Multiple sequence alignment - TraesCS3B01G535500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G535500 chr3B 100.000 4041 0 0 1 4041 775479966 775484006 0.000000e+00 7463.0
1 TraesCS3B01G535500 chr3B 85.651 1129 152 8 428 1551 674485766 674484643 0.000000e+00 1179.0
2 TraesCS3B01G535500 chr3B 93.788 660 35 3 2571 3227 101366186 101366842 0.000000e+00 987.0
3 TraesCS3B01G535500 chr3B 94.786 537 23 2 3423 3959 802303118 802302587 0.000000e+00 832.0
4 TraesCS3B01G535500 chr3B 95.152 165 8 0 2411 2575 253630644 253630480 1.110000e-65 261.0
5 TraesCS3B01G535500 chr3B 89.706 136 9 2 1766 1897 674483543 674483409 6.950000e-38 169.0
6 TraesCS3B01G535500 chr3B 91.803 61 5 0 2353 2413 101366129 101366189 7.200000e-13 86.1
7 TraesCS3B01G535500 chr7D 95.846 1613 56 8 1 1605 500905898 500904289 0.000000e+00 2597.0
8 TraesCS3B01G535500 chr7D 96.988 830 17 2 3212 4041 500902966 500902145 0.000000e+00 1387.0
9 TraesCS3B01G535500 chr7D 97.121 660 15 3 2571 3227 500903648 500902990 0.000000e+00 1110.0
10 TraesCS3B01G535500 chr7D 97.222 648 17 1 1766 2413 500904291 500903645 0.000000e+00 1096.0
11 TraesCS3B01G535500 chr7D 94.697 660 29 3 2571 3227 244778887 244779543 0.000000e+00 1020.0
12 TraesCS3B01G535500 chr7D 95.175 601 22 5 3378 3978 162123280 162123873 0.000000e+00 942.0
13 TraesCS3B01G535500 chr7D 95.008 601 23 5 3378 3978 244782218 244782811 0.000000e+00 937.0
14 TraesCS3B01G535500 chr7D 98.870 177 2 0 3212 3388 162120633 162120809 2.340000e-82 316.0
15 TraesCS3B01G535500 chr7D 98.870 177 2 0 3212 3388 244779568 244779744 2.340000e-82 316.0
16 TraesCS3B01G535500 chr5D 95.652 1610 62 4 1 1605 548204461 548206067 0.000000e+00 2579.0
17 TraesCS3B01G535500 chr5D 95.409 1285 49 4 326 1605 425666625 425667904 0.000000e+00 2037.0
18 TraesCS3B01G535500 chr5D 96.627 830 19 3 3212 4041 425669230 425670050 0.000000e+00 1369.0
19 TraesCS3B01G535500 chr5D 95.238 798 16 3 3212 4002 548207393 548208175 0.000000e+00 1243.0
20 TraesCS3B01G535500 chr5D 97.685 648 15 0 1766 2413 548206065 548206712 0.000000e+00 1114.0
21 TraesCS3B01G535500 chr5D 96.970 660 17 2 2571 3227 548206709 548207368 0.000000e+00 1105.0
22 TraesCS3B01G535500 chr5D 97.068 648 19 0 1766 2413 425667902 425668549 0.000000e+00 1092.0
23 TraesCS3B01G535500 chr5D 96.515 660 20 2 2571 3227 425668546 425669205 0.000000e+00 1088.0
24 TraesCS3B01G535500 chr5D 94.394 660 31 3 2571 3227 69524848 69524192 0.000000e+00 1009.0
25 TraesCS3B01G535500 chr5D 93.972 564 25 5 3378 3941 69521526 69520972 0.000000e+00 845.0
26 TraesCS3B01G535500 chr5D 78.338 1191 152 58 10 1134 472276494 472275344 0.000000e+00 673.0
27 TraesCS3B01G535500 chr5D 98.851 174 2 0 3212 3385 514415917 514415744 1.090000e-80 311.0
28 TraesCS3B01G535500 chr5D 97.093 172 4 1 1600 1771 97586004 97585834 5.110000e-74 289.0
29 TraesCS3B01G535500 chr5D 96.000 175 5 2 1602 1775 66671949 66671776 2.380000e-72 283.0
30 TraesCS3B01G535500 chr5D 94.611 167 9 0 2412 2578 60140927 60140761 4.010000e-65 259.0
31 TraesCS3B01G535500 chr5D 94.012 167 10 0 2411 2577 498721906 498722072 1.860000e-63 254.0
32 TraesCS3B01G535500 chr5D 92.614 176 12 1 2407 2582 498492347 498492521 6.700000e-63 252.0
33 TraesCS3B01G535500 chr5D 89.362 47 3 2 2327 2372 69524580 69524535 1.570000e-04 58.4
34 TraesCS3B01G535500 chr3A 94.265 1552 67 7 1 1546 647362199 647363734 0.000000e+00 2353.0
35 TraesCS3B01G535500 chr3A 96.914 648 19 1 1766 2413 647363768 647364414 0.000000e+00 1085.0
36 TraesCS3B01G535500 chr3A 95.109 184 9 0 2230 2413 662882607 662882424 1.420000e-74 291.0
37 TraesCS3B01G535500 chr3A 100.000 38 0 0 1568 1605 647363733 647363770 2.010000e-08 71.3
38 TraesCS3B01G535500 chr4D 96.296 1323 41 3 288 1605 418533811 418532492 0.000000e+00 2165.0
39 TraesCS3B01G535500 chr4D 97.108 830 20 1 3212 4041 418531160 418530335 0.000000e+00 1397.0
40 TraesCS3B01G535500 chr4D 96.914 648 19 1 1766 2413 418532494 418531848 0.000000e+00 1085.0
41 TraesCS3B01G535500 chr4D 94.697 660 29 3 2571 3227 220918883 220919539 0.000000e+00 1020.0
42 TraesCS3B01G535500 chr4D 93.468 643 36 4 3378 4020 220922218 220922854 0.000000e+00 950.0
43 TraesCS3B01G535500 chr4D 95.608 296 8 1 1 296 418535221 418534931 1.700000e-128 470.0
44 TraesCS3B01G535500 chr4D 99.435 177 1 0 3212 3388 220919569 220919745 5.040000e-84 322.0
45 TraesCS3B01G535500 chr4D 94.944 178 8 1 1590 1767 477898783 477898959 1.110000e-70 278.0
46 TraesCS3B01G535500 chr4D 92.000 175 14 0 2412 2586 468208644 468208818 3.120000e-61 246.0
47 TraesCS3B01G535500 chr4D 100.000 31 0 0 2327 2357 220919151 220919181 1.570000e-04 58.4
48 TraesCS3B01G535500 chr7A 94.894 1273 55 5 1 1268 686149192 686147925 0.000000e+00 1982.0
49 TraesCS3B01G535500 chr7A 97.005 434 10 2 1766 2197 686143243 686142811 0.000000e+00 726.0
50 TraesCS3B01G535500 chr7A 95.699 279 11 1 1269 1546 686143555 686143277 7.970000e-122 448.0
51 TraesCS3B01G535500 chr7A 95.580 181 8 0 2233 2413 686142606 686142426 1.420000e-74 291.0
52 TraesCS3B01G535500 chr7A 98.413 63 1 0 1543 1605 686143303 686143241 1.190000e-20 111.0
53 TraesCS3B01G535500 chr7A 97.222 36 0 1 2211 2246 686142815 686142781 4.360000e-05 60.2
54 TraesCS3B01G535500 chr6B 87.511 1129 131 5 428 1551 55200773 55201896 0.000000e+00 1295.0
55 TraesCS3B01G535500 chr6B 97.619 168 4 0 1600 1767 226362647 226362480 5.110000e-74 289.0
56 TraesCS3B01G535500 chr6B 90.441 136 8 2 1766 1897 55201962 55202096 1.490000e-39 174.0
57 TraesCS3B01G535500 chr5B 80.991 1615 205 60 10 1552 578592169 578590585 0.000000e+00 1188.0
58 TraesCS3B01G535500 chr5B 89.147 129 14 0 1907 2035 391869146 391869274 1.160000e-35 161.0
59 TraesCS3B01G535500 chr5A 79.640 1611 212 61 10 1552 591465605 591464043 0.000000e+00 1051.0
60 TraesCS3B01G535500 chr2D 94.545 660 30 3 2571 3227 35973713 35973057 0.000000e+00 1014.0
61 TraesCS3B01G535500 chr2D 99.435 177 1 0 3212 3388 35973032 35972856 5.040000e-84 322.0
62 TraesCS3B01G535500 chr2D 97.619 168 4 0 1603 1770 632423584 632423751 5.110000e-74 289.0
63 TraesCS3B01G535500 chr2D 97.590 166 3 1 1602 1767 620615645 620615809 2.380000e-72 283.0
64 TraesCS3B01G535500 chr2A 94.436 647 30 3 2571 3214 427515300 427515943 0.000000e+00 990.0
65 TraesCS3B01G535500 chr6A 94.681 188 6 3 1602 1788 98747563 98747379 5.110000e-74 289.0
66 TraesCS3B01G535500 chr7B 97.024 168 5 0 1602 1769 185622895 185623062 2.380000e-72 283.0
67 TraesCS3B01G535500 chr1A 95.455 176 6 2 1597 1771 494815409 494815583 3.080000e-71 279.0
68 TraesCS3B01G535500 chr6D 94.611 167 9 0 2410 2576 90890280 90890446 4.010000e-65 259.0
69 TraesCS3B01G535500 chr4B 93.605 172 11 0 2406 2577 448896045 448896216 1.440000e-64 257.0
70 TraesCS3B01G535500 chrUn 94.545 165 9 0 2412 2576 243337286 243337450 5.180000e-64 255.0
71 TraesCS3B01G535500 chrUn 94.545 165 9 0 2412 2576 248708691 248708855 5.180000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G535500 chr3B 775479966 775484006 4040 False 7463.000000 7463 100.000000 1 4041 1 chr3B.!!$F1 4040
1 TraesCS3B01G535500 chr3B 802302587 802303118 531 True 832.000000 832 94.786000 3423 3959 1 chr3B.!!$R2 536
2 TraesCS3B01G535500 chr3B 674483409 674485766 2357 True 674.000000 1179 87.678500 428 1897 2 chr3B.!!$R3 1469
3 TraesCS3B01G535500 chr3B 101366129 101366842 713 False 536.550000 987 92.795500 2353 3227 2 chr3B.!!$F2 874
4 TraesCS3B01G535500 chr7D 500902145 500905898 3753 True 1547.500000 2597 96.794250 1 4041 4 chr7D.!!$R1 4040
5 TraesCS3B01G535500 chr7D 244778887 244782811 3924 False 757.666667 1020 96.191667 2571 3978 3 chr7D.!!$F2 1407
6 TraesCS3B01G535500 chr7D 162120633 162123873 3240 False 629.000000 942 97.022500 3212 3978 2 chr7D.!!$F1 766
7 TraesCS3B01G535500 chr5D 548204461 548208175 3714 False 1510.250000 2579 96.386250 1 4002 4 chr5D.!!$F4 4001
8 TraesCS3B01G535500 chr5D 425666625 425670050 3425 False 1396.500000 2037 96.404750 326 4041 4 chr5D.!!$F3 3715
9 TraesCS3B01G535500 chr5D 472275344 472276494 1150 True 673.000000 673 78.338000 10 1134 1 chr5D.!!$R4 1124
10 TraesCS3B01G535500 chr5D 69520972 69524848 3876 True 637.466667 1009 92.576000 2327 3941 3 chr5D.!!$R6 1614
11 TraesCS3B01G535500 chr3A 647362199 647364414 2215 False 1169.766667 2353 97.059667 1 2413 3 chr3A.!!$F1 2412
12 TraesCS3B01G535500 chr4D 418530335 418535221 4886 True 1279.250000 2165 96.481500 1 4041 4 chr4D.!!$R1 4040
13 TraesCS3B01G535500 chr4D 220918883 220922854 3971 False 587.600000 1020 96.900000 2327 4020 4 chr4D.!!$F3 1693
14 TraesCS3B01G535500 chr7A 686147925 686149192 1267 True 1982.000000 1982 94.894000 1 1268 1 chr7A.!!$R1 1267
15 TraesCS3B01G535500 chr7A 686142426 686143555 1129 True 327.240000 726 96.783800 1269 2413 5 chr7A.!!$R2 1144
16 TraesCS3B01G535500 chr6B 55200773 55202096 1323 False 734.500000 1295 88.976000 428 1897 2 chr6B.!!$F1 1469
17 TraesCS3B01G535500 chr5B 578590585 578592169 1584 True 1188.000000 1188 80.991000 10 1552 1 chr5B.!!$R1 1542
18 TraesCS3B01G535500 chr5A 591464043 591465605 1562 True 1051.000000 1051 79.640000 10 1552 1 chr5A.!!$R1 1542
19 TraesCS3B01G535500 chr2D 35972856 35973713 857 True 668.000000 1014 96.990000 2571 3388 2 chr2D.!!$R1 817
20 TraesCS3B01G535500 chr2A 427515300 427515943 643 False 990.000000 990 94.436000 2571 3214 1 chr2A.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 235 0.397941 CCTGGAGTGCAGTTTCAGGA 59.602 55.000 27.45 0.00 45.66 3.86 F
1053 2307 0.597637 CGCTCCCGTCGCTGAATAAT 60.598 55.000 0.00 0.00 0.00 1.28 F
1056 2310 1.068588 CTCCCGTCGCTGAATAATCCA 59.931 52.381 0.00 0.00 0.00 3.41 F
2750 5288 1.222113 GGGCTCCTGTACAGCTTCC 59.778 63.158 17.86 15.41 37.05 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 4309 0.261991 AGGATCTGAACCTCGGGCTA 59.738 55.000 0.00 0.0 31.43 3.93 R
2969 5509 0.613777 GTCAGGGTCAGACCGGAATT 59.386 55.000 9.46 0.0 39.83 2.17 R
2980 5520 2.675317 GCATATCCGCATAGTCAGGGTC 60.675 54.545 0.00 0.0 0.00 4.46 R
3994 9101 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.161189 TGTTTGTTTGCCTCATTTTCTCCA 59.839 37.500 0.00 0.00 0.00 3.86
124 136 2.237143 CCTTCAGCATGTTGGGAGACTA 59.763 50.000 9.87 0.00 37.40 2.59
200 216 1.750399 CCGGTTTCTCATGCCCTGG 60.750 63.158 0.00 0.00 0.00 4.45
215 235 0.397941 CCTGGAGTGCAGTTTCAGGA 59.602 55.000 27.45 0.00 45.66 3.86
304 1452 3.737172 GTCGCTGGCGGCACAAAT 61.737 61.111 19.92 0.00 44.22 2.32
400 1608 1.040646 AAGCGAAGATCCGGATGCTA 58.959 50.000 24.82 0.00 31.41 3.49
507 1724 3.954904 GCTACAAGGTCTAGAGGATGTCA 59.045 47.826 7.33 0.00 0.00 3.58
616 1834 4.271696 TGACCGAAATGAGTGAGTCAAT 57.728 40.909 0.00 0.00 39.19 2.57
649 1867 7.124298 ACTTTCATCTACTTATCCAGCAGTACA 59.876 37.037 0.00 0.00 0.00 2.90
719 1938 2.159099 ACGATAAATTCAGCTGGCTCGA 60.159 45.455 15.13 0.00 0.00 4.04
806 2036 3.695606 GCTGCTGGTCGGTCCTCA 61.696 66.667 0.00 0.00 37.07 3.86
912 2150 4.637534 CCACTGTGTATTTCTTCAGGATGG 59.362 45.833 7.08 0.00 36.16 3.51
917 2155 5.128919 GTGTATTTCTTCAGGATGGCTGAT 58.871 41.667 0.00 0.00 36.16 2.90
948 2187 5.885230 TCGAAATTGATTGCAGAGACAAT 57.115 34.783 0.00 0.00 42.88 2.71
957 2196 6.656902 TGATTGCAGAGACAATAGGAAATCT 58.343 36.000 0.00 0.00 40.31 2.40
1051 2305 2.411701 CGCTCCCGTCGCTGAATA 59.588 61.111 0.00 0.00 0.00 1.75
1052 2306 1.226859 CGCTCCCGTCGCTGAATAA 60.227 57.895 0.00 0.00 0.00 1.40
1053 2307 0.597637 CGCTCCCGTCGCTGAATAAT 60.598 55.000 0.00 0.00 0.00 1.28
1056 2310 1.068588 CTCCCGTCGCTGAATAATCCA 59.931 52.381 0.00 0.00 0.00 3.41
1073 2327 1.630369 TCCACATGACTCCTTCCCTTG 59.370 52.381 0.00 0.00 0.00 3.61
1095 2349 2.224079 GCTTCTCATTGTGAGCGTTCAA 59.776 45.455 2.60 0.00 43.95 2.69
1418 2706 5.159209 GCCTGAACAAATTTCTGATGAGTG 58.841 41.667 0.00 0.00 0.00 3.51
1605 3941 6.544564 GTCTAGATCCTAGCACAAGTTCTACT 59.455 42.308 0.00 0.00 0.00 2.57
1606 3942 5.845391 AGATCCTAGCACAAGTTCTACTC 57.155 43.478 0.00 0.00 0.00 2.59
1607 3943 4.647399 AGATCCTAGCACAAGTTCTACTCC 59.353 45.833 0.00 0.00 0.00 3.85
1608 3944 3.097614 TCCTAGCACAAGTTCTACTCCC 58.902 50.000 0.00 0.00 0.00 4.30
1609 3945 3.100671 CCTAGCACAAGTTCTACTCCCT 58.899 50.000 0.00 0.00 0.00 4.20
1610 3946 3.131400 CCTAGCACAAGTTCTACTCCCTC 59.869 52.174 0.00 0.00 0.00 4.30
1611 3947 1.903183 AGCACAAGTTCTACTCCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
1612 3948 1.404315 GCACAAGTTCTACTCCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
1613 3949 1.893801 CACAAGTTCTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
1614 3950 2.299297 CACAAGTTCTACTCCCTCCGTT 59.701 50.000 0.00 0.00 0.00 4.44
1615 3951 2.561858 ACAAGTTCTACTCCCTCCGTTC 59.438 50.000 0.00 0.00 0.00 3.95
1616 3952 1.849977 AGTTCTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
1617 3953 1.358445 AGTTCTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
1618 3954 2.579860 AGTTCTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
1619 3955 3.011032 AGTTCTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
1620 3956 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1621 3957 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1622 3958 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1623 3959 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1624 3960 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
1625 3961 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1626 3962 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1627 3963 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1628 3964 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1629 3965 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1630 3966 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1631 3967 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1632 3968 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1633 3969 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1634 3970 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1635 3971 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1636 3972 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1652 3988 8.142994 TCTTTCTAGACATTTCAACAAGTGAC 57.857 34.615 0.00 0.00 35.39 3.67
1653 3989 7.987458 TCTTTCTAGACATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
1654 3990 9.261180 CTTTCTAGACATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
1655 3991 8.589335 TTCTAGACATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
1656 3992 7.722363 TCTAGACATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 35.39 2.74
1657 3993 8.367911 TCTAGACATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 35.39 2.29
1658 3994 9.639601 CTAGACATTTCAACAAGTGACTACATA 57.360 33.333 0.00 0.00 35.39 2.29
1659 3995 8.311650 AGACATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
1660 3996 7.116376 AGACATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
1661 3997 6.147164 ACATTTCAACAAGTGACTACATACGG 59.853 38.462 0.00 0.00 35.39 4.02
1662 3998 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1663 3999 4.801891 TCAACAAGTGACTACATACGGAC 58.198 43.478 0.00 0.00 0.00 4.79
1664 4000 3.863142 ACAAGTGACTACATACGGACC 57.137 47.619 0.00 0.00 0.00 4.46
1665 4001 3.159472 ACAAGTGACTACATACGGACCA 58.841 45.455 0.00 0.00 0.00 4.02
1666 4002 3.575256 ACAAGTGACTACATACGGACCAA 59.425 43.478 0.00 0.00 0.00 3.67
1667 4003 4.039488 ACAAGTGACTACATACGGACCAAA 59.961 41.667 0.00 0.00 0.00 3.28
1668 4004 4.877378 AGTGACTACATACGGACCAAAA 57.123 40.909 0.00 0.00 0.00 2.44
1669 4005 5.416271 AGTGACTACATACGGACCAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
1670 4006 5.175859 AGTGACTACATACGGACCAAAATG 58.824 41.667 0.00 0.00 0.00 2.32
1671 4007 5.046878 AGTGACTACATACGGACCAAAATGA 60.047 40.000 5.05 0.00 0.00 2.57
1672 4008 5.291128 GTGACTACATACGGACCAAAATGAG 59.709 44.000 5.05 2.14 0.00 2.90
1673 4009 5.046878 TGACTACATACGGACCAAAATGAGT 60.047 40.000 5.05 4.53 0.00 3.41
1674 4010 5.175859 ACTACATACGGACCAAAATGAGTG 58.824 41.667 5.05 0.00 0.00 3.51
1675 4011 4.280436 ACATACGGACCAAAATGAGTGA 57.720 40.909 5.05 0.00 0.00 3.41
1676 4012 4.647611 ACATACGGACCAAAATGAGTGAA 58.352 39.130 5.05 0.00 0.00 3.18
1677 4013 5.253330 ACATACGGACCAAAATGAGTGAAT 58.747 37.500 5.05 0.00 0.00 2.57
1678 4014 5.354234 ACATACGGACCAAAATGAGTGAATC 59.646 40.000 5.05 0.00 0.00 2.52
1679 4015 4.021102 ACGGACCAAAATGAGTGAATCT 57.979 40.909 0.00 0.00 0.00 2.40
1680 4016 5.160607 ACGGACCAAAATGAGTGAATCTA 57.839 39.130 0.00 0.00 0.00 1.98
1681 4017 4.935808 ACGGACCAAAATGAGTGAATCTAC 59.064 41.667 0.00 0.00 0.00 2.59
1682 4018 4.935205 CGGACCAAAATGAGTGAATCTACA 59.065 41.667 0.00 0.00 0.00 2.74
1683 4019 5.163854 CGGACCAAAATGAGTGAATCTACAC 60.164 44.000 0.00 0.00 40.60 2.90
1716 4052 7.956328 ATGTCTACATATATCCGTATGTGGT 57.044 36.000 9.21 0.00 43.27 4.16
1718 4054 8.502105 TGTCTACATATATCCGTATGTGGTAG 57.498 38.462 9.21 0.00 43.27 3.18
1719 4055 8.105197 TGTCTACATATATCCGTATGTGGTAGT 58.895 37.037 9.21 0.00 43.27 2.73
1720 4056 8.610896 GTCTACATATATCCGTATGTGGTAGTC 58.389 40.741 9.21 0.00 43.27 2.59
1721 4057 6.770746 ACATATATCCGTATGTGGTAGTCC 57.229 41.667 0.00 0.00 42.20 3.85
1722 4058 6.250711 ACATATATCCGTATGTGGTAGTCCA 58.749 40.000 0.00 0.00 42.20 4.02
1723 4059 6.895756 ACATATATCCGTATGTGGTAGTCCAT 59.104 38.462 0.00 0.00 46.20 3.41
1724 4060 7.399191 ACATATATCCGTATGTGGTAGTCCATT 59.601 37.037 0.00 0.00 46.20 3.16
1725 4061 6.681729 ATATCCGTATGTGGTAGTCCATTT 57.318 37.500 0.00 0.00 46.20 2.32
1726 4062 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
1727 4063 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
1728 4064 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
1729 4065 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
1730 4066 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
1731 4067 6.458206 CCGTATGTGGTAGTCCATTTGAAATG 60.458 42.308 10.84 10.84 46.20 2.32
1732 4068 6.093495 CGTATGTGGTAGTCCATTTGAAATGT 59.907 38.462 15.93 1.43 46.20 2.71
1733 4069 5.957842 TGTGGTAGTCCATTTGAAATGTC 57.042 39.130 15.93 9.10 46.20 3.06
1734 4070 5.630121 TGTGGTAGTCCATTTGAAATGTCT 58.370 37.500 15.93 14.81 46.20 3.41
1735 4071 6.774673 TGTGGTAGTCCATTTGAAATGTCTA 58.225 36.000 15.93 13.97 46.20 2.59
1736 4072 6.878923 TGTGGTAGTCCATTTGAAATGTCTAG 59.121 38.462 15.93 1.90 46.20 2.43
1737 4073 7.103641 GTGGTAGTCCATTTGAAATGTCTAGA 58.896 38.462 15.93 4.16 46.20 2.43
1738 4074 7.606456 GTGGTAGTCCATTTGAAATGTCTAGAA 59.394 37.037 15.93 7.22 46.20 2.10
1739 4075 8.160765 TGGTAGTCCATTTGAAATGTCTAGAAA 58.839 33.333 15.93 0.00 39.03 2.52
1740 4076 8.669243 GGTAGTCCATTTGAAATGTCTAGAAAG 58.331 37.037 15.93 0.00 0.00 2.62
1741 4077 9.436957 GTAGTCCATTTGAAATGTCTAGAAAGA 57.563 33.333 15.93 1.84 0.00 2.52
1758 4094 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1759 4095 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1760 4096 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1761 4097 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1762 4098 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1763 4099 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1764 4100 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1765 4101 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1766 4102 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1767 4103 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1906 4248 2.454336 TGTAGGGATCCATCGTCAGT 57.546 50.000 15.23 0.00 0.00 3.41
1962 4304 3.627395 ATGACTTGGATTCTGCCGTTA 57.373 42.857 0.00 0.00 0.00 3.18
1967 4309 3.055094 ACTTGGATTCTGCCGTTATCACT 60.055 43.478 0.00 0.00 0.00 3.41
2351 4880 5.336531 CGTCTCTTGTACTAATGTTCAGGGT 60.337 44.000 0.00 0.00 0.00 4.34
2368 4897 3.822735 CAGGGTAATGGGCACTTGATATG 59.177 47.826 0.00 0.00 0.00 1.78
2397 4926 3.384668 GGAAGGTTGAAGCAAAGAAAGC 58.615 45.455 0.00 0.00 0.00 3.51
2399 4928 4.278419 GGAAGGTTGAAGCAAAGAAAGCTA 59.722 41.667 0.00 0.00 42.53 3.32
2400 4929 4.837896 AGGTTGAAGCAAAGAAAGCTAC 57.162 40.909 0.00 0.00 42.53 3.58
2416 4946 3.352554 GCTACGGCTCTTTAGTACTCC 57.647 52.381 0.00 0.00 35.22 3.85
2417 4947 2.034432 GCTACGGCTCTTTAGTACTCCC 59.966 54.545 0.00 0.00 35.22 4.30
2418 4948 2.528673 ACGGCTCTTTAGTACTCCCT 57.471 50.000 0.00 0.00 0.00 4.20
2419 4949 2.377073 ACGGCTCTTTAGTACTCCCTC 58.623 52.381 0.00 0.00 0.00 4.30
2420 4950 1.682323 CGGCTCTTTAGTACTCCCTCC 59.318 57.143 0.00 0.00 0.00 4.30
2421 4951 1.682323 GGCTCTTTAGTACTCCCTCCG 59.318 57.143 0.00 0.00 0.00 4.63
2422 4952 2.377073 GCTCTTTAGTACTCCCTCCGT 58.623 52.381 0.00 0.00 0.00 4.69
2423 4953 2.759535 GCTCTTTAGTACTCCCTCCGTT 59.240 50.000 0.00 0.00 0.00 4.44
2424 4954 3.181488 GCTCTTTAGTACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
2425 4955 3.359950 TCTTTAGTACTCCCTCCGTTCC 58.640 50.000 0.00 0.00 0.00 3.62
2426 4956 3.011032 TCTTTAGTACTCCCTCCGTTCCT 59.989 47.826 0.00 0.00 0.00 3.36
2427 4957 4.228210 TCTTTAGTACTCCCTCCGTTCCTA 59.772 45.833 0.00 0.00 0.00 2.94
2428 4958 4.591321 TTAGTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
2429 4959 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2430 4960 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2431 4961 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2432 4962 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2433 4963 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2434 4964 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2435 4965 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2436 4966 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2437 4967 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2438 4968 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2439 4969 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2440 4970 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2441 4971 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2442 4972 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2445 4975 9.257651 CCGTTCCTAAATATAAGTCTTTGTAGG 57.742 37.037 0.00 0.00 0.00 3.18
2446 4976 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
2457 4987 7.554959 AAGTCTTTGTAGGGATTTCACTAGA 57.445 36.000 0.00 0.00 31.50 2.43
2458 4988 7.741554 AGTCTTTGTAGGGATTTCACTAGAT 57.258 36.000 0.00 0.00 31.50 1.98
2459 4989 7.560368 AGTCTTTGTAGGGATTTCACTAGATG 58.440 38.462 0.00 0.00 31.50 2.90
2460 4990 7.181125 AGTCTTTGTAGGGATTTCACTAGATGT 59.819 37.037 0.00 0.00 31.50 3.06
2461 4991 8.475639 GTCTTTGTAGGGATTTCACTAGATGTA 58.524 37.037 0.00 0.00 31.50 2.29
2462 4992 8.475639 TCTTTGTAGGGATTTCACTAGATGTAC 58.524 37.037 0.00 0.00 31.50 2.90
2463 4993 7.973048 TTGTAGGGATTTCACTAGATGTACT 57.027 36.000 0.00 0.00 31.50 2.73
2464 4994 9.483489 TTTGTAGGGATTTCACTAGATGTACTA 57.517 33.333 0.00 0.00 31.50 1.82
2465 4995 8.461249 TGTAGGGATTTCACTAGATGTACTAC 57.539 38.462 0.00 0.00 31.50 2.73
2466 4996 8.057011 TGTAGGGATTTCACTAGATGTACTACA 58.943 37.037 0.00 0.00 31.50 2.74
2467 4997 9.080097 GTAGGGATTTCACTAGATGTACTACAT 57.920 37.037 1.01 1.01 42.43 2.29
2469 4999 9.080097 AGGGATTTCACTAGATGTACTACATAC 57.920 37.037 1.45 0.00 39.27 2.39
2470 5000 8.021973 GGGATTTCACTAGATGTACTACATACG 58.978 40.741 1.45 0.00 39.27 3.06
2471 5001 8.021973 GGATTTCACTAGATGTACTACATACGG 58.978 40.741 1.45 0.00 39.27 4.02
2472 5002 8.687292 ATTTCACTAGATGTACTACATACGGA 57.313 34.615 1.45 0.00 39.27 4.69
2473 5003 7.725818 TTCACTAGATGTACTACATACGGAG 57.274 40.000 1.45 0.98 39.27 4.63
2474 5004 5.699915 TCACTAGATGTACTACATACGGAGC 59.300 44.000 1.45 0.00 39.27 4.70
2475 5005 5.469084 CACTAGATGTACTACATACGGAGCA 59.531 44.000 1.45 0.00 39.27 4.26
2476 5006 6.017357 CACTAGATGTACTACATACGGAGCAA 60.017 42.308 1.45 0.00 39.27 3.91
2477 5007 5.847111 AGATGTACTACATACGGAGCAAA 57.153 39.130 1.45 0.00 39.27 3.68
2478 5008 6.216801 AGATGTACTACATACGGAGCAAAA 57.783 37.500 1.45 0.00 39.27 2.44
2479 5009 6.817184 AGATGTACTACATACGGAGCAAAAT 58.183 36.000 1.45 0.00 39.27 1.82
2480 5010 6.701841 AGATGTACTACATACGGAGCAAAATG 59.298 38.462 1.45 0.00 39.27 2.32
2481 5011 5.968254 TGTACTACATACGGAGCAAAATGA 58.032 37.500 0.00 0.00 36.47 2.57
2482 5012 6.399743 TGTACTACATACGGAGCAAAATGAA 58.600 36.000 0.00 0.00 36.47 2.57
2483 5013 7.045416 TGTACTACATACGGAGCAAAATGAAT 58.955 34.615 0.00 0.00 36.47 2.57
2484 5014 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2485 5015 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2486 5016 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2487 5017 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2488 5018 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2489 5019 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2490 5020 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2491 5021 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2492 5022 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2493 5023 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2494 5024 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
2495 5025 7.542025 GGAGCAAAATGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
2496 5026 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
2518 5048 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2523 5053 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2524 5054 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2525 5055 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2526 5056 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2527 5057 7.764443 GCATCTATATACATCCGTATGTGGTTT 59.236 37.037 3.56 0.00 45.99 3.27
2568 5098 7.527568 AGAGACTTATATTTAGGAACGGAGG 57.472 40.000 0.00 0.00 0.00 4.30
2569 5099 6.494146 AGAGACTTATATTTAGGAACGGAGGG 59.506 42.308 0.00 0.00 0.00 4.30
2686 5216 2.038557 ACTAGGAACACCGAACAAGCAT 59.961 45.455 0.00 0.00 0.00 3.79
2750 5288 1.222113 GGGCTCCTGTACAGCTTCC 59.778 63.158 17.86 15.41 37.05 3.46
2864 5402 6.812879 TCGTCTCTTGTACTAATGTTCAGA 57.187 37.500 0.00 0.00 0.00 3.27
2961 5501 6.882072 CATAAAGTTATGCGTTGATCCTCTC 58.118 40.000 0.00 0.00 34.70 3.20
2969 5509 2.270923 CGTTGATCCTCTCGCATTTGA 58.729 47.619 0.00 0.00 0.00 2.69
2980 5520 1.737236 TCGCATTTGAATTCCGGTCTG 59.263 47.619 0.00 0.00 0.00 3.51
3473 8555 4.098196 GCTCTGGTATTTCCGAGTAGAAGT 59.902 45.833 0.00 0.00 38.31 3.01
3486 8568 4.451096 CGAGTAGAAGTAAGCAAAGCCAAA 59.549 41.667 0.00 0.00 0.00 3.28
3516 8598 9.971922 GGCCGTTAGAAATTATTAGTACTCTAA 57.028 33.333 0.00 0.00 39.95 2.10
3596 8678 3.378112 TCTGTGCTATAAATGCAGGCAAC 59.622 43.478 0.00 0.00 41.41 4.17
3680 8762 9.545105 AGATATGATTGAATTCAGTCTGAAGAC 57.455 33.333 25.68 15.41 40.05 3.01
3986 9093 9.842196 AATATTCTCCCAAGATATCTCTCTCTT 57.158 33.333 5.51 0.00 31.97 2.85
3992 9099 6.549364 TCCCAAGATATCTCTCTCTTTGTCTC 59.451 42.308 5.51 0.00 29.34 3.36
3994 9101 7.255590 CCCAAGATATCTCTCTCTTTGTCTCTC 60.256 44.444 5.51 0.00 29.34 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 96 0.172803 GAGTCGTACCACGCCTCATT 59.827 55.000 5.01 0.00 44.87 2.57
200 216 0.723981 GCGATCCTGAAACTGCACTC 59.276 55.000 0.00 0.00 0.00 3.51
215 235 1.478105 TGATGCTGAGTACACTGCGAT 59.522 47.619 15.25 10.64 37.50 4.58
400 1608 1.340991 ACCAACAACAACAGGAGCAGT 60.341 47.619 0.00 0.00 0.00 4.40
507 1724 4.021925 GGGCTGAACCTGGCGACT 62.022 66.667 0.00 0.00 39.10 4.18
526 1743 1.479323 CGATTTCTTCCTCGGGTGGTA 59.521 52.381 0.00 0.00 0.00 3.25
573 1790 2.359981 TCATCCCCTCGTACGATCTT 57.640 50.000 19.87 0.00 0.00 2.40
616 1834 7.847096 TGGATAAGTAGATGAAAGTGCTGTTA 58.153 34.615 0.00 0.00 0.00 2.41
649 1867 9.206870 ACGAAATGCTGATGAACAATTTAAATT 57.793 25.926 7.64 7.64 0.00 1.82
719 1938 1.598701 GGCGGGTACAGGTACTTCGT 61.599 60.000 18.70 0.00 34.60 3.85
781 2011 2.347490 GACCAGCAGCCTTCCGAA 59.653 61.111 0.00 0.00 0.00 4.30
806 2036 1.006102 CTCTGAACACCGACGGCTT 60.006 57.895 15.39 5.33 0.00 4.35
912 2150 7.982371 ATCAATTTCGAAAGATTCAATCAGC 57.018 32.000 16.80 0.00 41.60 4.26
917 2155 7.369607 TCTGCAATCAATTTCGAAAGATTCAA 58.630 30.769 16.80 9.36 41.60 2.69
948 2187 4.371681 AGTTTGGGGCTAGAGATTTCCTA 58.628 43.478 0.00 0.00 0.00 2.94
957 2196 1.624391 GGGGAGTAGTTTGGGGCTAGA 60.624 57.143 0.00 0.00 0.00 2.43
1051 2305 2.566746 AGGGAAGGAGTCATGTGGATT 58.433 47.619 0.00 0.00 0.00 3.01
1052 2306 2.240667 CAAGGGAAGGAGTCATGTGGAT 59.759 50.000 0.00 0.00 0.00 3.41
1053 2307 1.630369 CAAGGGAAGGAGTCATGTGGA 59.370 52.381 0.00 0.00 0.00 4.02
1056 2310 0.329596 GCCAAGGGAAGGAGTCATGT 59.670 55.000 0.00 0.00 0.00 3.21
1095 2349 8.697507 AGGTGAAGAAACATGAGAAAATTACT 57.302 30.769 0.00 0.00 0.00 2.24
1321 2601 1.701847 ACCTTGATGCTGTCCTTGAGT 59.298 47.619 0.00 0.00 0.00 3.41
1513 2801 0.671796 GGGTTTATAATGCCGGCCAC 59.328 55.000 26.77 1.96 0.00 5.01
1605 3941 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1606 3942 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1607 3943 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1608 3944 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1609 3945 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1610 3946 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1626 3962 8.064814 GTCACTTGTTGAAATGTCTAGAAAGAC 58.935 37.037 0.00 0.00 43.53 3.01
1627 3963 7.987458 AGTCACTTGTTGAAATGTCTAGAAAGA 59.013 33.333 0.00 0.00 35.39 2.52
1628 3964 8.147642 AGTCACTTGTTGAAATGTCTAGAAAG 57.852 34.615 0.00 0.00 35.39 2.62
1629 3965 9.042008 GTAGTCACTTGTTGAAATGTCTAGAAA 57.958 33.333 0.00 0.00 35.39 2.52
1630 3966 8.201464 TGTAGTCACTTGTTGAAATGTCTAGAA 58.799 33.333 0.00 0.00 35.39 2.10
1631 3967 7.722363 TGTAGTCACTTGTTGAAATGTCTAGA 58.278 34.615 0.00 0.00 35.39 2.43
1632 3968 7.946655 TGTAGTCACTTGTTGAAATGTCTAG 57.053 36.000 0.00 0.00 35.39 2.43
1633 3969 9.419297 GTATGTAGTCACTTGTTGAAATGTCTA 57.581 33.333 0.00 0.00 35.39 2.59
1634 3970 7.116376 CGTATGTAGTCACTTGTTGAAATGTCT 59.884 37.037 0.00 0.00 35.39 3.41
1635 3971 7.227461 CGTATGTAGTCACTTGTTGAAATGTC 58.773 38.462 0.00 0.00 35.39 3.06
1636 3972 6.147164 CCGTATGTAGTCACTTGTTGAAATGT 59.853 38.462 0.00 0.00 35.39 2.71
1637 3973 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1638 3974 6.367969 GTCCGTATGTAGTCACTTGTTGAAAT 59.632 38.462 0.00 0.00 35.39 2.17
1639 3975 5.693104 GTCCGTATGTAGTCACTTGTTGAAA 59.307 40.000 0.00 0.00 35.39 2.69
1640 3976 5.224888 GTCCGTATGTAGTCACTTGTTGAA 58.775 41.667 0.00 0.00 35.39 2.69
1641 3977 4.321452 GGTCCGTATGTAGTCACTTGTTGA 60.321 45.833 0.00 0.00 0.00 3.18
1642 3978 3.924686 GGTCCGTATGTAGTCACTTGTTG 59.075 47.826 0.00 0.00 0.00 3.33
1643 3979 3.575256 TGGTCCGTATGTAGTCACTTGTT 59.425 43.478 0.00 0.00 0.00 2.83
1644 3980 3.159472 TGGTCCGTATGTAGTCACTTGT 58.841 45.455 0.00 0.00 0.00 3.16
1645 3981 3.861276 TGGTCCGTATGTAGTCACTTG 57.139 47.619 0.00 0.00 0.00 3.16
1646 3982 4.877378 TTTGGTCCGTATGTAGTCACTT 57.123 40.909 0.00 0.00 0.00 3.16
1647 3983 4.877378 TTTTGGTCCGTATGTAGTCACT 57.123 40.909 0.00 0.00 0.00 3.41
1648 3984 5.172934 TCATTTTGGTCCGTATGTAGTCAC 58.827 41.667 0.00 0.00 0.00 3.67
1649 3985 5.046878 ACTCATTTTGGTCCGTATGTAGTCA 60.047 40.000 0.00 0.00 0.00 3.41
1650 3986 5.291128 CACTCATTTTGGTCCGTATGTAGTC 59.709 44.000 0.00 0.00 0.00 2.59
1651 3987 5.046878 TCACTCATTTTGGTCCGTATGTAGT 60.047 40.000 0.00 0.00 0.00 2.73
1652 3988 5.416083 TCACTCATTTTGGTCCGTATGTAG 58.584 41.667 0.00 0.00 0.00 2.74
1653 3989 5.408880 TCACTCATTTTGGTCCGTATGTA 57.591 39.130 0.00 0.00 0.00 2.29
1654 3990 4.280436 TCACTCATTTTGGTCCGTATGT 57.720 40.909 0.00 0.00 0.00 2.29
1655 3991 5.586243 AGATTCACTCATTTTGGTCCGTATG 59.414 40.000 0.00 0.00 0.00 2.39
1656 3992 5.745227 AGATTCACTCATTTTGGTCCGTAT 58.255 37.500 0.00 0.00 0.00 3.06
1657 3993 5.160607 AGATTCACTCATTTTGGTCCGTA 57.839 39.130 0.00 0.00 0.00 4.02
1658 3994 4.021102 AGATTCACTCATTTTGGTCCGT 57.979 40.909 0.00 0.00 0.00 4.69
1659 3995 4.935205 TGTAGATTCACTCATTTTGGTCCG 59.065 41.667 0.00 0.00 0.00 4.79
1660 3996 5.940470 AGTGTAGATTCACTCATTTTGGTCC 59.060 40.000 0.00 0.00 44.07 4.46
1692 4028 7.956328 ACCACATACGGATATATGTAGACAT 57.044 36.000 0.08 0.08 42.63 3.06
1693 4029 8.105197 ACTACCACATACGGATATATGTAGACA 58.895 37.037 10.88 0.00 42.63 3.41
1694 4030 8.503458 ACTACCACATACGGATATATGTAGAC 57.497 38.462 10.88 0.00 42.63 2.59
1695 4031 7.772292 GGACTACCACATACGGATATATGTAGA 59.228 40.741 10.88 0.00 42.63 2.59
1696 4032 7.555195 TGGACTACCACATACGGATATATGTAG 59.445 40.741 0.00 0.00 42.63 2.74
1697 4033 7.404481 TGGACTACCACATACGGATATATGTA 58.596 38.462 0.00 0.00 42.63 2.29
1698 4034 6.250711 TGGACTACCACATACGGATATATGT 58.749 40.000 0.00 0.00 44.84 2.29
1699 4035 6.769134 TGGACTACCACATACGGATATATG 57.231 41.667 0.00 0.00 41.77 1.78
1714 4050 8.561738 TTTCTAGACATTTCAAATGGACTACC 57.438 34.615 14.70 0.00 0.00 3.18
1715 4051 9.436957 TCTTTCTAGACATTTCAAATGGACTAC 57.563 33.333 14.70 1.26 0.00 2.73
1732 4068 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1733 4069 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1734 4070 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1735 4071 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1736 4072 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1737 4073 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1738 4074 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1739 4075 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1740 4076 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1741 4077 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1742 4078 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1743 4079 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1744 4080 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1745 4081 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1746 4082 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1747 4083 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1748 4084 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1749 4085 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1750 4086 2.622452 CCTTGTACTCCCTCCGTTCCTA 60.622 54.545 0.00 0.00 0.00 2.94
1751 4087 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
1752 4088 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
1753 4089 1.264295 ACCTTGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
1754 4090 2.225217 ACTACCTTGTACTCCCTCCGTT 60.225 50.000 0.00 0.00 0.00 4.44
1755 4091 1.357079 ACTACCTTGTACTCCCTCCGT 59.643 52.381 0.00 0.00 0.00 4.69
1756 4092 2.140839 ACTACCTTGTACTCCCTCCG 57.859 55.000 0.00 0.00 0.00 4.63
1757 4093 3.703556 GGTTACTACCTTGTACTCCCTCC 59.296 52.174 0.00 0.00 41.53 4.30
1758 4094 4.347607 TGGTTACTACCTTGTACTCCCTC 58.652 47.826 0.00 0.00 45.27 4.30
1759 4095 4.202760 ACTGGTTACTACCTTGTACTCCCT 60.203 45.833 0.00 0.00 45.27 4.20
1760 4096 4.092279 ACTGGTTACTACCTTGTACTCCC 58.908 47.826 0.00 0.00 45.27 4.30
1761 4097 5.735285 AACTGGTTACTACCTTGTACTCC 57.265 43.478 0.00 0.00 45.27 3.85
1762 4098 8.960591 TGTATAACTGGTTACTACCTTGTACTC 58.039 37.037 0.00 0.00 45.27 2.59
1763 4099 8.884124 TGTATAACTGGTTACTACCTTGTACT 57.116 34.615 0.00 0.00 45.27 2.73
1764 4100 9.525409 CATGTATAACTGGTTACTACCTTGTAC 57.475 37.037 0.00 0.00 45.27 2.90
1765 4101 8.199449 GCATGTATAACTGGTTACTACCTTGTA 58.801 37.037 0.00 0.00 45.27 2.41
1766 4102 7.046033 GCATGTATAACTGGTTACTACCTTGT 58.954 38.462 0.00 0.00 45.27 3.16
1767 4103 7.272978 AGCATGTATAACTGGTTACTACCTTG 58.727 38.462 0.00 0.00 45.27 3.61
1906 4248 7.039574 ACAATGGATCTGAATCAATGAACAACA 60.040 33.333 0.00 0.00 33.21 3.33
1962 4304 1.115467 CTGAACCTCGGGCTAGTGAT 58.885 55.000 0.00 0.00 0.00 3.06
1967 4309 0.261991 AGGATCTGAACCTCGGGCTA 59.738 55.000 0.00 0.00 31.43 3.93
2049 4391 5.175126 CGTAGACTATAAATCCAAAGCCACG 59.825 44.000 0.00 0.00 0.00 4.94
2138 4480 7.954056 TGATGGCCACCTATAGTTTAGTAGTAT 59.046 37.037 8.16 0.00 0.00 2.12
2154 4496 9.023962 TCATTTATCTAAAATATGATGGCCACC 57.976 33.333 8.16 0.00 0.00 4.61
2351 4880 5.630121 CCCTAACATATCAAGTGCCCATTA 58.370 41.667 0.00 0.00 0.00 1.90
2368 4897 1.450025 CTTCAACCTTCCGCCCTAAC 58.550 55.000 0.00 0.00 0.00 2.34
2397 4926 3.553904 AGGGAGTACTAAAGAGCCGTAG 58.446 50.000 0.00 0.00 0.00 3.51
2399 4928 2.377073 GAGGGAGTACTAAAGAGCCGT 58.623 52.381 0.00 0.00 0.00 5.68
2400 4929 1.682323 GGAGGGAGTACTAAAGAGCCG 59.318 57.143 0.00 0.00 0.00 5.52
2409 4938 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
2410 4939 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
2411 4940 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2412 4941 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2413 4943 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2414 4944 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2415 4945 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2416 4946 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2417 4947 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2419 4949 9.257651 CCTACAAAGACTTATATTTAGGAACGG 57.742 37.037 0.00 0.00 0.00 4.44
2420 4950 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
2431 4961 9.268282 TCTAGTGAAATCCCTACAAAGACTTAT 57.732 33.333 0.00 0.00 0.00 1.73
2432 4962 8.660295 TCTAGTGAAATCCCTACAAAGACTTA 57.340 34.615 0.00 0.00 0.00 2.24
2433 4963 7.554959 TCTAGTGAAATCCCTACAAAGACTT 57.445 36.000 0.00 0.00 0.00 3.01
2434 4964 7.181125 ACATCTAGTGAAATCCCTACAAAGACT 59.819 37.037 0.00 0.00 0.00 3.24
2435 4965 7.331791 ACATCTAGTGAAATCCCTACAAAGAC 58.668 38.462 0.00 0.00 0.00 3.01
2436 4966 7.496346 ACATCTAGTGAAATCCCTACAAAGA 57.504 36.000 0.00 0.00 0.00 2.52
2437 4967 8.478877 AGTACATCTAGTGAAATCCCTACAAAG 58.521 37.037 0.00 0.00 0.00 2.77
2438 4968 8.375493 AGTACATCTAGTGAAATCCCTACAAA 57.625 34.615 0.00 0.00 0.00 2.83
2439 4969 7.973048 AGTACATCTAGTGAAATCCCTACAA 57.027 36.000 0.00 0.00 0.00 2.41
2440 4970 8.057011 TGTAGTACATCTAGTGAAATCCCTACA 58.943 37.037 0.00 0.00 0.00 2.74
2441 4971 8.461249 TGTAGTACATCTAGTGAAATCCCTAC 57.539 38.462 0.00 0.00 0.00 3.18
2443 4973 9.080097 GTATGTAGTACATCTAGTGAAATCCCT 57.920 37.037 19.01 0.00 39.88 4.20
2444 4974 8.021973 CGTATGTAGTACATCTAGTGAAATCCC 58.978 40.741 19.01 0.00 39.88 3.85
2445 4975 8.021973 CCGTATGTAGTACATCTAGTGAAATCC 58.978 40.741 19.01 0.00 39.88 3.01
2446 4976 8.781196 TCCGTATGTAGTACATCTAGTGAAATC 58.219 37.037 19.01 0.00 39.88 2.17
2447 4977 8.687292 TCCGTATGTAGTACATCTAGTGAAAT 57.313 34.615 19.01 0.00 39.88 2.17
2448 4978 7.255035 GCTCCGTATGTAGTACATCTAGTGAAA 60.255 40.741 19.01 0.00 39.88 2.69
2449 4979 6.204301 GCTCCGTATGTAGTACATCTAGTGAA 59.796 42.308 19.01 0.00 39.88 3.18
2450 4980 5.699915 GCTCCGTATGTAGTACATCTAGTGA 59.300 44.000 19.01 9.19 39.88 3.41
2451 4981 5.469084 TGCTCCGTATGTAGTACATCTAGTG 59.531 44.000 19.01 10.44 39.88 2.74
2452 4982 5.618236 TGCTCCGTATGTAGTACATCTAGT 58.382 41.667 19.01 0.00 39.88 2.57
2453 4983 6.555812 TTGCTCCGTATGTAGTACATCTAG 57.444 41.667 19.01 12.66 39.88 2.43
2454 4984 6.947644 TTTGCTCCGTATGTAGTACATCTA 57.052 37.500 19.01 0.13 39.88 1.98
2455 4985 5.847111 TTTGCTCCGTATGTAGTACATCT 57.153 39.130 19.01 0.09 39.88 2.90
2456 4986 6.700081 TCATTTTGCTCCGTATGTAGTACATC 59.300 38.462 19.01 10.11 39.88 3.06
2457 4987 6.578944 TCATTTTGCTCCGTATGTAGTACAT 58.421 36.000 19.36 19.36 42.35 2.29
2458 4988 5.968254 TCATTTTGCTCCGTATGTAGTACA 58.032 37.500 5.24 5.24 32.61 2.90
2459 4989 6.897259 TTCATTTTGCTCCGTATGTAGTAC 57.103 37.500 0.00 0.00 0.00 2.73
2460 4990 7.269316 TCATTCATTTTGCTCCGTATGTAGTA 58.731 34.615 0.00 0.00 0.00 1.82
2461 4991 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2462 4992 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2463 4993 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2464 4994 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2465 4995 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2466 4996 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2467 4997 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2468 4998 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2469 4999 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2470 5000 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
2492 5022 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2496 5026 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2497 5027 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2498 5028 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2499 5029 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2500 5030 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2501 5031 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2542 5072 8.422566 CCTCCGTTCCTAAATATAAGTCTCTTT 58.577 37.037 0.00 0.00 0.00 2.52
2543 5073 7.015389 CCCTCCGTTCCTAAATATAAGTCTCTT 59.985 40.741 0.00 0.00 0.00 2.85
2544 5074 6.494146 CCCTCCGTTCCTAAATATAAGTCTCT 59.506 42.308 0.00 0.00 0.00 3.10
2545 5075 6.492772 TCCCTCCGTTCCTAAATATAAGTCTC 59.507 42.308 0.00 0.00 0.00 3.36
2546 5076 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2547 5077 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2548 5078 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2549 5079 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2551 5081 9.638176 GATATACTCCCTCCGTTCCTAAATATA 57.362 37.037 0.00 0.00 0.00 0.86
2552 5082 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
2553 5083 7.706674 AGATATACTCCCTCCGTTCCTAAATA 58.293 38.462 0.00 0.00 0.00 1.40
2554 5084 6.563163 AGATATACTCCCTCCGTTCCTAAAT 58.437 40.000 0.00 0.00 0.00 1.40
2555 5085 5.961897 AGATATACTCCCTCCGTTCCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
2556 5086 5.595814 AGATATACTCCCTCCGTTCCTAA 57.404 43.478 0.00 0.00 0.00 2.69
2557 5087 5.595814 AAGATATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
2558 5088 4.472690 AAGATATACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
2559 5089 6.008960 TCTAAAGATATACTCCCTCCGTTCC 58.991 44.000 0.00 0.00 0.00 3.62
2560 5090 7.706100 ATCTAAAGATATACTCCCTCCGTTC 57.294 40.000 0.00 0.00 32.01 3.95
2561 5091 8.368668 CAAATCTAAAGATATACTCCCTCCGTT 58.631 37.037 0.00 0.00 33.73 4.44
2562 5092 7.525692 GCAAATCTAAAGATATACTCCCTCCGT 60.526 40.741 0.00 0.00 33.73 4.69
2563 5093 6.814146 GCAAATCTAAAGATATACTCCCTCCG 59.186 42.308 0.00 0.00 33.73 4.63
2564 5094 6.814146 CGCAAATCTAAAGATATACTCCCTCC 59.186 42.308 0.00 0.00 33.73 4.30
2565 5095 6.814146 CCGCAAATCTAAAGATATACTCCCTC 59.186 42.308 0.00 0.00 33.73 4.30
2566 5096 6.702329 CCGCAAATCTAAAGATATACTCCCT 58.298 40.000 0.00 0.00 33.73 4.20
2567 5097 5.351740 GCCGCAAATCTAAAGATATACTCCC 59.648 44.000 0.00 0.00 33.73 4.30
2568 5098 6.166982 AGCCGCAAATCTAAAGATATACTCC 58.833 40.000 0.00 0.00 33.73 3.85
2569 5099 7.093992 AGAGCCGCAAATCTAAAGATATACTC 58.906 38.462 0.00 0.00 33.73 2.59
2714 5244 5.262009 GAGCCCAAAAGGAAACCTATAGTT 58.738 41.667 0.00 0.00 38.24 2.24
2750 5288 8.408043 TCCCACAATTAATTTATGATGCTAGG 57.592 34.615 9.77 3.52 0.00 3.02
2951 5491 4.336433 GGAATTCAAATGCGAGAGGATCAA 59.664 41.667 7.93 0.00 43.29 2.57
2961 5501 1.737236 TCAGACCGGAATTCAAATGCG 59.263 47.619 9.46 0.87 0.00 4.73
2969 5509 0.613777 GTCAGGGTCAGACCGGAATT 59.386 55.000 9.46 0.00 39.83 2.17
2980 5520 2.675317 GCATATCCGCATAGTCAGGGTC 60.675 54.545 0.00 0.00 0.00 4.46
3486 8568 9.623000 AGTACTAATAATTTCTAACGGCCATTT 57.377 29.630 2.24 0.00 0.00 2.32
3596 8678 4.630069 CGTATGGTCTTCCTACCTTTTGTG 59.370 45.833 0.00 0.00 40.44 3.33
3680 8762 4.757149 ACAAATTCCTCCTTCAAGTCTTCG 59.243 41.667 0.00 0.00 0.00 3.79
3682 8764 4.829492 CCACAAATTCCTCCTTCAAGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
3848 8930 7.986704 AGACTATTCTATGGTGTACCTAGCTA 58.013 38.462 2.32 0.00 36.82 3.32
3849 8931 6.854578 AGACTATTCTATGGTGTACCTAGCT 58.145 40.000 2.32 0.00 36.82 3.32
3850 8932 6.715718 TGAGACTATTCTATGGTGTACCTAGC 59.284 42.308 2.32 0.00 31.80 3.42
3851 8933 7.720074 TGTGAGACTATTCTATGGTGTACCTAG 59.280 40.741 2.32 2.65 31.80 3.02
3986 9093 2.233676 ACACACACACACAGAGAGACAA 59.766 45.455 0.00 0.00 0.00 3.18
3992 9099 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
3994 9101 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.