0.00 0.00 0.00 2.44
145 146 1.202746 GGCTTGGGAATGGTGCAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
146 147 1.872952 GCTTGGGAATGGTGCAAAAAC 59.127 47.619 0.00 0.00 0.00 2.43
147 148 2.744494 GCTTGGGAATGGTGCAAAAACA 60.744 45.455 0.00 0.00 0.00 2.83
148 149 2.611225 TGGGAATGGTGCAAAAACAC 57.389 45.000 0.00 0.00 39.94 3.32
157 158 2.482864 GTGCAAAAACACCATTCTGGG 58.517 47.619 0.00 0.00 43.37 4.45
158 159 2.102252 GTGCAAAAACACCATTCTGGGA 59.898 45.455 0.00 0.00 43.37 4.37
159 160 2.102252 TGCAAAAACACCATTCTGGGAC 59.898 45.455 0.00 0.00 43.37 4.46
160 161 2.365293 GCAAAAACACCATTCTGGGACT 59.635 45.455 0.00 0.00 43.37 3.85
161 162 3.552890 GCAAAAACACCATTCTGGGACTC 60.553 47.826 0.00 0.00 43.37 3.36
162 163 2.586648 AAACACCATTCTGGGACTCC 57.413 50.000 0.00 0.00 43.37 3.85
163 164 0.698818 AACACCATTCTGGGACTCCC 59.301 55.000 7.25 7.25 43.37 4.30
172 173 3.246880 GGGACTCCCCGTGGTTGT 61.247 66.667 2.04 0.00 44.02 3.32
173 174 2.826003 GGGACTCCCCGTGGTTGTT 61.826 63.158 2.04 0.00 44.02 2.83
174 175 1.149854 GGACTCCCCGTGGTTGTTT 59.850 57.895 0.00 0.00 0.00 2.83
175 176 1.170290 GGACTCCCCGTGGTTGTTTG 61.170 60.000 0.00 0.00 0.00 2.93
176 177 1.152839 ACTCCCCGTGGTTGTTTGG 60.153 57.895 0.00 0.00 0.00 3.28
177 178 1.152839 CTCCCCGTGGTTGTTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
178 179 1.152922 TCCCCGTGGTTGTTTGGTC 60.153 57.895 0.00 0.00 0.00 4.02
179 180 2.548295 CCCCGTGGTTGTTTGGTCG 61.548 63.158 0.00 0.00 0.00 4.79
180 181 2.330041 CCGTGGTTGTTTGGTCGC 59.670 61.111 0.00 0.00 0.00 5.19
181 182 2.473760 CCGTGGTTGTTTGGTCGCA 61.474 57.895 0.00 0.00 0.00 5.10
182 183 1.429825 CGTGGTTGTTTGGTCGCAA 59.570 52.632 0.00 0.00 0.00 4.85
183 184 0.591236 CGTGGTTGTTTGGTCGCAAG 60.591 55.000 0.00 0.00 0.00 4.01
184 185 0.869880 GTGGTTGTTTGGTCGCAAGC 60.870 55.000 0.00 0.00 41.70 4.01
185 186 1.299850 GGTTGTTTGGTCGCAAGCC 60.300 57.895 0.00 0.00 37.19 4.35
186 187 1.299850 GTTGTTTGGTCGCAAGCCC 60.300 57.895 0.00 0.00 33.38 5.19
187 188 1.754621 TTGTTTGGTCGCAAGCCCA 60.755 52.632 0.00 0.00 33.38 5.36
188 189 1.323271 TTGTTTGGTCGCAAGCCCAA 61.323 50.000 0.00 0.00 38.92 4.12
189 190 1.007387 GTTTGGTCGCAAGCCCAAG 60.007 57.895 3.60 0.00 41.51 3.61
190 191 2.199652 TTTGGTCGCAAGCCCAAGG 61.200 57.895 3.60 0.00 41.51 3.61
191 192 2.632602 TTTGGTCGCAAGCCCAAGGA 62.633 55.000 3.60 0.00 41.51 3.36
192 193 2.044946 GGTCGCAAGCCCAAGGAT 60.045 61.111 0.00 0.00 37.18 3.24
193 194 1.223487 GGTCGCAAGCCCAAGGATA 59.777 57.895 0.00 0.00 37.18 2.59
194 195 0.179018 GGTCGCAAGCCCAAGGATAT 60.179 55.000 0.00 0.00 37.18 1.63
195 196 1.680338 GTCGCAAGCCCAAGGATATT 58.320 50.000 0.00 0.00 37.18 1.28
196 197 1.334869 GTCGCAAGCCCAAGGATATTG 59.665 52.381 0.00 0.00 37.18 1.90
197 198 0.031178 CGCAAGCCCAAGGATATTGC 59.969 55.000 10.78 10.78 42.12 3.56
198 199 0.390492 GCAAGCCCAAGGATATTGCC 59.610 55.000 10.06 0.00 40.20 4.52
199 200 1.043022 CAAGCCCAAGGATATTGCCC 58.957 55.000 0.00 0.00 0.00 5.36
200 201 0.105504 AAGCCCAAGGATATTGCCCC 60.106 55.000 0.00 0.00 0.00 5.80
201 202 1.903404 GCCCAAGGATATTGCCCCG 60.903 63.158 0.00 0.00 0.00 5.73
202 203 1.903404 CCCAAGGATATTGCCCCGC 60.903 63.158 0.00 0.00 0.00 6.13
203 204 1.151450 CCAAGGATATTGCCCCGCT 59.849 57.895 0.00 0.00 0.00 5.52
204 205 0.468029 CCAAGGATATTGCCCCGCTT 60.468 55.000 0.00 0.00 0.00 4.68
205 206 1.202879 CCAAGGATATTGCCCCGCTTA 60.203 52.381 0.00 0.00 0.00 3.09
206 207 2.555227 CCAAGGATATTGCCCCGCTTAT 60.555 50.000 0.00 0.00 0.00 1.73
207 208 3.157087 CAAGGATATTGCCCCGCTTATT 58.843 45.455 0.00 0.00 0.00 1.40
208 209 3.525800 AGGATATTGCCCCGCTTATTT 57.474 42.857 0.00 0.00 0.00 1.40
209 210 3.844640 AGGATATTGCCCCGCTTATTTT 58.155 40.909 0.00 0.00 0.00 1.82
210 211 4.223144 AGGATATTGCCCCGCTTATTTTT 58.777 39.130 0.00 0.00 0.00 1.94
211 212 4.280929 AGGATATTGCCCCGCTTATTTTTC 59.719 41.667 0.00 0.00 0.00 2.29
212 213 4.038642 GGATATTGCCCCGCTTATTTTTCA 59.961 41.667 0.00 0.00 0.00 2.69
213 214 3.971245 ATTGCCCCGCTTATTTTTCAA 57.029 38.095 0.00 0.00 0.00 2.69
214 215 3.311486 TTGCCCCGCTTATTTTTCAAG 57.689 42.857 0.00 0.00 0.00 3.02
215 216 1.067213 TGCCCCGCTTATTTTTCAAGC 60.067 47.619 0.00 0.00 43.99 4.01
216 217 1.739035 GCCCCGCTTATTTTTCAAGCC 60.739 52.381 1.76 0.00 44.47 4.35
217 218 1.824852 CCCCGCTTATTTTTCAAGCCT 59.175 47.619 1.76 0.00 44.47 4.58
218 219 2.159240 CCCCGCTTATTTTTCAAGCCTC 60.159 50.000 1.76 0.00 44.47 4.70
219 220 2.491693 CCCGCTTATTTTTCAAGCCTCA 59.508 45.455 1.76 0.00 44.47 3.86
220 221 3.056891 CCCGCTTATTTTTCAAGCCTCAA 60.057 43.478 1.76 0.00 44.47 3.02
221 222 4.555262 CCGCTTATTTTTCAAGCCTCAAA 58.445 39.130 1.76 0.00 44.47 2.69
222 223 4.987912 CCGCTTATTTTTCAAGCCTCAAAA 59.012 37.500 1.76 0.00 44.47 2.44
223 224 5.465056 CCGCTTATTTTTCAAGCCTCAAAAA 59.535 36.000 1.76 0.92 44.47 1.94
224 225 6.346838 CCGCTTATTTTTCAAGCCTCAAAAAG 60.347 38.462 1.76 0.00 44.47 2.27
237 238 4.831741 CTCAAAAAGGAAGAGATCGACG 57.168 45.455 0.00 0.00 0.00 5.12
238 239 2.993899 TCAAAAAGGAAGAGATCGACGC 59.006 45.455 0.00 0.00 0.00 5.19
239 240 2.996621 CAAAAAGGAAGAGATCGACGCT 59.003 45.455 0.00 0.00 0.00 5.07
240 241 3.320673 AAAAGGAAGAGATCGACGCTT 57.679 42.857 0.00 0.00 41.04 4.68
243 244 3.607777 GAAGAGATCGACGCTTCGT 57.392 52.632 12.66 0.00 46.01 3.85
252 253 3.626924 ACGCTTCGTCAGGCCCTT 61.627 61.111 0.00 0.00 33.69 3.95
253 254 2.815647 CGCTTCGTCAGGCCCTTC 60.816 66.667 0.00 0.00 0.00 3.46
254 255 2.815647 GCTTCGTCAGGCCCTTCG 60.816 66.667 0.00 1.25 0.00 3.79
255 256 2.970639 CTTCGTCAGGCCCTTCGA 59.029 61.111 0.00 4.13 0.00 3.71
256 257 1.153745 CTTCGTCAGGCCCTTCGAG 60.154 63.158 0.00 0.00 33.98 4.04
257 258 2.564553 CTTCGTCAGGCCCTTCGAGG 62.565 65.000 0.00 3.84 33.98 4.63
267 268 3.233355 CCTTCGAGGGAACACTTGG 57.767 57.895 8.08 0.00 0.00 3.61
268 269 0.685097 CCTTCGAGGGAACACTTGGA 59.315 55.000 8.08 0.00 0.00 3.53
269 270 1.279271 CCTTCGAGGGAACACTTGGAT 59.721 52.381 8.08 0.00 0.00 3.41
270 271 2.350522 CTTCGAGGGAACACTTGGATG 58.649 52.381 0.00 0.00 0.00 3.51
271 272 1.639722 TCGAGGGAACACTTGGATGA 58.360 50.000 0.00 0.00 0.00 2.92
272 273 1.275291 TCGAGGGAACACTTGGATGAC 59.725 52.381 0.00 0.00 0.00 3.06
273 274 1.676014 CGAGGGAACACTTGGATGACC 60.676 57.143 0.00 0.00 0.00 4.02
274 275 0.698818 AGGGAACACTTGGATGACCC 59.301 55.000 0.00 0.00 38.79 4.46
275 276 0.404040 GGGAACACTTGGATGACCCA 59.596 55.000 0.00 0.00 44.93 4.51
276 277 1.534729 GGAACACTTGGATGACCCAC 58.465 55.000 0.00 0.00 46.62 4.61
277 278 1.202879 GGAACACTTGGATGACCCACA 60.203 52.381 0.00 0.00 46.62 4.17
278 279 2.555227 GGAACACTTGGATGACCCACAT 60.555 50.000 0.00 0.00 46.62 3.21
287 288 2.812836 ATGACCCACATCAAGCATGA 57.187 45.000 0.00 0.00 40.57 3.07
288 289 1.825090 TGACCCACATCAAGCATGAC 58.175 50.000 0.00 0.00 38.69 3.06
289 290 1.352017 TGACCCACATCAAGCATGACT 59.648 47.619 0.00 0.00 38.69 3.41
290 291 2.012673 GACCCACATCAAGCATGACTC 58.987 52.381 0.00 0.00 38.69 3.36
291 292 1.632409 ACCCACATCAAGCATGACTCT 59.368 47.619 0.00 0.00 38.69 3.24
292 293 2.840038 ACCCACATCAAGCATGACTCTA 59.160 45.455 0.00 0.00 38.69 2.43
293 294 3.457380 ACCCACATCAAGCATGACTCTAT 59.543 43.478 0.00 0.00 38.69 1.98
294 295 4.080129 ACCCACATCAAGCATGACTCTATT 60.080 41.667 0.00 0.00 38.69 1.73
295 296 4.275196 CCCACATCAAGCATGACTCTATTG 59.725 45.833 0.00 0.00 38.69 1.90
296 297 4.880120 CCACATCAAGCATGACTCTATTGT 59.120 41.667 0.00 0.00 38.69 2.71
297 298 5.007430 CCACATCAAGCATGACTCTATTGTC 59.993 44.000 0.00 0.00 38.69 3.18
298 299 5.816258 CACATCAAGCATGACTCTATTGTCT 59.184 40.000 0.00 0.00 38.69 3.41
299 300 6.018913 CACATCAAGCATGACTCTATTGTCTC 60.019 42.308 0.00 0.00 38.69 3.36
300 301 5.929058 TCAAGCATGACTCTATTGTCTCT 57.071 39.130 0.00 0.00 37.79 3.10
301 302 5.658468 TCAAGCATGACTCTATTGTCTCTG 58.342 41.667 0.00 0.00 37.79 3.35
302 303 5.186603 TCAAGCATGACTCTATTGTCTCTGT 59.813 40.000 0.00 0.00 37.79 3.41
303 304 5.261209 AGCATGACTCTATTGTCTCTGTC 57.739 43.478 0.00 0.00 37.79 3.51
304 305 4.041049 GCATGACTCTATTGTCTCTGTCG 58.959 47.826 0.00 0.00 37.79 4.35
305 306 3.766676 TGACTCTATTGTCTCTGTCGC 57.233 47.619 0.00 0.00 37.79 5.19
306 307 3.081804 TGACTCTATTGTCTCTGTCGCA 58.918 45.455 0.00 0.00 37.79 5.10
307 308 3.119814 TGACTCTATTGTCTCTGTCGCAC 60.120 47.826 0.00 0.00 37.79 5.34
308 309 2.820197 ACTCTATTGTCTCTGTCGCACA 59.180 45.455 0.00 0.00 0.00 4.57
309 310 3.175152 CTCTATTGTCTCTGTCGCACAC 58.825 50.000 0.00 0.00 0.00 3.82
310 311 2.556622 TCTATTGTCTCTGTCGCACACA 59.443 45.455 0.00 0.00 0.00 3.72
311 312 2.462456 ATTGTCTCTGTCGCACACAT 57.538 45.000 0.00 0.00 33.23 3.21
312 313 1.783284 TTGTCTCTGTCGCACACATC 58.217 50.000 0.00 0.00 33.23 3.06
313 314 0.673437 TGTCTCTGTCGCACACATCA 59.327 50.000 0.00 0.00 33.23 3.07
314 315 1.336240 TGTCTCTGTCGCACACATCAG 60.336 52.381 0.00 0.00 33.23 2.90
315 316 1.068264 GTCTCTGTCGCACACATCAGA 60.068 52.381 0.00 0.00 33.23 3.27
316 317 1.626747 CTCTGTCGCACACATCAGAG 58.373 55.000 6.64 6.64 44.64 3.35
317 318 1.247567 TCTGTCGCACACATCAGAGA 58.752 50.000 0.00 0.00 33.23 3.10
318 319 1.613437 TCTGTCGCACACATCAGAGAA 59.387 47.619 0.00 0.00 33.23 2.87
319 320 1.723542 CTGTCGCACACATCAGAGAAC 59.276 52.381 0.00 0.00 33.23 3.01
320 321 0.710567 GTCGCACACATCAGAGAACG 59.289 55.000 0.00 0.00 0.00 3.95
321 322 0.313987 TCGCACACATCAGAGAACGT 59.686 50.000 0.00 0.00 0.00 3.99
322 323 1.139989 CGCACACATCAGAGAACGTT 58.860 50.000 0.00 0.00 0.00 3.99
323 324 1.526887 CGCACACATCAGAGAACGTTT 59.473 47.619 0.46 0.00 0.00 3.60
324 325 2.410262 CGCACACATCAGAGAACGTTTC 60.410 50.000 0.46 2.25 0.00 2.78
325 326 2.802816 GCACACATCAGAGAACGTTTCT 59.197 45.455 0.46 4.72 44.21 2.52
333 334 2.579013 GAGAACGTTTCTCGCTTTGG 57.421 50.000 0.46 0.00 45.85 3.28
334 335 1.194772 GAGAACGTTTCTCGCTTTGGG 59.805 52.381 0.46 0.00 45.85 4.12
335 336 0.385598 GAACGTTTCTCGCTTTGGGC 60.386 55.000 0.46 0.00 44.19 5.36
336 337 0.818040 AACGTTTCTCGCTTTGGGCT 60.818 50.000 0.00 0.00 44.19 5.19
337 338 1.228657 ACGTTTCTCGCTTTGGGCTC 61.229 55.000 0.00 0.00 44.19 4.70
338 339 0.951040 CGTTTCTCGCTTTGGGCTCT 60.951 55.000 0.00 0.00 39.13 4.09
339 340 1.239347 GTTTCTCGCTTTGGGCTCTT 58.761 50.000 0.00 0.00 39.13 2.85
340 341 1.068954 GTTTCTCGCTTTGGGCTCTTG 60.069 52.381 0.00 0.00 39.13 3.02
341 342 0.108585 TTCTCGCTTTGGGCTCTTGT 59.891 50.000 0.00 0.00 39.13 3.16
342 343 0.603707 TCTCGCTTTGGGCTCTTGTG 60.604 55.000 0.00 0.00 39.13 3.33
343 344 2.192608 CTCGCTTTGGGCTCTTGTGC 62.193 60.000 0.00 0.00 39.13 4.57
344 345 2.554636 CGCTTTGGGCTCTTGTGCA 61.555 57.895 0.00 0.00 39.13 4.57
345 346 1.870055 CGCTTTGGGCTCTTGTGCAT 61.870 55.000 0.00 0.00 39.13 3.96
346 347 0.389426 GCTTTGGGCTCTTGTGCATG 60.389 55.000 0.00 0.00 38.06 4.06
347 348 1.250328 CTTTGGGCTCTTGTGCATGA 58.750 50.000 0.00 0.00 34.04 3.07
348 349 0.961019 TTTGGGCTCTTGTGCATGAC 59.039 50.000 0.00 0.00 34.04 3.06
349 350 0.111061 TTGGGCTCTTGTGCATGACT 59.889 50.000 0.00 0.00 34.04 3.41
350 351 0.111061 TGGGCTCTTGTGCATGACTT 59.889 50.000 0.00 0.00 34.04 3.01
351 352 0.807496 GGGCTCTTGTGCATGACTTC 59.193 55.000 0.00 0.00 34.04 3.01
352 353 0.807496 GGCTCTTGTGCATGACTTCC 59.193 55.000 0.00 0.00 34.04 3.46
353 354 1.527034 GCTCTTGTGCATGACTTCCA 58.473 50.000 0.00 0.00 0.00 3.53
354 355 2.089980 GCTCTTGTGCATGACTTCCAT 58.910 47.619 0.00 0.00 35.44 3.41
355 356 2.097142 GCTCTTGTGCATGACTTCCATC 59.903 50.000 0.00 0.00 31.94 3.51
356 357 3.607741 CTCTTGTGCATGACTTCCATCT 58.392 45.455 0.00 0.00 31.94 2.90
357 358 4.008330 CTCTTGTGCATGACTTCCATCTT 58.992 43.478 0.00 0.00 31.94 2.40
358 359 3.754850 TCTTGTGCATGACTTCCATCTTG 59.245 43.478 0.00 0.00 31.94 3.02
359 360 3.421919 TGTGCATGACTTCCATCTTGA 57.578 42.857 0.00 0.00 31.94 3.02
360 361 3.076621 TGTGCATGACTTCCATCTTGAC 58.923 45.455 0.00 0.00 31.94 3.18
361 362 2.094894 GTGCATGACTTCCATCTTGACG 59.905 50.000 0.00 0.00 31.94 4.35
362 363 2.028203 TGCATGACTTCCATCTTGACGA 60.028 45.455 0.00 0.00 31.94 4.20
363 364 3.201290 GCATGACTTCCATCTTGACGAT 58.799 45.455 0.00 0.00 31.94 3.73
364 365 3.247173 GCATGACTTCCATCTTGACGATC 59.753 47.826 0.00 0.00 31.94 3.69
365 366 4.436332 CATGACTTCCATCTTGACGATCA 58.564 43.478 0.00 0.00 31.94 2.92
366 367 3.849911 TGACTTCCATCTTGACGATCAC 58.150 45.455 0.00 0.00 0.00 3.06
367 368 2.854777 GACTTCCATCTTGACGATCACG 59.145 50.000 0.00 0.00 45.75 4.35
389 390 5.427036 GTTTAGGACGACATTGTTTGGAA 57.573 39.130 0.00 0.00 0.00 3.53
390 391 5.449304 GTTTAGGACGACATTGTTTGGAAG 58.551 41.667 0.00 0.00 0.00 3.46
391 392 1.880027 AGGACGACATTGTTTGGAAGC 59.120 47.619 0.00 0.00 0.00 3.86
392 393 1.606668 GGACGACATTGTTTGGAAGCA 59.393 47.619 0.00 0.00 0.00 3.91
393 394 2.228822 GGACGACATTGTTTGGAAGCAT 59.771 45.455 0.00 0.00 0.00 3.79
394 395 3.236816 GACGACATTGTTTGGAAGCATG 58.763 45.455 0.00 0.00 0.00 4.06
395 396 1.987770 CGACATTGTTTGGAAGCATGC 59.012 47.619 10.51 10.51 0.00 4.06
396 397 2.352030 CGACATTGTTTGGAAGCATGCT 60.352 45.455 16.30 16.30 0.00 3.79
397 398 2.991190 GACATTGTTTGGAAGCATGCTG 59.009 45.455 23.48 7.88 0.00 4.41
398 399 2.629137 ACATTGTTTGGAAGCATGCTGA 59.371 40.909 23.48 5.52 0.00 4.26
399 400 3.259876 ACATTGTTTGGAAGCATGCTGAT 59.740 39.130 23.48 6.22 0.00 2.90
400 401 3.306917 TTGTTTGGAAGCATGCTGATG 57.693 42.857 23.48 0.00 0.00 3.07
401 402 2.516906 TGTTTGGAAGCATGCTGATGA 58.483 42.857 23.48 5.44 0.00 2.92
402 403 3.093814 TGTTTGGAAGCATGCTGATGAT 58.906 40.909 23.48 4.36 0.00 2.45
403 404 3.119280 TGTTTGGAAGCATGCTGATGATG 60.119 43.478 23.48 0.00 0.00 3.07
404 405 2.721425 TGGAAGCATGCTGATGATGA 57.279 45.000 23.48 0.00 0.00 2.92
405 406 2.572290 TGGAAGCATGCTGATGATGAG 58.428 47.619 23.48 0.00 0.00 2.90
406 407 1.267261 GGAAGCATGCTGATGATGAGC 59.733 52.381 23.48 0.00 36.95 4.26
414 415 3.387397 TGCTGATGATGAGCAGTATTCG 58.613 45.455 1.51 0.00 41.56 3.34
415 416 2.735663 GCTGATGATGAGCAGTATTCGG 59.264 50.000 0.00 0.00 37.94 4.30
416 417 2.735663 CTGATGATGAGCAGTATTCGGC 59.264 50.000 0.00 0.00 30.49 5.54
417 418 1.723542 GATGATGAGCAGTATTCGGCG 59.276 52.381 0.00 0.00 39.59 6.46
418 419 0.249447 TGATGAGCAGTATTCGGCGG 60.249 55.000 7.21 0.00 39.59 6.13
419 420 1.560860 GATGAGCAGTATTCGGCGGC 61.561 60.000 7.21 0.00 39.59 6.53
420 421 2.967615 GAGCAGTATTCGGCGGCC 60.968 66.667 9.54 9.54 39.59 6.13
421 422 3.733344 GAGCAGTATTCGGCGGCCA 62.733 63.158 20.71 0.00 39.59 5.36
422 423 3.573491 GCAGTATTCGGCGGCCAC 61.573 66.667 20.71 9.54 0.00 5.01
423 424 2.125310 CAGTATTCGGCGGCCACA 60.125 61.111 20.71 4.50 0.00 4.17
424 425 2.173669 CAGTATTCGGCGGCCACAG 61.174 63.158 20.71 2.57 0.00 3.66
425 426 3.573491 GTATTCGGCGGCCACAGC 61.573 66.667 20.71 0.00 38.76 4.40
426 427 4.089239 TATTCGGCGGCCACAGCA 62.089 61.111 20.71 0.00 42.56 4.41
427 428 3.399105 TATTCGGCGGCCACAGCAT 62.399 57.895 20.71 5.32 42.56 3.79
428 429 2.034048 TATTCGGCGGCCACAGCATA 62.034 55.000 20.71 4.34 42.56 3.14
429 430 2.680974 ATTCGGCGGCCACAGCATAT 62.681 55.000 20.71 0.00 42.56 1.78
430 431 2.030412 CGGCGGCCACAGCATATA 59.970 61.111 20.71 0.00 42.56 0.86
431 432 1.596752 CGGCGGCCACAGCATATAA 60.597 57.895 20.71 0.00 42.56 0.98
432 433 1.163420 CGGCGGCCACAGCATATAAA 61.163 55.000 20.71 0.00 42.56 1.40
433 434 0.593128 GGCGGCCACAGCATATAAAG 59.407 55.000 15.62 0.00 42.56 1.85
434 435 0.040067 GCGGCCACAGCATATAAAGC 60.040 55.000 2.24 0.00 42.56 3.51
435 436 0.235665 CGGCCACAGCATATAAAGCG 59.764 55.000 2.24 0.00 42.56 4.68
436 437 0.040067 GGCCACAGCATATAAAGCGC 60.040 55.000 0.00 0.00 42.56 5.92
437 438 0.662619 GCCACAGCATATAAAGCGCA 59.337 50.000 11.47 0.00 39.53 6.09
438 439 1.065401 GCCACAGCATATAAAGCGCAA 59.935 47.619 11.47 0.00 39.53 4.85
439 440 2.287788 GCCACAGCATATAAAGCGCAAT 60.288 45.455 11.47 2.21 39.53 3.56
440 441 3.796504 GCCACAGCATATAAAGCGCAATT 60.797 43.478 11.47 6.97 39.53 2.32
441 442 3.976942 CCACAGCATATAAAGCGCAATTC 59.023 43.478 11.47 0.00 37.01 2.17
442 443 3.976942 CACAGCATATAAAGCGCAATTCC 59.023 43.478 11.47 0.00 37.01 3.01
443 444 3.885297 ACAGCATATAAAGCGCAATTCCT 59.115 39.130 11.47 0.00 37.01 3.36
444 445 4.339247 ACAGCATATAAAGCGCAATTCCTT 59.661 37.500 11.47 0.00 37.01 3.36
445 446 4.678287 CAGCATATAAAGCGCAATTCCTTG 59.322 41.667 11.47 0.00 37.01 3.61
780 781 5.273674 TCAATCTTAGTGAGCATCCTCTG 57.726 43.478 0.00 0.00 38.93 3.35
827 828 3.058160 CCCTCGCCACCAAGCTTG 61.058 66.667 19.93 19.93 0.00 4.01
838 839 2.689983 CACCAAGCTTGTCCTTTTGACT 59.310 45.455 24.35 0.00 44.75 3.41
839 840 2.689983 ACCAAGCTTGTCCTTTTGACTG 59.310 45.455 24.35 7.46 44.75 3.51
846 847 4.789802 GCTTGTCCTTTTGACTGTAGCAAC 60.790 45.833 0.00 0.00 44.75 4.17
855 856 7.335422 CCTTTTGACTGTAGCAACTGATAAGAT 59.665 37.037 0.00 0.00 0.00 2.40
856 857 9.371136 CTTTTGACTGTAGCAACTGATAAGATA 57.629 33.333 0.00 0.00 0.00 1.98
894 897 1.490910 AGAATTAAGAGAAGGGCCCGG 59.509 52.381 18.44 0.00 0.00 5.73
1351 1356 9.928236 GAGATAGTTCTTACAATTCAAATCAGC 57.072 33.333 0.00 0.00 30.30 4.26
1352 1357 9.678260 AGATAGTTCTTACAATTCAAATCAGCT 57.322 29.630 0.00 0.00 0.00 4.24
1353 1358 9.928236 GATAGTTCTTACAATTCAAATCAGCTC 57.072 33.333 0.00 0.00 0.00 4.09
1354 1359 7.992754 AGTTCTTACAATTCAAATCAGCTCT 57.007 32.000 0.00 0.00 0.00 4.09
1356 1361 8.940952 AGTTCTTACAATTCAAATCAGCTCTAC 58.059 33.333 0.00 0.00 0.00 2.59
1357 1362 7.849804 TCTTACAATTCAAATCAGCTCTACC 57.150 36.000 0.00 0.00 0.00 3.18
1358 1363 7.394016 TCTTACAATTCAAATCAGCTCTACCA 58.606 34.615 0.00 0.00 0.00 3.25
1359 1364 5.886960 ACAATTCAAATCAGCTCTACCAC 57.113 39.130 0.00 0.00 0.00 4.16
1360 1365 4.702131 ACAATTCAAATCAGCTCTACCACC 59.298 41.667 0.00 0.00 0.00 4.61
1361 1366 4.574674 ATTCAAATCAGCTCTACCACCA 57.425 40.909 0.00 0.00 0.00 4.17
1362 1367 4.574674 TTCAAATCAGCTCTACCACCAT 57.425 40.909 0.00 0.00 0.00 3.55
1363 1368 4.574674 TCAAATCAGCTCTACCACCATT 57.425 40.909 0.00 0.00 0.00 3.16
1364 1369 4.264253 TCAAATCAGCTCTACCACCATTG 58.736 43.478 0.00 0.00 0.00 2.82
1365 1370 4.019411 TCAAATCAGCTCTACCACCATTGA 60.019 41.667 0.00 0.00 0.00 2.57
1366 1371 4.574674 AATCAGCTCTACCACCATTGAA 57.425 40.909 0.00 0.00 0.00 2.69
1367 1372 3.616956 TCAGCTCTACCACCATTGAAG 57.383 47.619 0.00 0.00 0.00 3.02
1368 1373 3.173151 TCAGCTCTACCACCATTGAAGA 58.827 45.455 0.00 0.00 0.00 2.87
1369 1374 3.582647 TCAGCTCTACCACCATTGAAGAA 59.417 43.478 0.00 0.00 0.00 2.52
1370 1375 4.041567 TCAGCTCTACCACCATTGAAGAAA 59.958 41.667 0.00 0.00 0.00 2.52
1371 1376 4.761739 CAGCTCTACCACCATTGAAGAAAA 59.238 41.667 0.00 0.00 0.00 2.29
1372 1377 5.241506 CAGCTCTACCACCATTGAAGAAAAA 59.758 40.000 0.00 0.00 0.00 1.94
1423 1428 4.512198 CGCTCATATATACTCCCTCCGTAG 59.488 50.000 0.00 0.00 0.00 3.51
1437 1442 5.364446 TCCCTCCGTAGCAAAATATAAGACA 59.636 40.000 0.00 0.00 0.00 3.41
1443 1448 9.781834 TCCGTAGCAAAATATAAGACATTTTTG 57.218 29.630 0.00 0.00 40.37 2.44
1517 1522 9.679661 AGTAAATCATACATATTGTGTTGGACA 57.320 29.630 0.00 0.00 42.29 4.02
1526 1531 7.894708 ACATATTGTGTTGGACATTGAATTGA 58.105 30.769 0.00 0.00 38.01 2.57
1535 1540 4.395854 TGGACATTGAATTGATCTCAACCG 59.604 41.667 0.00 0.00 38.86 4.44
1722 1740 9.758651 AACCCAATTGAAATACTTTCTAACAAC 57.241 29.630 7.12 0.00 40.32 3.32
1748 1766 5.237815 TCTTCATTTAGTGCTTGATGTCGT 58.762 37.500 0.00 0.00 0.00 4.34
1818 1839 1.499049 GACGCAAAAGAGAACCTCGT 58.501 50.000 0.00 0.00 35.36 4.18
1820 1841 0.512952 CGCAAAAGAGAACCTCGTGG 59.487 55.000 0.99 0.99 35.36 4.94
1908 1929 1.261238 GGTGCCAGCCTACTGTCTCT 61.261 60.000 0.00 0.00 42.81 3.10
1936 1957 1.737735 CGTGATGCAAGAGGTCGCA 60.738 57.895 0.00 0.00 43.45 5.10
2005 2026 1.460504 TCGAGGACTACAACGCTGAT 58.539 50.000 0.00 0.00 0.00 2.90
2143 2173 9.892130 AAGAAATAGTCTAATCTGGTAGGTTTG 57.108 33.333 0.64 0.00 34.56 2.93
2158 2188 0.319813 GTTTGGTCATGCTTGTGGCC 60.320 55.000 0.00 0.00 44.23 5.36
2180 2210 6.767902 GGCCTGAATCAACATGAAGATAAGTA 59.232 38.462 0.00 0.00 0.00 2.24
2295 2328 1.178276 AGTCCAACCTCGACTAGCAG 58.822 55.000 0.00 0.00 38.82 4.24
2300 2333 1.935327 AACCTCGACTAGCAGACGGC 61.935 60.000 7.76 0.00 45.30 5.68
2364 2413 2.744202 CGCAGCTATGTTTTTGTCCTCT 59.256 45.455 0.00 0.00 0.00 3.69
2390 2439 2.312390 GCAACTTTAACCCCCAACTCA 58.688 47.619 0.00 0.00 0.00 3.41
2448 2497 0.250727 TAGCTCAACAAGGGGTGTGC 60.251 55.000 0.00 0.00 40.60 4.57
2450 2499 2.203280 TCAACAAGGGGTGTGCGG 60.203 61.111 0.00 0.00 40.60 5.69
2549 2598 3.006967 TCACTAAACAGAAGGTGGAGAGC 59.993 47.826 0.00 0.00 0.00 4.09
2550 2599 2.972713 ACTAAACAGAAGGTGGAGAGCA 59.027 45.455 0.00 0.00 0.00 4.26
2554 2605 2.264455 ACAGAAGGTGGAGAGCATTCT 58.736 47.619 0.00 0.00 36.01 2.40
2658 2709 6.843069 ACTTTTTAGCGTTTCCGTAACTTA 57.157 33.333 0.00 0.00 34.46 2.24
2668 2720 6.536688 CGTTTCCGTAACTTATTTTGGGTAG 58.463 40.000 0.00 0.00 34.46 3.18
2839 2891 1.378762 GGTCTTGGTGGGCTAGCAA 59.621 57.895 18.24 14.78 43.97 3.91
2864 2916 6.884836 AGGGTTATGTCTTACACAATTCCTTC 59.115 38.462 0.00 0.00 38.97 3.46
2927 2979 7.583762 GTCTTGTGCTGTTTTCATTTTTATTGC 59.416 33.333 0.00 0.00 0.00 3.56
2972 3024 6.003950 TGCAAAAACAGCTATCTAAACTCCT 58.996 36.000 0.00 0.00 0.00 3.69
2996 3048 6.988622 TTTCTTTTTCTTCGTGGTTAGTGA 57.011 33.333 0.00 0.00 0.00 3.41
3001 3053 1.961394 TCTTCGTGGTTAGTGAGTGCT 59.039 47.619 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.737816 GAGCGGCGTGGTTAGGATA 59.262 57.895 9.37 0.00 0.00 2.59
1 2 2.499685 GAGCGGCGTGGTTAGGAT 59.500 61.111 9.37 0.00 0.00 3.24
2 3 3.766691 GGAGCGGCGTGGTTAGGA 61.767 66.667 9.37 0.00 0.00 2.94
3 4 3.599285 TTGGAGCGGCGTGGTTAGG 62.599 63.158 9.37 0.00 0.00 2.69
4 5 2.047655 TTGGAGCGGCGTGGTTAG 60.048 61.111 9.37 0.00 0.00 2.34
5 6 2.357760 GTTGGAGCGGCGTGGTTA 60.358 61.111 9.37 0.00 0.00 2.85
24 25 4.754667 GGAACTGGACCGCCGACC 62.755 72.222 0.00 0.00 36.79 4.79
31 32 1.671379 GCAAGACCGGAACTGGACC 60.671 63.158 9.46 0.00 0.00 4.46
32 33 0.534203 TTGCAAGACCGGAACTGGAC 60.534 55.000 9.46 0.26 0.00 4.02
33 34 0.534203 GTTGCAAGACCGGAACTGGA 60.534 55.000 9.46 0.00 34.67 3.86
34 35 1.841663 CGTTGCAAGACCGGAACTGG 61.842 60.000 9.46 5.90 35.29 4.00
35 36 1.157870 ACGTTGCAAGACCGGAACTG 61.158 55.000 9.46 2.29 35.29 3.16
36 37 0.878961 GACGTTGCAAGACCGGAACT 60.879 55.000 9.46 3.91 35.29 3.01
37 38 1.155424 TGACGTTGCAAGACCGGAAC 61.155 55.000 9.46 0.00 34.21 3.62
38 39 0.462225 TTGACGTTGCAAGACCGGAA 60.462 50.000 9.46 2.67 0.00 4.30
39 40 1.144276 TTGACGTTGCAAGACCGGA 59.856 52.632 9.46 0.00 0.00 5.14
40 41 1.157870 AGTTGACGTTGCAAGACCGG 61.158 55.000 11.92 0.00 0.00 5.28
41 42 0.655733 AAGTTGACGTTGCAAGACCG 59.344 50.000 0.00 2.29 0.00 4.79
42 43 2.450160 CAAAGTTGACGTTGCAAGACC 58.550 47.619 0.00 0.00 0.00 3.85
49 50 0.041312 CCCGAGCAAAGTTGACGTTG 60.041 55.000 5.59 5.59 38.16 4.10
50 51 1.782028 GCCCGAGCAAAGTTGACGTT 61.782 55.000 0.00 0.00 39.53 3.99
51 52 2.251642 GCCCGAGCAAAGTTGACGT 61.252 57.895 0.00 0.00 39.53 4.34
52 53 2.556287 GCCCGAGCAAAGTTGACG 59.444 61.111 0.00 0.28 39.53 4.35
53 54 1.172812 AAGGCCCGAGCAAAGTTGAC 61.173 55.000 0.00 0.00 42.56 3.18
54 55 1.150536 AAGGCCCGAGCAAAGTTGA 59.849 52.632 0.00 0.00 42.56 3.18
55 56 1.286880 CAAGGCCCGAGCAAAGTTG 59.713 57.895 0.00 0.00 42.56 3.16
56 57 2.564721 GCAAGGCCCGAGCAAAGTT 61.565 57.895 0.00 0.00 42.56 2.66
57 58 2.985847 GCAAGGCCCGAGCAAAGT 60.986 61.111 0.00 0.00 42.56 2.66
58 59 4.107051 CGCAAGGCCCGAGCAAAG 62.107 66.667 0.00 0.00 42.56 2.77
70 71 3.134127 GGCCACCTTAGCCGCAAG 61.134 66.667 0.00 0.00 41.41 4.01
76 77 0.814010 CGTACCATGGCCACCTTAGC 60.814 60.000 8.16 0.00 0.00 3.09
77 78 0.828022 TCGTACCATGGCCACCTTAG 59.172 55.000 8.16 0.00 0.00 2.18
78 79 1.277579 TTCGTACCATGGCCACCTTA 58.722 50.000 8.16 0.00 0.00 2.69
79 80 0.623723 ATTCGTACCATGGCCACCTT 59.376 50.000 8.16 0.00 0.00 3.50
80 81 0.107214 CATTCGTACCATGGCCACCT 60.107 55.000 8.16 0.00 0.00 4.00
81 82 1.101049 CCATTCGTACCATGGCCACC 61.101 60.000 8.16 0.00 34.98 4.61
82 83 0.107410 TCCATTCGTACCATGGCCAC 60.107 55.000 8.16 9.43 41.10 5.01
83 84 0.621082 TTCCATTCGTACCATGGCCA 59.379 50.000 13.04 8.56 41.10 5.36
84 85 1.308998 CTTCCATTCGTACCATGGCC 58.691 55.000 13.04 0.00 41.10 5.36
85 86 1.134220 TCCTTCCATTCGTACCATGGC 60.134 52.381 13.04 0.00 41.10 4.40
86 87 2.838736 CTCCTTCCATTCGTACCATGG 58.161 52.381 11.19 11.19 42.51 3.66
87 88 2.213499 GCTCCTTCCATTCGTACCATG 58.787 52.381 0.00 0.00 0.00 3.66
88 89 1.141053 GGCTCCTTCCATTCGTACCAT 59.859 52.381 0.00 0.00 0.00 3.55
89 90 0.539986 GGCTCCTTCCATTCGTACCA 59.460 55.000 0.00 0.00 0.00 3.25
90 91 0.831307 AGGCTCCTTCCATTCGTACC 59.169 55.000 0.00 0.00 0.00 3.34
91 92 2.223994 GGTAGGCTCCTTCCATTCGTAC 60.224 54.545 6.70 0.00 34.23 3.67
92 93 2.037144 GGTAGGCTCCTTCCATTCGTA 58.963 52.381 6.70 0.00 34.23 3.43
93 94 0.831307 GGTAGGCTCCTTCCATTCGT 59.169 55.000 6.70 0.00 34.23 3.85
94 95 0.830648 TGGTAGGCTCCTTCCATTCG 59.169 55.000 9.84 0.00 38.34 3.34
95 96 2.239907 ACTTGGTAGGCTCCTTCCATTC 59.760 50.000 13.94 0.00 41.87 2.67
96 97 2.279173 ACTTGGTAGGCTCCTTCCATT 58.721 47.619 13.94 3.44 41.87 3.16
97 98 1.972588 ACTTGGTAGGCTCCTTCCAT 58.027 50.000 13.94 0.00 41.87 3.41
98 99 1.742308 AACTTGGTAGGCTCCTTCCA 58.258 50.000 9.84 9.84 40.86 3.53
99 100 2.820197 CAAAACTTGGTAGGCTCCTTCC 59.180 50.000 4.79 4.79 34.59 3.46
100 101 2.820197 CCAAAACTTGGTAGGCTCCTTC 59.180 50.000 0.00 0.00 45.93 3.46
101 102 2.876581 CCAAAACTTGGTAGGCTCCTT 58.123 47.619 0.00 0.00 45.93 3.36
102 103 2.586648 CCAAAACTTGGTAGGCTCCT 57.413 50.000 0.00 0.00 45.93 3.69
112 113 1.474855 CCCAAGCCAACCCAAAACTTG 60.475 52.381 0.00 0.00 37.94 3.16
113 114 0.836606 CCCAAGCCAACCCAAAACTT 59.163 50.000 0.00 0.00 0.00 2.66
114 115 0.031616 TCCCAAGCCAACCCAAAACT 60.032 50.000 0.00 0.00 0.00 2.66
115 116 0.833949 TTCCCAAGCCAACCCAAAAC 59.166 50.000 0.00 0.00 0.00 2.43
116 117 1.419387 CATTCCCAAGCCAACCCAAAA 59.581 47.619 0.00 0.00 0.00 2.44
117 118 1.055040 CATTCCCAAGCCAACCCAAA 58.945 50.000 0.00 0.00 0.00 3.28
118 119 0.835543 CCATTCCCAAGCCAACCCAA 60.836 55.000 0.00 0.00 0.00 4.12
119 120 1.229145 CCATTCCCAAGCCAACCCA 60.229 57.895 0.00 0.00 0.00 4.51
120 121 1.229177 ACCATTCCCAAGCCAACCC 60.229 57.895 0.00 0.00 0.00 4.11
121 122 1.974543 CACCATTCCCAAGCCAACC 59.025 57.895 0.00 0.00 0.00 3.77
122 123 1.293179 GCACCATTCCCAAGCCAAC 59.707 57.895 0.00 0.00 0.00 3.77
123 124 0.762082 TTGCACCATTCCCAAGCCAA 60.762 50.000 0.00 0.00 0.00 4.52
124 125 0.762082 TTTGCACCATTCCCAAGCCA 60.762 50.000 0.00 0.00 0.00 4.75
125 126 0.396060 TTTTGCACCATTCCCAAGCC 59.604 50.000 0.00 0.00 0.00 4.35
126 127 1.872952 GTTTTTGCACCATTCCCAAGC 59.127 47.619 0.00 0.00 0.00 4.01
127 128 2.871633 GTGTTTTTGCACCATTCCCAAG 59.128 45.455 0.00 0.00 33.53 3.61
128 129 2.911484 GTGTTTTTGCACCATTCCCAA 58.089 42.857 0.00 0.00 33.53 4.12
129 130 2.611225 GTGTTTTTGCACCATTCCCA 57.389 45.000 0.00 0.00 33.53 4.37
156 157 1.149854 AAACAACCACGGGGAGTCC 59.850 57.895 12.96 0.00 38.05 3.85
157 158 1.170290 CCAAACAACCACGGGGAGTC 61.170 60.000 12.96 0.00 38.05 3.36
158 159 1.152839 CCAAACAACCACGGGGAGT 60.153 57.895 12.96 5.52 38.05 3.85
159 160 1.152839 ACCAAACAACCACGGGGAG 60.153 57.895 12.96 4.69 38.05 4.30
160 161 1.152922 GACCAAACAACCACGGGGA 60.153 57.895 12.96 0.00 38.05 4.81
161 162 2.548295 CGACCAAACAACCACGGGG 61.548 63.158 0.00 0.00 41.29 5.73
162 163 3.027292 CGACCAAACAACCACGGG 58.973 61.111 0.00 0.00 0.00 5.28
163 164 1.994507 TTGCGACCAAACAACCACGG 61.995 55.000 0.00 0.00 0.00 4.94
164 165 0.591236 CTTGCGACCAAACAACCACG 60.591 55.000 0.00 0.00 0.00 4.94
165 166 0.869880 GCTTGCGACCAAACAACCAC 60.870 55.000 0.00 0.00 0.00 4.16
166 167 1.435515 GCTTGCGACCAAACAACCA 59.564 52.632 0.00 0.00 0.00 3.67
167 168 1.299850 GGCTTGCGACCAAACAACC 60.300 57.895 0.00 0.00 0.00 3.77
168 169 1.299850 GGGCTTGCGACCAAACAAC 60.300 57.895 0.00 0.00 38.64 3.32
169 170 3.124686 GGGCTTGCGACCAAACAA 58.875 55.556 0.00 0.00 38.64 2.83
175 176 0.179018 ATATCCTTGGGCTTGCGACC 60.179 55.000 0.00 0.00 39.55 4.79
176 177 1.334869 CAATATCCTTGGGCTTGCGAC 59.665 52.381 0.00 0.00 0.00 5.19
177 178 1.679139 CAATATCCTTGGGCTTGCGA 58.321 50.000 0.00 0.00 0.00 5.10
178 179 0.031178 GCAATATCCTTGGGCTTGCG 59.969 55.000 0.00 0.00 33.67 4.85
179 180 0.390492 GGCAATATCCTTGGGCTTGC 59.610 55.000 10.85 10.85 41.04 4.01
180 181 1.043022 GGGCAATATCCTTGGGCTTG 58.957 55.000 0.00 0.00 0.00 4.01
181 182 0.105504 GGGGCAATATCCTTGGGCTT 60.106 55.000 0.00 0.00 0.00 4.35
182 183 1.543690 GGGGCAATATCCTTGGGCT 59.456 57.895 0.00 0.00 0.00 5.19
183 184 1.903404 CGGGGCAATATCCTTGGGC 60.903 63.158 0.00 0.00 0.00 5.36
184 185 1.903404 GCGGGGCAATATCCTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
185 186 0.468029 AAGCGGGGCAATATCCTTGG 60.468 55.000 0.00 0.00 0.00 3.61
186 187 2.270352 TAAGCGGGGCAATATCCTTG 57.730 50.000 0.00 0.00 0.00 3.61
187 188 3.525800 AATAAGCGGGGCAATATCCTT 57.474 42.857 0.00 0.00 0.00 3.36
188 189 3.525800 AAATAAGCGGGGCAATATCCT 57.474 42.857 0.00 0.00 0.00 3.24
189 190 4.038642 TGAAAAATAAGCGGGGCAATATCC 59.961 41.667 0.00 0.00 0.00 2.59
190 191 5.195001 TGAAAAATAAGCGGGGCAATATC 57.805 39.130 0.00 0.00 0.00 1.63
191 192 5.600696 CTTGAAAAATAAGCGGGGCAATAT 58.399 37.500 0.00 0.00 0.00 1.28
192 193 4.679372 GCTTGAAAAATAAGCGGGGCAATA 60.679 41.667 0.00 0.00 40.83 1.90
193 194 3.860641 CTTGAAAAATAAGCGGGGCAAT 58.139 40.909 0.00 0.00 0.00 3.56
194 195 2.611722 GCTTGAAAAATAAGCGGGGCAA 60.612 45.455 0.00 0.00 40.83 4.52
195 196 1.067213 GCTTGAAAAATAAGCGGGGCA 60.067 47.619 0.00 0.00 40.83 5.36
196 197 1.640428 GCTTGAAAAATAAGCGGGGC 58.360 50.000 0.00 0.00 40.83 5.80
202 203 8.661352 TTCCTTTTTGAGGCTTGAAAAATAAG 57.339 30.769 6.40 0.44 45.87 1.73
203 204 8.482128 TCTTCCTTTTTGAGGCTTGAAAAATAA 58.518 29.630 6.40 4.35 45.87 1.40
204 205 8.017418 TCTTCCTTTTTGAGGCTTGAAAAATA 57.983 30.769 6.40 0.00 45.87 1.40
205 206 6.888105 TCTTCCTTTTTGAGGCTTGAAAAAT 58.112 32.000 6.40 0.00 45.87 1.82
206 207 6.154363 TCTCTTCCTTTTTGAGGCTTGAAAAA 59.846 34.615 5.85 5.85 45.87 1.94
207 208 5.656416 TCTCTTCCTTTTTGAGGCTTGAAAA 59.344 36.000 8.17 8.17 45.87 2.29
208 209 5.200483 TCTCTTCCTTTTTGAGGCTTGAAA 58.800 37.500 0.00 0.00 45.87 2.69
209 210 4.792068 TCTCTTCCTTTTTGAGGCTTGAA 58.208 39.130 0.00 0.00 45.87 2.69
210 211 4.437682 TCTCTTCCTTTTTGAGGCTTGA 57.562 40.909 0.00 0.00 45.87 3.02
211 212 4.142730 CGATCTCTTCCTTTTTGAGGCTTG 60.143 45.833 0.00 0.00 45.87 4.01
212 213 4.006319 CGATCTCTTCCTTTTTGAGGCTT 58.994 43.478 0.00 0.00 45.87 4.35
213 214 3.261897 TCGATCTCTTCCTTTTTGAGGCT 59.738 43.478 0.00 0.00 45.87 4.58
214 215 3.372514 GTCGATCTCTTCCTTTTTGAGGC 59.627 47.826 0.00 0.00 45.87 4.70
216 217 3.061429 GCGTCGATCTCTTCCTTTTTGAG 59.939 47.826 0.00 0.00 0.00 3.02
217 218 2.993899 GCGTCGATCTCTTCCTTTTTGA 59.006 45.455 0.00 0.00 0.00 2.69
218 219 2.996621 AGCGTCGATCTCTTCCTTTTTG 59.003 45.455 0.00 0.00 0.00 2.44
219 220 3.320673 AGCGTCGATCTCTTCCTTTTT 57.679 42.857 0.00 0.00 0.00 1.94
220 221 3.254892 GAAGCGTCGATCTCTTCCTTTT 58.745 45.455 0.00 0.00 33.32 2.27
221 222 2.882324 GAAGCGTCGATCTCTTCCTTT 58.118 47.619 0.00 0.00 33.32 3.11
222 223 2.570442 GAAGCGTCGATCTCTTCCTT 57.430 50.000 0.00 0.00 33.32 3.36
235 236 3.591254 GAAGGGCCTGACGAAGCGT 62.591 63.158 6.92 0.00 45.10 5.07
236 237 2.815647 GAAGGGCCTGACGAAGCG 60.816 66.667 6.92 0.00 0.00 4.68
237 238 2.815647 CGAAGGGCCTGACGAAGC 60.816 66.667 22.94 1.25 0.00 3.86
238 239 1.153745 CTCGAAGGGCCTGACGAAG 60.154 63.158 27.18 19.82 34.50 3.79
239 240 2.646175 CCTCGAAGGGCCTGACGAA 61.646 63.158 27.18 16.16 34.50 3.85
240 241 3.068691 CCTCGAAGGGCCTGACGA 61.069 66.667 26.22 26.22 0.00 4.20
249 250 0.685097 TCCAAGTGTTCCCTCGAAGG 59.315 55.000 0.00 0.00 34.30 3.46
250 251 2.028112 TCATCCAAGTGTTCCCTCGAAG 60.028 50.000 0.00 0.00 0.00 3.79
251 252 1.974957 TCATCCAAGTGTTCCCTCGAA 59.025 47.619 0.00 0.00 0.00 3.71
252 253 1.275291 GTCATCCAAGTGTTCCCTCGA 59.725 52.381 0.00 0.00 0.00 4.04
253 254 1.676014 GGTCATCCAAGTGTTCCCTCG 60.676 57.143 0.00 0.00 0.00 4.63
254 255 1.340114 GGGTCATCCAAGTGTTCCCTC 60.340 57.143 0.00 0.00 34.29 4.30
255 256 0.698818 GGGTCATCCAAGTGTTCCCT 59.301 55.000 0.00 0.00 34.29 4.20
256 257 0.404040 TGGGTCATCCAAGTGTTCCC 59.596 55.000 0.00 0.00 43.84 3.97
268 269 2.025605 AGTCATGCTTGATGTGGGTCAT 60.026 45.455 5.49 0.00 39.77 3.06
269 270 1.352017 AGTCATGCTTGATGTGGGTCA 59.648 47.619 5.49 0.00 33.56 4.02
270 271 2.012673 GAGTCATGCTTGATGTGGGTC 58.987 52.381 5.49 0.00 33.56 4.46
271 272 1.632409 AGAGTCATGCTTGATGTGGGT 59.368 47.619 5.49 0.00 33.56 4.51
272 273 2.414994 AGAGTCATGCTTGATGTGGG 57.585 50.000 5.49 0.00 33.56 4.61
273 274 4.880120 ACAATAGAGTCATGCTTGATGTGG 59.120 41.667 5.49 0.00 33.56 4.17
274 275 5.816258 AGACAATAGAGTCATGCTTGATGTG 59.184 40.000 5.49 1.71 40.98 3.21
275 276 5.987098 AGACAATAGAGTCATGCTTGATGT 58.013 37.500 5.49 4.91 40.98 3.06
276 277 6.201234 CAGAGACAATAGAGTCATGCTTGATG 59.799 42.308 5.49 1.72 40.98 3.07
277 278 6.127111 ACAGAGACAATAGAGTCATGCTTGAT 60.127 38.462 5.49 0.00 40.98 2.57
278 279 5.186603 ACAGAGACAATAGAGTCATGCTTGA 59.813 40.000 0.00 0.00 40.98 3.02
279 280 5.417811 ACAGAGACAATAGAGTCATGCTTG 58.582 41.667 0.00 0.00 40.98 4.01
280 281 5.659463 GACAGAGACAATAGAGTCATGCTT 58.341 41.667 0.00 0.00 40.98 3.91
281 282 4.202000 CGACAGAGACAATAGAGTCATGCT 60.202 45.833 0.00 0.00 40.98 3.79
282 283 4.041049 CGACAGAGACAATAGAGTCATGC 58.959 47.826 0.00 0.00 40.98 4.06
283 284 4.041049 GCGACAGAGACAATAGAGTCATG 58.959 47.826 0.00 0.00 40.98 3.07
284 285 3.696548 TGCGACAGAGACAATAGAGTCAT 59.303 43.478 0.00 0.00 40.98 3.06
285 286 3.081804 TGCGACAGAGACAATAGAGTCA 58.918 45.455 0.00 0.00 40.98 3.41
286 287 3.119814 TGTGCGACAGAGACAATAGAGTC 60.120 47.826 0.00 0.00 38.81 3.36
287 288 2.820197 TGTGCGACAGAGACAATAGAGT 59.180 45.455 0.00 0.00 0.00 3.24
288 289 3.175152 GTGTGCGACAGAGACAATAGAG 58.825 50.000 0.00 0.00 0.00 2.43
289 290 2.556622 TGTGTGCGACAGAGACAATAGA 59.443 45.455 0.00 0.00 0.00 1.98
290 291 2.946564 TGTGTGCGACAGAGACAATAG 58.053 47.619 0.00 0.00 0.00 1.73
291 292 3.056891 TGATGTGTGCGACAGAGACAATA 60.057 43.478 0.00 0.00 38.23 1.90
292 293 2.289010 TGATGTGTGCGACAGAGACAAT 60.289 45.455 0.00 0.00 38.23 2.71
293 294 1.068434 TGATGTGTGCGACAGAGACAA 59.932 47.619 0.00 0.00 38.23 3.18
294 295 0.673437 TGATGTGTGCGACAGAGACA 59.327 50.000 0.00 0.00 38.23 3.41
295 296 1.068264 TCTGATGTGTGCGACAGAGAC 60.068 52.381 0.00 0.00 38.23 3.36
296 297 1.247567 TCTGATGTGTGCGACAGAGA 58.752 50.000 0.00 0.00 38.23 3.10
297 298 1.626747 CTCTGATGTGTGCGACAGAG 58.373 55.000 0.00 0.00 46.12 3.35
298 299 1.247567 TCTCTGATGTGTGCGACAGA 58.752 50.000 0.00 0.00 38.23 3.41
299 300 1.723542 GTTCTCTGATGTGTGCGACAG 59.276 52.381 0.00 0.00 38.23 3.51
300 301 1.783284 GTTCTCTGATGTGTGCGACA 58.217 50.000 0.00 0.00 39.53 4.35
301 302 0.710567 CGTTCTCTGATGTGTGCGAC 59.289 55.000 0.00 0.00 0.00 5.19
302 303 0.313987 ACGTTCTCTGATGTGTGCGA 59.686 50.000 0.00 0.00 0.00 5.10
303 304 1.139989 AACGTTCTCTGATGTGTGCG 58.860 50.000 0.00 0.00 0.00 5.34
304 305 2.802816 AGAAACGTTCTCTGATGTGTGC 59.197 45.455 0.00 0.00 34.07 4.57
315 316 1.226746 CCCAAAGCGAGAAACGTTCT 58.773 50.000 0.00 0.00 44.21 3.01
316 317 0.385598 GCCCAAAGCGAGAAACGTTC 60.386 55.000 0.00 0.00 44.60 3.95
317 318 1.652563 GCCCAAAGCGAGAAACGTT 59.347 52.632 0.00 0.00 44.60 3.99
318 319 3.340789 GCCCAAAGCGAGAAACGT 58.659 55.556 0.00 0.00 44.60 3.99
327 328 0.389426 CATGCACAAGAGCCCAAAGC 60.389 55.000 0.00 0.00 44.25 3.51
328 329 1.068055 GTCATGCACAAGAGCCCAAAG 60.068 52.381 0.00 0.00 0.00 2.77
329 330 0.961019 GTCATGCACAAGAGCCCAAA 59.039 50.000 0.00 0.00 0.00 3.28
330 331 0.111061 AGTCATGCACAAGAGCCCAA 59.889 50.000 0.00 0.00 0.00 4.12
331 332 0.111061 AAGTCATGCACAAGAGCCCA 59.889 50.000 0.00 0.00 0.00 5.36
332 333 0.807496 GAAGTCATGCACAAGAGCCC 59.193 55.000 0.00 0.00 0.00 5.19
333 334 0.807496 GGAAGTCATGCACAAGAGCC 59.193 55.000 0.00 0.00 0.00 4.70
334 335 1.527034 TGGAAGTCATGCACAAGAGC 58.473 50.000 0.00 0.00 0.00 4.09
335 336 3.607741 AGATGGAAGTCATGCACAAGAG 58.392 45.455 0.00 0.00 35.97 2.85
336 337 3.708403 AGATGGAAGTCATGCACAAGA 57.292 42.857 0.00 0.00 35.97 3.02
337 338 3.754850 TCAAGATGGAAGTCATGCACAAG 59.245 43.478 0.00 0.00 35.97 3.16
338 339 3.503363 GTCAAGATGGAAGTCATGCACAA 59.497 43.478 0.00 0.00 35.97 3.33
339 340 3.076621 GTCAAGATGGAAGTCATGCACA 58.923 45.455 0.00 0.00 35.97 4.57
340 341 2.094894 CGTCAAGATGGAAGTCATGCAC 59.905 50.000 0.00 0.00 35.97 4.57
341 342 2.028203 TCGTCAAGATGGAAGTCATGCA 60.028 45.455 0.00 0.00 35.97 3.96
342 343 2.621338 TCGTCAAGATGGAAGTCATGC 58.379 47.619 0.00 0.00 35.97 4.06
343 344 4.269603 GTGATCGTCAAGATGGAAGTCATG 59.730 45.833 0.00 0.00 40.26 3.07
344 345 4.437239 GTGATCGTCAAGATGGAAGTCAT 58.563 43.478 0.00 0.00 40.26 3.06
345 346 3.673323 CGTGATCGTCAAGATGGAAGTCA 60.673 47.826 0.00 0.00 40.26 3.41
346 347 2.854777 CGTGATCGTCAAGATGGAAGTC 59.145 50.000 0.00 0.00 40.26 3.01
347 348 2.881074 CGTGATCGTCAAGATGGAAGT 58.119 47.619 0.00 0.00 40.26 3.01
367 368 5.427036 TTCCAAACAATGTCGTCCTAAAC 57.573 39.130 0.00 0.00 0.00 2.01
368 369 4.023536 GCTTCCAAACAATGTCGTCCTAAA 60.024 41.667 0.00 0.00 0.00 1.85
369 370 3.500680 GCTTCCAAACAATGTCGTCCTAA 59.499 43.478 0.00 0.00 0.00 2.69
370 371 3.071479 GCTTCCAAACAATGTCGTCCTA 58.929 45.455 0.00 0.00 0.00 2.94
371 372 1.880027 GCTTCCAAACAATGTCGTCCT 59.120 47.619 0.00 0.00 0.00 3.85
372 373 1.606668 TGCTTCCAAACAATGTCGTCC 59.393 47.619 0.00 0.00 0.00 4.79
373 374 3.236816 CATGCTTCCAAACAATGTCGTC 58.763 45.455 0.00 0.00 0.00 4.20
374 375 2.607771 GCATGCTTCCAAACAATGTCGT 60.608 45.455 11.37 0.00 0.00 4.34
375 376 1.987770 GCATGCTTCCAAACAATGTCG 59.012 47.619 11.37 0.00 0.00 4.35
376 377 2.991190 CAGCATGCTTCCAAACAATGTC 59.009 45.455 19.98 0.00 0.00 3.06
377 378 2.629137 TCAGCATGCTTCCAAACAATGT 59.371 40.909 19.98 0.00 34.76 2.71
378 379 3.306917 TCAGCATGCTTCCAAACAATG 57.693 42.857 19.98 3.44 34.76 2.82
379 380 3.512329 TCATCAGCATGCTTCCAAACAAT 59.488 39.130 19.98 0.00 34.76 2.71
380 381 2.892215 TCATCAGCATGCTTCCAAACAA 59.108 40.909 19.98 0.00 34.76 2.83
381 382 2.516906 TCATCAGCATGCTTCCAAACA 58.483 42.857 19.98 0.00 34.76 2.83
382 383 3.129813 TCATCATCAGCATGCTTCCAAAC 59.870 43.478 19.98 0.00 34.76 2.93
383 384 3.358118 TCATCATCAGCATGCTTCCAAA 58.642 40.909 19.98 3.06 34.76 3.28
384 385 2.949644 CTCATCATCAGCATGCTTCCAA 59.050 45.455 19.98 4.66 34.76 3.53
385 386 2.572290 CTCATCATCAGCATGCTTCCA 58.428 47.619 19.98 5.22 34.76 3.53
386 387 1.267261 GCTCATCATCAGCATGCTTCC 59.733 52.381 19.98 0.00 36.82 3.46
387 388 1.947456 TGCTCATCATCAGCATGCTTC 59.053 47.619 19.98 0.00 42.09 3.86
388 389 1.950216 CTGCTCATCATCAGCATGCTT 59.050 47.619 19.98 0.50 45.81 3.91
389 390 1.134068 ACTGCTCATCATCAGCATGCT 60.134 47.619 16.30 16.30 45.81 3.79
390 391 1.309950 ACTGCTCATCATCAGCATGC 58.690 50.000 10.51 10.51 45.81 4.06
391 392 4.143094 CGAATACTGCTCATCATCAGCATG 60.143 45.833 0.00 0.00 45.81 4.06
392 393 3.995048 CGAATACTGCTCATCATCAGCAT 59.005 43.478 0.00 0.00 45.81 3.79
393 394 3.387397 CGAATACTGCTCATCATCAGCA 58.613 45.455 0.00 0.00 44.80 4.41
394 395 2.735663 CCGAATACTGCTCATCATCAGC 59.264 50.000 0.00 0.00 37.40 4.26
395 396 2.735663 GCCGAATACTGCTCATCATCAG 59.264 50.000 0.00 0.00 36.45 2.90
396 397 2.759191 GCCGAATACTGCTCATCATCA 58.241 47.619 0.00 0.00 0.00 3.07
397 398 1.723542 CGCCGAATACTGCTCATCATC 59.276 52.381 0.00 0.00 0.00 2.92
398 399 1.606480 CCGCCGAATACTGCTCATCAT 60.606 52.381 0.00 0.00 0.00 2.45
399 400 0.249447 CCGCCGAATACTGCTCATCA 60.249 55.000 0.00 0.00 0.00 3.07
400 401 1.560860 GCCGCCGAATACTGCTCATC 61.561 60.000 0.00 0.00 0.00 2.92
401 402 1.595382 GCCGCCGAATACTGCTCAT 60.595 57.895 0.00 0.00 0.00 2.90
402 403 2.202878 GCCGCCGAATACTGCTCA 60.203 61.111 0.00 0.00 0.00 4.26
403 404 2.967615 GGCCGCCGAATACTGCTC 60.968 66.667 0.00 0.00 0.00 4.26
404 405 3.781307 TGGCCGCCGAATACTGCT 61.781 61.111 4.58 0.00 0.00 4.24
405 406 3.573491 GTGGCCGCCGAATACTGC 61.573 66.667 4.45 0.00 0.00 4.40
406 407 2.125310 TGTGGCCGCCGAATACTG 60.125 61.111 15.15 0.00 0.00 2.74
407 408 2.186903 CTGTGGCCGCCGAATACT 59.813 61.111 15.15 0.00 0.00 2.12
408 409 3.573491 GCTGTGGCCGCCGAATAC 61.573 66.667 15.15 0.00 0.00 1.89
409 410 2.034048 TATGCTGTGGCCGCCGAATA 62.034 55.000 15.15 9.25 37.74 1.75
410 411 2.680974 ATATGCTGTGGCCGCCGAAT 62.681 55.000 15.15 10.42 37.74 3.34
411 412 2.034048 TATATGCTGTGGCCGCCGAA 62.034 55.000 15.15 1.17 37.74 4.30
412 413 2.034048 TTATATGCTGTGGCCGCCGA 62.034 55.000 15.15 0.00 37.74 5.54
413 414 1.163420 TTTATATGCTGTGGCCGCCG 61.163 55.000 15.15 8.91 37.74 6.46
414 415 0.593128 CTTTATATGCTGTGGCCGCC 59.407 55.000 15.15 1.04 37.74 6.13
415 416 0.040067 GCTTTATATGCTGTGGCCGC 60.040 55.000 10.11 10.11 37.74 6.53
416 417 0.235665 CGCTTTATATGCTGTGGCCG 59.764 55.000 0.00 0.00 37.74 6.13
417 418 0.040067 GCGCTTTATATGCTGTGGCC 60.040 55.000 0.00 0.00 37.74 5.36
418 419 0.662619 TGCGCTTTATATGCTGTGGC 59.337 50.000 9.73 0.00 39.26 5.01
419 420 3.631145 ATTGCGCTTTATATGCTGTGG 57.369 42.857 9.73 0.00 0.00 4.17
420 421 3.976942 GGAATTGCGCTTTATATGCTGTG 59.023 43.478 9.73 0.00 0.00 3.66
421 422 3.885297 AGGAATTGCGCTTTATATGCTGT 59.115 39.130 9.73 0.00 0.00 4.40
422 423 4.494350 AGGAATTGCGCTTTATATGCTG 57.506 40.909 9.73 0.00 0.00 4.41
423 424 4.863491 CAAGGAATTGCGCTTTATATGCT 58.137 39.130 9.73 0.00 0.00 3.79
728 729 7.279758 AGCTGCAGTGAGAGAGATTTATTTAAC 59.720 37.037 16.64 0.00 0.00 2.01
804 805 3.254024 TTGGTGGCGAGGGAAGCTC 62.254 63.158 0.00 0.00 34.52 4.09
838 839 9.890629 AGTCATTTTATCTTATCAGTTGCTACA 57.109 29.630 0.13 0.00 0.00 2.74
894 897 2.440409 TGCTTCTTCTCCAAGAATGGC 58.560 47.619 0.00 0.83 45.70 4.40
964 969 2.959030 TCAGATACGCTTGCTAGGACAT 59.041 45.455 0.00 0.00 0.00 3.06
965 970 2.375146 TCAGATACGCTTGCTAGGACA 58.625 47.619 0.00 0.00 0.00 4.02
1350 1355 5.705609 TTTTTCTTCAATGGTGGTAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
1369 1374 5.562298 TCCTACCTAGCAGAACTGTTTTT 57.438 39.130 0.00 0.00 0.00 1.94
1370 1375 5.763876 ATCCTACCTAGCAGAACTGTTTT 57.236 39.130 0.00 0.00 0.00 2.43
1371 1376 5.958987 AGTATCCTACCTAGCAGAACTGTTT 59.041 40.000 0.00 0.00 0.00 2.83
1372 1377 5.520751 AGTATCCTACCTAGCAGAACTGTT 58.479 41.667 0.00 0.00 0.00 3.16
1373 1378 5.132043 AGTATCCTACCTAGCAGAACTGT 57.868 43.478 3.77 0.00 0.00 3.55
1374 1379 5.699097 GAGTATCCTACCTAGCAGAACTG 57.301 47.826 0.00 0.00 0.00 3.16
1408 1413 8.654485 TTATATTTTGCTACGGAGGGAGTATA 57.346 34.615 0.00 0.00 0.00 1.47
1442 1447 8.963130 CGTTTTTACATCTTAATTTGAACTGCA 58.037 29.630 0.00 0.00 0.00 4.41
1443 1448 8.964150 ACGTTTTTACATCTTAATTTGAACTGC 58.036 29.630 0.00 0.00 0.00 4.40
1467 1472 8.943002 ACTTCCTTTGTACCAAAATATAAGACG 58.057 33.333 0.00 0.00 0.00 4.18
1495 1500 9.187996 TCAATGTCCAACACAATATGTATGATT 57.812 29.630 0.00 0.00 42.31 2.57
1517 1522 9.784531 ATATTCTACGGTTGAGATCAATTCAAT 57.215 29.630 0.00 0.00 38.24 2.57
1599 1613 7.982354 AGCTGATAATAATATCTTTAGACCGGC 59.018 37.037 0.00 0.00 38.99 6.13
1714 1732 8.677148 AGCACTAAATGAAGAAAGTTGTTAGA 57.323 30.769 0.00 0.00 0.00 2.10
1717 1735 7.771183 TCAAGCACTAAATGAAGAAAGTTGTT 58.229 30.769 0.00 0.00 0.00 2.83
1722 1740 6.740002 CGACATCAAGCACTAAATGAAGAAAG 59.260 38.462 0.00 0.00 0.00 2.62
1748 1766 2.358615 CCACAGCGCTAGCCACAA 60.359 61.111 10.99 0.00 46.67 3.33
1774 1795 2.050144 ACAAAGACCTTCTGCTCCTCA 58.950 47.619 0.00 0.00 0.00 3.86
1818 1839 4.082523 GCTGCGCCTCCACTACCA 62.083 66.667 4.18 0.00 0.00 3.25
1820 1841 2.202810 GAGCTGCGCCTCCACTAC 60.203 66.667 4.18 0.00 0.00 2.73
1908 1929 2.747460 GCATCACGCTTGCCCAGA 60.747 61.111 0.00 0.00 37.77 3.86
1936 1957 1.892819 CTGTCATCACGCTCACCCCT 61.893 60.000 0.00 0.00 0.00 4.79
2005 2026 0.761187 AGCACTCCTTGACAGCTTCA 59.239 50.000 0.00 0.00 29.98 3.02
2295 2328 0.733150 GATTTGCAACTAGGGCCGTC 59.267 55.000 0.00 0.00 0.00 4.79
2364 2413 1.763545 GGGGGTTAAAGTTGCAACCAA 59.236 47.619 25.62 14.41 45.03 3.67
2448 2497 5.121611 ACACACATCATGTACAACATTACCG 59.878 40.000 0.00 0.00 40.64 4.02
2450 2499 7.364522 AGACACACATCATGTACAACATTAC 57.635 36.000 0.00 0.00 40.64 1.89
2550 2599 9.838339 CCTGTTTCATAACCTCTATAACAGAAT 57.162 33.333 12.22 0.00 41.99 2.40
2554 2605 7.365295 GGGACCTGTTTCATAACCTCTATAACA 60.365 40.741 0.00 0.00 33.15 2.41
2658 2709 6.011981 TGGTCCAATTAGAGACTACCCAAAAT 60.012 38.462 0.00 0.00 33.39 1.82
2668 2720 6.821388 ACATATCACTGGTCCAATTAGAGAC 58.179 40.000 0.00 0.00 0.00 3.36
2819 2871 1.377333 GCTAGCCCACCAAGACCAC 60.377 63.158 2.29 0.00 0.00 4.16
2839 2891 6.388619 AGGAATTGTGTAAGACATAACCCT 57.611 37.500 6.23 6.23 32.11 4.34
2864 2916 7.610305 TGTACAAGCCCCTTAGAAAAATAGAAG 59.390 37.037 0.00 0.00 0.00 2.85
2938 2990 8.748412 AGATAGCTGTTTTTGCACCAATATTAA 58.252 29.630 0.00 0.00 0.00 1.40
2972 3024 7.120138 ACTCACTAACCACGAAGAAAAAGAAAA 59.880 33.333 0.00 0.00 0.00 2.29
2996 3048 0.887247 TGTGTGTTTTGTGCAGCACT 59.113 45.000 25.83 0.00 35.11 4.40
3001 3053 3.931468 CCAAAAGATGTGTGTTTTGTGCA 59.069 39.130 9.09 0.00 43.36 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.