Multiple sequence alignment - TraesCS3B01G536100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G536100 chr3B 100.000 2825 0 0 1 2825 776122393 776119569 0.000000e+00 5217.0
1 TraesCS3B01G536100 chr3B 89.194 620 37 17 1 614 798293118 798293713 0.000000e+00 747.0
2 TraesCS3B01G536100 chr3B 92.531 241 11 1 374 614 776127015 776126782 3.490000e-89 339.0
3 TraesCS3B01G536100 chr3B 79.218 409 83 2 1434 1841 778443136 778443543 1.660000e-72 283.0
4 TraesCS3B01G536100 chr3B 82.132 319 52 3 1001 1315 778456139 778456456 4.640000e-68 268.0
5 TraesCS3B01G536100 chr3B 81.250 320 57 3 1523 1841 778432808 778433125 3.610000e-64 255.0
6 TraesCS3B01G536100 chr3D 91.737 1416 87 19 622 2013 580588052 580586643 0.000000e+00 1940.0
7 TraesCS3B01G536100 chr3D 88.368 619 47 13 1 614 539878395 539877797 0.000000e+00 721.0
8 TraesCS3B01G536100 chr3D 90.594 202 13 3 614 812 580602304 580602106 2.160000e-66 263.0
9 TraesCS3B01G536100 chr3D 81.350 311 55 1 1007 1314 582826276 582825966 1.680000e-62 250.0
10 TraesCS3B01G536100 chr3D 92.771 166 9 2 804 968 580593532 580593369 1.310000e-58 237.0
11 TraesCS3B01G536100 chr3A 89.123 1232 91 22 614 1840 716098564 716097371 0.000000e+00 1493.0
12 TraesCS3B01G536100 chr3A 90.000 840 57 14 614 1439 716106923 716106097 0.000000e+00 1061.0
13 TraesCS3B01G536100 chr3A 85.243 515 45 6 1434 1947 716105926 716105442 4.200000e-138 501.0
14 TraesCS3B01G536100 chr3A 91.429 175 12 2 1865 2037 716096715 716096542 1.310000e-58 237.0
15 TraesCS3B01G536100 chr4D 87.948 614 49 13 1 614 336699897 336699309 0.000000e+00 701.0
16 TraesCS3B01G536100 chr1A 87.602 613 48 9 1 613 583256893 583257477 0.000000e+00 686.0
17 TraesCS3B01G536100 chr1A 83.495 618 67 22 1 613 399237202 399236615 6.880000e-151 544.0
18 TraesCS3B01G536100 chr1A 83.172 618 69 21 1 613 30562163 30562750 1.490000e-147 532.0
19 TraesCS3B01G536100 chr1A 86.939 245 22 5 370 614 583252291 583252525 1.670000e-67 267.0
20 TraesCS3B01G536100 chr6D 86.341 615 56 15 1 614 14358109 14358696 0.000000e+00 645.0
21 TraesCS3B01G536100 chr6D 86.016 615 58 16 1 614 14323327 14322740 3.970000e-178 634.0
22 TraesCS3B01G536100 chr7A 84.219 621 69 13 1 613 176193889 176193290 6.790000e-161 577.0
23 TraesCS3B01G536100 chr4A 84.253 616 66 18 1 613 607333760 607333173 3.160000e-159 571.0
24 TraesCS3B01G536100 chr1D 89.894 376 32 5 2092 2463 134647626 134647999 1.970000e-131 479.0
25 TraesCS3B01G536100 chr1D 89.751 361 32 4 2467 2825 134647955 134648312 9.220000e-125 457.0
26 TraesCS3B01G536100 chr1D 82.329 249 28 10 374 614 454763893 454763653 4.770000e-48 202.0
27 TraesCS3B01G536100 chr5B 83.716 436 53 8 1 433 684121495 684121075 2.040000e-106 396.0
28 TraesCS3B01G536100 chr5D 80.354 509 71 20 15 512 449889704 449889214 2.680000e-95 359.0
29 TraesCS3B01G536100 chr2D 88.703 239 17 7 375 613 14042613 14042385 1.660000e-72 283.0
30 TraesCS3B01G536100 chr2B 100.000 28 0 0 2467 2494 505812290 505812263 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G536100 chr3B 776119569 776122393 2824 True 5217 5217 100.0000 1 2825 1 chr3B.!!$R1 2824
1 TraesCS3B01G536100 chr3B 798293118 798293713 595 False 747 747 89.1940 1 614 1 chr3B.!!$F4 613
2 TraesCS3B01G536100 chr3D 580586643 580588052 1409 True 1940 1940 91.7370 622 2013 1 chr3D.!!$R2 1391
3 TraesCS3B01G536100 chr3D 539877797 539878395 598 True 721 721 88.3680 1 614 1 chr3D.!!$R1 613
4 TraesCS3B01G536100 chr3A 716096542 716098564 2022 True 865 1493 90.2760 614 2037 2 chr3A.!!$R1 1423
5 TraesCS3B01G536100 chr3A 716105442 716106923 1481 True 781 1061 87.6215 614 1947 2 chr3A.!!$R2 1333
6 TraesCS3B01G536100 chr4D 336699309 336699897 588 True 701 701 87.9480 1 614 1 chr4D.!!$R1 613
7 TraesCS3B01G536100 chr1A 583256893 583257477 584 False 686 686 87.6020 1 613 1 chr1A.!!$F3 612
8 TraesCS3B01G536100 chr1A 399236615 399237202 587 True 544 544 83.4950 1 613 1 chr1A.!!$R1 612
9 TraesCS3B01G536100 chr1A 30562163 30562750 587 False 532 532 83.1720 1 613 1 chr1A.!!$F1 612
10 TraesCS3B01G536100 chr6D 14358109 14358696 587 False 645 645 86.3410 1 614 1 chr6D.!!$F1 613
11 TraesCS3B01G536100 chr6D 14322740 14323327 587 True 634 634 86.0160 1 614 1 chr6D.!!$R1 613
12 TraesCS3B01G536100 chr7A 176193290 176193889 599 True 577 577 84.2190 1 613 1 chr7A.!!$R1 612
13 TraesCS3B01G536100 chr4A 607333173 607333760 587 True 571 571 84.2530 1 613 1 chr4A.!!$R1 612
14 TraesCS3B01G536100 chr1D 134647626 134648312 686 False 468 479 89.8225 2092 2825 2 chr1D.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 230 0.839946 AGGACTTGCGCCTTCCATAT 59.160 50.0 18.25 0.0 29.44 1.78 F
1091 1131 0.173708 CTCAAGGGAGTCGCCTACAC 59.826 60.0 3.13 0.0 36.36 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1756 0.035725 CCTTCAGCTGCATCTCCACA 60.036 55.0 9.47 0.0 0.0 4.17 R
2056 2933 0.106894 CGGAACAATAGGGGAGCCTC 59.893 60.0 0.00 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 1.338769 ACGTAAGCACCTGTTGATCCC 60.339 52.381 0.00 0.00 45.62 3.85
110 113 2.076863 CGTGGTGATGGTTTCCTTCTC 58.923 52.381 3.94 0.89 0.00 2.87
119 122 1.534717 TTTCCTTCTCCCCGTCGGT 60.535 57.895 11.06 0.00 0.00 4.69
188 191 1.216064 TCAAGGTAGCCCATCATGCT 58.784 50.000 0.00 0.00 42.81 3.79
227 230 0.839946 AGGACTTGCGCCTTCCATAT 59.160 50.000 18.25 0.00 29.44 1.78
286 289 3.604629 CGAGAGGAAGCGAGGGAA 58.395 61.111 0.00 0.00 0.00 3.97
287 290 1.435515 CGAGAGGAAGCGAGGGAAG 59.564 63.158 0.00 0.00 0.00 3.46
288 291 1.819905 GAGAGGAAGCGAGGGAAGG 59.180 63.158 0.00 0.00 0.00 3.46
289 292 1.681486 GAGAGGAAGCGAGGGAAGGG 61.681 65.000 0.00 0.00 0.00 3.95
290 293 2.689034 AGGAAGCGAGGGAAGGGG 60.689 66.667 0.00 0.00 0.00 4.79
291 294 2.687566 GGAAGCGAGGGAAGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
292 295 2.736826 GGAAGCGAGGGAAGGGGAG 61.737 68.421 0.00 0.00 0.00 4.30
356 359 1.207329 GACCTAGATGCGTTGGAAGGT 59.793 52.381 0.00 0.00 39.99 3.50
370 373 4.422073 TGGAAGGTATTGGCTCTGTATG 57.578 45.455 0.00 0.00 0.00 2.39
397 400 3.437049 GTGAGAATTGAGGCTAAAGCGTT 59.563 43.478 0.00 0.00 43.26 4.84
446 451 8.116753 CGTGTTTTATAGGAGCAAAGATTACAG 58.883 37.037 0.00 0.00 0.00 2.74
531 551 2.674420 CCTGACCTATCCGAACCCTTA 58.326 52.381 0.00 0.00 0.00 2.69
537 557 4.613437 ACCTATCCGAACCCTTAGTTACA 58.387 43.478 0.00 0.00 39.40 2.41
538 558 5.025453 ACCTATCCGAACCCTTAGTTACAA 58.975 41.667 0.00 0.00 39.40 2.41
539 559 5.105187 ACCTATCCGAACCCTTAGTTACAAC 60.105 44.000 0.00 0.00 39.40 3.32
547 576 6.073602 CGAACCCTTAGTTACAACTTACAACC 60.074 42.308 0.00 0.00 39.40 3.77
614 643 6.036626 CACCGTATTATACATTGCTTGACACA 59.963 38.462 3.16 0.00 0.00 3.72
615 644 6.036735 ACCGTATTATACATTGCTTGACACAC 59.963 38.462 3.16 0.00 0.00 3.82
616 645 6.257849 CCGTATTATACATTGCTTGACACACT 59.742 38.462 3.16 0.00 0.00 3.55
617 646 7.436970 CCGTATTATACATTGCTTGACACACTA 59.563 37.037 3.16 0.00 0.00 2.74
618 647 8.480066 CGTATTATACATTGCTTGACACACTAG 58.520 37.037 3.16 0.00 0.00 2.57
619 648 6.662414 TTATACATTGCTTGACACACTAGC 57.338 37.500 0.00 0.00 44.95 3.42
620 649 1.800586 ACATTGCTTGACACACTAGCG 59.199 47.619 0.00 0.00 46.96 4.26
625 654 1.597663 GCTTGACACACTAGCGTTTGT 59.402 47.619 0.00 0.00 36.79 2.83
664 693 3.695606 TCTGCGGCCGAGAAAGCT 61.696 61.111 33.48 0.00 0.00 3.74
697 726 2.482333 CGGAAGGAGACGAGGCGAT 61.482 63.158 0.00 0.00 0.00 4.58
759 788 4.588528 TCATCACCATCGTCTCATATTCCA 59.411 41.667 0.00 0.00 0.00 3.53
796 825 2.479566 ATGCTTTCACACGGTGAGAT 57.520 45.000 16.29 0.00 43.69 2.75
797 826 2.254546 TGCTTTCACACGGTGAGATT 57.745 45.000 16.29 0.00 43.69 2.40
886 917 4.457257 GCAACCAGCAGTCTTCTTTCTATT 59.543 41.667 0.00 0.00 44.79 1.73
910 941 4.874966 CCAAAAGACAAAGGCAAAATGACA 59.125 37.500 0.00 0.00 0.00 3.58
1090 1130 0.970937 CCTCAAGGGAGTCGCCTACA 60.971 60.000 3.13 0.00 39.64 2.74
1091 1131 0.173708 CTCAAGGGAGTCGCCTACAC 59.826 60.000 3.13 0.00 36.36 2.90
1316 1360 4.830826 AGTTCTTTGCGGAAAAGGTTAG 57.169 40.909 8.58 0.00 44.69 2.34
1317 1361 4.204799 AGTTCTTTGCGGAAAAGGTTAGT 58.795 39.130 8.58 0.00 44.69 2.24
1338 1388 9.994432 GTTAGTATGCATGCCTGAATATTATTC 57.006 33.333 16.68 9.11 0.00 1.75
1377 1427 5.066634 TCGTTGTTGCAAAAAGTAGGATTCA 59.933 36.000 1.16 0.00 0.00 2.57
1390 1440 5.313712 AGTAGGATTCACCAACAAATTCGT 58.686 37.500 0.00 0.00 42.04 3.85
1485 1720 1.671742 GGAGGGCGAGACACAGAAA 59.328 57.895 0.00 0.00 0.00 2.52
1510 1745 4.237843 TCTCATGGAGGATGCTAAGGAAT 58.762 43.478 0.00 0.00 31.32 3.01
1529 1764 4.202264 GGAATACCTGACGATTGTGGAGAT 60.202 45.833 0.00 0.00 0.00 2.75
1536 1771 0.656259 CGATTGTGGAGATGCAGCTG 59.344 55.000 10.40 10.11 0.00 4.24
1541 1776 0.747283 GTGGAGATGCAGCTGAAGGG 60.747 60.000 20.43 0.00 0.00 3.95
1701 1936 0.824759 GGATGGAGGACTACAACGCT 59.175 55.000 0.00 0.00 0.00 5.07
1779 2014 2.622436 GCTATCAGAGGAAAGTGCGTT 58.378 47.619 0.00 0.00 0.00 4.84
1852 2095 2.906354 CTAGTGGTTAGCATGACCCAC 58.094 52.381 12.81 12.81 46.17 4.61
1925 2800 5.811399 TGGTGGAATGTTATTGTTCGATC 57.189 39.130 0.00 0.00 0.00 3.69
1926 2801 5.249420 TGGTGGAATGTTATTGTTCGATCA 58.751 37.500 0.00 0.00 0.00 2.92
1927 2802 5.707764 TGGTGGAATGTTATTGTTCGATCAA 59.292 36.000 11.13 11.13 0.00 2.57
1929 2804 7.093988 TGGTGGAATGTTATTGTTCGATCAAAT 60.094 33.333 12.62 3.41 0.00 2.32
2020 2897 5.418524 TGGTTGATAACTGAAACATCCATGG 59.581 40.000 4.97 4.97 30.44 3.66
2029 2906 5.011023 ACTGAAACATCCATGGGTTCTTTTC 59.989 40.000 13.02 13.25 31.28 2.29
2031 2908 3.433306 ACATCCATGGGTTCTTTTCGA 57.567 42.857 13.02 0.00 0.00 3.71
2037 2914 4.941263 TCCATGGGTTCTTTTCGACATAAG 59.059 41.667 13.02 0.00 0.00 1.73
2038 2915 4.941263 CCATGGGTTCTTTTCGACATAAGA 59.059 41.667 2.85 0.00 0.00 2.10
2039 2916 5.590259 CCATGGGTTCTTTTCGACATAAGAT 59.410 40.000 2.85 0.00 31.00 2.40
2040 2917 6.458751 CCATGGGTTCTTTTCGACATAAGATG 60.459 42.308 2.85 1.69 31.00 2.90
2041 2918 4.394920 TGGGTTCTTTTCGACATAAGATGC 59.605 41.667 5.06 2.87 31.00 3.91
2042 2919 4.636206 GGGTTCTTTTCGACATAAGATGCT 59.364 41.667 5.06 0.00 31.00 3.79
2043 2920 5.123979 GGGTTCTTTTCGACATAAGATGCTT 59.876 40.000 5.06 0.00 31.00 3.91
2044 2921 6.024049 GGTTCTTTTCGACATAAGATGCTTG 58.976 40.000 5.06 0.00 31.00 4.01
2045 2922 5.221891 TCTTTTCGACATAAGATGCTTGC 57.778 39.130 0.00 0.00 0.00 4.01
2046 2923 4.094887 TCTTTTCGACATAAGATGCTTGCC 59.905 41.667 0.00 0.00 0.00 4.52
2047 2924 1.570813 TCGACATAAGATGCTTGCCG 58.429 50.000 0.00 0.00 0.00 5.69
2048 2925 1.136110 TCGACATAAGATGCTTGCCGA 59.864 47.619 0.00 0.00 0.00 5.54
2049 2926 1.258982 CGACATAAGATGCTTGCCGAC 59.741 52.381 0.00 0.00 0.00 4.79
2050 2927 2.279741 GACATAAGATGCTTGCCGACA 58.720 47.619 0.00 0.00 0.00 4.35
2051 2928 2.874701 GACATAAGATGCTTGCCGACAT 59.125 45.455 0.00 0.00 0.00 3.06
2052 2929 3.282021 ACATAAGATGCTTGCCGACATT 58.718 40.909 0.00 0.00 0.00 2.71
2053 2930 3.696051 ACATAAGATGCTTGCCGACATTT 59.304 39.130 0.00 0.00 0.00 2.32
2054 2931 4.158394 ACATAAGATGCTTGCCGACATTTT 59.842 37.500 0.00 0.00 0.00 1.82
2055 2932 2.642139 AGATGCTTGCCGACATTTTG 57.358 45.000 0.00 0.00 0.00 2.44
2056 2933 1.203052 AGATGCTTGCCGACATTTTGG 59.797 47.619 0.00 0.00 0.00 3.28
2057 2934 1.202114 GATGCTTGCCGACATTTTGGA 59.798 47.619 0.00 0.00 0.00 3.53
2058 2935 0.597568 TGCTTGCCGACATTTTGGAG 59.402 50.000 0.00 0.00 0.00 3.86
2059 2936 0.109132 GCTTGCCGACATTTTGGAGG 60.109 55.000 0.00 0.00 0.00 4.30
2060 2937 0.109132 CTTGCCGACATTTTGGAGGC 60.109 55.000 8.07 8.07 41.94 4.70
2061 2938 0.539438 TTGCCGACATTTTGGAGGCT 60.539 50.000 13.78 0.00 42.05 4.58
2062 2939 0.960364 TGCCGACATTTTGGAGGCTC 60.960 55.000 5.78 5.78 42.05 4.70
2063 2940 1.657751 GCCGACATTTTGGAGGCTCC 61.658 60.000 26.95 26.95 39.69 4.70
2064 2941 1.032114 CCGACATTTTGGAGGCTCCC 61.032 60.000 30.03 13.12 35.03 4.30
2065 2942 1.032114 CGACATTTTGGAGGCTCCCC 61.032 60.000 30.03 8.31 35.03 4.81
2066 2943 0.332972 GACATTTTGGAGGCTCCCCT 59.667 55.000 30.03 9.59 46.74 4.79
2067 2944 1.564348 GACATTTTGGAGGCTCCCCTA 59.436 52.381 30.03 15.26 43.12 3.53
2068 2945 2.175715 GACATTTTGGAGGCTCCCCTAT 59.824 50.000 30.03 16.79 43.12 2.57
2069 2946 2.587307 ACATTTTGGAGGCTCCCCTATT 59.413 45.455 30.03 9.04 43.12 1.73
2070 2947 2.826674 TTTTGGAGGCTCCCCTATTG 57.173 50.000 30.03 0.00 43.12 1.90
2071 2948 1.681229 TTTGGAGGCTCCCCTATTGT 58.319 50.000 30.03 0.00 43.12 2.71
2072 2949 1.681229 TTGGAGGCTCCCCTATTGTT 58.319 50.000 30.03 0.00 43.12 2.83
2073 2950 1.213296 TGGAGGCTCCCCTATTGTTC 58.787 55.000 30.03 2.05 43.12 3.18
2074 2951 0.474614 GGAGGCTCCCCTATTGTTCC 59.525 60.000 23.49 0.00 43.12 3.62
2075 2952 0.106894 GAGGCTCCCCTATTGTTCCG 59.893 60.000 2.15 0.00 43.12 4.30
2076 2953 0.326238 AGGCTCCCCTATTGTTCCGA 60.326 55.000 0.00 0.00 40.58 4.55
2077 2954 0.179054 GGCTCCCCTATTGTTCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
2078 2955 0.539986 GCTCCCCTATTGTTCCGACA 59.460 55.000 0.00 0.00 0.00 4.35
2079 2956 1.141053 GCTCCCCTATTGTTCCGACAT 59.859 52.381 0.00 0.00 35.29 3.06
2080 2957 2.807108 GCTCCCCTATTGTTCCGACATC 60.807 54.545 0.00 0.00 35.29 3.06
2081 2958 2.434336 CTCCCCTATTGTTCCGACATCA 59.566 50.000 0.00 0.00 35.29 3.07
2082 2959 2.841266 TCCCCTATTGTTCCGACATCAA 59.159 45.455 0.00 0.00 35.29 2.57
2083 2960 3.264706 TCCCCTATTGTTCCGACATCAAA 59.735 43.478 0.00 0.00 35.29 2.69
2084 2961 4.013728 CCCCTATTGTTCCGACATCAAAA 58.986 43.478 0.00 0.00 35.29 2.44
2085 2962 4.461081 CCCCTATTGTTCCGACATCAAAAA 59.539 41.667 0.00 0.00 35.29 1.94
2163 3040 8.225603 ACAATTTACCAATTCAGTATAGGCTG 57.774 34.615 0.00 0.00 37.81 4.85
2179 3056 9.520515 AGTATAGGCTGATGTATTTTATTTGGG 57.479 33.333 0.00 0.00 0.00 4.12
2211 3088 5.414454 GGATAAGTTTGCATGTAAGTGGTGA 59.586 40.000 0.00 0.00 0.00 4.02
2219 3096 6.741992 TGCATGTAAGTGGTGAATAGAAAG 57.258 37.500 0.00 0.00 0.00 2.62
2272 3149 2.100916 CTCACGTAATGGTAGAGTGGGG 59.899 54.545 0.00 0.00 33.98 4.96
2273 3150 1.829222 CACGTAATGGTAGAGTGGGGT 59.171 52.381 0.00 0.00 0.00 4.95
2285 3162 0.704664 AGTGGGGTGATTTCCTTCCC 59.295 55.000 0.00 0.00 39.22 3.97
2319 3196 9.884465 AATGTAATTTATAATGAAGAGAAGCGC 57.116 29.630 0.00 0.00 26.74 5.92
2321 3198 9.056005 TGTAATTTATAATGAAGAGAAGCGCAT 57.944 29.630 11.47 0.00 0.00 4.73
2343 3220 8.327429 CGCATTGAAGAAAACAACAACTTATTT 58.673 29.630 0.00 0.00 0.00 1.40
2380 3257 5.068723 CGAATTCCTAACCAGGCTTAGTAGA 59.931 44.000 0.00 0.00 42.30 2.59
2408 3285 8.868522 AAATTAGACCACAATCATCTGAGAAA 57.131 30.769 0.00 0.00 0.00 2.52
2434 3311 6.950860 AAAAACTCCCACCAATCCATATTT 57.049 33.333 0.00 0.00 0.00 1.40
2435 3312 6.544928 AAAACTCCCACCAATCCATATTTC 57.455 37.500 0.00 0.00 0.00 2.17
2436 3313 5.472301 AACTCCCACCAATCCATATTTCT 57.528 39.130 0.00 0.00 0.00 2.52
2437 3314 5.472301 ACTCCCACCAATCCATATTTCTT 57.528 39.130 0.00 0.00 0.00 2.52
2438 3315 5.203528 ACTCCCACCAATCCATATTTCTTG 58.796 41.667 0.00 0.00 0.00 3.02
2439 3316 5.203528 CTCCCACCAATCCATATTTCTTGT 58.796 41.667 0.00 0.00 0.00 3.16
2440 3317 5.200483 TCCCACCAATCCATATTTCTTGTC 58.800 41.667 0.00 0.00 0.00 3.18
2441 3318 4.036734 CCCACCAATCCATATTTCTTGTCG 59.963 45.833 0.00 0.00 0.00 4.35
2442 3319 4.498009 CCACCAATCCATATTTCTTGTCGC 60.498 45.833 0.00 0.00 0.00 5.19
2443 3320 4.336433 CACCAATCCATATTTCTTGTCGCT 59.664 41.667 0.00 0.00 0.00 4.93
2444 3321 4.949856 ACCAATCCATATTTCTTGTCGCTT 59.050 37.500 0.00 0.00 0.00 4.68
2445 3322 6.038161 CACCAATCCATATTTCTTGTCGCTTA 59.962 38.462 0.00 0.00 0.00 3.09
2446 3323 6.038271 ACCAATCCATATTTCTTGTCGCTTAC 59.962 38.462 0.00 0.00 0.00 2.34
2447 3324 6.260936 CCAATCCATATTTCTTGTCGCTTACT 59.739 38.462 0.00 0.00 0.00 2.24
2448 3325 7.201732 CCAATCCATATTTCTTGTCGCTTACTT 60.202 37.037 0.00 0.00 0.00 2.24
2449 3326 6.903883 TCCATATTTCTTGTCGCTTACTTC 57.096 37.500 0.00 0.00 0.00 3.01
2450 3327 5.518847 TCCATATTTCTTGTCGCTTACTTCG 59.481 40.000 0.00 0.00 0.00 3.79
2451 3328 5.291128 CCATATTTCTTGTCGCTTACTTCGT 59.709 40.000 0.00 0.00 0.00 3.85
2452 3329 6.474427 CCATATTTCTTGTCGCTTACTTCGTA 59.526 38.462 0.00 0.00 0.00 3.43
2453 3330 7.169308 CCATATTTCTTGTCGCTTACTTCGTAT 59.831 37.037 0.00 0.00 0.00 3.06
2454 3331 6.963049 ATTTCTTGTCGCTTACTTCGTATT 57.037 33.333 0.00 0.00 0.00 1.89
2455 3332 9.740239 ATATTTCTTGTCGCTTACTTCGTATTA 57.260 29.630 0.00 0.00 0.00 0.98
2456 3333 7.872163 TTTCTTGTCGCTTACTTCGTATTAA 57.128 32.000 0.00 0.00 0.00 1.40
2457 3334 8.470040 TTTCTTGTCGCTTACTTCGTATTAAT 57.530 30.769 0.00 0.00 0.00 1.40
2458 3335 9.571810 TTTCTTGTCGCTTACTTCGTATTAATA 57.428 29.630 0.00 0.00 0.00 0.98
2459 3336 9.740239 TTCTTGTCGCTTACTTCGTATTAATAT 57.260 29.630 0.00 0.00 0.00 1.28
2463 3340 9.817365 TGTCGCTTACTTCGTATTAATATAGAC 57.183 33.333 0.00 0.00 0.00 2.59
2464 3341 9.271738 GTCGCTTACTTCGTATTAATATAGACC 57.728 37.037 0.00 0.00 0.00 3.85
2465 3342 8.171196 TCGCTTACTTCGTATTAATATAGACCG 58.829 37.037 0.00 0.00 0.00 4.79
2470 3347 5.824904 TCGTATTAATATAGACCGCCCTC 57.175 43.478 0.00 0.00 0.00 4.30
2476 3353 0.323178 TATAGACCGCCCTCCGATCC 60.323 60.000 0.00 0.00 40.02 3.36
2483 3360 1.762957 CCGCCCTCCGATCCATATTAT 59.237 52.381 0.00 0.00 40.02 1.28
2489 3366 4.870426 CCCTCCGATCCATATTATTTGTCG 59.130 45.833 0.00 0.00 0.00 4.35
2492 3369 5.547465 TCCGATCCATATTATTTGTCGCTT 58.453 37.500 0.00 0.00 0.00 4.68
2496 3373 7.411912 CCGATCCATATTATTTGTCGCTTACTG 60.412 40.741 0.00 0.00 0.00 2.74
2521 3398 7.502895 TGAGTATTAATATAGATCGGAGGGAGC 59.497 40.741 0.00 0.00 0.00 4.70
2524 3401 4.810191 AATATAGATCGGAGGGAGCAAC 57.190 45.455 0.00 0.00 32.03 4.17
2552 3429 3.370840 ACACATTAGGTCATGCCACAT 57.629 42.857 8.58 0.00 40.61 3.21
2559 3436 6.039717 ACATTAGGTCATGCCACATATTTCAC 59.960 38.462 8.58 0.00 40.61 3.18
2583 3461 7.707035 CACAGATCAAGGTGTAATACTTACTCC 59.293 40.741 9.16 9.16 45.56 3.85
2585 3463 6.901300 AGATCAAGGTGTAATACTTACTCCCA 59.099 38.462 12.25 1.61 46.08 4.37
2600 3478 7.189087 ACTTACTCCCACCATTCCAAAATAAT 58.811 34.615 0.00 0.00 0.00 1.28
2637 3515 6.122277 AGACTTCAAATGTTTGGAAGTCTCA 58.878 36.000 24.57 0.00 47.00 3.27
2641 3519 8.734386 ACTTCAAATGTTTGGAAGTCTCATATC 58.266 33.333 4.53 0.00 35.57 1.63
2652 3530 7.050377 TGGAAGTCTCATATCAATCTTCAACC 58.950 38.462 0.00 0.00 34.77 3.77
2669 3547 3.009033 TCAACCTTACACTTGCATAGGCT 59.991 43.478 0.00 0.00 41.91 4.58
2680 3558 7.056635 ACACTTGCATAGGCTAAGTATTTCAT 58.943 34.615 13.95 0.00 38.46 2.57
2681 3559 7.557719 ACACTTGCATAGGCTAAGTATTTCATT 59.442 33.333 13.95 0.00 38.46 2.57
2724 3602 9.710818 AAAATCTATACTCTGTTCCACTACCTA 57.289 33.333 0.00 0.00 0.00 3.08
2732 3610 8.012957 ACTCTGTTCCACTACCTATATTTCTG 57.987 38.462 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 1.065273 ACGCCATCTAGGTAACGCG 59.935 57.895 3.53 3.53 43.22 6.01
89 92 1.420138 AGAAGGAAACCATCACCACGT 59.580 47.619 0.00 0.00 0.00 4.49
110 113 4.157120 GGGACATCACCGACGGGG 62.157 72.222 20.00 15.80 43.62 5.73
119 122 0.331616 TCTCACGGAGAGGGACATCA 59.668 55.000 7.21 0.00 44.81 3.07
160 163 1.889573 GCTACCTTGATGGCTCGGC 60.890 63.158 0.00 0.00 40.22 5.54
275 278 2.736826 CCTCCCCTTCCCTCGCTTC 61.737 68.421 0.00 0.00 0.00 3.86
277 280 4.806339 CCCTCCCCTTCCCTCGCT 62.806 72.222 0.00 0.00 0.00 4.93
279 282 3.635869 TTCCCCTCCCCTTCCCTCG 62.636 68.421 0.00 0.00 0.00 4.63
280 283 1.694525 CTTCCCCTCCCCTTCCCTC 60.695 68.421 0.00 0.00 0.00 4.30
281 284 2.461637 CTTCCCCTCCCCTTCCCT 59.538 66.667 0.00 0.00 0.00 4.20
282 285 2.696504 CCTTCCCCTCCCCTTCCC 60.697 72.222 0.00 0.00 0.00 3.97
283 286 2.696504 CCCTTCCCCTCCCCTTCC 60.697 72.222 0.00 0.00 0.00 3.46
284 287 2.696504 CCCCTTCCCCTCCCCTTC 60.697 72.222 0.00 0.00 0.00 3.46
285 288 3.224269 TCCCCTTCCCCTCCCCTT 61.224 66.667 0.00 0.00 0.00 3.95
286 289 3.711782 CTCCCCTTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
287 290 4.845307 CCTCCCCTTCCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
290 293 4.760220 TGGCCTCCCCTTCCCCTC 62.760 72.222 3.32 0.00 0.00 4.30
291 294 4.058505 ATGGCCTCCCCTTCCCCT 62.059 66.667 3.32 0.00 0.00 4.79
292 295 3.825623 CATGGCCTCCCCTTCCCC 61.826 72.222 3.32 0.00 0.00 4.81
319 322 0.608640 GTCATGTCGTCCACCTCCTT 59.391 55.000 0.00 0.00 0.00 3.36
326 329 1.409064 GCATCTAGGTCATGTCGTCCA 59.591 52.381 0.00 0.00 0.00 4.02
370 373 1.760192 AGCCTCAATTCTCACATGGC 58.240 50.000 0.00 0.00 39.19 4.40
397 400 0.819259 GCATCCCTGCTTATCCGCAA 60.819 55.000 0.00 0.00 45.32 4.85
414 417 4.760878 TGCTCCTATAAAACACGTATGCA 58.239 39.130 0.00 0.00 0.00 3.96
446 451 1.803866 CCCTAACCTCCTAACCTCCC 58.196 60.000 0.00 0.00 0.00 4.30
531 551 4.201841 GCGTGTTGGTTGTAAGTTGTAACT 60.202 41.667 0.00 0.00 42.04 2.24
537 557 1.062880 CGTGCGTGTTGGTTGTAAGTT 59.937 47.619 0.00 0.00 0.00 2.66
538 558 0.653636 CGTGCGTGTTGGTTGTAAGT 59.346 50.000 0.00 0.00 0.00 2.24
539 559 0.656205 GCGTGCGTGTTGGTTGTAAG 60.656 55.000 0.00 0.00 0.00 2.34
547 576 0.735978 TAGAGATGGCGTGCGTGTTG 60.736 55.000 0.00 0.00 0.00 3.33
614 643 1.964373 CGGCCCAACAAACGCTAGT 60.964 57.895 0.00 0.00 0.00 2.57
615 644 1.964373 ACGGCCCAACAAACGCTAG 60.964 57.895 0.00 0.00 0.00 3.42
616 645 2.111460 ACGGCCCAACAAACGCTA 59.889 55.556 0.00 0.00 0.00 4.26
617 646 3.591835 CACGGCCCAACAAACGCT 61.592 61.111 0.00 0.00 0.00 5.07
618 647 4.639171 CCACGGCCCAACAAACGC 62.639 66.667 0.00 0.00 0.00 4.84
619 648 4.639171 GCCACGGCCCAACAAACG 62.639 66.667 0.00 0.00 34.56 3.60
683 712 0.895530 TCAAAATCGCCTCGTCTCCT 59.104 50.000 0.00 0.00 0.00 3.69
697 726 2.535012 GGGACGCCCAAATTTCAAAA 57.465 45.000 9.72 0.00 44.65 2.44
881 912 6.723298 TTTGCCTTTGTCTTTTGGAATAGA 57.277 33.333 0.00 0.00 0.00 1.98
886 917 5.115480 GTCATTTTGCCTTTGTCTTTTGGA 58.885 37.500 0.00 0.00 0.00 3.53
910 941 1.895798 TCTCAGCTCGTCAAAGTGGAT 59.104 47.619 0.00 0.00 0.00 3.41
1090 1130 1.215647 GGTCTTCCGTGATGAGCGT 59.784 57.895 4.23 0.00 0.00 5.07
1091 1131 0.526524 GAGGTCTTCCGTGATGAGCG 60.527 60.000 10.84 0.00 38.60 5.03
1351 1401 5.312120 TCCTACTTTTTGCAACAACGAAA 57.688 34.783 0.00 0.00 0.00 3.46
1390 1440 9.150348 CACACACGGCATAATGAGAATATATTA 57.850 33.333 0.00 0.00 0.00 0.98
1409 1466 1.512364 CAAACAATTCACGCACACACG 59.488 47.619 0.00 0.00 39.50 4.49
1410 1467 2.791567 TCAAACAATTCACGCACACAC 58.208 42.857 0.00 0.00 0.00 3.82
1485 1720 3.390639 CCTTAGCATCCTCCATGAGAACT 59.609 47.826 0.00 0.00 33.80 3.01
1510 1745 2.159099 GCATCTCCACAATCGTCAGGTA 60.159 50.000 0.00 0.00 0.00 3.08
1521 1756 0.035725 CCTTCAGCTGCATCTCCACA 60.036 55.000 9.47 0.00 0.00 4.17
1529 1764 0.837691 TCTCTTCCCCTTCAGCTGCA 60.838 55.000 9.47 0.00 0.00 4.41
1593 1828 2.740055 CAGTGGGACAGCACGCTC 60.740 66.667 0.00 0.00 41.80 5.03
1701 1936 0.742505 ACTCCGTGACAACTTCGTCA 59.257 50.000 0.00 0.00 43.54 4.35
1798 2033 5.718801 TTGGTGGCTAGATAATTGGGTAA 57.281 39.130 0.00 0.00 0.00 2.85
1848 2091 8.387015 ATATTCATGTAATACAACCCACGTGGG 61.387 40.741 45.07 45.07 45.57 4.61
1849 2092 3.601435 TCATGTAATACAACCCACGTGG 58.399 45.455 28.26 28.26 41.37 4.94
1851 2094 7.441157 CAGATATTCATGTAATACAACCCACGT 59.559 37.037 0.00 0.00 32.86 4.49
1852 2095 7.441157 ACAGATATTCATGTAATACAACCCACG 59.559 37.037 0.00 0.00 32.86 4.94
1925 2800 2.138596 AGCAAACCGAGCACAATTTG 57.861 45.000 0.00 0.00 35.57 2.32
1926 2801 2.888834 AAGCAAACCGAGCACAATTT 57.111 40.000 0.00 0.00 0.00 1.82
1927 2802 2.884639 ACTAAGCAAACCGAGCACAATT 59.115 40.909 0.00 0.00 0.00 2.32
1929 2804 1.961793 ACTAAGCAAACCGAGCACAA 58.038 45.000 0.00 0.00 0.00 3.33
1966 2843 6.546403 TGTACTTCCCGAGAGCATATATATCC 59.454 42.308 0.00 0.00 0.00 2.59
2020 2897 5.803020 AGCATCTTATGTCGAAAAGAACC 57.197 39.130 9.41 5.08 35.47 3.62
2029 2906 1.258982 GTCGGCAAGCATCTTATGTCG 59.741 52.381 0.00 0.00 43.07 4.35
2031 2908 2.401583 TGTCGGCAAGCATCTTATGT 57.598 45.000 0.00 0.00 0.00 2.29
2037 2914 1.202114 TCCAAAATGTCGGCAAGCATC 59.798 47.619 0.00 0.00 0.00 3.91
2038 2915 1.203052 CTCCAAAATGTCGGCAAGCAT 59.797 47.619 0.00 0.00 0.00 3.79
2039 2916 0.597568 CTCCAAAATGTCGGCAAGCA 59.402 50.000 0.00 0.00 0.00 3.91
2040 2917 0.109132 CCTCCAAAATGTCGGCAAGC 60.109 55.000 0.00 0.00 0.00 4.01
2041 2918 0.109132 GCCTCCAAAATGTCGGCAAG 60.109 55.000 0.00 0.00 40.41 4.01
2042 2919 0.539438 AGCCTCCAAAATGTCGGCAA 60.539 50.000 0.00 0.00 43.07 4.52
2043 2920 0.960364 GAGCCTCCAAAATGTCGGCA 60.960 55.000 0.00 0.00 43.07 5.69
2044 2921 1.657751 GGAGCCTCCAAAATGTCGGC 61.658 60.000 5.69 0.00 40.99 5.54
2045 2922 1.032114 GGGAGCCTCCAAAATGTCGG 61.032 60.000 13.90 0.00 38.64 4.79
2046 2923 1.032114 GGGGAGCCTCCAAAATGTCG 61.032 60.000 13.90 0.00 38.64 4.35
2047 2924 0.332972 AGGGGAGCCTCCAAAATGTC 59.667 55.000 13.90 0.00 38.64 3.06
2048 2925 1.681229 TAGGGGAGCCTCCAAAATGT 58.319 50.000 13.90 0.00 38.64 2.71
2049 2926 2.961062 CAATAGGGGAGCCTCCAAAATG 59.039 50.000 13.90 0.85 38.64 2.32
2050 2927 2.587307 ACAATAGGGGAGCCTCCAAAAT 59.413 45.455 13.90 0.00 38.64 1.82
2051 2928 2.000048 ACAATAGGGGAGCCTCCAAAA 59.000 47.619 13.90 0.00 38.64 2.44
2052 2929 1.681229 ACAATAGGGGAGCCTCCAAA 58.319 50.000 13.90 0.00 38.64 3.28
2053 2930 1.564348 GAACAATAGGGGAGCCTCCAA 59.436 52.381 13.90 0.00 38.64 3.53
2054 2931 1.213296 GAACAATAGGGGAGCCTCCA 58.787 55.000 13.90 0.00 38.64 3.86
2055 2932 0.474614 GGAACAATAGGGGAGCCTCC 59.525 60.000 0.73 0.73 35.23 4.30
2056 2933 0.106894 CGGAACAATAGGGGAGCCTC 59.893 60.000 0.00 0.00 0.00 4.70
2057 2934 0.326238 TCGGAACAATAGGGGAGCCT 60.326 55.000 0.00 0.00 0.00 4.58
2058 2935 0.179054 GTCGGAACAATAGGGGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
2059 2936 0.539986 TGTCGGAACAATAGGGGAGC 59.460 55.000 0.00 0.00 30.70 4.70
2060 2937 2.434336 TGATGTCGGAACAATAGGGGAG 59.566 50.000 0.00 0.00 39.30 4.30
2061 2938 2.473070 TGATGTCGGAACAATAGGGGA 58.527 47.619 0.00 0.00 39.30 4.81
2062 2939 3.275617 TTGATGTCGGAACAATAGGGG 57.724 47.619 0.00 0.00 39.30 4.79
2063 2940 5.637006 TTTTTGATGTCGGAACAATAGGG 57.363 39.130 0.00 0.00 39.30 3.53
2082 2959 6.706295 TGTTTGGTCAACATCTTTCCTTTTT 58.294 32.000 0.00 0.00 40.71 1.94
2083 2960 6.293004 TGTTTGGTCAACATCTTTCCTTTT 57.707 33.333 0.00 0.00 40.71 2.27
2084 2961 5.930837 TGTTTGGTCAACATCTTTCCTTT 57.069 34.783 0.00 0.00 40.71 3.11
2085 2962 5.930837 TTGTTTGGTCAACATCTTTCCTT 57.069 34.783 0.00 0.00 45.17 3.36
2086 2963 5.930837 TTTGTTTGGTCAACATCTTTCCT 57.069 34.783 0.00 0.00 45.17 3.36
2087 2964 6.106003 ACTTTTGTTTGGTCAACATCTTTCC 58.894 36.000 0.00 0.00 45.17 3.13
2088 2965 8.755018 CATACTTTTGTTTGGTCAACATCTTTC 58.245 33.333 0.00 0.00 45.17 2.62
2089 2966 7.224557 GCATACTTTTGTTTGGTCAACATCTTT 59.775 33.333 0.00 0.00 45.17 2.52
2090 2967 6.701400 GCATACTTTTGTTTGGTCAACATCTT 59.299 34.615 0.00 0.00 45.17 2.40
2091 2968 6.183360 TGCATACTTTTGTTTGGTCAACATCT 60.183 34.615 0.00 0.00 45.17 2.90
2092 2969 5.982516 TGCATACTTTTGTTTGGTCAACATC 59.017 36.000 0.00 0.00 45.17 3.06
2093 2970 5.911752 TGCATACTTTTGTTTGGTCAACAT 58.088 33.333 0.00 0.00 45.17 2.71
2094 2971 5.330455 TGCATACTTTTGTTTGGTCAACA 57.670 34.783 0.00 0.00 44.11 3.33
2095 2972 6.456315 GGTTTGCATACTTTTGTTTGGTCAAC 60.456 38.462 7.25 0.00 33.02 3.18
2139 3016 8.450578 TCAGCCTATACTGAATTGGTAAATTG 57.549 34.615 0.00 0.00 43.59 2.32
2154 3031 9.297037 ACCCAAATAAAATACATCAGCCTATAC 57.703 33.333 0.00 0.00 0.00 1.47
2179 3056 9.669353 CTTACATGCAAACTTATCCAATATGAC 57.331 33.333 0.00 0.00 0.00 3.06
2186 3063 5.182950 CACCACTTACATGCAAACTTATCCA 59.817 40.000 0.00 0.00 0.00 3.41
2188 3065 6.494893 TCACCACTTACATGCAAACTTATC 57.505 37.500 0.00 0.00 0.00 1.75
2190 3067 6.892658 ATTCACCACTTACATGCAAACTTA 57.107 33.333 0.00 0.00 0.00 2.24
2193 3070 6.494893 TCTATTCACCACTTACATGCAAAC 57.505 37.500 0.00 0.00 0.00 2.93
2197 3074 5.123820 TGCTTTCTATTCACCACTTACATGC 59.876 40.000 0.00 0.00 0.00 4.06
2211 3088 7.765360 CAGAGATTCAGAGAAGTGCTTTCTATT 59.235 37.037 4.38 0.00 46.12 1.73
2219 3096 6.393990 TCTTTACAGAGATTCAGAGAAGTGC 58.606 40.000 0.00 0.00 0.00 4.40
2256 3133 4.772886 AATCACCCCACTCTACCATTAC 57.227 45.455 0.00 0.00 0.00 1.89
2272 3149 3.486383 TGTTGTGAGGGAAGGAAATCAC 58.514 45.455 0.00 0.00 41.89 3.06
2273 3150 3.874383 TGTTGTGAGGGAAGGAAATCA 57.126 42.857 0.00 0.00 0.00 2.57
2414 3291 5.472301 AGAAATATGGATTGGTGGGAGTT 57.528 39.130 0.00 0.00 0.00 3.01
2415 3292 5.203528 CAAGAAATATGGATTGGTGGGAGT 58.796 41.667 0.00 0.00 0.00 3.85
2416 3293 5.203528 ACAAGAAATATGGATTGGTGGGAG 58.796 41.667 0.00 0.00 0.00 4.30
2418 3295 4.036734 CGACAAGAAATATGGATTGGTGGG 59.963 45.833 0.00 0.00 0.00 4.61
2420 3297 4.336433 AGCGACAAGAAATATGGATTGGTG 59.664 41.667 0.00 0.00 0.00 4.17
2421 3298 4.526970 AGCGACAAGAAATATGGATTGGT 58.473 39.130 0.00 0.00 0.00 3.67
2422 3299 5.505173 AAGCGACAAGAAATATGGATTGG 57.495 39.130 0.00 0.00 0.00 3.16
2423 3300 7.251704 AGTAAGCGACAAGAAATATGGATTG 57.748 36.000 0.00 0.00 0.00 2.67
2424 3301 7.254455 CGAAGTAAGCGACAAGAAATATGGATT 60.254 37.037 0.00 0.00 0.00 3.01
2425 3302 6.201044 CGAAGTAAGCGACAAGAAATATGGAT 59.799 38.462 0.00 0.00 0.00 3.41
2426 3303 5.518847 CGAAGTAAGCGACAAGAAATATGGA 59.481 40.000 0.00 0.00 0.00 3.41
2427 3304 5.291128 ACGAAGTAAGCGACAAGAAATATGG 59.709 40.000 0.00 0.00 41.94 2.74
2428 3305 6.332504 ACGAAGTAAGCGACAAGAAATATG 57.667 37.500 0.00 0.00 41.94 1.78
2446 3323 6.205101 AGGGCGGTCTATATTAATACGAAG 57.795 41.667 0.00 0.00 0.00 3.79
2447 3324 5.126061 GGAGGGCGGTCTATATTAATACGAA 59.874 44.000 0.00 0.00 0.00 3.85
2448 3325 4.641989 GGAGGGCGGTCTATATTAATACGA 59.358 45.833 0.00 0.00 0.00 3.43
2449 3326 4.497006 CGGAGGGCGGTCTATATTAATACG 60.497 50.000 0.00 0.00 0.00 3.06
2450 3327 4.641989 TCGGAGGGCGGTCTATATTAATAC 59.358 45.833 0.00 0.00 0.00 1.89
2451 3328 4.858850 TCGGAGGGCGGTCTATATTAATA 58.141 43.478 0.00 0.00 0.00 0.98
2452 3329 3.705051 TCGGAGGGCGGTCTATATTAAT 58.295 45.455 0.00 0.00 0.00 1.40
2453 3330 3.159213 TCGGAGGGCGGTCTATATTAA 57.841 47.619 0.00 0.00 0.00 1.40
2454 3331 2.885135 TCGGAGGGCGGTCTATATTA 57.115 50.000 0.00 0.00 0.00 0.98
2455 3332 2.100989 GATCGGAGGGCGGTCTATATT 58.899 52.381 0.00 0.00 0.00 1.28
2456 3333 1.685491 GGATCGGAGGGCGGTCTATAT 60.685 57.143 0.00 0.00 0.00 0.86
2457 3334 0.323178 GGATCGGAGGGCGGTCTATA 60.323 60.000 0.00 0.00 0.00 1.31
2458 3335 1.606889 GGATCGGAGGGCGGTCTAT 60.607 63.158 0.00 0.00 0.00 1.98
2459 3336 2.203451 GGATCGGAGGGCGGTCTA 60.203 66.667 0.00 0.00 0.00 2.59
2460 3337 2.367586 TATGGATCGGAGGGCGGTCT 62.368 60.000 0.00 0.00 0.00 3.85
2461 3338 1.258445 ATATGGATCGGAGGGCGGTC 61.258 60.000 0.00 0.00 0.00 4.79
2462 3339 0.836400 AATATGGATCGGAGGGCGGT 60.836 55.000 0.00 0.00 0.00 5.68
2463 3340 1.191535 TAATATGGATCGGAGGGCGG 58.808 55.000 0.00 0.00 0.00 6.13
2464 3341 3.543680 AATAATATGGATCGGAGGGCG 57.456 47.619 0.00 0.00 0.00 6.13
2465 3342 4.589908 ACAAATAATATGGATCGGAGGGC 58.410 43.478 0.00 0.00 0.00 5.19
2470 3347 5.862924 AAGCGACAAATAATATGGATCGG 57.137 39.130 0.00 0.00 0.00 4.18
2492 3369 9.848710 CCCTCCGATCTATATTAATACTCAGTA 57.151 37.037 0.00 0.00 0.00 2.74
2496 3373 7.502895 TGCTCCCTCCGATCTATATTAATACTC 59.497 40.741 0.00 0.00 0.00 2.59
2532 3409 2.877097 TGTGGCATGACCTAATGTGT 57.123 45.000 0.00 0.00 40.22 3.72
2536 3413 6.128486 TGTGAAATATGTGGCATGACCTAAT 58.872 36.000 0.00 0.00 40.22 1.73
2542 3419 5.438833 TGATCTGTGAAATATGTGGCATGA 58.561 37.500 0.00 0.00 0.00 3.07
2546 3423 4.641989 ACCTTGATCTGTGAAATATGTGGC 59.358 41.667 0.00 0.00 0.00 5.01
2547 3424 5.649395 ACACCTTGATCTGTGAAATATGTGG 59.351 40.000 14.68 0.00 36.35 4.17
2583 3461 5.576384 CACGACAATTATTTTGGAATGGTGG 59.424 40.000 0.00 0.00 0.00 4.61
2585 3463 5.719173 CCACGACAATTATTTTGGAATGGT 58.281 37.500 0.00 0.00 0.00 3.55
2600 3478 1.138069 TGAAGTCTTCTGCCACGACAA 59.862 47.619 13.67 0.00 0.00 3.18
2637 3515 7.611467 TGCAAGTGTAAGGTTGAAGATTGATAT 59.389 33.333 0.00 0.00 0.00 1.63
2641 3519 5.437289 TGCAAGTGTAAGGTTGAAGATTG 57.563 39.130 0.00 0.00 0.00 2.67
2652 3530 8.438676 AAATACTTAGCCTATGCAAGTGTAAG 57.561 34.615 13.78 0.00 38.45 2.34
2699 3577 9.884814 ATAGGTAGTGGAACAGAGTATAGATTT 57.115 33.333 0.00 0.00 41.80 2.17
2712 3590 7.859325 TTTGCAGAAATATAGGTAGTGGAAC 57.141 36.000 0.00 0.00 0.00 3.62
2789 3667 5.596836 ACATGTGTGTTGACCTGAAATTT 57.403 34.783 0.00 0.00 34.01 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.