Multiple sequence alignment - TraesCS3B01G537200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G537200 chr3B 100.000 5780 0 0 1 5780 777040860 777035081 0.000000e+00 10674
1 TraesCS3B01G537200 chr3B 92.788 208 15 0 5355 5562 807479769 807479976 9.410000e-78 302
2 TraesCS3B01G537200 chr4B 99.122 5355 44 3 1 5354 445327637 445332989 0.000000e+00 9625
3 TraesCS3B01G537200 chr4B 99.029 5357 48 4 1 5355 622888002 622882648 0.000000e+00 9601
4 TraesCS3B01G537200 chr4B 92.523 214 14 2 5349 5561 670986908 670986696 7.280000e-79 305
5 TraesCS3B01G537200 chr6A 99.067 5358 44 5 1 5355 46108522 46113876 0.000000e+00 9612
6 TraesCS3B01G537200 chr6A 99.100 2999 22 4 1 2995 46139438 46142435 0.000000e+00 5384
7 TraesCS3B01G537200 chr6A 99.034 932 8 1 4424 5355 46114727 46115657 0.000000e+00 1670
8 TraesCS3B01G537200 chr2A 99.103 4794 40 2 564 5354 171835557 171840350 0.000000e+00 8612
9 TraesCS3B01G537200 chr2B 98.958 4798 45 4 564 5358 93121446 93126241 0.000000e+00 8578
10 TraesCS3B01G537200 chrUn 98.127 4164 73 4 1192 5354 269555829 269559988 0.000000e+00 7252
11 TraesCS3B01G537200 chr5A 98.903 3737 40 1 1620 5355 617311019 617307283 0.000000e+00 6673
12 TraesCS3B01G537200 chr6D 96.388 3045 93 13 1717 4754 360751640 360748606 0.000000e+00 4998
13 TraesCS3B01G537200 chr6D 97.657 1707 38 1 1 1705 360753422 360751716 0.000000e+00 2929
14 TraesCS3B01G537200 chr1D 95.796 3045 112 7 1717 4754 485426288 485423253 0.000000e+00 4900
15 TraesCS3B01G537200 chr1D 97.957 1713 27 5 1 1712 42044382 42042677 0.000000e+00 2963
16 TraesCS3B01G537200 chr1D 97.548 1713 36 3 1 1712 162593990 162595697 0.000000e+00 2926
17 TraesCS3B01G537200 chr1D 96.352 603 22 0 4752 5354 485423217 485422615 0.000000e+00 992
18 TraesCS3B01G537200 chr5D 94.258 209 11 1 5355 5562 481672061 481672269 9.350000e-83 318
19 TraesCS3B01G537200 chr5D 92.788 208 15 0 5355 5562 254387929 254387722 9.410000e-78 302
20 TraesCS3B01G537200 chr5B 93.720 207 13 0 5355 5561 101860561 101860355 1.560000e-80 311
21 TraesCS3B01G537200 chr5B 93.237 207 14 0 5355 5561 75663363 75663569 7.280000e-79 305
22 TraesCS3B01G537200 chr5B 93.237 207 14 0 5355 5561 373072619 373072825 7.280000e-79 305
23 TraesCS3B01G537200 chr4D 93.269 208 14 0 5355 5562 491779833 491779626 2.020000e-79 307
24 TraesCS3B01G537200 chr7B 92.754 207 15 0 5355 5561 42366937 42367143 3.390000e-77 300
25 TraesCS3B01G537200 chr3D 85.845 219 30 1 5562 5780 581456823 581457040 1.250000e-56 231
26 TraesCS3B01G537200 chr3D 87.302 126 16 0 5655 5780 581505634 581505759 1.680000e-30 145
27 TraesCS3B01G537200 chr3A 84.375 128 20 0 5653 5780 716567369 716567242 6.080000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G537200 chr3B 777035081 777040860 5779 True 10674.0 10674 100.0000 1 5780 1 chr3B.!!$R1 5779
1 TraesCS3B01G537200 chr4B 445327637 445332989 5352 False 9625.0 9625 99.1220 1 5354 1 chr4B.!!$F1 5353
2 TraesCS3B01G537200 chr4B 622882648 622888002 5354 True 9601.0 9601 99.0290 1 5355 1 chr4B.!!$R1 5354
3 TraesCS3B01G537200 chr6A 46108522 46115657 7135 False 5641.0 9612 99.0505 1 5355 2 chr6A.!!$F2 5354
4 TraesCS3B01G537200 chr6A 46139438 46142435 2997 False 5384.0 5384 99.1000 1 2995 1 chr6A.!!$F1 2994
5 TraesCS3B01G537200 chr2A 171835557 171840350 4793 False 8612.0 8612 99.1030 564 5354 1 chr2A.!!$F1 4790
6 TraesCS3B01G537200 chr2B 93121446 93126241 4795 False 8578.0 8578 98.9580 564 5358 1 chr2B.!!$F1 4794
7 TraesCS3B01G537200 chrUn 269555829 269559988 4159 False 7252.0 7252 98.1270 1192 5354 1 chrUn.!!$F1 4162
8 TraesCS3B01G537200 chr5A 617307283 617311019 3736 True 6673.0 6673 98.9030 1620 5355 1 chr5A.!!$R1 3735
9 TraesCS3B01G537200 chr6D 360748606 360753422 4816 True 3963.5 4998 97.0225 1 4754 2 chr6D.!!$R1 4753
10 TraesCS3B01G537200 chr1D 42042677 42044382 1705 True 2963.0 2963 97.9570 1 1712 1 chr1D.!!$R1 1711
11 TraesCS3B01G537200 chr1D 485422615 485426288 3673 True 2946.0 4900 96.0740 1717 5354 2 chr1D.!!$R2 3637
12 TraesCS3B01G537200 chr1D 162593990 162595697 1707 False 2926.0 2926 97.5480 1 1712 1 chr1D.!!$F1 1711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 735 1.001406 ACTGAGCCAAGAAAGGAGTCG 59.999 52.381 0.00 0.00 0.00 4.18 F
1974 2044 0.392336 GATGGTTTTTGGCAGTGGCA 59.608 50.000 16.56 16.56 43.71 4.92 F
3576 3651 1.135575 GCCTACAGTTGTCATGCTTGC 60.136 52.381 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2215 1.068121 AGCTTCCTTAGTTGGCCAGT 58.932 50.000 5.11 0.00 0.00 4.00 R
3607 3682 3.845781 AACAGGGCATATGTACAGAGG 57.154 47.619 0.33 0.00 0.00 3.69 R
5514 7414 0.322975 CCTTCTGTCAGTGACCCTGG 59.677 60.000 20.43 12.82 41.83 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
733 735 1.001406 ACTGAGCCAAGAAAGGAGTCG 59.999 52.381 0.00 0.00 0.00 4.18
1974 2044 0.392336 GATGGTTTTTGGCAGTGGCA 59.608 50.000 16.56 16.56 43.71 4.92
2144 2215 3.421394 AGAGGATGAGGATGGTAACCA 57.579 47.619 0.00 0.00 38.19 3.67
2276 2347 9.758651 GTTATCTTTAACCAACAAAAGGAACAT 57.241 29.630 0.00 0.00 33.65 2.71
2736 2809 3.808466 AATCATCTACGAAGCAGCAGA 57.192 42.857 0.00 0.00 0.00 4.26
2855 2928 2.093235 GTGCAATCTGCTAAGGAGGAGT 60.093 50.000 0.00 0.00 45.31 3.85
2869 2942 4.595986 AGGAGGAGTGTCTAGAAAGAGAC 58.404 47.826 0.00 0.00 44.43 3.36
3576 3651 1.135575 GCCTACAGTTGTCATGCTTGC 60.136 52.381 0.00 0.00 0.00 4.01
3607 3682 5.059404 ACATATGCCTTGTTTGCTTGTAC 57.941 39.130 1.58 0.00 0.00 2.90
3816 3891 5.509498 TGAAAGCATTTAGGCTAACCATCT 58.491 37.500 6.43 0.00 45.07 2.90
3836 3911 7.282450 ACCATCTGGAATATTTTTCTTACGGAC 59.718 37.037 2.55 0.00 38.94 4.79
3903 3981 9.836076 CCTCTGTACATATGCATTTCAATTATG 57.164 33.333 3.54 2.89 0.00 1.90
3962 4040 4.025061 CACATGCTGCTAGTTTATGCTCTC 60.025 45.833 0.00 0.00 0.00 3.20
4278 4359 5.046520 AGTTTGATCCCTGTAGGTCACTTAC 60.047 44.000 0.00 0.00 36.75 2.34
4902 5022 3.821033 GTGTTTGCTCACCCTTGACTAAT 59.179 43.478 0.00 0.00 32.81 1.73
5119 5239 0.782384 CCGTCGGCTATAAATGTCGC 59.218 55.000 0.00 0.00 0.00 5.19
5364 7264 9.145865 GAAATATCTAGTAGTGAATAAGGCAGC 57.854 37.037 0.00 0.00 0.00 5.25
5365 7265 4.569761 TCTAGTAGTGAATAAGGCAGCG 57.430 45.455 0.00 0.00 0.00 5.18
5366 7266 2.604046 AGTAGTGAATAAGGCAGCGG 57.396 50.000 0.00 0.00 0.00 5.52
5367 7267 2.108168 AGTAGTGAATAAGGCAGCGGA 58.892 47.619 0.00 0.00 0.00 5.54
5368 7268 2.500098 AGTAGTGAATAAGGCAGCGGAA 59.500 45.455 0.00 0.00 0.00 4.30
5369 7269 1.739067 AGTGAATAAGGCAGCGGAAC 58.261 50.000 0.00 0.00 0.00 3.62
5370 7270 1.003118 AGTGAATAAGGCAGCGGAACA 59.997 47.619 0.00 0.00 0.00 3.18
5371 7271 1.398390 GTGAATAAGGCAGCGGAACAG 59.602 52.381 0.00 0.00 0.00 3.16
5372 7272 1.003118 TGAATAAGGCAGCGGAACAGT 59.997 47.619 0.00 0.00 0.00 3.55
5373 7273 1.398390 GAATAAGGCAGCGGAACAGTG 59.602 52.381 0.00 0.00 0.00 3.66
5374 7274 1.026718 ATAAGGCAGCGGAACAGTGC 61.027 55.000 0.00 0.00 36.42 4.40
5375 7275 2.111999 TAAGGCAGCGGAACAGTGCT 62.112 55.000 0.00 0.00 43.58 4.40
5379 7279 3.142393 AGCGGAACAGTGCTGTCT 58.858 55.556 5.22 0.00 44.13 3.41
5380 7280 1.301244 AGCGGAACAGTGCTGTCTG 60.301 57.895 5.22 5.93 44.13 3.51
5381 7281 2.959357 GCGGAACAGTGCTGTCTGC 61.959 63.158 5.22 11.24 44.13 4.26
5382 7282 1.301244 CGGAACAGTGCTGTCTGCT 60.301 57.895 5.22 0.00 44.13 4.24
5383 7283 0.882042 CGGAACAGTGCTGTCTGCTT 60.882 55.000 5.22 0.00 44.13 3.91
5384 7284 1.312815 GGAACAGTGCTGTCTGCTTT 58.687 50.000 5.22 0.00 44.13 3.51
5385 7285 2.494059 GGAACAGTGCTGTCTGCTTTA 58.506 47.619 5.22 0.00 44.13 1.85
5386 7286 3.077359 GGAACAGTGCTGTCTGCTTTAT 58.923 45.455 5.22 0.00 44.13 1.40
5387 7287 3.120060 GGAACAGTGCTGTCTGCTTTATG 60.120 47.826 5.22 0.15 44.13 1.90
5388 7288 3.407424 ACAGTGCTGTCTGCTTTATGA 57.593 42.857 0.00 0.00 40.24 2.15
5389 7289 3.070018 ACAGTGCTGTCTGCTTTATGAC 58.930 45.455 0.00 0.00 40.24 3.06
5390 7290 2.417933 CAGTGCTGTCTGCTTTATGACC 59.582 50.000 3.20 0.00 43.37 4.02
5391 7291 2.038952 AGTGCTGTCTGCTTTATGACCA 59.961 45.455 3.20 0.00 43.37 4.02
5392 7292 2.813754 GTGCTGTCTGCTTTATGACCAA 59.186 45.455 3.20 0.00 43.37 3.67
5393 7293 3.441572 GTGCTGTCTGCTTTATGACCAAT 59.558 43.478 3.20 0.00 43.37 3.16
5394 7294 4.081406 TGCTGTCTGCTTTATGACCAATT 58.919 39.130 3.20 0.00 43.37 2.32
5395 7295 4.156556 TGCTGTCTGCTTTATGACCAATTC 59.843 41.667 3.20 0.00 43.37 2.17
5396 7296 4.728882 GCTGTCTGCTTTATGACCAATTCG 60.729 45.833 0.00 0.00 38.95 3.34
5397 7297 4.323417 TGTCTGCTTTATGACCAATTCGT 58.677 39.130 0.00 0.00 32.67 3.85
5398 7298 4.154015 TGTCTGCTTTATGACCAATTCGTG 59.846 41.667 0.00 0.00 32.67 4.35
5399 7299 4.154195 GTCTGCTTTATGACCAATTCGTGT 59.846 41.667 0.00 0.00 0.00 4.49
5400 7300 5.350365 GTCTGCTTTATGACCAATTCGTGTA 59.650 40.000 0.00 0.00 0.00 2.90
5401 7301 5.935206 TCTGCTTTATGACCAATTCGTGTAA 59.065 36.000 0.00 0.00 0.00 2.41
5402 7302 6.092122 TCTGCTTTATGACCAATTCGTGTAAG 59.908 38.462 0.00 0.00 0.00 2.34
5403 7303 5.123186 TGCTTTATGACCAATTCGTGTAAGG 59.877 40.000 0.00 0.00 0.00 2.69
5404 7304 5.353123 GCTTTATGACCAATTCGTGTAAGGA 59.647 40.000 0.00 0.00 0.00 3.36
5405 7305 6.128117 GCTTTATGACCAATTCGTGTAAGGAA 60.128 38.462 0.00 0.00 45.59 3.36
5406 7306 7.574217 GCTTTATGACCAATTCGTGTAAGGAAA 60.574 37.037 0.00 0.00 44.59 3.13
5407 7307 7.931578 TTATGACCAATTCGTGTAAGGAAAT 57.068 32.000 0.00 0.00 44.59 2.17
5408 7308 6.834168 ATGACCAATTCGTGTAAGGAAATT 57.166 33.333 0.00 0.00 44.59 1.82
5409 7309 7.931578 ATGACCAATTCGTGTAAGGAAATTA 57.068 32.000 0.00 0.00 44.59 1.40
5410 7310 7.931578 TGACCAATTCGTGTAAGGAAATTAT 57.068 32.000 0.00 0.00 44.59 1.28
5411 7311 7.757526 TGACCAATTCGTGTAAGGAAATTATG 58.242 34.615 0.00 0.00 44.59 1.90
5412 7312 7.608376 TGACCAATTCGTGTAAGGAAATTATGA 59.392 33.333 0.00 0.00 44.59 2.15
5413 7313 7.758495 ACCAATTCGTGTAAGGAAATTATGAC 58.242 34.615 0.00 0.00 44.59 3.06
5414 7314 7.148137 ACCAATTCGTGTAAGGAAATTATGACC 60.148 37.037 0.00 0.00 44.59 4.02
5415 7315 6.937436 ATTCGTGTAAGGAAATTATGACCC 57.063 37.500 0.00 0.00 44.59 4.46
5416 7316 5.687166 TCGTGTAAGGAAATTATGACCCT 57.313 39.130 0.00 0.00 0.00 4.34
5417 7317 6.057321 TCGTGTAAGGAAATTATGACCCTT 57.943 37.500 0.00 0.00 41.47 3.95
5418 7318 6.478129 TCGTGTAAGGAAATTATGACCCTTT 58.522 36.000 0.00 0.00 39.51 3.11
5419 7319 6.943718 TCGTGTAAGGAAATTATGACCCTTTT 59.056 34.615 0.00 0.00 39.51 2.27
5420 7320 7.027161 CGTGTAAGGAAATTATGACCCTTTTG 58.973 38.462 0.00 0.00 39.51 2.44
5421 7321 7.094549 CGTGTAAGGAAATTATGACCCTTTTGA 60.095 37.037 0.00 0.00 39.51 2.69
5422 7322 8.027189 GTGTAAGGAAATTATGACCCTTTTGAC 58.973 37.037 0.00 0.00 39.51 3.18
5423 7323 6.605471 AAGGAAATTATGACCCTTTTGACC 57.395 37.500 0.00 0.00 35.64 4.02
5424 7324 5.650283 AGGAAATTATGACCCTTTTGACCA 58.350 37.500 0.00 0.00 0.00 4.02
5425 7325 6.081356 AGGAAATTATGACCCTTTTGACCAA 58.919 36.000 0.00 0.00 0.00 3.67
5426 7326 6.556874 AGGAAATTATGACCCTTTTGACCAAA 59.443 34.615 0.00 0.00 0.00 3.28
5427 7327 7.071824 AGGAAATTATGACCCTTTTGACCAAAA 59.928 33.333 7.57 7.57 37.90 2.44
5428 7328 7.882791 GGAAATTATGACCCTTTTGACCAAAAT 59.117 33.333 8.19 0.00 39.29 1.82
5429 7329 8.620116 AAATTATGACCCTTTTGACCAAAATG 57.380 30.769 8.19 6.07 39.29 2.32
5430 7330 4.622260 ATGACCCTTTTGACCAAAATGG 57.378 40.909 20.49 20.49 45.54 3.16
5445 7345 6.119144 CCAAAATGGTCGTTATAGTTCAGG 57.881 41.667 0.00 0.00 31.35 3.86
5446 7346 5.065988 CCAAAATGGTCGTTATAGTTCAGGG 59.934 44.000 0.00 0.00 31.35 4.45
5447 7347 5.431179 AAATGGTCGTTATAGTTCAGGGT 57.569 39.130 0.00 0.00 0.00 4.34
5448 7348 5.431179 AATGGTCGTTATAGTTCAGGGTT 57.569 39.130 0.00 0.00 0.00 4.11
5449 7349 4.895668 TGGTCGTTATAGTTCAGGGTTT 57.104 40.909 0.00 0.00 0.00 3.27
5450 7350 4.571919 TGGTCGTTATAGTTCAGGGTTTG 58.428 43.478 0.00 0.00 0.00 2.93
5451 7351 4.283978 TGGTCGTTATAGTTCAGGGTTTGA 59.716 41.667 0.00 0.00 0.00 2.69
5452 7352 5.221682 TGGTCGTTATAGTTCAGGGTTTGAA 60.222 40.000 0.00 0.00 43.40 2.69
5453 7353 5.350640 GGTCGTTATAGTTCAGGGTTTGAAG 59.649 44.000 0.00 0.00 46.09 3.02
5454 7354 4.933400 TCGTTATAGTTCAGGGTTTGAAGC 59.067 41.667 0.00 0.00 46.09 3.86
5455 7355 4.094442 CGTTATAGTTCAGGGTTTGAAGCC 59.906 45.833 3.81 3.81 46.09 4.35
5456 7356 2.579410 TAGTTCAGGGTTTGAAGCCC 57.421 50.000 9.32 9.32 46.09 5.19
5457 7357 0.178961 AGTTCAGGGTTTGAAGCCCC 60.179 55.000 13.91 3.63 46.09 5.80
5458 7358 1.185618 GTTCAGGGTTTGAAGCCCCC 61.186 60.000 13.91 0.95 46.09 5.40
5472 7372 4.911901 CCCCCGAACAACTTTGGA 57.088 55.556 0.00 0.00 32.93 3.53
5473 7373 2.337361 CCCCCGAACAACTTTGGAC 58.663 57.895 0.00 0.00 32.93 4.02
5474 7374 1.176619 CCCCCGAACAACTTTGGACC 61.177 60.000 0.00 0.00 32.93 4.46
5475 7375 0.466555 CCCCGAACAACTTTGGACCA 60.467 55.000 0.00 0.00 32.93 4.02
5476 7376 1.394618 CCCGAACAACTTTGGACCAA 58.605 50.000 1.69 1.69 32.93 3.67
5477 7377 1.960689 CCCGAACAACTTTGGACCAAT 59.039 47.619 7.99 0.00 32.93 3.16
5478 7378 2.364002 CCCGAACAACTTTGGACCAATT 59.636 45.455 7.99 0.00 32.93 2.32
5479 7379 3.380142 CCGAACAACTTTGGACCAATTG 58.620 45.455 15.91 15.91 32.93 2.32
5480 7380 3.067461 CCGAACAACTTTGGACCAATTGA 59.933 43.478 21.94 2.67 32.93 2.57
5481 7381 4.261994 CCGAACAACTTTGGACCAATTGAT 60.262 41.667 21.94 13.33 32.93 2.57
5482 7382 4.917415 CGAACAACTTTGGACCAATTGATC 59.083 41.667 21.94 18.61 0.00 2.92
5483 7383 5.278463 CGAACAACTTTGGACCAATTGATCT 60.278 40.000 21.94 9.63 0.00 2.75
5484 7384 5.712152 ACAACTTTGGACCAATTGATCTC 57.288 39.130 21.94 0.00 0.00 2.75
5485 7385 4.216257 ACAACTTTGGACCAATTGATCTCG 59.784 41.667 21.94 4.62 0.00 4.04
5486 7386 4.286297 ACTTTGGACCAATTGATCTCGA 57.714 40.909 7.99 0.00 0.00 4.04
5487 7387 4.651778 ACTTTGGACCAATTGATCTCGAA 58.348 39.130 7.99 0.00 0.00 3.71
5488 7388 5.256474 ACTTTGGACCAATTGATCTCGAAT 58.744 37.500 7.99 0.00 0.00 3.34
5489 7389 5.124457 ACTTTGGACCAATTGATCTCGAATG 59.876 40.000 7.99 6.85 0.00 2.67
5490 7390 3.544684 TGGACCAATTGATCTCGAATGG 58.455 45.455 7.12 0.69 0.00 3.16
5491 7391 3.054434 TGGACCAATTGATCTCGAATGGT 60.054 43.478 7.12 6.85 0.00 3.55
5492 7392 3.561725 GGACCAATTGATCTCGAATGGTC 59.438 47.826 20.00 20.00 42.58 4.02
5515 7415 7.852516 GTCGTAGATTTATGACCAATTCTTCC 58.147 38.462 4.60 0.00 40.67 3.46
5516 7416 7.494625 GTCGTAGATTTATGACCAATTCTTCCA 59.505 37.037 4.60 0.00 40.67 3.53
5517 7417 7.710907 TCGTAGATTTATGACCAATTCTTCCAG 59.289 37.037 0.00 0.00 0.00 3.86
5518 7418 7.041780 CGTAGATTTATGACCAATTCTTCCAGG 60.042 40.741 0.00 0.00 0.00 4.45
5519 7419 6.131961 AGATTTATGACCAATTCTTCCAGGG 58.868 40.000 0.00 0.00 0.00 4.45
5520 7420 4.946160 TTATGACCAATTCTTCCAGGGT 57.054 40.909 0.00 0.00 33.78 4.34
5521 7421 2.879103 TGACCAATTCTTCCAGGGTC 57.121 50.000 0.00 0.00 46.40 4.46
5522 7422 2.879103 GACCAATTCTTCCAGGGTCA 57.121 50.000 0.00 0.00 45.70 4.02
5523 7423 2.437413 GACCAATTCTTCCAGGGTCAC 58.563 52.381 0.00 0.00 45.70 3.67
5524 7424 2.040412 GACCAATTCTTCCAGGGTCACT 59.960 50.000 0.00 0.00 45.70 3.41
5525 7425 4.119903 GACCAATTCTTCCAGGGTCACTG 61.120 52.174 0.00 0.00 45.70 3.66
5534 7434 3.560226 AGGGTCACTGACAGAAGGT 57.440 52.632 10.08 0.00 33.68 3.50
5560 7460 9.208022 TCAGAAGTTGACATATTTCTTGTAGTG 57.792 33.333 0.00 0.00 0.00 2.74
5561 7461 9.208022 CAGAAGTTGACATATTTCTTGTAGTGA 57.792 33.333 0.00 0.00 0.00 3.41
5562 7462 9.778741 AGAAGTTGACATATTTCTTGTAGTGAA 57.221 29.630 0.00 0.00 0.00 3.18
5563 7463 9.813080 GAAGTTGACATATTTCTTGTAGTGAAC 57.187 33.333 0.00 0.00 0.00 3.18
5564 7464 8.902540 AGTTGACATATTTCTTGTAGTGAACA 57.097 30.769 0.00 0.00 35.88 3.18
5565 7465 9.337396 AGTTGACATATTTCTTGTAGTGAACAA 57.663 29.630 0.00 0.00 45.90 2.83
5573 7473 3.290948 TTGTAGTGAACAAGTGGCCTT 57.709 42.857 3.32 0.00 43.22 4.35
5574 7474 3.290948 TGTAGTGAACAAGTGGCCTTT 57.709 42.857 3.32 0.00 34.29 3.11
5575 7475 2.948979 TGTAGTGAACAAGTGGCCTTTG 59.051 45.455 16.06 16.06 34.29 2.77
5576 7476 2.435372 AGTGAACAAGTGGCCTTTGA 57.565 45.000 22.18 2.86 0.00 2.69
5577 7477 2.733956 AGTGAACAAGTGGCCTTTGAA 58.266 42.857 22.18 8.60 0.00 2.69
5578 7478 3.299503 AGTGAACAAGTGGCCTTTGAAT 58.700 40.909 22.18 12.86 0.00 2.57
5579 7479 4.469657 AGTGAACAAGTGGCCTTTGAATA 58.530 39.130 22.18 8.58 0.00 1.75
5580 7480 4.278419 AGTGAACAAGTGGCCTTTGAATAC 59.722 41.667 22.18 16.64 0.00 1.89
5581 7481 4.037446 GTGAACAAGTGGCCTTTGAATACA 59.963 41.667 22.18 14.16 0.00 2.29
5582 7482 4.832266 TGAACAAGTGGCCTTTGAATACAT 59.168 37.500 22.18 1.66 0.00 2.29
5583 7483 6.007076 TGAACAAGTGGCCTTTGAATACATA 58.993 36.000 22.18 4.08 0.00 2.29
5584 7484 6.663093 TGAACAAGTGGCCTTTGAATACATAT 59.337 34.615 22.18 0.46 0.00 1.78
5585 7485 7.831690 TGAACAAGTGGCCTTTGAATACATATA 59.168 33.333 22.18 0.00 0.00 0.86
5586 7486 8.766994 AACAAGTGGCCTTTGAATACATATAT 57.233 30.769 22.18 0.00 0.00 0.86
5587 7487 9.860650 AACAAGTGGCCTTTGAATACATATATA 57.139 29.630 22.18 0.00 0.00 0.86
5588 7488 9.507329 ACAAGTGGCCTTTGAATACATATATAG 57.493 33.333 22.18 0.00 0.00 1.31
5589 7489 8.454106 CAAGTGGCCTTTGAATACATATATAGC 58.546 37.037 13.36 0.00 0.00 2.97
5590 7490 7.689299 AGTGGCCTTTGAATACATATATAGCA 58.311 34.615 3.32 0.00 0.00 3.49
5591 7491 8.331740 AGTGGCCTTTGAATACATATATAGCAT 58.668 33.333 3.32 0.00 0.00 3.79
5592 7492 8.960591 GTGGCCTTTGAATACATATATAGCATT 58.039 33.333 3.32 0.00 0.00 3.56
5625 7525 4.431416 TTTTGGACTAGAAGCCTGAACA 57.569 40.909 0.00 0.00 0.00 3.18
5626 7526 4.431416 TTTGGACTAGAAGCCTGAACAA 57.569 40.909 0.00 0.00 0.00 2.83
5627 7527 3.402628 TGGACTAGAAGCCTGAACAAC 57.597 47.619 0.00 0.00 0.00 3.32
5628 7528 2.703536 TGGACTAGAAGCCTGAACAACA 59.296 45.455 0.00 0.00 0.00 3.33
5629 7529 3.327757 TGGACTAGAAGCCTGAACAACAT 59.672 43.478 0.00 0.00 0.00 2.71
5630 7530 4.530553 TGGACTAGAAGCCTGAACAACATA 59.469 41.667 0.00 0.00 0.00 2.29
5631 7531 5.112686 GGACTAGAAGCCTGAACAACATAG 58.887 45.833 0.00 0.00 0.00 2.23
5632 7532 5.091261 ACTAGAAGCCTGAACAACATAGG 57.909 43.478 0.00 0.00 34.67 2.57
5638 7538 2.550978 CCTGAACAACATAGGCTACGG 58.449 52.381 0.00 0.00 0.00 4.02
5639 7539 1.933853 CTGAACAACATAGGCTACGGC 59.066 52.381 0.00 0.00 37.82 5.68
5640 7540 1.276705 TGAACAACATAGGCTACGGCA 59.723 47.619 0.00 0.00 40.87 5.69
5641 7541 2.093181 TGAACAACATAGGCTACGGCAT 60.093 45.455 0.00 0.00 40.87 4.40
5642 7542 2.240493 ACAACATAGGCTACGGCATC 57.760 50.000 0.00 0.00 40.87 3.91
5643 7543 1.484653 ACAACATAGGCTACGGCATCA 59.515 47.619 0.00 0.00 40.87 3.07
5644 7544 2.093181 ACAACATAGGCTACGGCATCAA 60.093 45.455 0.00 0.00 40.87 2.57
5645 7545 2.533266 ACATAGGCTACGGCATCAAG 57.467 50.000 0.00 0.00 40.87 3.02
5646 7546 2.039418 ACATAGGCTACGGCATCAAGA 58.961 47.619 0.00 0.00 40.87 3.02
5647 7547 2.036475 ACATAGGCTACGGCATCAAGAG 59.964 50.000 0.00 0.00 40.87 2.85
5648 7548 1.776662 TAGGCTACGGCATCAAGAGT 58.223 50.000 0.00 0.00 40.87 3.24
5649 7549 0.176680 AGGCTACGGCATCAAGAGTG 59.823 55.000 0.00 0.00 40.87 3.51
5650 7550 0.811616 GGCTACGGCATCAAGAGTGG 60.812 60.000 0.00 0.00 40.87 4.00
5651 7551 0.108138 GCTACGGCATCAAGAGTGGT 60.108 55.000 0.00 0.00 38.54 4.16
5652 7552 1.645034 CTACGGCATCAAGAGTGGTG 58.355 55.000 0.00 0.00 39.05 4.17
5653 7553 0.973632 TACGGCATCAAGAGTGGTGT 59.026 50.000 0.00 0.00 38.23 4.16
5654 7554 0.320771 ACGGCATCAAGAGTGGTGTC 60.321 55.000 0.00 0.00 38.23 3.67
5655 7555 0.320683 CGGCATCAAGAGTGGTGTCA 60.321 55.000 0.00 0.00 40.78 3.58
5656 7556 1.160137 GGCATCAAGAGTGGTGTCAC 58.840 55.000 0.00 0.00 40.43 3.67
5657 7557 1.543208 GGCATCAAGAGTGGTGTCACA 60.543 52.381 5.12 0.00 40.43 3.58
5658 7558 1.802960 GCATCAAGAGTGGTGTCACAG 59.197 52.381 5.12 0.00 45.91 3.66
5659 7559 2.420642 CATCAAGAGTGGTGTCACAGG 58.579 52.381 5.12 0.00 45.91 4.00
5660 7560 0.106708 TCAAGAGTGGTGTCACAGGC 59.893 55.000 5.12 0.00 45.91 4.85
5661 7561 1.069765 AAGAGTGGTGTCACAGGCG 59.930 57.895 5.12 0.00 45.91 5.52
5662 7562 2.996168 AAGAGTGGTGTCACAGGCGC 62.996 60.000 0.00 0.00 45.91 6.53
5663 7563 3.521529 GAGTGGTGTCACAGGCGCT 62.522 63.158 7.64 0.00 45.91 5.92
5664 7564 2.154798 GAGTGGTGTCACAGGCGCTA 62.155 60.000 7.64 0.00 45.91 4.26
5665 7565 1.738099 GTGGTGTCACAGGCGCTAG 60.738 63.158 7.64 2.12 43.13 3.42
5666 7566 2.125512 GGTGTCACAGGCGCTAGG 60.126 66.667 7.64 0.00 0.00 3.02
5667 7567 2.125512 GTGTCACAGGCGCTAGGG 60.126 66.667 7.64 1.65 0.00 3.53
5668 7568 3.390521 TGTCACAGGCGCTAGGGG 61.391 66.667 7.64 0.00 0.00 4.79
5669 7569 3.075005 GTCACAGGCGCTAGGGGA 61.075 66.667 7.64 0.00 0.00 4.81
5670 7570 2.759973 TCACAGGCGCTAGGGGAG 60.760 66.667 7.64 0.00 0.00 4.30
5671 7571 3.077556 CACAGGCGCTAGGGGAGT 61.078 66.667 7.64 0.00 0.00 3.85
5672 7572 3.077556 ACAGGCGCTAGGGGAGTG 61.078 66.667 7.64 0.00 38.83 3.51
5673 7573 2.759973 CAGGCGCTAGGGGAGTGA 60.760 66.667 7.64 0.00 37.96 3.41
5674 7574 2.136878 CAGGCGCTAGGGGAGTGAT 61.137 63.158 7.64 0.00 37.96 3.06
5675 7575 0.827925 CAGGCGCTAGGGGAGTGATA 60.828 60.000 7.64 0.00 37.96 2.15
5676 7576 0.115349 AGGCGCTAGGGGAGTGATAT 59.885 55.000 7.64 0.00 37.96 1.63
5677 7577 0.533032 GGCGCTAGGGGAGTGATATC 59.467 60.000 7.64 0.00 37.96 1.63
5678 7578 0.533032 GCGCTAGGGGAGTGATATCC 59.467 60.000 9.09 0.00 37.96 2.59
5679 7579 1.924731 CGCTAGGGGAGTGATATCCA 58.075 55.000 0.00 0.00 41.52 3.41
5680 7580 2.248248 CGCTAGGGGAGTGATATCCAA 58.752 52.381 0.00 0.00 41.52 3.53
5681 7581 2.834549 CGCTAGGGGAGTGATATCCAAT 59.165 50.000 0.00 0.00 41.52 3.16
5682 7582 3.261897 CGCTAGGGGAGTGATATCCAATT 59.738 47.826 0.00 0.00 41.52 2.32
5683 7583 4.263068 CGCTAGGGGAGTGATATCCAATTT 60.263 45.833 0.00 0.00 41.52 1.82
5684 7584 5.249420 GCTAGGGGAGTGATATCCAATTTC 58.751 45.833 0.00 0.00 41.52 2.17
5685 7585 5.221925 GCTAGGGGAGTGATATCCAATTTCA 60.222 44.000 0.00 0.00 41.52 2.69
5686 7586 5.732331 AGGGGAGTGATATCCAATTTCAA 57.268 39.130 0.00 0.00 41.52 2.69
5687 7587 5.449553 AGGGGAGTGATATCCAATTTCAAC 58.550 41.667 0.00 0.00 41.52 3.18
5688 7588 5.194537 AGGGGAGTGATATCCAATTTCAACT 59.805 40.000 0.00 0.00 41.52 3.16
5689 7589 5.893824 GGGGAGTGATATCCAATTTCAACTT 59.106 40.000 0.00 0.00 41.52 2.66
5690 7590 6.039829 GGGGAGTGATATCCAATTTCAACTTC 59.960 42.308 0.00 0.00 41.52 3.01
5691 7591 6.830838 GGGAGTGATATCCAATTTCAACTTCT 59.169 38.462 0.00 0.00 41.52 2.85
5692 7592 7.012799 GGGAGTGATATCCAATTTCAACTTCTC 59.987 40.741 0.00 0.00 41.52 2.87
5693 7593 7.012799 GGAGTGATATCCAATTTCAACTTCTCC 59.987 40.741 0.00 0.00 39.34 3.71
5694 7594 6.540189 AGTGATATCCAATTTCAACTTCTCCG 59.460 38.462 0.00 0.00 0.00 4.63
5695 7595 6.538742 GTGATATCCAATTTCAACTTCTCCGA 59.461 38.462 0.00 0.00 0.00 4.55
5696 7596 6.538742 TGATATCCAATTTCAACTTCTCCGAC 59.461 38.462 0.00 0.00 0.00 4.79
5697 7597 3.408634 TCCAATTTCAACTTCTCCGACC 58.591 45.455 0.00 0.00 0.00 4.79
5698 7598 2.159627 CCAATTTCAACTTCTCCGACCG 59.840 50.000 0.00 0.00 0.00 4.79
5699 7599 1.439679 ATTTCAACTTCTCCGACCGC 58.560 50.000 0.00 0.00 0.00 5.68
5700 7600 0.105224 TTTCAACTTCTCCGACCGCA 59.895 50.000 0.00 0.00 0.00 5.69
5701 7601 0.319555 TTCAACTTCTCCGACCGCAG 60.320 55.000 0.00 0.00 0.00 5.18
5714 7614 3.113745 CGCAGGGCATCCATTGTC 58.886 61.111 0.00 0.00 34.83 3.18
5715 7615 1.452651 CGCAGGGCATCCATTGTCT 60.453 57.895 0.00 0.00 34.83 3.41
5716 7616 1.721664 CGCAGGGCATCCATTGTCTG 61.722 60.000 0.00 0.00 34.24 3.51
5728 7628 2.216046 CATTGTCTGGATGATGGACGG 58.784 52.381 0.00 0.00 33.21 4.79
5729 7629 1.275666 TTGTCTGGATGATGGACGGT 58.724 50.000 0.00 0.00 33.21 4.83
5730 7630 0.824109 TGTCTGGATGATGGACGGTC 59.176 55.000 0.00 0.00 33.21 4.79
5731 7631 0.249073 GTCTGGATGATGGACGGTCG 60.249 60.000 1.43 0.00 0.00 4.79
5732 7632 1.068083 CTGGATGATGGACGGTCGG 59.932 63.158 1.43 0.00 0.00 4.79
5733 7633 2.280186 GGATGATGGACGGTCGGC 60.280 66.667 1.43 0.00 0.00 5.54
5734 7634 2.499205 GATGATGGACGGTCGGCA 59.501 61.111 1.43 0.60 0.00 5.69
5735 7635 1.592669 GATGATGGACGGTCGGCAG 60.593 63.158 1.43 0.00 0.00 4.85
5736 7636 3.740128 ATGATGGACGGTCGGCAGC 62.740 63.158 1.43 0.00 0.00 5.25
5737 7637 4.148825 GATGGACGGTCGGCAGCT 62.149 66.667 1.43 0.00 0.00 4.24
5738 7638 4.148825 ATGGACGGTCGGCAGCTC 62.149 66.667 1.43 0.00 0.00 4.09
5749 7649 4.767255 GCAGCTCGGGTCCTGGTG 62.767 72.222 0.00 1.79 0.00 4.17
5750 7650 4.767255 CAGCTCGGGTCCTGGTGC 62.767 72.222 0.00 3.28 0.00 5.01
5753 7653 4.742201 CTCGGGTCCTGGTGCACG 62.742 72.222 11.45 8.82 0.00 5.34
5764 7664 4.030452 GTGCACGCACAAGAGCCC 62.030 66.667 17.03 0.00 45.53 5.19
5767 7667 3.414700 CACGCACAAGAGCCCGAC 61.415 66.667 0.00 0.00 0.00 4.79
5768 7668 3.616721 ACGCACAAGAGCCCGACT 61.617 61.111 0.00 0.00 0.00 4.18
5769 7669 2.273179 ACGCACAAGAGCCCGACTA 61.273 57.895 0.00 0.00 0.00 2.59
5770 7670 1.517257 CGCACAAGAGCCCGACTAG 60.517 63.158 0.00 0.00 0.00 2.57
5771 7671 1.592223 GCACAAGAGCCCGACTAGT 59.408 57.895 0.00 0.00 0.00 2.57
5772 7672 0.815734 GCACAAGAGCCCGACTAGTA 59.184 55.000 0.00 0.00 0.00 1.82
5773 7673 1.202313 GCACAAGAGCCCGACTAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
5774 7674 1.104630 ACAAGAGCCCGACTAGTAGC 58.895 55.000 0.00 0.00 0.00 3.58
5775 7675 1.103803 CAAGAGCCCGACTAGTAGCA 58.896 55.000 12.92 0.00 0.00 3.49
5776 7676 1.104630 AAGAGCCCGACTAGTAGCAC 58.895 55.000 12.92 7.74 0.00 4.40
5777 7677 0.034380 AGAGCCCGACTAGTAGCACA 60.034 55.000 12.92 0.00 0.00 4.57
5778 7678 0.100861 GAGCCCGACTAGTAGCACAC 59.899 60.000 12.92 2.89 0.00 3.82
5779 7679 1.226603 GCCCGACTAGTAGCACACG 60.227 63.158 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
733 735 2.502295 GGATCAAGCTCCACATCATCC 58.498 52.381 0.00 0.00 35.24 3.51
1974 2044 2.039746 TCCGATGGGTCACACTTGAAAT 59.960 45.455 0.00 0.00 31.90 2.17
2084 2155 6.498303 AGGCAATTGTCCCTTCTTCTTTAATT 59.502 34.615 6.39 0.00 0.00 1.40
2144 2215 1.068121 AGCTTCCTTAGTTGGCCAGT 58.932 50.000 5.11 0.00 0.00 4.00
2276 2347 1.208535 CCGTGTCCCCATTAGCAAGTA 59.791 52.381 0.00 0.00 0.00 2.24
2872 2945 7.263496 GCTTGATCTCCTGCTTCAAATATTTT 58.737 34.615 0.00 0.00 0.00 1.82
3576 3651 7.012704 AGCAAACAAGGCATATGTACAGATAAG 59.987 37.037 1.99 0.00 0.00 1.73
3607 3682 3.845781 AACAGGGCATATGTACAGAGG 57.154 47.619 0.33 0.00 0.00 3.69
3623 3698 6.075205 GCGAATTTAGATATGCAAGCAAACAG 60.075 38.462 0.00 0.00 0.00 3.16
3816 3891 7.391620 AGAGTGTCCGTAAGAAAAATATTCCA 58.608 34.615 0.00 0.00 43.02 3.53
3836 3911 7.856145 ACAATGCTTAGATAAAGGAAGAGTG 57.144 36.000 0.00 0.00 39.20 3.51
4278 4359 9.102757 AGTTGTCAGTATAATGTAGCTGAAATG 57.897 33.333 0.00 0.00 39.33 2.32
4902 5022 1.874739 CGAACACCGCCAGAAAACCTA 60.875 52.381 0.00 0.00 0.00 3.08
5217 5337 4.562757 GCTCCATCGGCCATTACAGTAATA 60.563 45.833 2.24 0.00 0.00 0.98
5358 7258 3.946201 AGCACTGTTCCGCTGCCT 61.946 61.111 0.00 0.00 37.02 4.75
5362 7262 1.301244 CAGACAGCACTGTTCCGCT 60.301 57.895 4.52 0.00 45.05 5.52
5363 7263 2.959357 GCAGACAGCACTGTTCCGC 61.959 63.158 4.52 4.72 45.05 5.54
5364 7264 3.248029 GCAGACAGCACTGTTCCG 58.752 61.111 4.52 0.00 45.05 4.30
5373 7273 4.666237 GAATTGGTCATAAAGCAGACAGC 58.334 43.478 0.00 0.00 46.19 4.40
5374 7274 4.393062 ACGAATTGGTCATAAAGCAGACAG 59.607 41.667 0.00 0.00 36.57 3.51
5375 7275 4.154015 CACGAATTGGTCATAAAGCAGACA 59.846 41.667 0.00 0.00 36.57 3.41
5376 7276 4.154195 ACACGAATTGGTCATAAAGCAGAC 59.846 41.667 0.00 0.00 36.57 3.51
5377 7277 4.323417 ACACGAATTGGTCATAAAGCAGA 58.677 39.130 0.00 0.00 36.57 4.26
5378 7278 4.685169 ACACGAATTGGTCATAAAGCAG 57.315 40.909 0.00 0.00 36.57 4.24
5379 7279 5.123186 CCTTACACGAATTGGTCATAAAGCA 59.877 40.000 0.00 0.00 0.00 3.91
5380 7280 5.353123 TCCTTACACGAATTGGTCATAAAGC 59.647 40.000 0.00 0.00 0.00 3.51
5381 7281 6.978343 TCCTTACACGAATTGGTCATAAAG 57.022 37.500 0.00 0.00 0.00 1.85
5382 7282 7.747155 TTTCCTTACACGAATTGGTCATAAA 57.253 32.000 0.00 0.00 0.00 1.40
5383 7283 7.931578 ATTTCCTTACACGAATTGGTCATAA 57.068 32.000 0.00 0.00 0.00 1.90
5384 7284 7.931578 AATTTCCTTACACGAATTGGTCATA 57.068 32.000 0.00 0.00 0.00 2.15
5385 7285 6.834168 AATTTCCTTACACGAATTGGTCAT 57.166 33.333 0.00 0.00 0.00 3.06
5386 7286 7.608376 TCATAATTTCCTTACACGAATTGGTCA 59.392 33.333 0.00 0.00 0.00 4.02
5387 7287 7.908601 GTCATAATTTCCTTACACGAATTGGTC 59.091 37.037 0.00 0.00 0.00 4.02
5388 7288 7.148137 GGTCATAATTTCCTTACACGAATTGGT 60.148 37.037 0.00 0.00 0.00 3.67
5389 7289 7.193595 GGTCATAATTTCCTTACACGAATTGG 58.806 38.462 0.00 0.00 0.00 3.16
5390 7290 7.067008 AGGGTCATAATTTCCTTACACGAATTG 59.933 37.037 0.00 0.00 0.00 2.32
5391 7291 7.116736 AGGGTCATAATTTCCTTACACGAATT 58.883 34.615 0.00 0.00 0.00 2.17
5392 7292 6.659824 AGGGTCATAATTTCCTTACACGAAT 58.340 36.000 0.00 0.00 0.00 3.34
5393 7293 6.057321 AGGGTCATAATTTCCTTACACGAA 57.943 37.500 0.00 0.00 0.00 3.85
5394 7294 5.687166 AGGGTCATAATTTCCTTACACGA 57.313 39.130 0.00 0.00 0.00 4.35
5395 7295 6.753107 AAAGGGTCATAATTTCCTTACACG 57.247 37.500 0.00 0.00 38.53 4.49
5396 7296 8.027189 GTCAAAAGGGTCATAATTTCCTTACAC 58.973 37.037 0.00 0.00 38.53 2.90
5397 7297 7.177744 GGTCAAAAGGGTCATAATTTCCTTACA 59.822 37.037 0.00 0.00 38.53 2.41
5398 7298 7.177744 TGGTCAAAAGGGTCATAATTTCCTTAC 59.822 37.037 0.00 0.00 38.53 2.34
5399 7299 7.242359 TGGTCAAAAGGGTCATAATTTCCTTA 58.758 34.615 0.00 0.00 38.53 2.69
5400 7300 6.081356 TGGTCAAAAGGGTCATAATTTCCTT 58.919 36.000 0.00 0.00 40.94 3.36
5401 7301 5.650283 TGGTCAAAAGGGTCATAATTTCCT 58.350 37.500 0.00 0.00 0.00 3.36
5402 7302 5.993748 TGGTCAAAAGGGTCATAATTTCC 57.006 39.130 0.00 0.00 0.00 3.13
5403 7303 8.720562 CATTTTGGTCAAAAGGGTCATAATTTC 58.279 33.333 13.28 0.00 42.72 2.17
5404 7304 8.620116 CATTTTGGTCAAAAGGGTCATAATTT 57.380 30.769 13.28 0.00 42.72 1.82
5422 7322 5.065988 CCCTGAACTATAACGACCATTTTGG 59.934 44.000 0.00 0.00 45.02 3.28
5423 7323 5.646360 ACCCTGAACTATAACGACCATTTTG 59.354 40.000 0.00 0.00 0.00 2.44
5424 7324 5.812286 ACCCTGAACTATAACGACCATTTT 58.188 37.500 0.00 0.00 0.00 1.82
5425 7325 5.431179 ACCCTGAACTATAACGACCATTT 57.569 39.130 0.00 0.00 0.00 2.32
5426 7326 5.431179 AACCCTGAACTATAACGACCATT 57.569 39.130 0.00 0.00 0.00 3.16
5427 7327 5.046159 TCAAACCCTGAACTATAACGACCAT 60.046 40.000 0.00 0.00 0.00 3.55
5428 7328 4.283978 TCAAACCCTGAACTATAACGACCA 59.716 41.667 0.00 0.00 0.00 4.02
5429 7329 4.824289 TCAAACCCTGAACTATAACGACC 58.176 43.478 0.00 0.00 0.00 4.79
5430 7330 5.163884 GCTTCAAACCCTGAACTATAACGAC 60.164 44.000 0.00 0.00 39.20 4.34
5431 7331 4.933400 GCTTCAAACCCTGAACTATAACGA 59.067 41.667 0.00 0.00 39.20 3.85
5432 7332 4.094442 GGCTTCAAACCCTGAACTATAACG 59.906 45.833 0.00 0.00 39.20 3.18
5433 7333 4.398358 GGGCTTCAAACCCTGAACTATAAC 59.602 45.833 0.00 0.00 44.68 1.89
5434 7334 4.595986 GGGCTTCAAACCCTGAACTATAA 58.404 43.478 0.00 0.00 44.68 0.98
5435 7335 4.230745 GGGCTTCAAACCCTGAACTATA 57.769 45.455 0.00 0.00 44.68 1.31
5436 7336 3.087370 GGGCTTCAAACCCTGAACTAT 57.913 47.619 0.00 0.00 44.68 2.12
5437 7337 2.579410 GGGCTTCAAACCCTGAACTA 57.421 50.000 0.00 0.00 44.68 2.24
5438 7338 3.439440 GGGCTTCAAACCCTGAACT 57.561 52.632 0.00 0.00 44.68 3.01
5455 7355 1.176619 GGTCCAAAGTTGTTCGGGGG 61.177 60.000 0.00 0.00 0.00 5.40
5456 7356 0.466555 TGGTCCAAAGTTGTTCGGGG 60.467 55.000 0.00 0.00 0.00 5.73
5457 7357 1.394618 TTGGTCCAAAGTTGTTCGGG 58.605 50.000 0.40 0.00 0.00 5.14
5458 7358 3.067461 TCAATTGGTCCAAAGTTGTTCGG 59.933 43.478 8.75 0.00 0.00 4.30
5459 7359 4.300189 TCAATTGGTCCAAAGTTGTTCG 57.700 40.909 8.75 0.00 0.00 3.95
5460 7360 6.089249 AGATCAATTGGTCCAAAGTTGTTC 57.911 37.500 15.20 13.16 0.00 3.18
5461 7361 5.278463 CGAGATCAATTGGTCCAAAGTTGTT 60.278 40.000 15.20 4.92 0.00 2.83
5462 7362 4.216257 CGAGATCAATTGGTCCAAAGTTGT 59.784 41.667 15.20 1.28 0.00 3.32
5463 7363 4.455533 TCGAGATCAATTGGTCCAAAGTTG 59.544 41.667 15.20 9.84 0.00 3.16
5464 7364 4.651778 TCGAGATCAATTGGTCCAAAGTT 58.348 39.130 15.20 0.00 0.00 2.66
5465 7365 4.286297 TCGAGATCAATTGGTCCAAAGT 57.714 40.909 15.20 0.00 0.00 2.66
5466 7366 5.449588 CCATTCGAGATCAATTGGTCCAAAG 60.450 44.000 15.20 4.74 0.00 2.77
5467 7367 4.398988 CCATTCGAGATCAATTGGTCCAAA 59.601 41.667 15.20 7.65 0.00 3.28
5468 7368 3.947196 CCATTCGAGATCAATTGGTCCAA 59.053 43.478 15.20 6.80 0.00 3.53
5469 7369 3.054434 ACCATTCGAGATCAATTGGTCCA 60.054 43.478 15.20 0.00 0.00 4.02
5470 7370 3.545703 ACCATTCGAGATCAATTGGTCC 58.454 45.455 15.20 6.15 0.00 4.46
5471 7371 4.802876 GACCATTCGAGATCAATTGGTC 57.197 45.455 10.92 10.92 37.92 4.02
5489 7389 7.041984 GGAAGAATTGGTCATAAATCTACGACC 60.042 40.741 0.00 0.00 46.69 4.79
5490 7390 7.494625 TGGAAGAATTGGTCATAAATCTACGAC 59.505 37.037 0.00 0.00 0.00 4.34
5491 7391 7.561251 TGGAAGAATTGGTCATAAATCTACGA 58.439 34.615 0.00 0.00 0.00 3.43
5492 7392 7.041780 CCTGGAAGAATTGGTCATAAATCTACG 60.042 40.741 0.00 0.00 34.07 3.51
5493 7393 7.229506 CCCTGGAAGAATTGGTCATAAATCTAC 59.770 40.741 0.00 0.00 34.07 2.59
5494 7394 7.091993 ACCCTGGAAGAATTGGTCATAAATCTA 60.092 37.037 0.00 0.00 34.07 1.98
5495 7395 6.131961 CCCTGGAAGAATTGGTCATAAATCT 58.868 40.000 0.00 0.00 34.07 2.40
5496 7396 5.893824 ACCCTGGAAGAATTGGTCATAAATC 59.106 40.000 0.00 0.00 34.07 2.17
5497 7397 5.842339 ACCCTGGAAGAATTGGTCATAAAT 58.158 37.500 0.00 0.00 34.07 1.40
5498 7398 5.222233 TGACCCTGGAAGAATTGGTCATAAA 60.222 40.000 5.61 0.00 43.56 1.40
5499 7399 4.290985 TGACCCTGGAAGAATTGGTCATAA 59.709 41.667 5.61 0.00 43.56 1.90
5500 7400 3.849574 TGACCCTGGAAGAATTGGTCATA 59.150 43.478 5.61 0.00 43.56 2.15
5501 7401 2.649312 TGACCCTGGAAGAATTGGTCAT 59.351 45.455 5.61 0.00 43.56 3.06
5502 7402 2.061848 TGACCCTGGAAGAATTGGTCA 58.938 47.619 5.61 5.61 45.33 4.02
5503 7403 2.040412 AGTGACCCTGGAAGAATTGGTC 59.960 50.000 0.00 0.00 40.60 4.02
5504 7404 2.065799 AGTGACCCTGGAAGAATTGGT 58.934 47.619 0.00 0.00 34.07 3.67
5505 7405 2.040278 TCAGTGACCCTGGAAGAATTGG 59.960 50.000 0.00 0.00 41.83 3.16
5506 7406 3.077359 GTCAGTGACCCTGGAAGAATTG 58.923 50.000 12.54 0.00 41.83 2.32
5507 7407 2.711009 TGTCAGTGACCCTGGAAGAATT 59.289 45.455 20.43 0.00 41.83 2.17
5508 7408 2.304180 CTGTCAGTGACCCTGGAAGAAT 59.696 50.000 20.43 0.00 41.83 2.40
5509 7409 1.694150 CTGTCAGTGACCCTGGAAGAA 59.306 52.381 20.43 0.00 41.83 2.52
5510 7410 1.133167 TCTGTCAGTGACCCTGGAAGA 60.133 52.381 20.43 12.08 41.83 2.87
5511 7411 1.342074 TCTGTCAGTGACCCTGGAAG 58.658 55.000 20.43 9.93 41.83 3.46
5512 7412 1.694150 CTTCTGTCAGTGACCCTGGAA 59.306 52.381 20.43 16.12 41.83 3.53
5513 7413 1.342074 CTTCTGTCAGTGACCCTGGA 58.658 55.000 20.43 10.33 41.83 3.86
5514 7414 0.322975 CCTTCTGTCAGTGACCCTGG 59.677 60.000 20.43 12.82 41.83 4.45
5515 7415 1.001406 GACCTTCTGTCAGTGACCCTG 59.999 57.143 20.43 10.65 43.85 4.45
5516 7416 1.343069 GACCTTCTGTCAGTGACCCT 58.657 55.000 20.43 0.00 43.85 4.34
5517 7417 3.917072 GACCTTCTGTCAGTGACCC 57.083 57.895 20.43 0.00 43.85 4.46
5534 7434 9.208022 CACTACAAGAAATATGTCAACTTCTGA 57.792 33.333 0.00 0.00 32.27 3.27
5535 7435 9.208022 TCACTACAAGAAATATGTCAACTTCTG 57.792 33.333 0.00 0.00 32.27 3.02
5536 7436 9.778741 TTCACTACAAGAAATATGTCAACTTCT 57.221 29.630 0.00 0.00 32.27 2.85
5537 7437 9.813080 GTTCACTACAAGAAATATGTCAACTTC 57.187 33.333 0.00 0.00 32.27 3.01
5538 7438 9.337396 TGTTCACTACAAGAAATATGTCAACTT 57.663 29.630 0.00 0.00 32.64 2.66
5539 7439 8.902540 TGTTCACTACAAGAAATATGTCAACT 57.097 30.769 0.00 0.00 32.64 3.16
5553 7453 3.290948 AAGGCCACTTGTTCACTACAA 57.709 42.857 5.01 0.00 44.31 2.41
5554 7454 2.948979 CAAAGGCCACTTGTTCACTACA 59.051 45.455 5.01 0.00 36.93 2.74
5555 7455 3.211045 TCAAAGGCCACTTGTTCACTAC 58.789 45.455 5.01 0.00 36.93 2.73
5556 7456 3.569194 TCAAAGGCCACTTGTTCACTA 57.431 42.857 5.01 0.00 36.93 2.74
5557 7457 2.435372 TCAAAGGCCACTTGTTCACT 57.565 45.000 5.01 0.00 36.93 3.41
5558 7458 3.733443 ATTCAAAGGCCACTTGTTCAC 57.267 42.857 5.01 0.00 36.93 3.18
5559 7459 4.211125 TGTATTCAAAGGCCACTTGTTCA 58.789 39.130 5.01 4.51 36.93 3.18
5560 7460 4.846779 TGTATTCAAAGGCCACTTGTTC 57.153 40.909 5.01 2.16 36.93 3.18
5561 7461 8.766994 ATATATGTATTCAAAGGCCACTTGTT 57.233 30.769 5.01 3.59 36.93 2.83
5562 7462 9.507329 CTATATATGTATTCAAAGGCCACTTGT 57.493 33.333 5.01 0.00 36.93 3.16
5563 7463 8.454106 GCTATATATGTATTCAAAGGCCACTTG 58.546 37.037 5.01 8.53 36.93 3.16
5564 7464 8.163408 TGCTATATATGTATTCAAAGGCCACTT 58.837 33.333 5.01 0.00 38.99 3.16
5565 7465 7.689299 TGCTATATATGTATTCAAAGGCCACT 58.311 34.615 5.01 0.00 0.00 4.00
5566 7466 7.921786 TGCTATATATGTATTCAAAGGCCAC 57.078 36.000 5.01 0.00 0.00 5.01
5603 7503 4.787551 TGTTCAGGCTTCTAGTCCAAAAA 58.212 39.130 0.00 0.00 0.00 1.94
5604 7504 4.431416 TGTTCAGGCTTCTAGTCCAAAA 57.569 40.909 0.00 0.00 0.00 2.44
5605 7505 4.134563 GTTGTTCAGGCTTCTAGTCCAAA 58.865 43.478 0.00 0.00 0.00 3.28
5606 7506 3.135712 TGTTGTTCAGGCTTCTAGTCCAA 59.864 43.478 0.00 0.00 0.00 3.53
5607 7507 2.703536 TGTTGTTCAGGCTTCTAGTCCA 59.296 45.455 0.00 0.00 0.00 4.02
5608 7508 3.402628 TGTTGTTCAGGCTTCTAGTCC 57.597 47.619 0.00 0.00 0.00 3.85
5609 7509 5.112686 CCTATGTTGTTCAGGCTTCTAGTC 58.887 45.833 0.00 0.00 0.00 2.59
5610 7510 5.091261 CCTATGTTGTTCAGGCTTCTAGT 57.909 43.478 0.00 0.00 0.00 2.57
5618 7518 2.550978 CCGTAGCCTATGTTGTTCAGG 58.449 52.381 0.00 0.00 0.00 3.86
5619 7519 1.933853 GCCGTAGCCTATGTTGTTCAG 59.066 52.381 0.00 0.00 0.00 3.02
5620 7520 1.276705 TGCCGTAGCCTATGTTGTTCA 59.723 47.619 0.00 0.00 38.69 3.18
5621 7521 2.018542 TGCCGTAGCCTATGTTGTTC 57.981 50.000 0.00 0.00 38.69 3.18
5622 7522 2.093181 TGATGCCGTAGCCTATGTTGTT 60.093 45.455 0.00 0.00 38.69 2.83
5623 7523 1.484653 TGATGCCGTAGCCTATGTTGT 59.515 47.619 0.00 0.00 38.69 3.32
5624 7524 2.238942 TGATGCCGTAGCCTATGTTG 57.761 50.000 0.00 0.00 38.69 3.33
5625 7525 2.434336 TCTTGATGCCGTAGCCTATGTT 59.566 45.455 0.00 0.00 38.69 2.71
5626 7526 2.036475 CTCTTGATGCCGTAGCCTATGT 59.964 50.000 0.00 0.00 38.69 2.29
5627 7527 2.036475 ACTCTTGATGCCGTAGCCTATG 59.964 50.000 0.00 0.00 38.69 2.23
5628 7528 2.036475 CACTCTTGATGCCGTAGCCTAT 59.964 50.000 0.00 0.00 38.69 2.57
5629 7529 1.409064 CACTCTTGATGCCGTAGCCTA 59.591 52.381 0.00 0.00 38.69 3.93
5630 7530 0.176680 CACTCTTGATGCCGTAGCCT 59.823 55.000 0.00 0.00 38.69 4.58
5631 7531 0.811616 CCACTCTTGATGCCGTAGCC 60.812 60.000 0.00 0.00 38.69 3.93
5632 7532 0.108138 ACCACTCTTGATGCCGTAGC 60.108 55.000 0.00 0.00 40.48 3.58
5633 7533 1.066858 ACACCACTCTTGATGCCGTAG 60.067 52.381 0.00 0.00 0.00 3.51
5634 7534 0.973632 ACACCACTCTTGATGCCGTA 59.026 50.000 0.00 0.00 0.00 4.02
5635 7535 0.320771 GACACCACTCTTGATGCCGT 60.321 55.000 0.00 0.00 0.00 5.68
5636 7536 0.320683 TGACACCACTCTTGATGCCG 60.321 55.000 0.00 0.00 0.00 5.69
5637 7537 1.160137 GTGACACCACTCTTGATGCC 58.840 55.000 0.00 0.00 40.10 4.40
5638 7538 1.802960 CTGTGACACCACTCTTGATGC 59.197 52.381 2.45 0.00 43.55 3.91
5639 7539 2.420642 CCTGTGACACCACTCTTGATG 58.579 52.381 2.45 0.00 43.55 3.07
5640 7540 1.271054 GCCTGTGACACCACTCTTGAT 60.271 52.381 2.45 0.00 43.55 2.57
5641 7541 0.106708 GCCTGTGACACCACTCTTGA 59.893 55.000 2.45 0.00 43.55 3.02
5642 7542 1.224069 CGCCTGTGACACCACTCTTG 61.224 60.000 2.45 0.00 43.55 3.02
5643 7543 1.069765 CGCCTGTGACACCACTCTT 59.930 57.895 2.45 0.00 43.55 2.85
5644 7544 2.737180 CGCCTGTGACACCACTCT 59.263 61.111 2.45 0.00 43.55 3.24
5645 7545 2.154798 TAGCGCCTGTGACACCACTC 62.155 60.000 2.29 0.00 43.55 3.51
5646 7546 2.159819 CTAGCGCCTGTGACACCACT 62.160 60.000 2.29 0.00 43.55 4.00
5647 7547 1.738099 CTAGCGCCTGTGACACCAC 60.738 63.158 2.29 0.00 43.46 4.16
5648 7548 2.656646 CTAGCGCCTGTGACACCA 59.343 61.111 2.29 0.00 0.00 4.17
5649 7549 2.125512 CCTAGCGCCTGTGACACC 60.126 66.667 2.29 0.00 0.00 4.16
5650 7550 2.125512 CCCTAGCGCCTGTGACAC 60.126 66.667 2.29 0.00 0.00 3.67
5651 7551 3.390521 CCCCTAGCGCCTGTGACA 61.391 66.667 2.29 0.00 0.00 3.58
5652 7552 3.075005 TCCCCTAGCGCCTGTGAC 61.075 66.667 2.29 0.00 0.00 3.67
5653 7553 2.759973 CTCCCCTAGCGCCTGTGA 60.760 66.667 2.29 0.00 0.00 3.58
5654 7554 3.077556 ACTCCCCTAGCGCCTGTG 61.078 66.667 2.29 0.00 0.00 3.66
5655 7555 2.880629 ATCACTCCCCTAGCGCCTGT 62.881 60.000 2.29 0.00 0.00 4.00
5656 7556 0.827925 TATCACTCCCCTAGCGCCTG 60.828 60.000 2.29 0.00 0.00 4.85
5657 7557 0.115349 ATATCACTCCCCTAGCGCCT 59.885 55.000 2.29 0.00 0.00 5.52
5658 7558 0.533032 GATATCACTCCCCTAGCGCC 59.467 60.000 2.29 0.00 0.00 6.53
5659 7559 0.533032 GGATATCACTCCCCTAGCGC 59.467 60.000 0.00 0.00 0.00 5.92
5660 7560 1.924731 TGGATATCACTCCCCTAGCG 58.075 55.000 4.83 0.00 34.12 4.26
5661 7561 4.917906 AATTGGATATCACTCCCCTAGC 57.082 45.455 4.83 0.00 34.12 3.42
5662 7562 6.439636 TGAAATTGGATATCACTCCCCTAG 57.560 41.667 4.83 0.00 34.12 3.02
5663 7563 6.389869 AGTTGAAATTGGATATCACTCCCCTA 59.610 38.462 4.83 0.00 34.12 3.53
5664 7564 5.194537 AGTTGAAATTGGATATCACTCCCCT 59.805 40.000 4.83 0.00 34.12 4.79
5665 7565 5.449553 AGTTGAAATTGGATATCACTCCCC 58.550 41.667 4.83 0.00 34.12 4.81
5666 7566 6.830838 AGAAGTTGAAATTGGATATCACTCCC 59.169 38.462 4.83 0.00 34.12 4.30
5667 7567 7.012799 GGAGAAGTTGAAATTGGATATCACTCC 59.987 40.741 4.83 0.00 35.74 3.85
5668 7568 7.254590 CGGAGAAGTTGAAATTGGATATCACTC 60.255 40.741 4.83 0.00 0.00 3.51
5669 7569 6.540189 CGGAGAAGTTGAAATTGGATATCACT 59.460 38.462 4.83 0.00 0.00 3.41
5670 7570 6.538742 TCGGAGAAGTTGAAATTGGATATCAC 59.461 38.462 4.83 0.00 0.00 3.06
5671 7571 6.538742 GTCGGAGAAGTTGAAATTGGATATCA 59.461 38.462 4.83 0.00 39.69 2.15
5672 7572 6.017852 GGTCGGAGAAGTTGAAATTGGATATC 60.018 42.308 0.00 0.00 39.69 1.63
5673 7573 5.823045 GGTCGGAGAAGTTGAAATTGGATAT 59.177 40.000 0.00 0.00 39.69 1.63
5674 7574 5.183228 GGTCGGAGAAGTTGAAATTGGATA 58.817 41.667 0.00 0.00 39.69 2.59
5675 7575 4.010349 GGTCGGAGAAGTTGAAATTGGAT 58.990 43.478 0.00 0.00 39.69 3.41
5676 7576 3.408634 GGTCGGAGAAGTTGAAATTGGA 58.591 45.455 0.00 0.00 39.69 3.53
5677 7577 2.159627 CGGTCGGAGAAGTTGAAATTGG 59.840 50.000 0.00 0.00 39.69 3.16
5678 7578 2.412847 GCGGTCGGAGAAGTTGAAATTG 60.413 50.000 0.00 0.00 39.69 2.32
5679 7579 1.804748 GCGGTCGGAGAAGTTGAAATT 59.195 47.619 0.00 0.00 39.69 1.82
5680 7580 1.270625 TGCGGTCGGAGAAGTTGAAAT 60.271 47.619 0.00 0.00 39.69 2.17
5681 7581 0.105224 TGCGGTCGGAGAAGTTGAAA 59.895 50.000 0.00 0.00 39.69 2.69
5682 7582 0.319555 CTGCGGTCGGAGAAGTTGAA 60.320 55.000 6.00 0.00 39.69 2.69
5683 7583 1.289066 CTGCGGTCGGAGAAGTTGA 59.711 57.895 6.00 0.00 39.69 3.18
5684 7584 1.738099 CCTGCGGTCGGAGAAGTTG 60.738 63.158 13.24 0.00 39.69 3.16
5685 7585 2.657237 CCTGCGGTCGGAGAAGTT 59.343 61.111 13.24 0.00 39.69 2.66
5686 7586 3.382832 CCCTGCGGTCGGAGAAGT 61.383 66.667 13.24 0.00 39.69 3.01
5687 7587 4.821589 GCCCTGCGGTCGGAGAAG 62.822 72.222 13.24 5.64 39.69 2.85
5690 7590 4.899239 GATGCCCTGCGGTCGGAG 62.899 72.222 4.91 4.91 0.00 4.63
5693 7593 4.552365 ATGGATGCCCTGCGGTCG 62.552 66.667 0.00 0.00 0.00 4.79
5694 7594 2.124151 AATGGATGCCCTGCGGTC 60.124 61.111 0.00 0.00 0.00 4.79
5695 7595 2.440796 CAATGGATGCCCTGCGGT 60.441 61.111 0.00 0.00 0.00 5.68
5696 7596 2.440796 ACAATGGATGCCCTGCGG 60.441 61.111 0.00 0.00 0.00 5.69
5697 7597 1.452651 AGACAATGGATGCCCTGCG 60.453 57.895 0.00 0.00 0.00 5.18
5698 7598 2.112898 CAGACAATGGATGCCCTGC 58.887 57.895 0.00 0.00 0.00 4.85
5708 7608 2.216046 CCGTCCATCATCCAGACAATG 58.784 52.381 0.00 0.00 0.00 2.82
5709 7609 1.839994 ACCGTCCATCATCCAGACAAT 59.160 47.619 0.00 0.00 0.00 2.71
5710 7610 1.207089 GACCGTCCATCATCCAGACAA 59.793 52.381 0.00 0.00 0.00 3.18
5711 7611 0.824109 GACCGTCCATCATCCAGACA 59.176 55.000 0.00 0.00 0.00 3.41
5712 7612 0.249073 CGACCGTCCATCATCCAGAC 60.249 60.000 0.00 0.00 0.00 3.51
5713 7613 1.391933 CCGACCGTCCATCATCCAGA 61.392 60.000 0.00 0.00 0.00 3.86
5714 7614 1.068083 CCGACCGTCCATCATCCAG 59.932 63.158 0.00 0.00 0.00 3.86
5715 7615 3.088941 GCCGACCGTCCATCATCCA 62.089 63.158 0.00 0.00 0.00 3.41
5716 7616 2.280186 GCCGACCGTCCATCATCC 60.280 66.667 0.00 0.00 0.00 3.51
5717 7617 1.592669 CTGCCGACCGTCCATCATC 60.593 63.158 0.00 0.00 0.00 2.92
5718 7618 2.501128 CTGCCGACCGTCCATCAT 59.499 61.111 0.00 0.00 0.00 2.45
5719 7619 4.451150 GCTGCCGACCGTCCATCA 62.451 66.667 0.00 0.00 0.00 3.07
5720 7620 4.148825 AGCTGCCGACCGTCCATC 62.149 66.667 0.00 0.00 0.00 3.51
5721 7621 4.148825 GAGCTGCCGACCGTCCAT 62.149 66.667 0.00 0.00 0.00 3.41
5732 7632 4.767255 CACCAGGACCCGAGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
5733 7633 4.767255 GCACCAGGACCCGAGCTG 62.767 72.222 0.00 0.00 0.00 4.24
5736 7636 4.742201 CGTGCACCAGGACCCGAG 62.742 72.222 12.15 0.00 31.56 4.63
5740 7640 4.927782 TGTGCGTGCACCAGGACC 62.928 66.667 21.19 0.00 45.63 4.46
5741 7641 2.896801 CTTGTGCGTGCACCAGGAC 61.897 63.158 21.19 10.31 45.63 3.85
5742 7642 2.591429 CTTGTGCGTGCACCAGGA 60.591 61.111 21.19 0.00 45.63 3.86
5743 7643 2.591429 TCTTGTGCGTGCACCAGG 60.591 61.111 21.47 12.45 45.63 4.45
5744 7644 2.941333 CTCTTGTGCGTGCACCAG 59.059 61.111 21.19 19.15 45.63 4.00
5745 7645 3.279116 GCTCTTGTGCGTGCACCA 61.279 61.111 21.19 10.38 45.63 4.17
5746 7646 4.030452 GGCTCTTGTGCGTGCACC 62.030 66.667 21.19 4.74 45.63 5.01
5747 7647 4.030452 GGGCTCTTGTGCGTGCAC 62.030 66.667 17.72 17.72 46.33 4.57
5750 7650 2.486636 TAGTCGGGCTCTTGTGCGTG 62.487 60.000 0.00 0.00 0.00 5.34
5751 7651 2.214181 CTAGTCGGGCTCTTGTGCGT 62.214 60.000 0.00 0.00 0.00 5.24
5752 7652 1.517257 CTAGTCGGGCTCTTGTGCG 60.517 63.158 0.00 0.00 0.00 5.34
5753 7653 0.815734 TACTAGTCGGGCTCTTGTGC 59.184 55.000 0.00 0.00 0.00 4.57
5754 7654 1.202313 GCTACTAGTCGGGCTCTTGTG 60.202 57.143 0.00 0.00 0.00 3.33
5755 7655 1.104630 GCTACTAGTCGGGCTCTTGT 58.895 55.000 0.00 0.00 0.00 3.16
5756 7656 1.103803 TGCTACTAGTCGGGCTCTTG 58.896 55.000 0.00 0.00 0.00 3.02
5757 7657 1.104630 GTGCTACTAGTCGGGCTCTT 58.895 55.000 0.00 0.00 0.00 2.85
5758 7658 0.034380 TGTGCTACTAGTCGGGCTCT 60.034 55.000 0.00 0.00 0.00 4.09
5759 7659 0.100861 GTGTGCTACTAGTCGGGCTC 59.899 60.000 0.00 4.73 0.00 4.70
5760 7660 1.654954 CGTGTGCTACTAGTCGGGCT 61.655 60.000 0.00 0.00 0.00 5.19
5761 7661 1.226603 CGTGTGCTACTAGTCGGGC 60.227 63.158 0.00 3.47 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.