Multiple sequence alignment - TraesCS3B01G537100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G537100 chr3B 100.000 4182 0 0 1 4182 777032046 777036227 0.000000e+00 7723.0
1 TraesCS3B01G537100 chr3B 80.522 2146 347 49 1104 3213 776863316 776865426 0.000000e+00 1581.0
2 TraesCS3B01G537100 chr3B 77.825 2097 355 63 1104 3165 777001108 777003129 0.000000e+00 1195.0
3 TraesCS3B01G537100 chr3B 84.026 1227 183 9 1993 3213 776997258 776998477 0.000000e+00 1168.0
4 TraesCS3B01G537100 chr3B 92.788 208 15 0 3254 3461 807479976 807479769 6.790000e-78 302.0
5 TraesCS3B01G537100 chr3B 75.654 612 121 19 1325 1925 776996581 776997175 3.180000e-71 279.0
6 TraesCS3B01G537100 chr3B 94.444 36 2 0 852 887 776863179 776863214 5.840000e-04 56.5
7 TraesCS3B01G537100 chr3A 88.079 2978 281 28 303 3254 716596838 716599767 0.000000e+00 3465.0
8 TraesCS3B01G537100 chr3A 85.471 1824 210 36 860 2660 716627423 716629214 0.000000e+00 1849.0
9 TraesCS3B01G537100 chr3A 78.945 2199 377 48 1078 3240 716586824 716588972 0.000000e+00 1417.0
10 TraesCS3B01G537100 chr3A 80.419 669 84 32 852 1497 716567454 716568098 2.280000e-127 466.0
11 TraesCS3B01G537100 chr3D 82.069 1924 289 38 1351 3254 581458710 581456823 0.000000e+00 1591.0
12 TraesCS3B01G537100 chr3D 79.128 2180 375 42 1078 3225 581514906 581512775 0.000000e+00 1432.0
13 TraesCS3B01G537100 chr3D 78.592 2102 364 62 1104 3161 581507693 581505634 0.000000e+00 1310.0
14 TraesCS3B01G537100 chr3D 92.575 862 46 12 1 855 581392427 581391577 0.000000e+00 1221.0
15 TraesCS3B01G537100 chr3D 84.431 957 117 17 1495 2432 581390807 581389864 0.000000e+00 913.0
16 TraesCS3B01G537100 chr3D 78.115 1220 211 37 1328 2514 581420886 581419690 0.000000e+00 723.0
17 TraesCS3B01G537100 chr3D 88.696 115 6 4 933 1047 581391010 581390903 2.620000e-27 134.0
18 TraesCS3B01G537100 chr3D 94.872 39 2 0 852 890 581459499 581459461 1.260000e-05 62.1
19 TraesCS3B01G537100 chr2B 99.034 725 7 0 3458 4182 93126241 93125517 0.000000e+00 1301.0
20 TraesCS3B01G537100 chr2B 78.698 2028 346 59 1177 3165 26573897 26571917 0.000000e+00 1273.0
21 TraesCS3B01G537100 chr2A 99.168 721 6 0 3462 4182 171840350 171839630 0.000000e+00 1299.0
22 TraesCS3B01G537100 chr2A 79.320 1881 315 54 1325 3165 16871511 16869665 0.000000e+00 1251.0
23 TraesCS3B01G537100 chr4B 99.029 721 7 0 3462 4182 445332989 445332269 0.000000e+00 1293.0
24 TraesCS3B01G537100 chr4B 98.338 722 12 0 3461 4182 622882648 622883369 0.000000e+00 1267.0
25 TraesCS3B01G537100 chr4B 92.523 214 14 2 3255 3467 670986696 670986908 5.250000e-79 305.0
26 TraesCS3B01G537100 chr5A 98.753 722 9 0 3461 4182 617307283 617308004 0.000000e+00 1284.0
27 TraesCS3B01G537100 chr6A 98.753 722 8 1 3461 4182 46115657 46114937 0.000000e+00 1282.0
28 TraesCS3B01G537100 chr6A 98.615 722 8 2 3461 4182 46113876 46113157 0.000000e+00 1277.0
29 TraesCS3B01G537100 chrUn 97.503 721 18 0 3462 4182 269559988 269559268 0.000000e+00 1232.0
30 TraesCS3B01G537100 chr1D 96.352 603 22 0 3462 4064 485422615 485423217 0.000000e+00 992.0
31 TraesCS3B01G537100 chr5D 94.258 209 11 1 3254 3461 481672269 481672061 6.750000e-83 318.0
32 TraesCS3B01G537100 chr5D 92.788 208 15 0 3254 3461 254387722 254387929 6.790000e-78 302.0
33 TraesCS3B01G537100 chr5B 93.720 207 13 0 3255 3461 101860355 101860561 1.130000e-80 311.0
34 TraesCS3B01G537100 chr5B 93.237 207 14 0 3255 3461 75663569 75663363 5.250000e-79 305.0
35 TraesCS3B01G537100 chr5B 93.237 207 14 0 3255 3461 373072825 373072619 5.250000e-79 305.0
36 TraesCS3B01G537100 chr4D 93.269 208 14 0 3254 3461 491779626 491779833 1.460000e-79 307.0
37 TraesCS3B01G537100 chr7B 92.754 207 15 0 3255 3461 42367143 42366937 2.440000e-77 300.0
38 TraesCS3B01G537100 chr6D 100.000 121 0 0 4062 4182 360748606 360748726 1.510000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G537100 chr3B 777032046 777036227 4181 False 7723.000000 7723 100.000000 1 4182 1 chr3B.!!$F1 4181
1 TraesCS3B01G537100 chr3B 776996581 777003129 6548 False 880.666667 1195 79.168333 1104 3213 3 chr3B.!!$F3 2109
2 TraesCS3B01G537100 chr3B 776863179 776865426 2247 False 818.750000 1581 87.483000 852 3213 2 chr3B.!!$F2 2361
3 TraesCS3B01G537100 chr3A 716596838 716599767 2929 False 3465.000000 3465 88.079000 303 3254 1 chr3A.!!$F3 2951
4 TraesCS3B01G537100 chr3A 716627423 716629214 1791 False 1849.000000 1849 85.471000 860 2660 1 chr3A.!!$F4 1800
5 TraesCS3B01G537100 chr3A 716586824 716588972 2148 False 1417.000000 1417 78.945000 1078 3240 1 chr3A.!!$F2 2162
6 TraesCS3B01G537100 chr3A 716567454 716568098 644 False 466.000000 466 80.419000 852 1497 1 chr3A.!!$F1 645
7 TraesCS3B01G537100 chr3D 581512775 581514906 2131 True 1432.000000 1432 79.128000 1078 3225 1 chr3D.!!$R3 2147
8 TraesCS3B01G537100 chr3D 581505634 581507693 2059 True 1310.000000 1310 78.592000 1104 3161 1 chr3D.!!$R2 2057
9 TraesCS3B01G537100 chr3D 581456823 581459499 2676 True 826.550000 1591 88.470500 852 3254 2 chr3D.!!$R5 2402
10 TraesCS3B01G537100 chr3D 581389864 581392427 2563 True 756.000000 1221 88.567333 1 2432 3 chr3D.!!$R4 2431
11 TraesCS3B01G537100 chr3D 581419690 581420886 1196 True 723.000000 723 78.115000 1328 2514 1 chr3D.!!$R1 1186
12 TraesCS3B01G537100 chr2B 93125517 93126241 724 True 1301.000000 1301 99.034000 3458 4182 1 chr2B.!!$R2 724
13 TraesCS3B01G537100 chr2B 26571917 26573897 1980 True 1273.000000 1273 78.698000 1177 3165 1 chr2B.!!$R1 1988
14 TraesCS3B01G537100 chr2A 171839630 171840350 720 True 1299.000000 1299 99.168000 3462 4182 1 chr2A.!!$R2 720
15 TraesCS3B01G537100 chr2A 16869665 16871511 1846 True 1251.000000 1251 79.320000 1325 3165 1 chr2A.!!$R1 1840
16 TraesCS3B01G537100 chr4B 445332269 445332989 720 True 1293.000000 1293 99.029000 3462 4182 1 chr4B.!!$R1 720
17 TraesCS3B01G537100 chr4B 622882648 622883369 721 False 1267.000000 1267 98.338000 3461 4182 1 chr4B.!!$F1 721
18 TraesCS3B01G537100 chr5A 617307283 617308004 721 False 1284.000000 1284 98.753000 3461 4182 1 chr5A.!!$F1 721
19 TraesCS3B01G537100 chr6A 46113157 46115657 2500 True 1279.500000 1282 98.684000 3461 4182 2 chr6A.!!$R1 721
20 TraesCS3B01G537100 chrUn 269559268 269559988 720 True 1232.000000 1232 97.503000 3462 4182 1 chrUn.!!$R1 720
21 TraesCS3B01G537100 chr1D 485422615 485423217 602 False 992.000000 992 96.352000 3462 4064 1 chr1D.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 676 0.865769 ACGAAGATGTTTGTGACGGC 59.134 50.0 0.0 0.0 0.0 5.68 F
1688 7474 0.109781 GCGTACACCAATGCAACCTG 60.110 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 7618 0.178953 ACCACAGGAGGCAAATGCTT 60.179 50.0 5.25 0.00 41.70 3.91 R
3357 9216 0.178961 AGTTCAGGGTTTGAAGCCCC 60.179 55.0 13.91 3.63 46.09 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 9.549078 TTGTTACTTTTTCCTGTTTTCTTTTGT 57.451 25.926 0.00 0.00 0.00 2.83
183 189 8.336806 CAATGTCTGTGTTTGCAAAATAATGTT 58.663 29.630 14.67 0.23 0.00 2.71
397 406 9.138062 GTTCCAAAAAGTTGCATTTTGAAAAAT 57.862 25.926 20.41 0.00 45.96 1.82
554 565 8.339714 CAAACTGTATAATACAAATGTACCGGG 58.660 37.037 6.32 0.00 38.38 5.73
586 613 3.686016 GCACCCTGTCTCCAAGAATAAA 58.314 45.455 0.00 0.00 0.00 1.40
587 614 4.273318 GCACCCTGTCTCCAAGAATAAAT 58.727 43.478 0.00 0.00 0.00 1.40
588 615 5.437060 GCACCCTGTCTCCAAGAATAAATA 58.563 41.667 0.00 0.00 0.00 1.40
589 616 6.064717 GCACCCTGTCTCCAAGAATAAATAT 58.935 40.000 0.00 0.00 0.00 1.28
649 676 0.865769 ACGAAGATGTTTGTGACGGC 59.134 50.000 0.00 0.00 0.00 5.68
795 822 2.323968 GGAAACCAGCCAAAGCAAAA 57.676 45.000 0.00 0.00 43.56 2.44
796 823 2.212652 GGAAACCAGCCAAAGCAAAAG 58.787 47.619 0.00 0.00 43.56 2.27
797 824 2.419990 GGAAACCAGCCAAAGCAAAAGT 60.420 45.455 0.00 0.00 43.56 2.66
858 1397 6.585695 TCCTGTACTACCACTACTTCTTTG 57.414 41.667 0.00 0.00 0.00 2.77
1035 1577 1.509787 CTGTTCGTTTGCATCGCCG 60.510 57.895 6.89 0.00 0.00 6.46
1047 1589 2.289631 TGCATCGCCGAATATTCATCCT 60.290 45.455 15.57 0.00 0.00 3.24
1054 1627 3.686726 GCCGAATATTCATCCTGATCACC 59.313 47.826 15.57 0.00 0.00 4.02
1055 1628 3.928992 CCGAATATTCATCCTGATCACCG 59.071 47.826 15.57 0.00 0.00 4.94
1067 1640 4.968719 TCCTGATCACCGGCCAATATATAT 59.031 41.667 0.00 0.00 0.00 0.86
1068 1641 6.140377 TCCTGATCACCGGCCAATATATATA 58.860 40.000 0.00 0.00 0.00 0.86
1171 2129 1.319541 TCTCTGCTACTCGGTATGGC 58.680 55.000 0.00 0.00 0.00 4.40
1172 2130 1.133761 TCTCTGCTACTCGGTATGGCT 60.134 52.381 0.00 0.00 0.00 4.75
1173 2131 2.105993 TCTCTGCTACTCGGTATGGCTA 59.894 50.000 0.00 0.00 0.00 3.93
1215 2188 3.711704 TCTCTTTCACCACCAACTTCTCT 59.288 43.478 0.00 0.00 0.00 3.10
1217 2190 3.711704 TCTTTCACCACCAACTTCTCTCT 59.288 43.478 0.00 0.00 0.00 3.10
1433 7207 1.131883 CTTCCGAATCAAGGCTGCAAG 59.868 52.381 0.50 0.00 0.00 4.01
1493 7270 0.179081 GGGCACTATCCTCCAACGAC 60.179 60.000 0.00 0.00 0.00 4.34
1667 7453 1.137086 CGTCAACTCCATCGAATCCCT 59.863 52.381 0.00 0.00 0.00 4.20
1680 7466 0.623723 AATCCCTGGCGTACACCAAT 59.376 50.000 3.81 0.00 39.86 3.16
1683 7469 1.673993 CCTGGCGTACACCAATGCA 60.674 57.895 3.81 0.00 39.86 3.96
1688 7474 0.109781 GCGTACACCAATGCAACCTG 60.110 55.000 0.00 0.00 0.00 4.00
1723 7509 4.096003 CGTCCGGCCTCCCAATGT 62.096 66.667 0.00 0.00 0.00 2.71
1764 7556 0.249657 CCAAGATCCTAGCAGCCGTC 60.250 60.000 0.00 0.00 0.00 4.79
1816 7618 0.758734 CACCAGTGTTGACCTGAGGA 59.241 55.000 4.99 0.00 31.38 3.71
1821 7623 1.701847 AGTGTTGACCTGAGGAAGCAT 59.298 47.619 4.99 0.00 0.00 3.79
1822 7624 2.107204 AGTGTTGACCTGAGGAAGCATT 59.893 45.455 4.99 0.00 0.00 3.56
1828 7633 1.101331 CCTGAGGAAGCATTTGCCTC 58.899 55.000 0.00 0.00 46.60 4.70
1939 7762 2.256461 CCACGCAAAGCTCCAAGC 59.744 61.111 0.00 0.00 42.84 4.01
2119 7954 4.628333 GCCTTGGACATTTTGATTGTCATG 59.372 41.667 6.20 0.00 44.22 3.07
2125 7960 6.604396 TGGACATTTTGATTGTCATGAGCTAT 59.396 34.615 0.00 0.00 44.22 2.97
2130 7965 3.126073 TGATTGTCATGAGCTATCACGC 58.874 45.455 13.81 0.00 38.57 5.34
2238 8073 3.740115 AGCGGTGGCGATAAAGATATTT 58.260 40.909 0.00 0.00 46.35 1.40
2286 8130 4.228210 AGGAAGGCATTTGAGGATGAACTA 59.772 41.667 0.00 0.00 0.00 2.24
2344 8188 3.741075 CGAATTGATAGGCTGGTGCTACA 60.741 47.826 0.00 0.00 39.59 2.74
2358 8202 2.762459 TACAGCGGCCCGAGGAAT 60.762 61.111 7.68 0.00 0.00 3.01
2361 8205 3.083997 AGCGGCCCGAGGAATCTT 61.084 61.111 7.68 0.00 0.00 2.40
2364 8208 1.521681 CGGCCCGAGGAATCTTGTC 60.522 63.158 0.00 0.00 0.00 3.18
2504 8351 8.555896 TGGTCCAAGAGGTATGTATTGTAATA 57.444 34.615 0.00 0.00 35.89 0.98
2505 8352 9.166222 TGGTCCAAGAGGTATGTATTGTAATAT 57.834 33.333 0.00 0.00 35.89 1.28
2602 8461 4.954202 ACAAACAGGTACGAGATCATCCTA 59.046 41.667 0.00 0.00 0.00 2.94
2706 8565 2.558359 GCAATGTGCTACTTGACCCTTT 59.442 45.455 0.00 0.00 40.96 3.11
2713 8572 2.344025 CTACTTGACCCTTTGTACGGC 58.656 52.381 0.00 0.00 0.00 5.68
2752 8611 2.029110 CGGATTGGCAAGGTTTGTTCAT 60.029 45.455 5.96 0.00 0.00 2.57
2760 8619 5.163322 TGGCAAGGTTTGTTCATCAAGAAAT 60.163 36.000 0.00 0.00 38.13 2.17
2841 8700 1.127951 CAACACGAGCCAACGGAATAC 59.872 52.381 0.00 0.00 37.61 1.89
2872 8731 3.436704 ACATCTACAGTTTCGGCATTGTG 59.563 43.478 0.00 0.00 0.00 3.33
2935 8794 5.608437 TCTTAATGATAGACCTCCATTGCCT 59.392 40.000 0.00 0.00 33.21 4.75
2941 8800 1.637553 AGACCTCCATTGCCTTCATGT 59.362 47.619 0.00 0.00 0.00 3.21
2976 8835 3.466791 ATGGGAATGCGCTCCTCGG 62.467 63.158 14.67 0.00 38.94 4.63
3020 8879 3.371063 GCGAGTCCAGTGTCGGGA 61.371 66.667 4.10 0.00 36.67 5.14
3103 8962 0.824109 GACCGTCCATCATCCAGACA 59.176 55.000 0.00 0.00 0.00 3.41
3118 8977 2.440796 ACAATGGATGCCCTGCGG 60.441 61.111 0.00 0.00 0.00 5.69
3128 8987 3.382832 CCCTGCGGTCGGAGAAGT 61.383 66.667 13.24 0.00 39.69 3.01
3249 9108 7.689299 TGCTATATATGTATTCAAAGGCCACT 58.311 34.615 5.01 0.00 0.00 4.00
3254 9113 4.846779 TGTATTCAAAGGCCACTTGTTC 57.153 40.909 5.01 2.16 36.93 3.18
3255 9114 4.211125 TGTATTCAAAGGCCACTTGTTCA 58.789 39.130 5.01 4.51 36.93 3.18
3256 9115 3.733443 ATTCAAAGGCCACTTGTTCAC 57.267 42.857 5.01 0.00 36.93 3.18
3257 9116 2.435372 TCAAAGGCCACTTGTTCACT 57.565 45.000 5.01 0.00 36.93 3.41
3258 9117 3.569194 TCAAAGGCCACTTGTTCACTA 57.431 42.857 5.01 0.00 36.93 2.74
3259 9118 3.211045 TCAAAGGCCACTTGTTCACTAC 58.789 45.455 5.01 0.00 36.93 2.73
3260 9119 2.948979 CAAAGGCCACTTGTTCACTACA 59.051 45.455 5.01 0.00 36.93 2.74
3261 9120 3.290948 AAGGCCACTTGTTCACTACAA 57.709 42.857 5.01 0.00 44.31 2.41
3275 9134 8.902540 TGTTCACTACAAGAAATATGTCAACT 57.097 30.769 0.00 0.00 32.64 3.16
3276 9135 9.337396 TGTTCACTACAAGAAATATGTCAACTT 57.663 29.630 0.00 0.00 32.64 2.66
3277 9136 9.813080 GTTCACTACAAGAAATATGTCAACTTC 57.187 33.333 0.00 0.00 32.27 3.01
3278 9137 9.778741 TTCACTACAAGAAATATGTCAACTTCT 57.221 29.630 0.00 0.00 32.27 2.85
3279 9138 9.208022 TCACTACAAGAAATATGTCAACTTCTG 57.792 33.333 0.00 0.00 32.27 3.02
3280 9139 9.208022 CACTACAAGAAATATGTCAACTTCTGA 57.792 33.333 0.00 0.00 32.27 3.27
3297 9156 3.917072 GACCTTCTGTCAGTGACCC 57.083 57.895 20.43 0.00 43.85 4.46
3298 9157 1.343069 GACCTTCTGTCAGTGACCCT 58.657 55.000 20.43 0.00 43.85 4.34
3299 9158 1.001406 GACCTTCTGTCAGTGACCCTG 59.999 57.143 20.43 10.65 43.85 4.45
3300 9159 0.322975 CCTTCTGTCAGTGACCCTGG 59.677 60.000 20.43 12.82 41.83 4.45
3301 9160 1.342074 CTTCTGTCAGTGACCCTGGA 58.658 55.000 20.43 10.33 41.83 3.86
3302 9161 1.694150 CTTCTGTCAGTGACCCTGGAA 59.306 52.381 20.43 16.12 41.83 3.53
3303 9162 1.342074 TCTGTCAGTGACCCTGGAAG 58.658 55.000 20.43 9.93 41.83 3.46
3304 9163 1.133167 TCTGTCAGTGACCCTGGAAGA 60.133 52.381 20.43 12.08 41.83 2.87
3305 9164 1.694150 CTGTCAGTGACCCTGGAAGAA 59.306 52.381 20.43 0.00 41.83 2.52
3306 9165 2.304180 CTGTCAGTGACCCTGGAAGAAT 59.696 50.000 20.43 0.00 41.83 2.40
3307 9166 2.711009 TGTCAGTGACCCTGGAAGAATT 59.289 45.455 20.43 0.00 41.83 2.17
3308 9167 3.077359 GTCAGTGACCCTGGAAGAATTG 58.923 50.000 12.54 0.00 41.83 2.32
3309 9168 2.040278 TCAGTGACCCTGGAAGAATTGG 59.960 50.000 0.00 0.00 41.83 3.16
3310 9169 2.065799 AGTGACCCTGGAAGAATTGGT 58.934 47.619 0.00 0.00 34.07 3.67
3311 9170 2.040412 AGTGACCCTGGAAGAATTGGTC 59.960 50.000 0.00 0.00 40.60 4.02
3312 9171 2.061848 TGACCCTGGAAGAATTGGTCA 58.938 47.619 5.61 5.61 45.33 4.02
3313 9172 2.649312 TGACCCTGGAAGAATTGGTCAT 59.351 45.455 5.61 0.00 43.56 3.06
3314 9173 3.849574 TGACCCTGGAAGAATTGGTCATA 59.150 43.478 5.61 0.00 43.56 2.15
3315 9174 4.290985 TGACCCTGGAAGAATTGGTCATAA 59.709 41.667 5.61 0.00 43.56 1.90
3316 9175 5.222233 TGACCCTGGAAGAATTGGTCATAAA 60.222 40.000 5.61 0.00 43.56 1.40
3317 9176 5.842339 ACCCTGGAAGAATTGGTCATAAAT 58.158 37.500 0.00 0.00 34.07 1.40
3318 9177 5.893824 ACCCTGGAAGAATTGGTCATAAATC 59.106 40.000 0.00 0.00 34.07 2.17
3319 9178 6.131961 CCCTGGAAGAATTGGTCATAAATCT 58.868 40.000 0.00 0.00 34.07 2.40
3320 9179 7.091993 ACCCTGGAAGAATTGGTCATAAATCTA 60.092 37.037 0.00 0.00 34.07 1.98
3321 9180 7.229506 CCCTGGAAGAATTGGTCATAAATCTAC 59.770 40.741 0.00 0.00 34.07 2.59
3322 9181 7.041780 CCTGGAAGAATTGGTCATAAATCTACG 60.042 40.741 0.00 0.00 34.07 3.51
3323 9182 7.561251 TGGAAGAATTGGTCATAAATCTACGA 58.439 34.615 0.00 0.00 0.00 3.43
3324 9183 7.494625 TGGAAGAATTGGTCATAAATCTACGAC 59.505 37.037 0.00 0.00 0.00 4.34
3325 9184 7.041984 GGAAGAATTGGTCATAAATCTACGACC 60.042 40.741 0.00 0.00 46.69 4.79
3343 9202 4.802876 GACCATTCGAGATCAATTGGTC 57.197 45.455 10.92 10.92 37.92 4.02
3344 9203 3.545703 ACCATTCGAGATCAATTGGTCC 58.454 45.455 15.20 6.15 0.00 4.46
3345 9204 3.054434 ACCATTCGAGATCAATTGGTCCA 60.054 43.478 15.20 0.00 0.00 4.02
3346 9205 3.947196 CCATTCGAGATCAATTGGTCCAA 59.053 43.478 15.20 6.80 0.00 3.53
3347 9206 4.398988 CCATTCGAGATCAATTGGTCCAAA 59.601 41.667 15.20 7.65 0.00 3.28
3348 9207 5.449588 CCATTCGAGATCAATTGGTCCAAAG 60.450 44.000 15.20 4.74 0.00 2.77
3349 9208 4.286297 TCGAGATCAATTGGTCCAAAGT 57.714 40.909 15.20 0.00 0.00 2.66
3350 9209 4.651778 TCGAGATCAATTGGTCCAAAGTT 58.348 39.130 15.20 0.00 0.00 2.66
3351 9210 4.455533 TCGAGATCAATTGGTCCAAAGTTG 59.544 41.667 15.20 9.84 0.00 3.16
3352 9211 4.216257 CGAGATCAATTGGTCCAAAGTTGT 59.784 41.667 15.20 1.28 0.00 3.32
3353 9212 5.278463 CGAGATCAATTGGTCCAAAGTTGTT 60.278 40.000 15.20 4.92 0.00 2.83
3354 9213 6.089249 AGATCAATTGGTCCAAAGTTGTTC 57.911 37.500 15.20 13.16 0.00 3.18
3355 9214 4.300189 TCAATTGGTCCAAAGTTGTTCG 57.700 40.909 8.75 0.00 0.00 3.95
3356 9215 3.067461 TCAATTGGTCCAAAGTTGTTCGG 59.933 43.478 8.75 0.00 0.00 4.30
3357 9216 1.394618 TTGGTCCAAAGTTGTTCGGG 58.605 50.000 0.40 0.00 0.00 5.14
3358 9217 0.466555 TGGTCCAAAGTTGTTCGGGG 60.467 55.000 0.00 0.00 0.00 5.73
3359 9218 1.176619 GGTCCAAAGTTGTTCGGGGG 61.177 60.000 0.00 0.00 0.00 5.40
3376 9235 3.439440 GGGCTTCAAACCCTGAACT 57.561 52.632 0.00 0.00 44.68 3.01
3377 9236 2.579410 GGGCTTCAAACCCTGAACTA 57.421 50.000 0.00 0.00 44.68 2.24
3378 9237 3.087370 GGGCTTCAAACCCTGAACTAT 57.913 47.619 0.00 0.00 44.68 2.12
3379 9238 4.230745 GGGCTTCAAACCCTGAACTATA 57.769 45.455 0.00 0.00 44.68 1.31
3380 9239 4.595986 GGGCTTCAAACCCTGAACTATAA 58.404 43.478 0.00 0.00 44.68 0.98
3381 9240 4.398358 GGGCTTCAAACCCTGAACTATAAC 59.602 45.833 0.00 0.00 44.68 1.89
3382 9241 4.094442 GGCTTCAAACCCTGAACTATAACG 59.906 45.833 0.00 0.00 39.20 3.18
3383 9242 4.933400 GCTTCAAACCCTGAACTATAACGA 59.067 41.667 0.00 0.00 39.20 3.85
3384 9243 5.163884 GCTTCAAACCCTGAACTATAACGAC 60.164 44.000 0.00 0.00 39.20 4.34
3385 9244 4.824289 TCAAACCCTGAACTATAACGACC 58.176 43.478 0.00 0.00 0.00 4.79
3386 9245 4.283978 TCAAACCCTGAACTATAACGACCA 59.716 41.667 0.00 0.00 0.00 4.02
3387 9246 5.046159 TCAAACCCTGAACTATAACGACCAT 60.046 40.000 0.00 0.00 0.00 3.55
3388 9247 5.431179 AACCCTGAACTATAACGACCATT 57.569 39.130 0.00 0.00 0.00 3.16
3389 9248 5.431179 ACCCTGAACTATAACGACCATTT 57.569 39.130 0.00 0.00 0.00 2.32
3390 9249 5.812286 ACCCTGAACTATAACGACCATTTT 58.188 37.500 0.00 0.00 0.00 1.82
3391 9250 5.646360 ACCCTGAACTATAACGACCATTTTG 59.354 40.000 0.00 0.00 0.00 2.44
3392 9251 5.065988 CCCTGAACTATAACGACCATTTTGG 59.934 44.000 0.00 0.00 45.02 3.28
3410 9269 8.620116 CATTTTGGTCAAAAGGGTCATAATTT 57.380 30.769 13.28 0.00 42.72 1.82
3411 9270 8.720562 CATTTTGGTCAAAAGGGTCATAATTTC 58.279 33.333 13.28 0.00 42.72 2.17
3412 9271 5.993748 TGGTCAAAAGGGTCATAATTTCC 57.006 39.130 0.00 0.00 0.00 3.13
3413 9272 5.650283 TGGTCAAAAGGGTCATAATTTCCT 58.350 37.500 0.00 0.00 0.00 3.36
3414 9273 6.081356 TGGTCAAAAGGGTCATAATTTCCTT 58.919 36.000 0.00 0.00 40.94 3.36
3415 9274 7.242359 TGGTCAAAAGGGTCATAATTTCCTTA 58.758 34.615 0.00 0.00 38.53 2.69
3416 9275 7.177744 TGGTCAAAAGGGTCATAATTTCCTTAC 59.822 37.037 0.00 0.00 38.53 2.34
3417 9276 7.177744 GGTCAAAAGGGTCATAATTTCCTTACA 59.822 37.037 0.00 0.00 38.53 2.41
3418 9277 8.027189 GTCAAAAGGGTCATAATTTCCTTACAC 58.973 37.037 0.00 0.00 38.53 2.90
3419 9278 6.753107 AAAGGGTCATAATTTCCTTACACG 57.247 37.500 0.00 0.00 38.53 4.49
3420 9279 5.687166 AGGGTCATAATTTCCTTACACGA 57.313 39.130 0.00 0.00 0.00 4.35
3421 9280 6.057321 AGGGTCATAATTTCCTTACACGAA 57.943 37.500 0.00 0.00 0.00 3.85
3422 9281 6.659824 AGGGTCATAATTTCCTTACACGAAT 58.340 36.000 0.00 0.00 0.00 3.34
3423 9282 7.116736 AGGGTCATAATTTCCTTACACGAATT 58.883 34.615 0.00 0.00 0.00 2.17
3424 9283 7.067008 AGGGTCATAATTTCCTTACACGAATTG 59.933 37.037 0.00 0.00 0.00 2.32
3425 9284 7.193595 GGTCATAATTTCCTTACACGAATTGG 58.806 38.462 0.00 0.00 0.00 3.16
3426 9285 7.148137 GGTCATAATTTCCTTACACGAATTGGT 60.148 37.037 0.00 0.00 0.00 3.67
3427 9286 7.908601 GTCATAATTTCCTTACACGAATTGGTC 59.091 37.037 0.00 0.00 0.00 4.02
3428 9287 7.608376 TCATAATTTCCTTACACGAATTGGTCA 59.392 33.333 0.00 0.00 0.00 4.02
3429 9288 6.834168 AATTTCCTTACACGAATTGGTCAT 57.166 33.333 0.00 0.00 0.00 3.06
3430 9289 7.931578 AATTTCCTTACACGAATTGGTCATA 57.068 32.000 0.00 0.00 0.00 2.15
3431 9290 7.931578 ATTTCCTTACACGAATTGGTCATAA 57.068 32.000 0.00 0.00 0.00 1.90
3432 9291 7.747155 TTTCCTTACACGAATTGGTCATAAA 57.253 32.000 0.00 0.00 0.00 1.40
3433 9292 6.978343 TCCTTACACGAATTGGTCATAAAG 57.022 37.500 0.00 0.00 0.00 1.85
3434 9293 5.353123 TCCTTACACGAATTGGTCATAAAGC 59.647 40.000 0.00 0.00 0.00 3.51
3435 9294 5.123186 CCTTACACGAATTGGTCATAAAGCA 59.877 40.000 0.00 0.00 0.00 3.91
3436 9295 4.685169 ACACGAATTGGTCATAAAGCAG 57.315 40.909 0.00 0.00 36.57 4.24
3437 9296 4.323417 ACACGAATTGGTCATAAAGCAGA 58.677 39.130 0.00 0.00 36.57 4.26
3438 9297 4.154195 ACACGAATTGGTCATAAAGCAGAC 59.846 41.667 0.00 0.00 36.57 3.51
3439 9298 4.154015 CACGAATTGGTCATAAAGCAGACA 59.846 41.667 0.00 0.00 36.57 3.41
3440 9299 4.393062 ACGAATTGGTCATAAAGCAGACAG 59.607 41.667 0.00 0.00 36.57 3.51
3441 9300 4.666237 GAATTGGTCATAAAGCAGACAGC 58.334 43.478 0.00 0.00 46.19 4.40
3450 9309 3.248029 GCAGACAGCACTGTTCCG 58.752 61.111 4.52 0.00 45.05 4.30
3451 9310 2.959357 GCAGACAGCACTGTTCCGC 61.959 63.158 4.52 4.72 45.05 5.54
3452 9311 1.301244 CAGACAGCACTGTTCCGCT 60.301 57.895 4.52 0.00 45.05 5.52
3456 9315 3.946201 AGCACTGTTCCGCTGCCT 61.946 61.111 0.00 0.00 37.02 4.75
3597 9456 4.562757 GCTCCATCGGCCATTACAGTAATA 60.563 45.833 2.24 0.00 0.00 0.98
3912 9771 1.874739 CGAACACCGCCAGAAAACCTA 60.875 52.381 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 152 7.750014 GCAAACACAGACATTGTTTCAAATTTT 59.250 29.630 0.00 0.00 43.71 1.82
147 153 7.094890 TGCAAACACAGACATTGTTTCAAATTT 60.095 29.630 0.00 0.00 43.71 1.82
157 163 7.853524 ACATTATTTTGCAAACACAGACATTG 58.146 30.769 12.39 0.19 0.00 2.82
541 552 0.329931 TGATGGCCCGGTACATTTGT 59.670 50.000 0.00 0.00 0.00 2.83
545 556 0.393808 GTGTTGATGGCCCGGTACAT 60.394 55.000 0.00 7.74 0.00 2.29
554 565 2.672996 AGGGTGCGTGTTGATGGC 60.673 61.111 0.00 0.00 0.00 4.40
567 578 7.062957 CCAATATTTATTCTTGGAGACAGGGT 58.937 38.462 0.00 0.00 44.54 4.34
649 676 2.878406 ACAATAAGCATTTCCGGATCCG 59.122 45.455 27.65 27.65 39.44 4.18
713 740 4.267928 CCAAGTTCGTTCGTCTATGGAATC 59.732 45.833 0.00 0.00 0.00 2.52
848 1387 4.707448 TCTCCTAGGTGAGCAAAGAAGTAG 59.293 45.833 9.08 0.00 32.22 2.57
858 1397 0.878086 GCGCAATCTCCTAGGTGAGC 60.878 60.000 17.98 13.65 32.22 4.26
1047 1589 5.602561 AGCTATATATATTGGCCGGTGATCA 59.397 40.000 1.90 0.00 0.00 2.92
1054 1627 7.093354 CACATCCTAGCTATATATATTGGCCG 58.907 42.308 0.00 1.75 0.00 6.13
1055 1628 6.876257 GCACATCCTAGCTATATATATTGGCC 59.124 42.308 0.00 0.00 0.00 5.36
1067 1640 3.676049 CGTGAACAAGCACATCCTAGCTA 60.676 47.826 0.00 0.00 40.90 3.32
1068 1641 2.704572 GTGAACAAGCACATCCTAGCT 58.295 47.619 0.00 0.00 44.31 3.32
1171 2129 0.972883 GAGGTAGCAGGAGGCCATAG 59.027 60.000 5.01 0.00 46.50 2.23
1172 2130 0.827925 CGAGGTAGCAGGAGGCCATA 60.828 60.000 5.01 0.00 46.50 2.74
1173 2131 2.136878 CGAGGTAGCAGGAGGCCAT 61.137 63.158 5.01 0.00 46.50 4.40
1181 2151 1.474478 TGAAAGAGAGCGAGGTAGCAG 59.526 52.381 0.00 0.00 40.15 4.24
1215 2188 1.672854 CGTCATAGCCACCGGGAAGA 61.673 60.000 6.32 0.00 35.59 2.87
1217 2190 2.897207 CGTCATAGCCACCGGGAA 59.103 61.111 6.32 0.00 35.59 3.97
1284 2295 2.916702 TTGTCAGATGGATCATCCGG 57.083 50.000 0.00 0.00 41.36 5.14
1323 2334 3.633116 ACCCGGCCTACGCTGTTT 61.633 61.111 0.00 0.00 40.02 2.83
1433 7207 0.804989 GCCACTGGATGTGTTACTGC 59.195 55.000 0.00 0.00 44.81 4.40
1493 7270 2.743718 CGAGGGATTCGGGGATGG 59.256 66.667 0.00 0.00 45.54 3.51
1667 7453 1.519751 GGTTGCATTGGTGTACGCCA 61.520 55.000 24.25 24.25 36.62 5.69
1680 7466 1.609239 CCTATCAGGCCAGGTTGCA 59.391 57.895 5.01 0.00 0.00 4.08
1699 7485 4.803426 GAGGCCGGACGTGAGCTG 62.803 72.222 5.05 0.00 0.00 4.24
1723 7509 0.894835 TCGTAGCTGATGTGGCAAGA 59.105 50.000 0.00 0.00 0.00 3.02
1764 7556 2.802667 CGCGTTGCCGATCTTGAGG 61.803 63.158 0.00 0.00 35.63 3.86
1816 7618 0.178953 ACCACAGGAGGCAAATGCTT 60.179 50.000 5.25 0.00 41.70 3.91
1870 7675 5.301045 AGGATACGATTTGGTGTATCTCGAA 59.699 40.000 10.99 0.00 44.04 3.71
1958 7781 1.002468 GCAGTTTGCACGTCATCTTGT 60.002 47.619 0.00 0.00 44.26 3.16
2011 7846 7.388437 ACAAAGATGCACACAATTCCAATAAT 58.612 30.769 0.00 0.00 0.00 1.28
2018 7853 3.120121 GCGAACAAAGATGCACACAATTC 59.880 43.478 0.00 0.00 0.00 2.17
2130 7965 1.493950 TTGCAAATTTGTTGGCCGCG 61.494 50.000 19.03 0.00 0.00 6.46
2344 8188 3.083997 AAGATTCCTCGGGCCGCT 61.084 61.111 23.83 8.57 0.00 5.52
2358 8202 3.195610 ACCAGCATATGAACTCGACAAGA 59.804 43.478 6.97 0.00 0.00 3.02
2361 8205 2.418609 CCACCAGCATATGAACTCGACA 60.419 50.000 6.97 0.00 0.00 4.35
2364 8208 0.940126 GCCACCAGCATATGAACTCG 59.060 55.000 6.97 0.00 42.97 4.18
2393 8237 4.521639 ACACAAGGAATAGACGAGTGTACA 59.478 41.667 0.00 0.00 37.01 2.90
2400 8244 6.071560 ACAACTCATACACAAGGAATAGACGA 60.072 38.462 0.00 0.00 0.00 4.20
2602 8461 1.118838 GCAGTGCAGATCCTAGGTCT 58.881 55.000 11.09 8.29 0.00 3.85
2695 8554 0.601841 CGCCGTACAAAGGGTCAAGT 60.602 55.000 0.00 0.00 32.95 3.16
2706 8565 1.079681 CCTAACTTGGCGCCGTACA 60.080 57.895 23.90 0.00 0.00 2.90
2713 8572 1.068474 CGAAGTCACCTAACTTGGCG 58.932 55.000 0.00 0.00 39.55 5.69
2752 8611 2.238521 GTCTGTGCCCCAATTTCTTGA 58.761 47.619 0.00 0.00 34.04 3.02
2760 8619 1.426251 ATCTGTGGTCTGTGCCCCAA 61.426 55.000 0.00 0.00 31.17 4.12
2841 8700 0.452184 ACTGTAGATGTCGGACTGCG 59.548 55.000 9.88 0.00 0.00 5.18
2848 8707 1.990799 TGCCGAAACTGTAGATGTCG 58.009 50.000 0.00 0.00 0.00 4.35
2914 8773 5.369404 TGAAGGCAATGGAGGTCTATCATTA 59.631 40.000 0.00 0.00 30.89 1.90
2923 8782 1.076024 ACACATGAAGGCAATGGAGGT 59.924 47.619 0.00 0.00 0.00 3.85
2935 8794 5.931294 TGGTACAAACTCCTTACACATGAA 58.069 37.500 0.00 0.00 31.92 2.57
3020 8879 0.319728 ACACGCTTCATCTGCTGTCT 59.680 50.000 0.00 0.00 0.00 3.41
3118 8977 6.538742 TGATATCCAATTTCAACTTCTCCGAC 59.461 38.462 0.00 0.00 0.00 4.79
3128 8987 5.732331 AGGGGAGTGATATCCAATTTCAA 57.268 39.130 0.00 0.00 41.52 2.69
3225 9084 8.454106 CAAGTGGCCTTTGAATACATATATAGC 58.546 37.037 13.36 0.00 0.00 2.97
3227 9086 9.860650 AACAAGTGGCCTTTGAATACATATATA 57.139 29.630 22.18 0.00 0.00 0.86
3249 9108 9.337396 AGTTGACATATTTCTTGTAGTGAACAA 57.663 29.630 0.00 0.00 45.90 2.83
3254 9113 9.208022 TCAGAAGTTGACATATTTCTTGTAGTG 57.792 33.333 0.00 0.00 0.00 2.74
3280 9139 3.560226 AGGGTCACTGACAGAAGGT 57.440 52.632 10.08 0.00 33.68 3.50
3289 9148 4.119903 GACCAATTCTTCCAGGGTCACTG 61.120 52.174 0.00 0.00 45.70 3.66
3290 9149 2.040412 GACCAATTCTTCCAGGGTCACT 59.960 50.000 0.00 0.00 45.70 3.41
3291 9150 2.437413 GACCAATTCTTCCAGGGTCAC 58.563 52.381 0.00 0.00 45.70 3.67
3292 9151 2.879103 GACCAATTCTTCCAGGGTCA 57.121 50.000 0.00 0.00 45.70 4.02
3293 9152 2.879103 TGACCAATTCTTCCAGGGTC 57.121 50.000 0.00 0.00 46.40 4.46
3294 9153 4.946160 TTATGACCAATTCTTCCAGGGT 57.054 40.909 0.00 0.00 33.78 4.34
3295 9154 6.131961 AGATTTATGACCAATTCTTCCAGGG 58.868 40.000 0.00 0.00 0.00 4.45
3296 9155 7.041780 CGTAGATTTATGACCAATTCTTCCAGG 60.042 40.741 0.00 0.00 0.00 4.45
3297 9156 7.710907 TCGTAGATTTATGACCAATTCTTCCAG 59.289 37.037 0.00 0.00 0.00 3.86
3298 9157 7.494625 GTCGTAGATTTATGACCAATTCTTCCA 59.505 37.037 4.60 0.00 40.67 3.53
3299 9158 7.852516 GTCGTAGATTTATGACCAATTCTTCC 58.147 38.462 4.60 0.00 40.67 3.46
3322 9181 3.561725 GGACCAATTGATCTCGAATGGTC 59.438 47.826 20.00 20.00 42.58 4.02
3323 9182 3.054434 TGGACCAATTGATCTCGAATGGT 60.054 43.478 7.12 6.85 0.00 3.55
3324 9183 3.544684 TGGACCAATTGATCTCGAATGG 58.455 45.455 7.12 0.69 0.00 3.16
3325 9184 5.124457 ACTTTGGACCAATTGATCTCGAATG 59.876 40.000 7.99 6.85 0.00 2.67
3326 9185 5.256474 ACTTTGGACCAATTGATCTCGAAT 58.744 37.500 7.99 0.00 0.00 3.34
3327 9186 4.651778 ACTTTGGACCAATTGATCTCGAA 58.348 39.130 7.99 0.00 0.00 3.71
3328 9187 4.286297 ACTTTGGACCAATTGATCTCGA 57.714 40.909 7.99 0.00 0.00 4.04
3329 9188 4.216257 ACAACTTTGGACCAATTGATCTCG 59.784 41.667 21.94 4.62 0.00 4.04
3330 9189 5.712152 ACAACTTTGGACCAATTGATCTC 57.288 39.130 21.94 0.00 0.00 2.75
3331 9190 5.278463 CGAACAACTTTGGACCAATTGATCT 60.278 40.000 21.94 9.63 0.00 2.75
3332 9191 4.917415 CGAACAACTTTGGACCAATTGATC 59.083 41.667 21.94 18.61 0.00 2.92
3333 9192 4.261994 CCGAACAACTTTGGACCAATTGAT 60.262 41.667 21.94 13.33 32.93 2.57
3334 9193 3.067461 CCGAACAACTTTGGACCAATTGA 59.933 43.478 21.94 2.67 32.93 2.57
3335 9194 3.380142 CCGAACAACTTTGGACCAATTG 58.620 45.455 15.91 15.91 32.93 2.32
3336 9195 2.364002 CCCGAACAACTTTGGACCAATT 59.636 45.455 7.99 0.00 32.93 2.32
3337 9196 1.960689 CCCGAACAACTTTGGACCAAT 59.039 47.619 7.99 0.00 32.93 3.16
3338 9197 1.394618 CCCGAACAACTTTGGACCAA 58.605 50.000 1.69 1.69 32.93 3.67
3339 9198 0.466555 CCCCGAACAACTTTGGACCA 60.467 55.000 0.00 0.00 32.93 4.02
3340 9199 1.176619 CCCCCGAACAACTTTGGACC 61.177 60.000 0.00 0.00 32.93 4.46
3341 9200 2.337361 CCCCCGAACAACTTTGGAC 58.663 57.895 0.00 0.00 32.93 4.02
3342 9201 4.911901 CCCCCGAACAACTTTGGA 57.088 55.556 0.00 0.00 32.93 3.53
3356 9215 1.185618 GTTCAGGGTTTGAAGCCCCC 61.186 60.000 13.91 0.95 46.09 5.40
3357 9216 0.178961 AGTTCAGGGTTTGAAGCCCC 60.179 55.000 13.91 3.63 46.09 5.80
3358 9217 2.579410 TAGTTCAGGGTTTGAAGCCC 57.421 50.000 9.32 9.32 46.09 5.19
3359 9218 4.094442 CGTTATAGTTCAGGGTTTGAAGCC 59.906 45.833 3.81 3.81 46.09 4.35
3360 9219 4.933400 TCGTTATAGTTCAGGGTTTGAAGC 59.067 41.667 0.00 0.00 46.09 3.86
3361 9220 5.350640 GGTCGTTATAGTTCAGGGTTTGAAG 59.649 44.000 0.00 0.00 46.09 3.02
3362 9221 5.221682 TGGTCGTTATAGTTCAGGGTTTGAA 60.222 40.000 0.00 0.00 43.40 2.69
3363 9222 4.283978 TGGTCGTTATAGTTCAGGGTTTGA 59.716 41.667 0.00 0.00 0.00 2.69
3364 9223 4.571919 TGGTCGTTATAGTTCAGGGTTTG 58.428 43.478 0.00 0.00 0.00 2.93
3365 9224 4.895668 TGGTCGTTATAGTTCAGGGTTT 57.104 40.909 0.00 0.00 0.00 3.27
3366 9225 5.431179 AATGGTCGTTATAGTTCAGGGTT 57.569 39.130 0.00 0.00 0.00 4.11
3367 9226 5.431179 AAATGGTCGTTATAGTTCAGGGT 57.569 39.130 0.00 0.00 0.00 4.34
3368 9227 5.065988 CCAAAATGGTCGTTATAGTTCAGGG 59.934 44.000 0.00 0.00 31.35 4.45
3369 9228 6.119144 CCAAAATGGTCGTTATAGTTCAGG 57.881 41.667 0.00 0.00 31.35 3.86
3384 9243 4.622260 ATGACCCTTTTGACCAAAATGG 57.378 40.909 20.49 20.49 45.54 3.16
3385 9244 8.620116 AAATTATGACCCTTTTGACCAAAATG 57.380 30.769 8.19 6.07 39.29 2.32
3386 9245 7.882791 GGAAATTATGACCCTTTTGACCAAAAT 59.117 33.333 8.19 0.00 39.29 1.82
3387 9246 7.071824 AGGAAATTATGACCCTTTTGACCAAAA 59.928 33.333 7.57 7.57 37.90 2.44
3388 9247 6.556874 AGGAAATTATGACCCTTTTGACCAAA 59.443 34.615 0.00 0.00 0.00 3.28
3389 9248 6.081356 AGGAAATTATGACCCTTTTGACCAA 58.919 36.000 0.00 0.00 0.00 3.67
3390 9249 5.650283 AGGAAATTATGACCCTTTTGACCA 58.350 37.500 0.00 0.00 0.00 4.02
3391 9250 6.605471 AAGGAAATTATGACCCTTTTGACC 57.395 37.500 0.00 0.00 35.64 4.02
3392 9251 8.027189 GTGTAAGGAAATTATGACCCTTTTGAC 58.973 37.037 0.00 0.00 39.51 3.18
3393 9252 7.094549 CGTGTAAGGAAATTATGACCCTTTTGA 60.095 37.037 0.00 0.00 39.51 2.69
3394 9253 7.027161 CGTGTAAGGAAATTATGACCCTTTTG 58.973 38.462 0.00 0.00 39.51 2.44
3395 9254 6.943718 TCGTGTAAGGAAATTATGACCCTTTT 59.056 34.615 0.00 0.00 39.51 2.27
3396 9255 6.478129 TCGTGTAAGGAAATTATGACCCTTT 58.522 36.000 0.00 0.00 39.51 3.11
3397 9256 6.057321 TCGTGTAAGGAAATTATGACCCTT 57.943 37.500 0.00 0.00 41.47 3.95
3398 9257 5.687166 TCGTGTAAGGAAATTATGACCCT 57.313 39.130 0.00 0.00 0.00 4.34
3399 9258 6.937436 ATTCGTGTAAGGAAATTATGACCC 57.063 37.500 0.00 0.00 44.59 4.46
3400 9259 7.148137 ACCAATTCGTGTAAGGAAATTATGACC 60.148 37.037 0.00 0.00 44.59 4.02
3401 9260 7.758495 ACCAATTCGTGTAAGGAAATTATGAC 58.242 34.615 0.00 0.00 44.59 3.06
3402 9261 7.608376 TGACCAATTCGTGTAAGGAAATTATGA 59.392 33.333 0.00 0.00 44.59 2.15
3403 9262 7.757526 TGACCAATTCGTGTAAGGAAATTATG 58.242 34.615 0.00 0.00 44.59 1.90
3404 9263 7.931578 TGACCAATTCGTGTAAGGAAATTAT 57.068 32.000 0.00 0.00 44.59 1.28
3405 9264 7.931578 ATGACCAATTCGTGTAAGGAAATTA 57.068 32.000 0.00 0.00 44.59 1.40
3406 9265 6.834168 ATGACCAATTCGTGTAAGGAAATT 57.166 33.333 0.00 0.00 44.59 1.82
3407 9266 7.931578 TTATGACCAATTCGTGTAAGGAAAT 57.068 32.000 0.00 0.00 44.59 2.17
3408 9267 7.574217 GCTTTATGACCAATTCGTGTAAGGAAA 60.574 37.037 0.00 0.00 44.59 3.13
3409 9268 6.128117 GCTTTATGACCAATTCGTGTAAGGAA 60.128 38.462 0.00 0.00 45.59 3.36
3410 9269 5.353123 GCTTTATGACCAATTCGTGTAAGGA 59.647 40.000 0.00 0.00 0.00 3.36
3411 9270 5.123186 TGCTTTATGACCAATTCGTGTAAGG 59.877 40.000 0.00 0.00 0.00 2.69
3412 9271 6.092122 TCTGCTTTATGACCAATTCGTGTAAG 59.908 38.462 0.00 0.00 0.00 2.34
3413 9272 5.935206 TCTGCTTTATGACCAATTCGTGTAA 59.065 36.000 0.00 0.00 0.00 2.41
3414 9273 5.350365 GTCTGCTTTATGACCAATTCGTGTA 59.650 40.000 0.00 0.00 0.00 2.90
3415 9274 4.154195 GTCTGCTTTATGACCAATTCGTGT 59.846 41.667 0.00 0.00 0.00 4.49
3416 9275 4.154015 TGTCTGCTTTATGACCAATTCGTG 59.846 41.667 0.00 0.00 32.67 4.35
3417 9276 4.323417 TGTCTGCTTTATGACCAATTCGT 58.677 39.130 0.00 0.00 32.67 3.85
3418 9277 4.728882 GCTGTCTGCTTTATGACCAATTCG 60.729 45.833 0.00 0.00 38.95 3.34
3419 9278 4.156556 TGCTGTCTGCTTTATGACCAATTC 59.843 41.667 3.20 0.00 43.37 2.17
3420 9279 4.081406 TGCTGTCTGCTTTATGACCAATT 58.919 39.130 3.20 0.00 43.37 2.32
3421 9280 3.441572 GTGCTGTCTGCTTTATGACCAAT 59.558 43.478 3.20 0.00 43.37 3.16
3422 9281 2.813754 GTGCTGTCTGCTTTATGACCAA 59.186 45.455 3.20 0.00 43.37 3.67
3423 9282 2.038952 AGTGCTGTCTGCTTTATGACCA 59.961 45.455 3.20 0.00 43.37 4.02
3424 9283 2.417933 CAGTGCTGTCTGCTTTATGACC 59.582 50.000 3.20 0.00 43.37 4.02
3425 9284 3.070018 ACAGTGCTGTCTGCTTTATGAC 58.930 45.455 0.00 0.00 40.24 3.06
3426 9285 3.407424 ACAGTGCTGTCTGCTTTATGA 57.593 42.857 0.00 0.00 40.24 2.15
3427 9286 3.120060 GGAACAGTGCTGTCTGCTTTATG 60.120 47.826 5.22 0.15 44.13 1.90
3428 9287 3.077359 GGAACAGTGCTGTCTGCTTTAT 58.923 45.455 5.22 0.00 44.13 1.40
3429 9288 2.494059 GGAACAGTGCTGTCTGCTTTA 58.506 47.619 5.22 0.00 44.13 1.85
3430 9289 1.312815 GGAACAGTGCTGTCTGCTTT 58.687 50.000 5.22 0.00 44.13 3.51
3431 9290 0.882042 CGGAACAGTGCTGTCTGCTT 60.882 55.000 5.22 0.00 44.13 3.91
3432 9291 1.301244 CGGAACAGTGCTGTCTGCT 60.301 57.895 5.22 0.00 44.13 4.24
3433 9292 2.959357 GCGGAACAGTGCTGTCTGC 61.959 63.158 5.22 11.24 44.13 4.26
3434 9293 1.301244 AGCGGAACAGTGCTGTCTG 60.301 57.895 5.22 5.93 44.13 3.51
3435 9294 3.142393 AGCGGAACAGTGCTGTCT 58.858 55.556 5.22 0.00 44.13 3.41
3439 9298 2.111999 TAAGGCAGCGGAACAGTGCT 62.112 55.000 0.00 0.00 43.58 4.40
3440 9299 1.026718 ATAAGGCAGCGGAACAGTGC 61.027 55.000 0.00 0.00 36.42 4.40
3441 9300 1.398390 GAATAAGGCAGCGGAACAGTG 59.602 52.381 0.00 0.00 0.00 3.66
3442 9301 1.003118 TGAATAAGGCAGCGGAACAGT 59.997 47.619 0.00 0.00 0.00 3.55
3443 9302 1.398390 GTGAATAAGGCAGCGGAACAG 59.602 52.381 0.00 0.00 0.00 3.16
3444 9303 1.003118 AGTGAATAAGGCAGCGGAACA 59.997 47.619 0.00 0.00 0.00 3.18
3445 9304 1.739067 AGTGAATAAGGCAGCGGAAC 58.261 50.000 0.00 0.00 0.00 3.62
3446 9305 2.500098 AGTAGTGAATAAGGCAGCGGAA 59.500 45.455 0.00 0.00 0.00 4.30
3447 9306 2.108168 AGTAGTGAATAAGGCAGCGGA 58.892 47.619 0.00 0.00 0.00 5.54
3448 9307 2.604046 AGTAGTGAATAAGGCAGCGG 57.396 50.000 0.00 0.00 0.00 5.52
3449 9308 4.569761 TCTAGTAGTGAATAAGGCAGCG 57.430 45.455 0.00 0.00 0.00 5.18
3450 9309 9.145865 GAAATATCTAGTAGTGAATAAGGCAGC 57.854 37.037 0.00 0.00 0.00 5.25
3695 9554 0.782384 CCGTCGGCTATAAATGTCGC 59.218 55.000 0.00 0.00 0.00 5.19
3912 9771 3.821033 GTGTTTGCTCACCCTTGACTAAT 59.179 43.478 0.00 0.00 32.81 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.