Multiple sequence alignment - TraesCS3B01G535100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G535100 chr3B 100.000 2899 0 0 464 3362 774949063 774946165 0.000000e+00 5354
1 TraesCS3B01G535100 chr3B 100.000 321 0 0 1 321 774949526 774949206 8.030000e-166 593
2 TraesCS3B01G535100 chr3B 94.667 75 2 2 216 289 784492128 784492201 7.620000e-22 115
3 TraesCS3B01G535100 chr3B 94.667 75 2 2 216 289 784558347 784558420 7.620000e-22 115
4 TraesCS3B01G535100 chr3D 89.185 2894 168 70 509 3332 580087971 580090789 0.000000e+00 3476
5 TraesCS3B01G535100 chr3D 91.349 289 24 1 2 289 44173977 44173689 8.740000e-106 394
6 TraesCS3B01G535100 chr3A 86.387 2740 182 80 492 3159 715277979 715280599 0.000000e+00 2817
7 TraesCS3B01G535100 chr6B 78.810 807 88 42 2162 2930 234921797 234922558 1.830000e-127 466
8 TraesCS3B01G535100 chr6B 88.327 257 28 1 1988 2244 234921481 234921735 1.170000e-79 307
9 TraesCS3B01G535100 chr6B 82.456 285 44 5 9 289 423206404 423206122 9.320000e-61 244
10 TraesCS3B01G535100 chr6B 74.240 691 97 49 2138 2807 334783036 334782406 7.310000e-52 215
11 TraesCS3B01G535100 chr6B 73.599 678 103 50 2142 2801 529052861 529053480 1.230000e-44 191
12 TraesCS3B01G535100 chr6D 75.850 824 97 60 2138 2930 10408036 10407284 3.230000e-85 326
13 TraesCS3B01G535100 chr7A 84.014 294 42 3 1 289 725202447 725202740 9.190000e-71 278
14 TraesCS3B01G535100 chr5A 75.731 581 69 38 2375 2930 80937681 80937148 3.380000e-55 226
15 TraesCS3B01G535100 chr4B 74.269 684 103 43 2141 2807 47130742 47131369 1.570000e-53 220
16 TraesCS3B01G535100 chr4B 74.200 531 61 43 2310 2807 175062682 175062195 5.810000e-33 152
17 TraesCS3B01G535100 chr6A 81.696 224 25 7 2718 2930 11904870 11904652 4.460000e-39 172
18 TraesCS3B01G535100 chr6A 77.253 233 17 14 2310 2518 11905854 11905634 1.650000e-18 104
19 TraesCS3B01G535100 chr4D 82.439 205 29 6 89 289 403588390 403588189 4.460000e-39 172
20 TraesCS3B01G535100 chr4D 83.333 126 12 6 161 284 161283531 161283649 1.280000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G535100 chr3B 774946165 774949526 3361 True 2973.5 5354 100.0000 1 3362 2 chr3B.!!$R1 3361
1 TraesCS3B01G535100 chr3D 580087971 580090789 2818 False 3476.0 3476 89.1850 509 3332 1 chr3D.!!$F1 2823
2 TraesCS3B01G535100 chr3A 715277979 715280599 2620 False 2817.0 2817 86.3870 492 3159 1 chr3A.!!$F1 2667
3 TraesCS3B01G535100 chr6B 234921481 234922558 1077 False 386.5 466 83.5685 1988 2930 2 chr6B.!!$F2 942
4 TraesCS3B01G535100 chr6B 334782406 334783036 630 True 215.0 215 74.2400 2138 2807 1 chr6B.!!$R1 669
5 TraesCS3B01G535100 chr6D 10407284 10408036 752 True 326.0 326 75.8500 2138 2930 1 chr6D.!!$R1 792
6 TraesCS3B01G535100 chr5A 80937148 80937681 533 True 226.0 226 75.7310 2375 2930 1 chr5A.!!$R1 555
7 TraesCS3B01G535100 chr4B 47130742 47131369 627 False 220.0 220 74.2690 2141 2807 1 chr4B.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.033796 CAACTCCATGGGCACATCCT 60.034 55.0 13.02 0.0 34.35 3.24 F
211 212 0.183971 CAGGTGTTGGTGGGGTTGTA 59.816 55.0 0.00 0.0 0.00 2.41 F
840 864 0.250901 GAGCCAAAACCTCTGAGCCA 60.251 55.0 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1444 0.605589 CAGAGGTCGAAGAAGTGCCT 59.394 55.0 0.0 0.0 39.69 4.75 R
1407 1446 1.016653 GGCAGAGGTCGAAGAAGTGC 61.017 60.0 0.0 0.0 39.69 4.40 R
2603 2838 0.107410 GGAAGGGACACACACACACA 60.107 55.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.416119 CGATACTTTAGTCACGGCAGA 57.584 47.619 0.00 0.00 0.00 4.26
21 22 3.106672 CGATACTTTAGTCACGGCAGAC 58.893 50.000 0.00 0.00 38.81 3.51
22 23 3.427098 CGATACTTTAGTCACGGCAGACA 60.427 47.826 9.38 0.00 40.98 3.41
23 24 2.150397 ACTTTAGTCACGGCAGACAC 57.850 50.000 9.38 0.00 40.98 3.67
24 25 1.270147 ACTTTAGTCACGGCAGACACC 60.270 52.381 9.38 0.00 40.98 4.16
25 26 1.000955 CTTTAGTCACGGCAGACACCT 59.999 52.381 9.38 0.00 40.98 4.00
26 27 0.317160 TTAGTCACGGCAGACACCTG 59.683 55.000 9.38 0.00 40.98 4.00
27 28 1.532604 TAGTCACGGCAGACACCTGG 61.533 60.000 9.38 0.00 40.98 4.45
28 29 3.625897 TCACGGCAGACACCTGGG 61.626 66.667 0.00 0.00 40.72 4.45
29 30 3.625897 CACGGCAGACACCTGGGA 61.626 66.667 0.00 0.00 40.72 4.37
30 31 2.847234 ACGGCAGACACCTGGGAA 60.847 61.111 0.00 0.00 40.72 3.97
31 32 2.358737 CGGCAGACACCTGGGAAC 60.359 66.667 0.00 0.00 40.72 3.62
32 33 2.883828 CGGCAGACACCTGGGAACT 61.884 63.158 0.00 0.00 40.72 3.01
33 34 1.302832 GGCAGACACCTGGGAACTG 60.303 63.158 0.00 5.36 40.72 3.16
34 35 1.451936 GCAGACACCTGGGAACTGT 59.548 57.895 14.23 3.38 40.72 3.55
35 36 0.886490 GCAGACACCTGGGAACTGTG 60.886 60.000 14.23 0.00 40.72 3.66
36 37 0.250467 CAGACACCTGGGAACTGTGG 60.250 60.000 0.00 0.00 37.87 4.17
37 38 0.399949 AGACACCTGGGAACTGTGGA 60.400 55.000 0.00 0.00 37.87 4.02
38 39 0.035458 GACACCTGGGAACTGTGGAG 59.965 60.000 0.00 0.00 37.87 3.86
39 40 1.376466 CACCTGGGAACTGTGGAGG 59.624 63.158 0.00 0.00 32.43 4.30
40 41 2.352805 CCTGGGAACTGTGGAGGC 59.647 66.667 0.00 0.00 0.00 4.70
41 42 2.528818 CCTGGGAACTGTGGAGGCA 61.529 63.158 0.00 0.00 0.00 4.75
42 43 1.455849 CTGGGAACTGTGGAGGCAA 59.544 57.895 0.00 0.00 0.00 4.52
43 44 0.890996 CTGGGAACTGTGGAGGCAAC 60.891 60.000 0.00 0.00 0.00 4.17
44 45 1.966451 GGGAACTGTGGAGGCAACG 60.966 63.158 0.00 0.00 46.39 4.10
45 46 2.617274 GGAACTGTGGAGGCAACGC 61.617 63.158 0.00 0.00 46.39 4.84
46 47 1.891919 GAACTGTGGAGGCAACGCA 60.892 57.895 0.00 0.00 46.39 5.24
47 48 1.444119 GAACTGTGGAGGCAACGCAA 61.444 55.000 0.00 0.00 46.39 4.85
48 49 1.724582 AACTGTGGAGGCAACGCAAC 61.725 55.000 0.00 0.00 41.37 4.17
49 50 3.240606 CTGTGGAGGCAACGCAACG 62.241 63.158 0.00 0.00 44.45 4.10
50 51 4.683334 GTGGAGGCAACGCAACGC 62.683 66.667 0.00 0.00 46.39 4.84
56 57 4.783903 GCAACGCAACGCCATAAT 57.216 50.000 0.00 0.00 0.00 1.28
57 58 2.277583 GCAACGCAACGCCATAATG 58.722 52.632 0.00 0.00 0.00 1.90
58 59 0.455972 GCAACGCAACGCCATAATGT 60.456 50.000 0.00 0.00 0.00 2.71
59 60 1.975837 CAACGCAACGCCATAATGTT 58.024 45.000 0.00 0.00 0.00 2.71
60 61 2.323959 CAACGCAACGCCATAATGTTT 58.676 42.857 0.00 0.00 0.00 2.83
61 62 3.493272 CAACGCAACGCCATAATGTTTA 58.507 40.909 0.00 0.00 0.00 2.01
62 63 3.833545 ACGCAACGCCATAATGTTTAA 57.166 38.095 0.00 0.00 0.00 1.52
63 64 3.494232 ACGCAACGCCATAATGTTTAAC 58.506 40.909 0.00 0.00 0.00 2.01
64 65 2.849473 CGCAACGCCATAATGTTTAACC 59.151 45.455 0.00 0.00 0.00 2.85
65 66 2.849473 GCAACGCCATAATGTTTAACCG 59.151 45.455 0.00 0.00 0.00 4.44
66 67 2.836479 ACGCCATAATGTTTAACCGC 57.164 45.000 0.00 0.00 0.00 5.68
67 68 1.062880 ACGCCATAATGTTTAACCGCG 59.937 47.619 0.00 0.00 43.66 6.46
68 69 1.472990 GCCATAATGTTTAACCGCGC 58.527 50.000 0.00 0.00 0.00 6.86
69 70 1.202200 GCCATAATGTTTAACCGCGCA 60.202 47.619 8.75 0.00 0.00 6.09
70 71 2.715268 CCATAATGTTTAACCGCGCAG 58.285 47.619 8.75 0.00 0.00 5.18
71 72 2.353269 CCATAATGTTTAACCGCGCAGA 59.647 45.455 8.75 0.00 0.00 4.26
72 73 3.003275 CCATAATGTTTAACCGCGCAGAT 59.997 43.478 8.75 0.00 0.00 2.90
73 74 2.825086 AATGTTTAACCGCGCAGATC 57.175 45.000 8.75 0.00 0.00 2.75
74 75 1.732941 ATGTTTAACCGCGCAGATCA 58.267 45.000 8.75 0.00 0.00 2.92
75 76 1.514003 TGTTTAACCGCGCAGATCAA 58.486 45.000 8.75 0.00 0.00 2.57
76 77 1.195900 TGTTTAACCGCGCAGATCAAC 59.804 47.619 8.75 4.98 0.00 3.18
77 78 1.195900 GTTTAACCGCGCAGATCAACA 59.804 47.619 8.75 0.00 0.00 3.33
78 79 1.514003 TTAACCGCGCAGATCAACAA 58.486 45.000 8.75 0.00 0.00 2.83
79 80 1.514003 TAACCGCGCAGATCAACAAA 58.486 45.000 8.75 0.00 0.00 2.83
80 81 0.881118 AACCGCGCAGATCAACAAAT 59.119 45.000 8.75 0.00 0.00 2.32
81 82 0.168788 ACCGCGCAGATCAACAAATG 59.831 50.000 8.75 0.00 0.00 2.32
82 83 0.168788 CCGCGCAGATCAACAAATGT 59.831 50.000 8.75 0.00 0.00 2.71
83 84 1.527696 CGCGCAGATCAACAAATGTC 58.472 50.000 8.75 0.00 0.00 3.06
84 85 1.136000 CGCGCAGATCAACAAATGTCA 60.136 47.619 8.75 0.00 0.00 3.58
85 86 2.512885 GCGCAGATCAACAAATGTCAG 58.487 47.619 0.30 0.00 0.00 3.51
86 87 2.095567 GCGCAGATCAACAAATGTCAGT 60.096 45.455 0.30 0.00 0.00 3.41
87 88 3.610114 GCGCAGATCAACAAATGTCAGTT 60.610 43.478 0.30 0.00 0.00 3.16
88 89 3.910170 CGCAGATCAACAAATGTCAGTTG 59.090 43.478 11.33 11.33 44.84 3.16
89 90 3.671928 GCAGATCAACAAATGTCAGTTGC 59.328 43.478 12.74 0.00 43.55 4.17
90 91 4.793678 GCAGATCAACAAATGTCAGTTGCA 60.794 41.667 12.74 0.00 43.55 4.08
91 92 4.678287 CAGATCAACAAATGTCAGTTGCAC 59.322 41.667 12.74 3.25 43.55 4.57
92 93 4.338964 AGATCAACAAATGTCAGTTGCACA 59.661 37.500 12.74 0.00 43.55 4.57
93 94 4.446994 TCAACAAATGTCAGTTGCACAA 57.553 36.364 12.74 0.00 43.55 3.33
94 95 4.172505 TCAACAAATGTCAGTTGCACAAC 58.827 39.130 12.74 5.36 43.55 3.32
106 107 4.498346 CACAACTCCATGGGCACA 57.502 55.556 13.02 0.00 0.00 4.57
107 108 2.965805 CACAACTCCATGGGCACAT 58.034 52.632 13.02 0.00 37.99 3.21
108 109 0.813184 CACAACTCCATGGGCACATC 59.187 55.000 13.02 0.00 34.35 3.06
109 110 0.323725 ACAACTCCATGGGCACATCC 60.324 55.000 13.02 0.00 34.35 3.51
110 111 0.033796 CAACTCCATGGGCACATCCT 60.034 55.000 13.02 0.00 34.35 3.24
111 112 0.033796 AACTCCATGGGCACATCCTG 60.034 55.000 13.02 0.00 34.35 3.86
112 113 1.152819 CTCCATGGGCACATCCTGG 60.153 63.158 13.02 0.00 34.35 4.45
113 114 1.619057 TCCATGGGCACATCCTGGA 60.619 57.895 13.02 5.64 34.35 3.86
114 115 0.995132 TCCATGGGCACATCCTGGAT 60.995 55.000 13.02 2.57 34.35 3.41
115 116 0.826256 CCATGGGCACATCCTGGATG 60.826 60.000 30.31 30.31 44.71 3.51
116 117 0.184211 CATGGGCACATCCTGGATGA 59.816 55.000 36.59 18.56 42.09 2.92
117 118 0.477204 ATGGGCACATCCTGGATGAG 59.523 55.000 36.59 30.34 42.09 2.90
118 119 0.621280 TGGGCACATCCTGGATGAGA 60.621 55.000 36.59 15.12 42.09 3.27
119 120 0.769873 GGGCACATCCTGGATGAGAT 59.230 55.000 36.59 16.72 42.09 2.75
120 121 1.271271 GGGCACATCCTGGATGAGATC 60.271 57.143 36.59 24.14 42.09 2.75
121 122 1.419012 GGCACATCCTGGATGAGATCA 59.581 52.381 36.59 0.00 42.09 2.92
122 123 2.158711 GGCACATCCTGGATGAGATCAA 60.159 50.000 36.59 0.00 42.09 2.57
123 124 3.139850 GCACATCCTGGATGAGATCAAG 58.860 50.000 36.59 19.21 42.09 3.02
127 128 2.953284 CCTGGATGAGATCAAGGCAT 57.047 50.000 0.00 0.00 43.31 4.40
128 129 2.505405 CCTGGATGAGATCAAGGCATG 58.495 52.381 0.00 0.00 43.31 4.06
129 130 2.505405 CTGGATGAGATCAAGGCATGG 58.495 52.381 0.00 0.00 0.00 3.66
130 131 2.105993 CTGGATGAGATCAAGGCATGGA 59.894 50.000 0.00 0.00 0.00 3.41
131 132 2.510800 TGGATGAGATCAAGGCATGGAA 59.489 45.455 0.00 0.00 0.00 3.53
132 133 3.147629 GGATGAGATCAAGGCATGGAAG 58.852 50.000 0.00 0.00 0.00 3.46
133 134 2.723322 TGAGATCAAGGCATGGAAGG 57.277 50.000 0.00 0.00 0.00 3.46
134 135 2.199208 TGAGATCAAGGCATGGAAGGA 58.801 47.619 0.00 0.00 0.00 3.36
135 136 2.577563 TGAGATCAAGGCATGGAAGGAA 59.422 45.455 0.00 0.00 0.00 3.36
136 137 3.212685 GAGATCAAGGCATGGAAGGAAG 58.787 50.000 0.00 0.00 0.00 3.46
137 138 1.680207 GATCAAGGCATGGAAGGAAGC 59.320 52.381 0.00 0.00 0.00 3.86
140 141 2.830370 GGCATGGAAGGAAGCCGG 60.830 66.667 0.00 0.00 37.41 6.13
141 142 2.044946 GCATGGAAGGAAGCCGGT 60.045 61.111 1.90 0.00 0.00 5.28
142 143 2.409870 GCATGGAAGGAAGCCGGTG 61.410 63.158 1.90 0.00 0.00 4.94
143 144 1.002134 CATGGAAGGAAGCCGGTGT 60.002 57.895 1.90 0.00 0.00 4.16
144 145 1.002134 ATGGAAGGAAGCCGGTGTG 60.002 57.895 1.90 0.00 0.00 3.82
145 146 2.359975 GGAAGGAAGCCGGTGTGG 60.360 66.667 1.90 0.00 42.50 4.17
146 147 2.359975 GAAGGAAGCCGGTGTGGG 60.360 66.667 1.90 0.00 38.63 4.61
154 155 4.704833 CCGGTGTGGGTGCTGGAG 62.705 72.222 0.00 0.00 33.04 3.86
155 156 3.941188 CGGTGTGGGTGCTGGAGT 61.941 66.667 0.00 0.00 0.00 3.85
156 157 2.515901 GGTGTGGGTGCTGGAGTT 59.484 61.111 0.00 0.00 0.00 3.01
157 158 1.600916 GGTGTGGGTGCTGGAGTTC 60.601 63.158 0.00 0.00 0.00 3.01
158 159 1.451936 GTGTGGGTGCTGGAGTTCT 59.548 57.895 0.00 0.00 0.00 3.01
159 160 0.685097 GTGTGGGTGCTGGAGTTCTA 59.315 55.000 0.00 0.00 0.00 2.10
160 161 0.685097 TGTGGGTGCTGGAGTTCTAC 59.315 55.000 0.00 0.00 0.00 2.59
161 162 0.685097 GTGGGTGCTGGAGTTCTACA 59.315 55.000 0.00 0.00 0.00 2.74
162 163 0.685097 TGGGTGCTGGAGTTCTACAC 59.315 55.000 0.00 0.00 0.00 2.90
163 164 0.685097 GGGTGCTGGAGTTCTACACA 59.315 55.000 0.00 0.00 32.89 3.72
164 165 1.338200 GGGTGCTGGAGTTCTACACAG 60.338 57.143 0.00 0.00 32.89 3.66
165 166 1.618837 GGTGCTGGAGTTCTACACAGA 59.381 52.381 0.00 0.00 32.86 3.41
166 167 2.234908 GGTGCTGGAGTTCTACACAGAT 59.765 50.000 0.00 0.00 32.86 2.90
167 168 3.307059 GGTGCTGGAGTTCTACACAGATT 60.307 47.826 0.00 0.00 32.86 2.40
168 169 3.929610 GTGCTGGAGTTCTACACAGATTC 59.070 47.826 0.00 0.00 32.86 2.52
169 170 3.182967 GCTGGAGTTCTACACAGATTCG 58.817 50.000 0.00 0.00 32.86 3.34
170 171 3.367498 GCTGGAGTTCTACACAGATTCGT 60.367 47.826 0.00 0.00 32.86 3.85
171 172 4.169508 CTGGAGTTCTACACAGATTCGTG 58.830 47.826 6.97 6.97 42.81 4.35
172 173 3.824443 TGGAGTTCTACACAGATTCGTGA 59.176 43.478 13.15 0.84 39.34 4.35
173 174 4.082733 TGGAGTTCTACACAGATTCGTGAG 60.083 45.833 13.15 7.93 39.34 3.51
174 175 4.156190 GGAGTTCTACACAGATTCGTGAGA 59.844 45.833 13.15 9.46 39.34 3.27
175 176 5.303747 AGTTCTACACAGATTCGTGAGAG 57.696 43.478 13.15 10.18 43.69 3.20
176 177 5.004448 AGTTCTACACAGATTCGTGAGAGA 58.996 41.667 13.15 11.66 43.69 3.10
177 178 5.123186 AGTTCTACACAGATTCGTGAGAGAG 59.877 44.000 13.15 6.83 43.69 3.20
178 179 4.580868 TCTACACAGATTCGTGAGAGAGT 58.419 43.478 13.15 0.00 43.69 3.24
179 180 5.731591 TCTACACAGATTCGTGAGAGAGTA 58.268 41.667 13.15 0.00 43.69 2.59
180 181 4.955925 ACACAGATTCGTGAGAGAGTAG 57.044 45.455 13.15 0.00 43.69 2.57
181 182 3.692101 ACACAGATTCGTGAGAGAGTAGG 59.308 47.826 13.15 0.00 43.69 3.18
182 183 2.685897 ACAGATTCGTGAGAGAGTAGGC 59.314 50.000 0.00 0.00 43.69 3.93
183 184 2.948979 CAGATTCGTGAGAGAGTAGGCT 59.051 50.000 0.00 0.00 43.69 4.58
184 185 3.380004 CAGATTCGTGAGAGAGTAGGCTT 59.620 47.826 0.00 0.00 43.69 4.35
185 186 4.576873 CAGATTCGTGAGAGAGTAGGCTTA 59.423 45.833 0.00 0.00 43.69 3.09
186 187 4.819630 AGATTCGTGAGAGAGTAGGCTTAG 59.180 45.833 0.00 0.00 43.69 2.18
187 188 3.908643 TCGTGAGAGAGTAGGCTTAGA 57.091 47.619 0.00 0.00 34.84 2.10
188 189 4.425180 TCGTGAGAGAGTAGGCTTAGAT 57.575 45.455 0.00 0.00 34.84 1.98
189 190 4.783055 TCGTGAGAGAGTAGGCTTAGATT 58.217 43.478 0.00 0.00 34.84 2.40
190 191 5.194432 TCGTGAGAGAGTAGGCTTAGATTT 58.806 41.667 0.00 0.00 34.84 2.17
191 192 5.652891 TCGTGAGAGAGTAGGCTTAGATTTT 59.347 40.000 0.00 0.00 34.84 1.82
192 193 5.974751 CGTGAGAGAGTAGGCTTAGATTTTC 59.025 44.000 0.00 0.00 0.00 2.29
193 194 6.404844 CGTGAGAGAGTAGGCTTAGATTTTCA 60.405 42.308 0.00 0.00 0.00 2.69
194 195 6.978080 GTGAGAGAGTAGGCTTAGATTTTCAG 59.022 42.308 0.00 0.00 0.00 3.02
195 196 6.097554 TGAGAGAGTAGGCTTAGATTTTCAGG 59.902 42.308 0.00 0.00 0.00 3.86
196 197 5.961421 AGAGAGTAGGCTTAGATTTTCAGGT 59.039 40.000 0.00 0.00 0.00 4.00
197 198 5.983540 AGAGTAGGCTTAGATTTTCAGGTG 58.016 41.667 0.00 0.00 0.00 4.00
198 199 5.485708 AGAGTAGGCTTAGATTTTCAGGTGT 59.514 40.000 0.00 0.00 0.00 4.16
199 200 6.013293 AGAGTAGGCTTAGATTTTCAGGTGTT 60.013 38.462 0.00 0.00 0.00 3.32
200 201 5.940470 AGTAGGCTTAGATTTTCAGGTGTTG 59.060 40.000 0.00 0.00 0.00 3.33
201 202 4.082125 AGGCTTAGATTTTCAGGTGTTGG 58.918 43.478 0.00 0.00 0.00 3.77
202 203 3.826729 GGCTTAGATTTTCAGGTGTTGGT 59.173 43.478 0.00 0.00 0.00 3.67
203 204 4.321230 GGCTTAGATTTTCAGGTGTTGGTG 60.321 45.833 0.00 0.00 0.00 4.17
204 205 4.321230 GCTTAGATTTTCAGGTGTTGGTGG 60.321 45.833 0.00 0.00 0.00 4.61
205 206 2.597455 AGATTTTCAGGTGTTGGTGGG 58.403 47.619 0.00 0.00 0.00 4.61
206 207 1.618343 GATTTTCAGGTGTTGGTGGGG 59.382 52.381 0.00 0.00 0.00 4.96
207 208 0.336737 TTTTCAGGTGTTGGTGGGGT 59.663 50.000 0.00 0.00 0.00 4.95
208 209 0.336737 TTTCAGGTGTTGGTGGGGTT 59.663 50.000 0.00 0.00 0.00 4.11
209 210 0.396417 TTCAGGTGTTGGTGGGGTTG 60.396 55.000 0.00 0.00 0.00 3.77
210 211 1.076339 CAGGTGTTGGTGGGGTTGT 60.076 57.895 0.00 0.00 0.00 3.32
211 212 0.183971 CAGGTGTTGGTGGGGTTGTA 59.816 55.000 0.00 0.00 0.00 2.41
212 213 0.927767 AGGTGTTGGTGGGGTTGTAA 59.072 50.000 0.00 0.00 0.00 2.41
213 214 1.501604 AGGTGTTGGTGGGGTTGTAAT 59.498 47.619 0.00 0.00 0.00 1.89
214 215 2.090999 AGGTGTTGGTGGGGTTGTAATT 60.091 45.455 0.00 0.00 0.00 1.40
215 216 2.701423 GGTGTTGGTGGGGTTGTAATTT 59.299 45.455 0.00 0.00 0.00 1.82
216 217 3.134985 GGTGTTGGTGGGGTTGTAATTTT 59.865 43.478 0.00 0.00 0.00 1.82
217 218 4.123506 GTGTTGGTGGGGTTGTAATTTTG 58.876 43.478 0.00 0.00 0.00 2.44
218 219 3.775316 TGTTGGTGGGGTTGTAATTTTGT 59.225 39.130 0.00 0.00 0.00 2.83
219 220 4.123506 GTTGGTGGGGTTGTAATTTTGTG 58.876 43.478 0.00 0.00 0.00 3.33
220 221 2.700897 TGGTGGGGTTGTAATTTTGTGG 59.299 45.455 0.00 0.00 0.00 4.17
221 222 2.037902 GGTGGGGTTGTAATTTTGTGGG 59.962 50.000 0.00 0.00 0.00 4.61
222 223 2.037902 GTGGGGTTGTAATTTTGTGGGG 59.962 50.000 0.00 0.00 0.00 4.96
223 224 2.090719 TGGGGTTGTAATTTTGTGGGGA 60.091 45.455 0.00 0.00 0.00 4.81
224 225 3.178046 GGGGTTGTAATTTTGTGGGGAT 58.822 45.455 0.00 0.00 0.00 3.85
225 226 3.055458 GGGGTTGTAATTTTGTGGGGATG 60.055 47.826 0.00 0.00 0.00 3.51
226 227 3.580895 GGGTTGTAATTTTGTGGGGATGT 59.419 43.478 0.00 0.00 0.00 3.06
227 228 4.041075 GGGTTGTAATTTTGTGGGGATGTT 59.959 41.667 0.00 0.00 0.00 2.71
228 229 5.234752 GGTTGTAATTTTGTGGGGATGTTC 58.765 41.667 0.00 0.00 0.00 3.18
229 230 4.775058 TGTAATTTTGTGGGGATGTTCG 57.225 40.909 0.00 0.00 0.00 3.95
230 231 2.741759 AATTTTGTGGGGATGTTCGC 57.258 45.000 0.00 0.00 0.00 4.70
231 232 1.626686 ATTTTGTGGGGATGTTCGCA 58.373 45.000 0.00 0.00 0.00 5.10
232 233 1.626686 TTTTGTGGGGATGTTCGCAT 58.373 45.000 0.00 0.00 41.22 4.73
242 243 3.933155 GATGTTCGCATCCTACACAAG 57.067 47.619 0.00 0.00 46.22 3.16
243 244 2.831685 TGTTCGCATCCTACACAAGT 57.168 45.000 0.00 0.00 0.00 3.16
244 245 3.120321 TGTTCGCATCCTACACAAGTT 57.880 42.857 0.00 0.00 0.00 2.66
245 246 3.064207 TGTTCGCATCCTACACAAGTTC 58.936 45.455 0.00 0.00 0.00 3.01
246 247 3.244078 TGTTCGCATCCTACACAAGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
247 248 3.678056 TCGCATCCTACACAAGTTCTT 57.322 42.857 0.00 0.00 0.00 2.52
248 249 3.325870 TCGCATCCTACACAAGTTCTTG 58.674 45.455 10.50 10.50 0.00 3.02
249 250 3.067106 CGCATCCTACACAAGTTCTTGT 58.933 45.455 11.75 11.75 35.14 3.16
250 251 4.021807 TCGCATCCTACACAAGTTCTTGTA 60.022 41.667 16.23 3.28 33.17 2.41
251 252 4.688879 CGCATCCTACACAAGTTCTTGTAA 59.311 41.667 16.23 8.30 33.17 2.41
252 253 5.178623 CGCATCCTACACAAGTTCTTGTAAA 59.821 40.000 16.23 8.00 33.17 2.01
253 254 6.128282 CGCATCCTACACAAGTTCTTGTAAAT 60.128 38.462 16.23 8.93 33.17 1.40
254 255 7.064134 CGCATCCTACACAAGTTCTTGTAAATA 59.936 37.037 16.23 9.47 33.17 1.40
255 256 8.175716 GCATCCTACACAAGTTCTTGTAAATAC 58.824 37.037 16.23 1.30 33.17 1.89
256 257 9.436957 CATCCTACACAAGTTCTTGTAAATACT 57.563 33.333 16.23 1.02 33.17 2.12
258 259 9.485206 TCCTACACAAGTTCTTGTAAATACTTC 57.515 33.333 16.23 0.00 31.00 3.01
259 260 9.490379 CCTACACAAGTTCTTGTAAATACTTCT 57.510 33.333 16.23 0.00 31.00 2.85
262 263 9.046296 ACACAAGTTCTTGTAAATACTTCTCTG 57.954 33.333 16.23 4.30 31.00 3.35
263 264 8.012241 CACAAGTTCTTGTAAATACTTCTCTGC 58.988 37.037 16.23 0.00 31.00 4.26
264 265 7.173390 ACAAGTTCTTGTAAATACTTCTCTGCC 59.827 37.037 15.30 0.00 31.00 4.85
265 266 7.010339 AGTTCTTGTAAATACTTCTCTGCCT 57.990 36.000 0.00 0.00 0.00 4.75
266 267 7.454225 AGTTCTTGTAAATACTTCTCTGCCTT 58.546 34.615 0.00 0.00 0.00 4.35
267 268 7.604545 AGTTCTTGTAAATACTTCTCTGCCTTC 59.395 37.037 0.00 0.00 0.00 3.46
268 269 7.246171 TCTTGTAAATACTTCTCTGCCTTCT 57.754 36.000 0.00 0.00 0.00 2.85
269 270 8.362464 TCTTGTAAATACTTCTCTGCCTTCTA 57.638 34.615 0.00 0.00 0.00 2.10
270 271 8.982723 TCTTGTAAATACTTCTCTGCCTTCTAT 58.017 33.333 0.00 0.00 0.00 1.98
285 286 9.284968 TCTGCCTTCTATAAAAATAAGTATGCC 57.715 33.333 0.00 0.00 0.00 4.40
286 287 8.988546 TGCCTTCTATAAAAATAAGTATGCCA 57.011 30.769 0.00 0.00 0.00 4.92
287 288 9.586732 TGCCTTCTATAAAAATAAGTATGCCAT 57.413 29.630 0.00 0.00 0.00 4.40
307 308 9.801873 ATGCCATTTTTCATGTATTTACTACAC 57.198 29.630 0.00 0.00 43.01 2.90
308 309 8.247562 TGCCATTTTTCATGTATTTACTACACC 58.752 33.333 0.00 0.00 43.01 4.16
309 310 8.466798 GCCATTTTTCATGTATTTACTACACCT 58.533 33.333 0.00 0.00 43.01 4.00
310 311 9.787532 CCATTTTTCATGTATTTACTACACCTG 57.212 33.333 0.00 0.00 43.01 4.00
311 312 9.787532 CATTTTTCATGTATTTACTACACCTGG 57.212 33.333 0.00 0.00 43.01 4.45
312 313 7.931578 TTTTCATGTATTTACTACACCTGGG 57.068 36.000 0.00 0.00 43.01 4.45
313 314 6.877668 TTCATGTATTTACTACACCTGGGA 57.122 37.500 0.00 0.00 43.01 4.37
314 315 6.877668 TCATGTATTTACTACACCTGGGAA 57.122 37.500 0.00 0.00 43.01 3.97
315 316 7.446106 TCATGTATTTACTACACCTGGGAAT 57.554 36.000 0.00 0.00 43.01 3.01
316 317 8.555896 TCATGTATTTACTACACCTGGGAATA 57.444 34.615 0.00 0.00 43.01 1.75
317 318 8.426489 TCATGTATTTACTACACCTGGGAATAC 58.574 37.037 0.00 0.00 43.01 1.89
318 319 7.983166 TGTATTTACTACACCTGGGAATACT 57.017 36.000 0.00 0.00 35.38 2.12
319 320 8.015185 TGTATTTACTACACCTGGGAATACTC 57.985 38.462 0.00 0.00 35.38 2.59
320 321 7.842743 TGTATTTACTACACCTGGGAATACTCT 59.157 37.037 0.00 0.00 35.38 3.24
487 488 7.421530 GCTAAACACAGTAAAGATCACTGAA 57.578 36.000 16.29 0.00 45.10 3.02
488 489 8.034058 GCTAAACACAGTAAAGATCACTGAAT 57.966 34.615 16.29 3.54 45.10 2.57
489 490 9.151471 GCTAAACACAGTAAAGATCACTGAATA 57.849 33.333 16.29 5.18 45.10 1.75
528 529 3.630204 CATACATGCCCGACGAGC 58.370 61.111 0.00 0.00 0.00 5.03
543 544 0.301687 CGAGCGCGTGCAGAAATAAT 59.698 50.000 24.79 0.00 46.23 1.28
544 545 1.521006 CGAGCGCGTGCAGAAATAATA 59.479 47.619 24.79 0.00 46.23 0.98
588 589 4.200283 CGCTCCTCGCTCTGACCC 62.200 72.222 0.00 0.00 36.13 4.46
684 695 3.509575 TCTCTGCTTGTCTCCTTCTCTTC 59.490 47.826 0.00 0.00 0.00 2.87
685 696 2.564947 TCTGCTTGTCTCCTTCTCTTCC 59.435 50.000 0.00 0.00 0.00 3.46
686 697 1.625818 TGCTTGTCTCCTTCTCTTCCC 59.374 52.381 0.00 0.00 0.00 3.97
687 698 1.905894 GCTTGTCTCCTTCTCTTCCCT 59.094 52.381 0.00 0.00 0.00 4.20
688 699 2.354604 GCTTGTCTCCTTCTCTTCCCTG 60.355 54.545 0.00 0.00 0.00 4.45
689 700 1.270907 TGTCTCCTTCTCTTCCCTGC 58.729 55.000 0.00 0.00 0.00 4.85
690 701 0.539518 GTCTCCTTCTCTTCCCTGCC 59.460 60.000 0.00 0.00 0.00 4.85
691 702 0.618968 TCTCCTTCTCTTCCCTGCCC 60.619 60.000 0.00 0.00 0.00 5.36
692 703 0.620121 CTCCTTCTCTTCCCTGCCCT 60.620 60.000 0.00 0.00 0.00 5.19
693 704 0.911525 TCCTTCTCTTCCCTGCCCTG 60.912 60.000 0.00 0.00 0.00 4.45
721 732 4.507916 TCCTCCCGCTCCTCTCCG 62.508 72.222 0.00 0.00 0.00 4.63
734 749 2.435586 CTCCGTCTGCTTGGCCTG 60.436 66.667 3.32 0.00 0.00 4.85
763 778 2.420129 CCCGTCTATTTAAGCCTGCTGT 60.420 50.000 0.00 0.00 0.00 4.40
766 781 3.799420 CGTCTATTTAAGCCTGCTGTCTC 59.201 47.826 0.00 0.00 0.00 3.36
794 809 5.708948 TGTTAATTGGATTTCTCCTTTGCG 58.291 37.500 0.00 0.00 42.59 4.85
834 857 1.968540 GCAGCGAGCCAAAACCTCT 60.969 57.895 0.00 0.00 37.23 3.69
838 861 1.916697 GCGAGCCAAAACCTCTGAGC 61.917 60.000 0.00 0.00 0.00 4.26
840 864 0.250901 GAGCCAAAACCTCTGAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
842 866 1.856265 GCCAAAACCTCTGAGCCACG 61.856 60.000 0.00 0.00 0.00 4.94
847 871 4.767255 CCTCTGAGCCACGGCCAC 62.767 72.222 2.24 0.00 43.17 5.01
848 872 4.767255 CTCTGAGCCACGGCCACC 62.767 72.222 2.24 0.00 43.17 4.61
940 964 2.411160 GGAAACGAAGCGACTTTGCTAC 60.411 50.000 0.00 0.66 46.60 3.58
952 976 4.235360 GACTTTGCTACTAGCTTCGTGAA 58.765 43.478 9.49 0.00 42.97 3.18
1062 1086 1.004560 CCCGCTGCAGAACTTCTCA 60.005 57.895 20.43 0.00 0.00 3.27
1627 1666 1.967535 CACAAGGACCTGCTCTCGA 59.032 57.895 0.00 0.00 0.00 4.04
1807 1852 4.712425 CCACCGACGACGACACCC 62.712 72.222 9.28 0.00 42.66 4.61
1860 1905 3.378399 GAAGAGCAGCCCGGACTCC 62.378 68.421 0.73 0.00 0.00 3.85
2274 2463 1.373748 GTGCGACGGCTTCAAGGTA 60.374 57.895 0.00 0.00 40.82 3.08
2400 2615 3.181430 TGTCACCACTACTAGTACCACCA 60.181 47.826 0.00 0.00 0.00 4.17
2401 2616 3.192212 GTCACCACTACTAGTACCACCAC 59.808 52.174 0.00 0.00 0.00 4.16
2402 2617 3.159472 CACCACTACTAGTACCACCACA 58.841 50.000 0.00 0.00 0.00 4.17
2440 2655 2.035632 AGCTAGCTAGGCGTTTCATCT 58.964 47.619 17.69 4.54 34.52 2.90
2441 2656 2.432510 AGCTAGCTAGGCGTTTCATCTT 59.567 45.455 17.69 0.00 34.52 2.40
2442 2657 2.797719 GCTAGCTAGGCGTTTCATCTTC 59.202 50.000 22.10 0.00 0.00 2.87
2443 2658 3.738281 GCTAGCTAGGCGTTTCATCTTCA 60.738 47.826 22.10 0.00 0.00 3.02
2444 2659 3.550437 AGCTAGGCGTTTCATCTTCAT 57.450 42.857 0.00 0.00 0.00 2.57
2445 2660 3.462021 AGCTAGGCGTTTCATCTTCATC 58.538 45.455 0.00 0.00 0.00 2.92
2446 2661 3.118629 AGCTAGGCGTTTCATCTTCATCA 60.119 43.478 0.00 0.00 0.00 3.07
2447 2662 3.812053 GCTAGGCGTTTCATCTTCATCAT 59.188 43.478 0.00 0.00 0.00 2.45
2448 2663 4.084118 GCTAGGCGTTTCATCTTCATCATC 60.084 45.833 0.00 0.00 0.00 2.92
2474 2689 9.282247 CACATCTAAAATTCCATTTCTTCTTCG 57.718 33.333 0.00 0.00 0.00 3.79
2544 2770 1.661509 GCGCTGCTTGTTTTGGACC 60.662 57.895 0.00 0.00 0.00 4.46
2545 2771 1.732917 CGCTGCTTGTTTTGGACCA 59.267 52.632 0.00 0.00 0.00 4.02
2583 2818 1.630244 GCATGCTCCGTGTGTCTGTC 61.630 60.000 11.37 0.00 0.00 3.51
2588 2823 1.736032 GCTCCGTGTGTCTGTCCATAC 60.736 57.143 0.00 0.00 0.00 2.39
2590 2825 1.544246 TCCGTGTGTCTGTCCATACTG 59.456 52.381 0.00 0.00 0.00 2.74
2594 2829 1.202348 TGTGTCTGTCCATACTGCTCG 59.798 52.381 0.00 0.00 0.00 5.03
2595 2830 1.202582 GTGTCTGTCCATACTGCTCGT 59.797 52.381 0.00 0.00 0.00 4.18
2596 2831 1.202348 TGTCTGTCCATACTGCTCGTG 59.798 52.381 0.00 0.00 0.00 4.35
2597 2832 1.202582 GTCTGTCCATACTGCTCGTGT 59.797 52.381 0.00 0.00 0.00 4.49
2598 2833 1.202348 TCTGTCCATACTGCTCGTGTG 59.798 52.381 0.00 0.00 34.81 3.82
2599 2834 0.966179 TGTCCATACTGCTCGTGTGT 59.034 50.000 3.66 0.00 33.34 3.72
2600 2835 1.336795 TGTCCATACTGCTCGTGTGTG 60.337 52.381 3.66 0.00 33.34 3.82
2601 2836 0.966179 TCCATACTGCTCGTGTGTGT 59.034 50.000 3.66 0.00 33.34 3.72
2602 2837 1.070821 CCATACTGCTCGTGTGTGTG 58.929 55.000 3.66 0.00 33.34 3.82
2603 2838 1.605457 CCATACTGCTCGTGTGTGTGT 60.605 52.381 3.66 0.00 33.34 3.72
2604 2839 1.456923 CATACTGCTCGTGTGTGTGTG 59.543 52.381 0.00 0.00 30.88 3.82
2605 2840 0.458260 TACTGCTCGTGTGTGTGTGT 59.542 50.000 0.00 0.00 0.00 3.72
2606 2841 1.083806 ACTGCTCGTGTGTGTGTGTG 61.084 55.000 0.00 0.00 0.00 3.82
2607 2842 1.079474 TGCTCGTGTGTGTGTGTGT 60.079 52.632 0.00 0.00 0.00 3.72
2616 2851 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
2624 2859 1.228154 GTGTGTGTGTCCCTTCCCC 60.228 63.158 0.00 0.00 0.00 4.81
2626 2867 1.073199 GTGTGTGTCCCTTCCCCTG 59.927 63.158 0.00 0.00 0.00 4.45
2638 2879 0.326927 TTCCCCTGTTGGTTCGGATC 59.673 55.000 0.00 0.00 0.00 3.36
2645 2886 0.517316 GTTGGTTCGGATCAGTGCAC 59.483 55.000 9.40 9.40 0.00 4.57
2652 2893 2.621338 TCGGATCAGTGCACAGATTTC 58.379 47.619 23.63 17.52 0.00 2.17
2653 2894 2.028203 TCGGATCAGTGCACAGATTTCA 60.028 45.455 23.63 9.41 0.00 2.69
2671 2912 2.995283 TCAGCAGGAATGATGAAGTGG 58.005 47.619 0.00 0.00 30.72 4.00
2678 2919 3.134458 GGAATGATGAAGTGGTCGATCC 58.866 50.000 0.00 0.00 0.00 3.36
2695 2953 0.249868 TCCATGCGGATTGGATCGTC 60.250 55.000 4.43 0.00 38.35 4.20
2717 2975 8.380867 TCGTCTGGTGGTTTATCTATCTATCTA 58.619 37.037 0.00 0.00 0.00 1.98
2718 2976 9.011095 CGTCTGGTGGTTTATCTATCTATCTAA 57.989 37.037 0.00 0.00 0.00 2.10
2750 3008 8.879342 ATCTATATTTCCATTCGATCGAATCC 57.121 34.615 34.40 0.00 42.30 3.01
2751 3009 8.067751 TCTATATTTCCATTCGATCGAATCCT 57.932 34.615 34.40 17.35 42.30 3.24
2842 3113 1.089920 AATTGTGAGCCGCATGACTC 58.910 50.000 0.00 0.00 0.00 3.36
2849 3120 0.671781 AGCCGCATGACTCACAAGAC 60.672 55.000 0.00 0.00 0.00 3.01
2860 3131 1.998315 CTCACAAGACGGCTGATTGAG 59.002 52.381 18.05 9.08 0.00 3.02
2867 3138 3.070018 AGACGGCTGATTGAGAACTTTG 58.930 45.455 0.00 0.00 0.00 2.77
2870 3141 3.632145 ACGGCTGATTGAGAACTTTGTTT 59.368 39.130 0.00 0.00 0.00 2.83
2912 3187 1.078848 GACGCCAGTTGATGCCTCT 60.079 57.895 0.00 0.00 0.00 3.69
2918 3193 0.742281 CAGTTGATGCCTCTGGTCGG 60.742 60.000 0.00 0.00 0.00 4.79
2921 3196 0.465705 TTGATGCCTCTGGTCGGATC 59.534 55.000 0.00 0.00 0.00 3.36
2930 3208 0.174845 CTGGTCGGATCCAACGCTTA 59.825 55.000 13.41 0.00 37.01 3.09
2955 3233 7.758495 ACGTCTTGTTAACTTTGTTGAAATCT 58.242 30.769 7.22 0.00 0.00 2.40
2956 3234 8.885722 ACGTCTTGTTAACTTTGTTGAAATCTA 58.114 29.630 7.22 0.00 0.00 1.98
2957 3235 9.155053 CGTCTTGTTAACTTTGTTGAAATCTAC 57.845 33.333 7.22 0.00 0.00 2.59
2958 3236 9.155053 GTCTTGTTAACTTTGTTGAAATCTACG 57.845 33.333 7.22 0.00 0.00 3.51
2986 3264 3.442625 GTCGGGTTAAGGGGAGAAATTTG 59.557 47.826 0.00 0.00 0.00 2.32
2988 3266 3.830178 CGGGTTAAGGGGAGAAATTTGTT 59.170 43.478 0.00 0.00 0.00 2.83
2991 3269 4.283467 GGTTAAGGGGAGAAATTTGTTGCT 59.717 41.667 0.00 0.00 0.00 3.91
2992 3270 5.221641 GGTTAAGGGGAGAAATTTGTTGCTT 60.222 40.000 0.00 0.00 0.00 3.91
2993 3271 4.341366 AAGGGGAGAAATTTGTTGCTTG 57.659 40.909 0.00 0.00 0.00 4.01
2994 3272 2.037641 AGGGGAGAAATTTGTTGCTTGC 59.962 45.455 0.00 0.00 0.00 4.01
2995 3273 2.061028 GGGAGAAATTTGTTGCTTGCG 58.939 47.619 0.00 0.00 0.00 4.85
3043 3321 1.597461 GTACTGCACCTCTGGGGAC 59.403 63.158 0.00 0.00 38.76 4.46
3059 3337 1.664873 GGACCTTCCGCTATGTTTCC 58.335 55.000 0.00 0.00 0.00 3.13
3060 3338 1.065709 GGACCTTCCGCTATGTTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
3061 3339 2.280628 GACCTTCCGCTATGTTTCCAG 58.719 52.381 0.00 0.00 0.00 3.86
3069 3348 1.804151 GCTATGTTTCCAGTTCACGCA 59.196 47.619 0.00 0.00 0.00 5.24
3082 3361 5.512788 CCAGTTCACGCATGATTTTTCATAC 59.487 40.000 0.00 0.00 33.85 2.39
3083 3362 6.317088 CAGTTCACGCATGATTTTTCATACT 58.683 36.000 0.00 0.00 33.85 2.12
3085 3364 7.426456 CAGTTCACGCATGATTTTTCATACTAC 59.574 37.037 0.00 0.00 33.85 2.73
3086 3365 7.334421 AGTTCACGCATGATTTTTCATACTACT 59.666 33.333 0.00 0.00 33.85 2.57
3089 3368 8.511321 TCACGCATGATTTTTCATACTACTTTT 58.489 29.630 0.00 0.00 0.00 2.27
3150 3436 0.529378 CCAAAACTGATCCTGCTGGC 59.471 55.000 4.42 0.00 0.00 4.85
3151 3437 1.542492 CAAAACTGATCCTGCTGGCT 58.458 50.000 4.42 0.00 0.00 4.75
3152 3438 1.201647 CAAAACTGATCCTGCTGGCTG 59.798 52.381 4.42 0.00 0.00 4.85
3159 3445 2.349100 ATCCTGCTGGCTGGGCATAC 62.349 60.000 16.37 0.00 39.07 2.39
3160 3446 2.898840 CTGCTGGCTGGGCATACG 60.899 66.667 0.00 0.00 39.07 3.06
3161 3447 3.687321 CTGCTGGCTGGGCATACGT 62.687 63.158 0.00 0.00 39.07 3.57
3184 3470 2.772568 TTTTGACAAGTGTGCGATGG 57.227 45.000 0.00 0.00 0.00 3.51
3215 3503 0.179051 GAGCCATCTTGGAGCTGGAG 60.179 60.000 0.00 0.00 40.96 3.86
3216 3504 0.913451 AGCCATCTTGGAGCTGGAGT 60.913 55.000 0.00 0.00 40.96 3.85
3217 3505 0.747283 GCCATCTTGGAGCTGGAGTG 60.747 60.000 0.00 0.00 40.96 3.51
3220 3508 0.908198 ATCTTGGAGCTGGAGTGGAC 59.092 55.000 0.00 0.00 0.00 4.02
3221 3509 0.471780 TCTTGGAGCTGGAGTGGACA 60.472 55.000 0.00 0.00 0.00 4.02
3222 3510 0.321122 CTTGGAGCTGGAGTGGACAC 60.321 60.000 0.00 0.00 0.00 3.67
3223 3511 2.099652 TTGGAGCTGGAGTGGACACG 62.100 60.000 0.00 0.00 36.20 4.49
3230 3518 2.103042 GGAGTGGACACGAGCATGC 61.103 63.158 10.51 10.51 36.20 4.06
3253 3541 4.067896 CACTGTTCTCCAATTAGTGCACT 58.932 43.478 25.12 25.12 33.28 4.40
3269 3557 2.532854 ACTGCACAGTGGAGGAGTT 58.467 52.632 24.49 2.10 40.38 3.01
3300 3588 2.047560 GGTTCCCCGTCTTGTCCG 60.048 66.667 0.00 0.00 0.00 4.79
3302 3590 1.373873 GTTCCCCGTCTTGTCCGTC 60.374 63.158 0.00 0.00 0.00 4.79
3303 3591 2.576832 TTCCCCGTCTTGTCCGTCC 61.577 63.158 0.00 0.00 0.00 4.79
3304 3592 2.995574 CCCCGTCTTGTCCGTCCT 60.996 66.667 0.00 0.00 0.00 3.85
3305 3593 2.580601 CCCCGTCTTGTCCGTCCTT 61.581 63.158 0.00 0.00 0.00 3.36
3306 3594 1.374252 CCCGTCTTGTCCGTCCTTG 60.374 63.158 0.00 0.00 0.00 3.61
3307 3595 1.366366 CCGTCTTGTCCGTCCTTGT 59.634 57.895 0.00 0.00 0.00 3.16
3308 3596 0.944311 CCGTCTTGTCCGTCCTTGTG 60.944 60.000 0.00 0.00 0.00 3.33
3332 3620 2.601367 GCAACAGGTGGCCATGGT 60.601 61.111 9.72 0.00 0.00 3.55
3333 3621 2.209315 GCAACAGGTGGCCATGGTT 61.209 57.895 9.72 11.39 0.00 3.67
3334 3622 1.667151 CAACAGGTGGCCATGGTTG 59.333 57.895 23.72 23.72 33.73 3.77
3335 3623 1.533753 AACAGGTGGCCATGGTTGG 60.534 57.895 9.72 0.00 46.66 3.77
3336 3624 2.017668 AACAGGTGGCCATGGTTGGA 62.018 55.000 9.72 0.00 46.92 3.53
3337 3625 1.000739 CAGGTGGCCATGGTTGGAT 59.999 57.895 9.72 0.00 46.92 3.41
3338 3626 1.039233 CAGGTGGCCATGGTTGGATC 61.039 60.000 9.72 0.00 46.92 3.36
3339 3627 1.758122 GGTGGCCATGGTTGGATCC 60.758 63.158 9.72 4.20 46.92 3.36
3340 3628 1.000233 GTGGCCATGGTTGGATCCA 60.000 57.895 11.44 11.44 46.92 3.41
3341 3629 0.397535 GTGGCCATGGTTGGATCCAT 60.398 55.000 17.06 0.00 46.92 3.41
3342 3630 0.106066 TGGCCATGGTTGGATCCATC 60.106 55.000 17.06 15.10 46.92 3.51
3343 3631 0.829182 GGCCATGGTTGGATCCATCC 60.829 60.000 28.50 28.50 46.92 3.51
3351 3639 2.750350 GGATCCATCCGCGGGATT 59.250 61.111 27.83 7.94 45.05 3.01
3352 3640 1.073199 GGATCCATCCGCGGGATTT 59.927 57.895 27.83 6.78 45.05 2.17
3353 3641 0.537371 GGATCCATCCGCGGGATTTT 60.537 55.000 27.83 8.01 45.05 1.82
3354 3642 0.875059 GATCCATCCGCGGGATTTTC 59.125 55.000 27.83 13.59 45.05 2.29
3355 3643 0.182537 ATCCATCCGCGGGATTTTCA 59.817 50.000 27.83 3.54 42.47 2.69
3356 3644 0.182537 TCCATCCGCGGGATTTTCAT 59.817 50.000 27.83 6.33 39.79 2.57
3357 3645 0.593128 CCATCCGCGGGATTTTCATC 59.407 55.000 27.83 0.00 39.79 2.92
3358 3646 1.597742 CATCCGCGGGATTTTCATCT 58.402 50.000 27.83 0.00 39.79 2.90
3359 3647 1.265095 CATCCGCGGGATTTTCATCTG 59.735 52.381 27.83 3.80 39.79 2.90
3360 3648 0.463654 TCCGCGGGATTTTCATCTGG 60.464 55.000 27.83 0.00 0.00 3.86
3361 3649 0.463654 CCGCGGGATTTTCATCTGGA 60.464 55.000 20.10 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.368116 GGTGTCTGCCGTGACTAAAGTAT 60.368 47.826 0.00 0.00 37.79 2.12
4 5 1.270147 GGTGTCTGCCGTGACTAAAGT 60.270 52.381 0.00 0.00 37.79 2.66
5 6 1.000955 AGGTGTCTGCCGTGACTAAAG 59.999 52.381 0.00 0.00 37.79 1.85
6 7 1.045407 AGGTGTCTGCCGTGACTAAA 58.955 50.000 0.00 0.00 37.79 1.85
7 8 0.317160 CAGGTGTCTGCCGTGACTAA 59.683 55.000 0.00 0.00 37.79 2.24
8 9 1.532604 CCAGGTGTCTGCCGTGACTA 61.533 60.000 0.00 0.00 39.61 2.59
9 10 2.737180 CAGGTGTCTGCCGTGACT 59.263 61.111 0.00 0.00 37.79 3.41
10 11 2.357517 CCAGGTGTCTGCCGTGAC 60.358 66.667 0.00 0.00 39.61 3.67
11 12 3.625897 CCCAGGTGTCTGCCGTGA 61.626 66.667 0.00 0.00 39.61 4.35
12 13 3.177194 TTCCCAGGTGTCTGCCGTG 62.177 63.158 0.00 0.00 39.61 4.94
13 14 2.847234 TTCCCAGGTGTCTGCCGT 60.847 61.111 0.00 0.00 39.61 5.68
14 15 2.358737 GTTCCCAGGTGTCTGCCG 60.359 66.667 0.00 0.00 39.61 5.69
15 16 1.302832 CAGTTCCCAGGTGTCTGCC 60.303 63.158 0.00 0.00 39.61 4.85
16 17 0.886490 CACAGTTCCCAGGTGTCTGC 60.886 60.000 0.00 0.00 39.61 4.26
17 18 0.250467 CCACAGTTCCCAGGTGTCTG 60.250 60.000 0.00 0.00 40.59 3.51
18 19 0.399949 TCCACAGTTCCCAGGTGTCT 60.400 55.000 0.00 0.00 0.00 3.41
19 20 0.035458 CTCCACAGTTCCCAGGTGTC 59.965 60.000 0.00 0.00 0.00 3.67
20 21 1.418908 CCTCCACAGTTCCCAGGTGT 61.419 60.000 0.00 0.00 0.00 4.16
21 22 1.376466 CCTCCACAGTTCCCAGGTG 59.624 63.158 0.00 0.00 0.00 4.00
22 23 2.529744 GCCTCCACAGTTCCCAGGT 61.530 63.158 0.00 0.00 0.00 4.00
23 24 2.067932 TTGCCTCCACAGTTCCCAGG 62.068 60.000 0.00 0.00 0.00 4.45
24 25 0.890996 GTTGCCTCCACAGTTCCCAG 60.891 60.000 0.00 0.00 0.00 4.45
25 26 1.150536 GTTGCCTCCACAGTTCCCA 59.849 57.895 0.00 0.00 0.00 4.37
26 27 1.966451 CGTTGCCTCCACAGTTCCC 60.966 63.158 0.00 0.00 0.00 3.97
27 28 2.617274 GCGTTGCCTCCACAGTTCC 61.617 63.158 0.00 0.00 0.00 3.62
28 29 1.444119 TTGCGTTGCCTCCACAGTTC 61.444 55.000 0.00 0.00 0.00 3.01
29 30 1.453015 TTGCGTTGCCTCCACAGTT 60.453 52.632 0.00 0.00 0.00 3.16
30 31 2.186826 GTTGCGTTGCCTCCACAGT 61.187 57.895 0.00 0.00 0.00 3.55
31 32 2.639286 GTTGCGTTGCCTCCACAG 59.361 61.111 0.00 0.00 0.00 3.66
32 33 3.276091 CGTTGCGTTGCCTCCACA 61.276 61.111 0.00 0.00 0.00 4.17
33 34 4.683334 GCGTTGCGTTGCCTCCAC 62.683 66.667 0.00 0.00 0.00 4.02
39 40 0.455972 ACATTATGGCGTTGCGTTGC 60.456 50.000 0.00 0.00 0.00 4.17
40 41 1.975837 AACATTATGGCGTTGCGTTG 58.024 45.000 0.00 0.00 0.00 4.10
41 42 2.715737 AAACATTATGGCGTTGCGTT 57.284 40.000 0.00 0.00 0.00 4.84
42 43 3.494232 GTTAAACATTATGGCGTTGCGT 58.506 40.909 0.00 0.00 0.00 5.24
43 44 2.849473 GGTTAAACATTATGGCGTTGCG 59.151 45.455 0.00 0.00 0.00 4.85
44 45 2.849473 CGGTTAAACATTATGGCGTTGC 59.151 45.455 0.00 0.00 0.00 4.17
45 46 2.849473 GCGGTTAAACATTATGGCGTTG 59.151 45.455 0.00 0.00 0.00 4.10
46 47 2.476519 CGCGGTTAAACATTATGGCGTT 60.477 45.455 0.00 0.00 37.82 4.84
47 48 1.062880 CGCGGTTAAACATTATGGCGT 59.937 47.619 0.00 0.00 37.82 5.68
48 49 1.737249 CGCGGTTAAACATTATGGCG 58.263 50.000 0.00 0.00 36.29 5.69
49 50 1.202200 TGCGCGGTTAAACATTATGGC 60.202 47.619 8.83 0.00 0.00 4.40
50 51 2.353269 TCTGCGCGGTTAAACATTATGG 59.647 45.455 17.37 0.00 0.00 2.74
51 52 3.666883 TCTGCGCGGTTAAACATTATG 57.333 42.857 17.37 0.00 0.00 1.90
52 53 3.874543 TGATCTGCGCGGTTAAACATTAT 59.125 39.130 17.37 0.00 0.00 1.28
53 54 3.263261 TGATCTGCGCGGTTAAACATTA 58.737 40.909 17.37 0.00 0.00 1.90
54 55 2.080693 TGATCTGCGCGGTTAAACATT 58.919 42.857 17.37 0.00 0.00 2.71
55 56 1.732941 TGATCTGCGCGGTTAAACAT 58.267 45.000 17.37 0.00 0.00 2.71
56 57 1.195900 GTTGATCTGCGCGGTTAAACA 59.804 47.619 18.81 9.96 0.00 2.83
57 58 1.195900 TGTTGATCTGCGCGGTTAAAC 59.804 47.619 17.37 17.40 0.00 2.01
58 59 1.514003 TGTTGATCTGCGCGGTTAAA 58.486 45.000 17.37 4.33 0.00 1.52
59 60 1.514003 TTGTTGATCTGCGCGGTTAA 58.486 45.000 17.37 7.26 0.00 2.01
60 61 1.514003 TTTGTTGATCTGCGCGGTTA 58.486 45.000 17.37 0.00 0.00 2.85
61 62 0.881118 ATTTGTTGATCTGCGCGGTT 59.119 45.000 17.37 8.04 0.00 4.44
62 63 0.168788 CATTTGTTGATCTGCGCGGT 59.831 50.000 17.37 3.28 0.00 5.68
63 64 0.168788 ACATTTGTTGATCTGCGCGG 59.831 50.000 10.86 10.86 0.00 6.46
64 65 1.136000 TGACATTTGTTGATCTGCGCG 60.136 47.619 0.00 0.00 0.00 6.86
65 66 2.095567 ACTGACATTTGTTGATCTGCGC 60.096 45.455 0.00 0.00 0.00 6.09
66 67 3.818961 ACTGACATTTGTTGATCTGCG 57.181 42.857 0.00 0.00 0.00 5.18
67 68 3.671928 GCAACTGACATTTGTTGATCTGC 59.328 43.478 9.55 0.00 44.29 4.26
68 69 4.678287 GTGCAACTGACATTTGTTGATCTG 59.322 41.667 9.55 0.00 44.29 2.90
69 70 4.338964 TGTGCAACTGACATTTGTTGATCT 59.661 37.500 9.55 0.00 44.29 2.75
70 71 4.609947 TGTGCAACTGACATTTGTTGATC 58.390 39.130 9.55 0.00 44.29 2.92
71 72 4.652421 TGTGCAACTGACATTTGTTGAT 57.348 36.364 9.55 0.00 44.29 2.57
72 73 4.172505 GTTGTGCAACTGACATTTGTTGA 58.827 39.130 9.55 0.00 44.29 3.18
73 74 4.503767 GTTGTGCAACTGACATTTGTTG 57.496 40.909 7.72 4.84 44.33 3.33
85 86 1.290009 GCCCATGGAGTTGTGCAAC 59.710 57.895 15.22 6.94 41.45 4.17
86 87 1.152589 TGCCCATGGAGTTGTGCAA 60.153 52.632 15.22 0.00 0.00 4.08
87 88 1.902918 GTGCCCATGGAGTTGTGCA 60.903 57.895 15.22 10.41 0.00 4.57
88 89 1.252904 ATGTGCCCATGGAGTTGTGC 61.253 55.000 15.22 7.45 0.00 4.57
89 90 0.813184 GATGTGCCCATGGAGTTGTG 59.187 55.000 15.22 0.00 0.00 3.33
90 91 0.323725 GGATGTGCCCATGGAGTTGT 60.324 55.000 15.22 0.00 0.00 3.32
91 92 0.033796 AGGATGTGCCCATGGAGTTG 60.034 55.000 15.22 0.00 37.37 3.16
92 93 0.033796 CAGGATGTGCCCATGGAGTT 60.034 55.000 15.22 0.00 37.37 3.01
93 94 1.611419 CAGGATGTGCCCATGGAGT 59.389 57.895 15.22 0.00 37.37 3.85
94 95 1.152819 CCAGGATGTGCCCATGGAG 60.153 63.158 15.22 4.39 37.37 3.86
95 96 0.995132 ATCCAGGATGTGCCCATGGA 60.995 55.000 15.22 0.00 37.37 3.41
96 97 0.826256 CATCCAGGATGTGCCCATGG 60.826 60.000 20.30 4.14 35.54 3.66
97 98 0.184211 TCATCCAGGATGTGCCCATG 59.816 55.000 26.14 2.77 40.55 3.66
98 99 0.477204 CTCATCCAGGATGTGCCCAT 59.523 55.000 26.14 0.00 40.55 4.00
99 100 0.621280 TCTCATCCAGGATGTGCCCA 60.621 55.000 26.14 8.29 40.55 5.36
100 101 0.769873 ATCTCATCCAGGATGTGCCC 59.230 55.000 26.14 0.00 40.55 5.36
101 102 1.419012 TGATCTCATCCAGGATGTGCC 59.581 52.381 26.14 18.42 40.55 5.01
102 103 2.924757 TGATCTCATCCAGGATGTGC 57.075 50.000 26.14 13.82 40.55 4.57
103 104 3.741249 CCTTGATCTCATCCAGGATGTG 58.259 50.000 26.14 23.62 43.12 3.21
104 105 2.106166 GCCTTGATCTCATCCAGGATGT 59.894 50.000 26.14 9.86 43.12 3.06
105 106 2.105993 TGCCTTGATCTCATCCAGGATG 59.894 50.000 22.28 22.28 43.12 3.51
106 107 2.415624 TGCCTTGATCTCATCCAGGAT 58.584 47.619 7.64 0.00 43.12 3.24
107 108 1.883678 TGCCTTGATCTCATCCAGGA 58.116 50.000 7.64 0.00 43.12 3.86
108 109 2.505405 CATGCCTTGATCTCATCCAGG 58.495 52.381 0.00 0.16 43.27 4.45
109 110 2.105993 TCCATGCCTTGATCTCATCCAG 59.894 50.000 0.00 0.00 0.00 3.86
110 111 2.129363 TCCATGCCTTGATCTCATCCA 58.871 47.619 0.00 0.00 0.00 3.41
111 112 2.945080 TCCATGCCTTGATCTCATCC 57.055 50.000 0.00 0.00 0.00 3.51
112 113 3.147629 CCTTCCATGCCTTGATCTCATC 58.852 50.000 0.00 0.00 0.00 2.92
113 114 2.781757 TCCTTCCATGCCTTGATCTCAT 59.218 45.455 0.00 0.00 0.00 2.90
114 115 2.199208 TCCTTCCATGCCTTGATCTCA 58.801 47.619 0.00 0.00 0.00 3.27
115 116 3.212685 CTTCCTTCCATGCCTTGATCTC 58.787 50.000 0.00 0.00 0.00 2.75
116 117 2.686118 GCTTCCTTCCATGCCTTGATCT 60.686 50.000 0.00 0.00 0.00 2.75
117 118 1.680207 GCTTCCTTCCATGCCTTGATC 59.320 52.381 0.00 0.00 0.00 2.92
118 119 1.687368 GGCTTCCTTCCATGCCTTGAT 60.687 52.381 0.00 0.00 41.92 2.57
119 120 0.323725 GGCTTCCTTCCATGCCTTGA 60.324 55.000 0.00 0.00 41.92 3.02
120 121 1.660560 CGGCTTCCTTCCATGCCTTG 61.661 60.000 0.00 0.00 42.90 3.61
121 122 1.379044 CGGCTTCCTTCCATGCCTT 60.379 57.895 0.00 0.00 42.90 4.35
122 123 2.273449 CGGCTTCCTTCCATGCCT 59.727 61.111 0.00 0.00 42.90 4.75
123 124 2.830370 CCGGCTTCCTTCCATGCC 60.830 66.667 0.00 0.00 41.76 4.40
124 125 2.044946 ACCGGCTTCCTTCCATGC 60.045 61.111 0.00 0.00 0.00 4.06
125 126 1.002134 ACACCGGCTTCCTTCCATG 60.002 57.895 0.00 0.00 0.00 3.66
126 127 1.002134 CACACCGGCTTCCTTCCAT 60.002 57.895 0.00 0.00 0.00 3.41
127 128 2.429930 CACACCGGCTTCCTTCCA 59.570 61.111 0.00 0.00 0.00 3.53
128 129 2.359975 CCACACCGGCTTCCTTCC 60.360 66.667 0.00 0.00 0.00 3.46
129 130 2.359975 CCCACACCGGCTTCCTTC 60.360 66.667 0.00 0.00 0.00 3.46
130 131 3.175710 ACCCACACCGGCTTCCTT 61.176 61.111 0.00 0.00 0.00 3.36
131 132 3.953775 CACCCACACCGGCTTCCT 61.954 66.667 0.00 0.00 0.00 3.36
133 134 4.643387 AGCACCCACACCGGCTTC 62.643 66.667 0.00 0.00 31.34 3.86
134 135 4.954970 CAGCACCCACACCGGCTT 62.955 66.667 0.00 0.00 33.60 4.35
137 138 4.704833 CTCCAGCACCCACACCGG 62.705 72.222 0.00 0.00 0.00 5.28
138 139 3.476031 AACTCCAGCACCCACACCG 62.476 63.158 0.00 0.00 0.00 4.94
139 140 1.600916 GAACTCCAGCACCCACACC 60.601 63.158 0.00 0.00 0.00 4.16
140 141 0.685097 TAGAACTCCAGCACCCACAC 59.315 55.000 0.00 0.00 0.00 3.82
141 142 0.685097 GTAGAACTCCAGCACCCACA 59.315 55.000 0.00 0.00 0.00 4.17
142 143 0.685097 TGTAGAACTCCAGCACCCAC 59.315 55.000 0.00 0.00 0.00 4.61
143 144 0.685097 GTGTAGAACTCCAGCACCCA 59.315 55.000 0.00 0.00 0.00 4.51
144 145 0.685097 TGTGTAGAACTCCAGCACCC 59.315 55.000 0.00 0.00 0.00 4.61
145 146 1.618837 TCTGTGTAGAACTCCAGCACC 59.381 52.381 0.00 0.00 0.00 5.01
146 147 3.601443 ATCTGTGTAGAACTCCAGCAC 57.399 47.619 0.00 0.00 36.32 4.40
147 148 3.367395 CGAATCTGTGTAGAACTCCAGCA 60.367 47.826 0.00 0.00 36.32 4.41
148 149 3.182967 CGAATCTGTGTAGAACTCCAGC 58.817 50.000 0.00 0.00 36.32 4.85
149 150 4.082733 TCACGAATCTGTGTAGAACTCCAG 60.083 45.833 0.00 0.00 40.74 3.86
150 151 3.824443 TCACGAATCTGTGTAGAACTCCA 59.176 43.478 0.00 0.00 40.74 3.86
151 152 4.156190 TCTCACGAATCTGTGTAGAACTCC 59.844 45.833 0.00 0.00 40.74 3.85
152 153 5.122554 TCTCTCACGAATCTGTGTAGAACTC 59.877 44.000 0.00 0.00 40.74 3.01
153 154 5.004448 TCTCTCACGAATCTGTGTAGAACT 58.996 41.667 0.00 0.00 40.74 3.01
154 155 5.106475 ACTCTCTCACGAATCTGTGTAGAAC 60.106 44.000 0.00 0.00 40.74 3.01
155 156 5.004448 ACTCTCTCACGAATCTGTGTAGAA 58.996 41.667 0.00 1.16 40.74 2.10
156 157 4.580868 ACTCTCTCACGAATCTGTGTAGA 58.419 43.478 0.00 8.12 40.74 2.59
157 158 4.955925 ACTCTCTCACGAATCTGTGTAG 57.044 45.455 0.00 5.25 40.74 2.74
158 159 4.876679 CCTACTCTCTCACGAATCTGTGTA 59.123 45.833 0.00 0.00 40.74 2.90
159 160 3.692101 CCTACTCTCTCACGAATCTGTGT 59.308 47.826 0.00 0.00 40.74 3.72
160 161 3.488384 GCCTACTCTCTCACGAATCTGTG 60.488 52.174 0.00 0.13 41.28 3.66
161 162 2.685897 GCCTACTCTCTCACGAATCTGT 59.314 50.000 0.00 0.00 0.00 3.41
162 163 2.948979 AGCCTACTCTCTCACGAATCTG 59.051 50.000 0.00 0.00 0.00 2.90
163 164 3.290948 AGCCTACTCTCTCACGAATCT 57.709 47.619 0.00 0.00 0.00 2.40
164 165 4.817464 TCTAAGCCTACTCTCTCACGAATC 59.183 45.833 0.00 0.00 0.00 2.52
165 166 4.783055 TCTAAGCCTACTCTCTCACGAAT 58.217 43.478 0.00 0.00 0.00 3.34
166 167 4.217836 TCTAAGCCTACTCTCTCACGAA 57.782 45.455 0.00 0.00 0.00 3.85
167 168 3.908643 TCTAAGCCTACTCTCTCACGA 57.091 47.619 0.00 0.00 0.00 4.35
168 169 5.508200 AAATCTAAGCCTACTCTCTCACG 57.492 43.478 0.00 0.00 0.00 4.35
169 170 6.868622 TGAAAATCTAAGCCTACTCTCTCAC 58.131 40.000 0.00 0.00 0.00 3.51
170 171 6.097554 CCTGAAAATCTAAGCCTACTCTCTCA 59.902 42.308 0.00 0.00 0.00 3.27
171 172 6.097696 ACCTGAAAATCTAAGCCTACTCTCTC 59.902 42.308 0.00 0.00 0.00 3.20
172 173 5.961421 ACCTGAAAATCTAAGCCTACTCTCT 59.039 40.000 0.00 0.00 0.00 3.10
173 174 6.045955 CACCTGAAAATCTAAGCCTACTCTC 58.954 44.000 0.00 0.00 0.00 3.20
174 175 5.485708 ACACCTGAAAATCTAAGCCTACTCT 59.514 40.000 0.00 0.00 0.00 3.24
175 176 5.735766 ACACCTGAAAATCTAAGCCTACTC 58.264 41.667 0.00 0.00 0.00 2.59
176 177 5.763876 ACACCTGAAAATCTAAGCCTACT 57.236 39.130 0.00 0.00 0.00 2.57
177 178 5.123979 CCAACACCTGAAAATCTAAGCCTAC 59.876 44.000 0.00 0.00 0.00 3.18
178 179 5.222048 ACCAACACCTGAAAATCTAAGCCTA 60.222 40.000 0.00 0.00 0.00 3.93
179 180 4.082125 CCAACACCTGAAAATCTAAGCCT 58.918 43.478 0.00 0.00 0.00 4.58
180 181 3.826729 ACCAACACCTGAAAATCTAAGCC 59.173 43.478 0.00 0.00 0.00 4.35
181 182 4.321230 CCACCAACACCTGAAAATCTAAGC 60.321 45.833 0.00 0.00 0.00 3.09
182 183 4.218417 CCCACCAACACCTGAAAATCTAAG 59.782 45.833 0.00 0.00 0.00 2.18
183 184 4.148838 CCCACCAACACCTGAAAATCTAA 58.851 43.478 0.00 0.00 0.00 2.10
184 185 3.499563 CCCCACCAACACCTGAAAATCTA 60.500 47.826 0.00 0.00 0.00 1.98
185 186 2.597455 CCCACCAACACCTGAAAATCT 58.403 47.619 0.00 0.00 0.00 2.40
186 187 1.618343 CCCCACCAACACCTGAAAATC 59.382 52.381 0.00 0.00 0.00 2.17
187 188 1.062505 ACCCCACCAACACCTGAAAAT 60.063 47.619 0.00 0.00 0.00 1.82
188 189 0.336737 ACCCCACCAACACCTGAAAA 59.663 50.000 0.00 0.00 0.00 2.29
189 190 0.336737 AACCCCACCAACACCTGAAA 59.663 50.000 0.00 0.00 0.00 2.69
190 191 0.396417 CAACCCCACCAACACCTGAA 60.396 55.000 0.00 0.00 0.00 3.02
191 192 1.228793 CAACCCCACCAACACCTGA 59.771 57.895 0.00 0.00 0.00 3.86
192 193 0.183971 TACAACCCCACCAACACCTG 59.816 55.000 0.00 0.00 0.00 4.00
193 194 0.927767 TTACAACCCCACCAACACCT 59.072 50.000 0.00 0.00 0.00 4.00
194 195 2.003937 ATTACAACCCCACCAACACC 57.996 50.000 0.00 0.00 0.00 4.16
195 196 4.123506 CAAAATTACAACCCCACCAACAC 58.876 43.478 0.00 0.00 0.00 3.32
196 197 3.775316 ACAAAATTACAACCCCACCAACA 59.225 39.130 0.00 0.00 0.00 3.33
197 198 4.123506 CACAAAATTACAACCCCACCAAC 58.876 43.478 0.00 0.00 0.00 3.77
198 199 3.134804 CCACAAAATTACAACCCCACCAA 59.865 43.478 0.00 0.00 0.00 3.67
199 200 2.700897 CCACAAAATTACAACCCCACCA 59.299 45.455 0.00 0.00 0.00 4.17
200 201 2.037902 CCCACAAAATTACAACCCCACC 59.962 50.000 0.00 0.00 0.00 4.61
201 202 2.037902 CCCCACAAAATTACAACCCCAC 59.962 50.000 0.00 0.00 0.00 4.61
202 203 2.090719 TCCCCACAAAATTACAACCCCA 60.091 45.455 0.00 0.00 0.00 4.96
203 204 2.610873 TCCCCACAAAATTACAACCCC 58.389 47.619 0.00 0.00 0.00 4.95
204 205 3.580895 ACATCCCCACAAAATTACAACCC 59.419 43.478 0.00 0.00 0.00 4.11
205 206 4.882842 ACATCCCCACAAAATTACAACC 57.117 40.909 0.00 0.00 0.00 3.77
206 207 4.920927 CGAACATCCCCACAAAATTACAAC 59.079 41.667 0.00 0.00 0.00 3.32
207 208 4.559704 GCGAACATCCCCACAAAATTACAA 60.560 41.667 0.00 0.00 0.00 2.41
208 209 3.057174 GCGAACATCCCCACAAAATTACA 60.057 43.478 0.00 0.00 0.00 2.41
209 210 3.057174 TGCGAACATCCCCACAAAATTAC 60.057 43.478 0.00 0.00 0.00 1.89
210 211 3.157881 TGCGAACATCCCCACAAAATTA 58.842 40.909 0.00 0.00 0.00 1.40
211 212 1.967066 TGCGAACATCCCCACAAAATT 59.033 42.857 0.00 0.00 0.00 1.82
212 213 1.626686 TGCGAACATCCCCACAAAAT 58.373 45.000 0.00 0.00 0.00 1.82
213 214 1.543802 GATGCGAACATCCCCACAAAA 59.456 47.619 0.00 0.00 45.94 2.44
214 215 1.173043 GATGCGAACATCCCCACAAA 58.827 50.000 0.00 0.00 45.94 2.83
215 216 2.866872 GATGCGAACATCCCCACAA 58.133 52.632 0.00 0.00 45.94 3.33
216 217 4.635769 GATGCGAACATCCCCACA 57.364 55.556 0.00 0.00 45.94 4.17
222 223 9.663244 CAAGAACTTGTGTAGGATGCGAACATC 62.663 44.444 6.41 0.00 42.20 3.06
223 224 3.334583 ACTTGTGTAGGATGCGAACAT 57.665 42.857 0.00 0.00 39.98 2.71
224 225 2.831685 ACTTGTGTAGGATGCGAACA 57.168 45.000 0.00 0.00 0.00 3.18
225 226 3.326747 AGAACTTGTGTAGGATGCGAAC 58.673 45.455 0.00 0.00 0.00 3.95
226 227 3.678056 AGAACTTGTGTAGGATGCGAA 57.322 42.857 0.00 0.00 0.00 4.70
227 228 3.325870 CAAGAACTTGTGTAGGATGCGA 58.674 45.455 6.41 0.00 35.92 5.10
228 229 3.729526 CAAGAACTTGTGTAGGATGCG 57.270 47.619 6.41 0.00 35.92 4.73
239 240 7.389053 AGGCAGAGAAGTATTTACAAGAACTTG 59.611 37.037 12.22 12.22 45.58 3.16
240 241 7.454225 AGGCAGAGAAGTATTTACAAGAACTT 58.546 34.615 0.00 0.00 34.96 2.66
241 242 7.010339 AGGCAGAGAAGTATTTACAAGAACT 57.990 36.000 0.00 0.00 0.00 3.01
242 243 7.604545 AGAAGGCAGAGAAGTATTTACAAGAAC 59.395 37.037 0.00 0.00 0.00 3.01
243 244 7.680730 AGAAGGCAGAGAAGTATTTACAAGAA 58.319 34.615 0.00 0.00 0.00 2.52
244 245 7.246171 AGAAGGCAGAGAAGTATTTACAAGA 57.754 36.000 0.00 0.00 0.00 3.02
259 260 9.284968 GGCATACTTATTTTTATAGAAGGCAGA 57.715 33.333 0.00 0.00 0.00 4.26
260 261 9.066892 TGGCATACTTATTTTTATAGAAGGCAG 57.933 33.333 0.00 0.00 0.00 4.85
261 262 8.988546 TGGCATACTTATTTTTATAGAAGGCA 57.011 30.769 0.00 0.00 0.00 4.75
281 282 9.801873 GTGTAGTAAATACATGAAAAATGGCAT 57.198 29.630 0.00 0.00 45.94 4.40
282 283 8.247562 GGTGTAGTAAATACATGAAAAATGGCA 58.752 33.333 0.00 0.00 45.94 4.92
283 284 8.466798 AGGTGTAGTAAATACATGAAAAATGGC 58.533 33.333 0.00 0.00 45.94 4.40
284 285 9.787532 CAGGTGTAGTAAATACATGAAAAATGG 57.212 33.333 0.00 0.00 45.94 3.16
285 286 9.787532 CCAGGTGTAGTAAATACATGAAAAATG 57.212 33.333 0.00 0.00 45.94 2.32
286 287 8.966868 CCCAGGTGTAGTAAATACATGAAAAAT 58.033 33.333 0.00 0.00 45.94 1.82
287 288 8.164733 TCCCAGGTGTAGTAAATACATGAAAAA 58.835 33.333 0.00 0.00 45.94 1.94
288 289 7.691213 TCCCAGGTGTAGTAAATACATGAAAA 58.309 34.615 0.00 0.00 45.94 2.29
289 290 7.260387 TCCCAGGTGTAGTAAATACATGAAA 57.740 36.000 0.00 0.00 45.94 2.69
290 291 6.877668 TCCCAGGTGTAGTAAATACATGAA 57.122 37.500 0.00 0.00 45.94 2.57
291 292 6.877668 TTCCCAGGTGTAGTAAATACATGA 57.122 37.500 0.00 0.00 45.94 3.07
292 293 8.429641 AGTATTCCCAGGTGTAGTAAATACATG 58.570 37.037 0.00 0.00 45.94 3.21
293 294 8.562949 AGTATTCCCAGGTGTAGTAAATACAT 57.437 34.615 0.00 0.00 45.94 2.29
294 295 7.842743 AGAGTATTCCCAGGTGTAGTAAATACA 59.157 37.037 0.00 0.00 42.21 2.29
295 296 8.247666 AGAGTATTCCCAGGTGTAGTAAATAC 57.752 38.462 0.00 0.00 34.72 1.89
463 464 7.421530 TTCAGTGATCTTTACTGTGTTTAGC 57.578 36.000 10.51 0.00 44.49 3.09
467 468 9.640963 GTAGTATTCAGTGATCTTTACTGTGTT 57.359 33.333 10.51 2.11 44.49 3.32
468 469 9.026121 AGTAGTATTCAGTGATCTTTACTGTGT 57.974 33.333 10.51 4.89 44.49 3.72
469 470 9.295214 CAGTAGTATTCAGTGATCTTTACTGTG 57.705 37.037 18.11 11.21 44.49 3.66
470 471 9.244292 TCAGTAGTATTCAGTGATCTTTACTGT 57.756 33.333 21.82 8.32 44.49 3.55
473 474 9.685828 GGATCAGTAGTATTCAGTGATCTTTAC 57.314 37.037 15.90 0.00 45.84 2.01
474 475 9.421399 TGGATCAGTAGTATTCAGTGATCTTTA 57.579 33.333 15.90 4.98 45.84 1.85
475 476 8.311395 TGGATCAGTAGTATTCAGTGATCTTT 57.689 34.615 15.90 0.00 45.84 2.52
476 477 7.904558 TGGATCAGTAGTATTCAGTGATCTT 57.095 36.000 15.90 0.00 45.84 2.40
477 478 7.525194 GCATGGATCAGTAGTATTCAGTGATCT 60.525 40.741 15.90 0.00 45.84 2.75
478 479 6.589523 GCATGGATCAGTAGTATTCAGTGATC 59.410 42.308 10.38 10.38 45.84 2.92
479 480 6.462500 GCATGGATCAGTAGTATTCAGTGAT 58.538 40.000 0.00 0.00 38.49 3.06
480 481 5.507985 CGCATGGATCAGTAGTATTCAGTGA 60.508 44.000 0.00 0.00 0.00 3.41
481 482 4.683320 CGCATGGATCAGTAGTATTCAGTG 59.317 45.833 0.00 0.00 0.00 3.66
482 483 4.342378 ACGCATGGATCAGTAGTATTCAGT 59.658 41.667 0.00 0.00 0.00 3.41
483 484 4.683320 CACGCATGGATCAGTAGTATTCAG 59.317 45.833 0.00 0.00 0.00 3.02
484 485 4.620982 CACGCATGGATCAGTAGTATTCA 58.379 43.478 0.00 0.00 0.00 2.57
485 486 3.430218 GCACGCATGGATCAGTAGTATTC 59.570 47.826 0.00 0.00 0.00 1.75
486 487 3.181466 TGCACGCATGGATCAGTAGTATT 60.181 43.478 0.00 0.00 0.00 1.89
487 488 2.365293 TGCACGCATGGATCAGTAGTAT 59.635 45.455 0.00 0.00 0.00 2.12
488 489 1.754226 TGCACGCATGGATCAGTAGTA 59.246 47.619 0.00 0.00 0.00 1.82
489 490 0.536724 TGCACGCATGGATCAGTAGT 59.463 50.000 0.00 0.00 0.00 2.73
490 491 1.875009 ATGCACGCATGGATCAGTAG 58.125 50.000 3.17 0.00 29.36 2.57
528 529 1.069906 GGCCTATTATTTCTGCACGCG 60.070 52.381 3.53 3.53 0.00 6.01
531 532 3.820557 TCAGGGCCTATTATTTCTGCAC 58.179 45.455 5.28 0.00 0.00 4.57
543 544 1.287739 CAAAGGGGAAATCAGGGCCTA 59.712 52.381 5.28 0.00 0.00 3.93
544 545 0.041684 CAAAGGGGAAATCAGGGCCT 59.958 55.000 0.00 0.00 0.00 5.19
588 589 6.454318 CGAGGAACAAGAATACAATTCACTCG 60.454 42.308 0.00 0.00 35.66 4.18
691 702 4.767255 GAGGACACGGCAGGGCAG 62.767 72.222 0.00 0.00 0.00 4.85
711 722 1.153667 CAAGCAGACGGAGAGGAGC 60.154 63.158 0.00 0.00 0.00 4.70
721 732 2.749441 GGAGCAGGCCAAGCAGAC 60.749 66.667 20.51 11.66 0.00 3.51
734 749 2.973694 TAAATAGACGGGTGTGGAGC 57.026 50.000 0.00 0.00 0.00 4.70
763 778 6.150474 GGAGAAATCCAATTAACAAACCGAGA 59.850 38.462 0.00 0.00 0.00 4.04
766 781 6.267496 AGGAGAAATCCAATTAACAAACCG 57.733 37.500 0.00 0.00 0.00 4.44
842 866 1.505425 GGACGATTTATACGGTGGCC 58.495 55.000 0.00 0.00 34.93 5.36
846 870 1.670811 ACGACGGACGATTTATACGGT 59.329 47.619 6.90 0.00 45.77 4.83
847 871 2.301787 GACGACGGACGATTTATACGG 58.698 52.381 6.90 0.00 45.77 4.02
848 872 2.286359 TGGACGACGGACGATTTATACG 60.286 50.000 6.90 0.00 45.77 3.06
924 948 1.584308 GCTAGTAGCAAAGTCGCTTCG 59.416 52.381 17.47 0.00 43.56 3.79
993 1017 1.077930 CTGGTGGACCATCAGCCTG 60.078 63.158 21.73 6.58 46.46 4.85
1038 1062 3.706373 TTCTGCAGCGGGGAGGAC 61.706 66.667 9.47 0.00 35.32 3.85
1062 1086 2.676471 GGGTGGAGCGGCATGTTT 60.676 61.111 1.45 0.00 0.00 2.83
1405 1444 0.605589 CAGAGGTCGAAGAAGTGCCT 59.394 55.000 0.00 0.00 39.69 4.75
1407 1446 1.016653 GGCAGAGGTCGAAGAAGTGC 61.017 60.000 0.00 0.00 39.69 4.40
1816 1861 4.796231 CTCCTTGTCGGCGGTCGG 62.796 72.222 7.21 2.93 39.77 4.79
2205 2322 3.111939 AGCGCGTAGTAGCTGAGG 58.888 61.111 8.43 0.00 41.34 3.86
2274 2463 4.070552 GTGCCCTTCTCCTCGCGT 62.071 66.667 5.77 0.00 0.00 6.01
2371 2560 3.690139 ACTAGTAGTGGTGACATCGACAG 59.310 47.826 0.85 0.00 46.14 3.51
2372 2561 3.682696 ACTAGTAGTGGTGACATCGACA 58.317 45.455 0.85 0.00 46.14 4.35
2379 2594 3.192212 GTGGTGGTACTAGTAGTGGTGAC 59.808 52.174 13.29 2.84 0.00 3.67
2400 2615 3.685550 GCTAGCTAATGTCCATGGGTTGT 60.686 47.826 13.02 0.00 0.00 3.32
2401 2616 2.880890 GCTAGCTAATGTCCATGGGTTG 59.119 50.000 13.02 0.00 0.00 3.77
2402 2617 2.780010 AGCTAGCTAATGTCCATGGGTT 59.220 45.455 17.69 7.50 0.00 4.11
2474 2689 9.575783 TCTACAACAAACTAAACAAAACAATCC 57.424 29.630 0.00 0.00 0.00 3.01
2544 2770 1.330306 GTACGCATGCAGCAAGTTTG 58.670 50.000 19.57 0.00 46.13 2.93
2545 2771 0.110238 CGTACGCATGCAGCAAGTTT 60.110 50.000 19.57 0.00 46.13 2.66
2570 2797 1.544246 CAGTATGGACAGACACACGGA 59.456 52.381 0.00 0.00 0.00 4.69
2571 2798 1.996292 CAGTATGGACAGACACACGG 58.004 55.000 0.00 0.00 0.00 4.94
2572 2799 1.067565 AGCAGTATGGACAGACACACG 60.068 52.381 0.00 0.00 35.86 4.49
2583 2818 1.070821 CACACACACGAGCAGTATGG 58.929 55.000 0.00 0.00 35.86 2.74
2588 2823 1.083806 ACACACACACACACGAGCAG 61.084 55.000 0.00 0.00 0.00 4.24
2590 2825 1.348250 CACACACACACACACGAGC 59.652 57.895 0.00 0.00 0.00 5.03
2594 2829 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2595 2830 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2596 2831 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2597 2832 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
2598 2833 0.446222 GGACACACACACACACACAC 59.554 55.000 0.00 0.00 0.00 3.82
2599 2834 0.675208 GGGACACACACACACACACA 60.675 55.000 0.00 0.00 0.00 3.72
2600 2835 0.392461 AGGGACACACACACACACAC 60.392 55.000 0.00 0.00 0.00 3.82
2601 2836 0.326595 AAGGGACACACACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
2602 2837 1.014352 GAAGGGACACACACACACAC 58.986 55.000 0.00 0.00 0.00 3.82
2603 2838 0.107410 GGAAGGGACACACACACACA 60.107 55.000 0.00 0.00 0.00 3.72
2604 2839 0.818040 GGGAAGGGACACACACACAC 60.818 60.000 0.00 0.00 0.00 3.82
2605 2840 1.529796 GGGAAGGGACACACACACA 59.470 57.895 0.00 0.00 0.00 3.72
2606 2841 1.228154 GGGGAAGGGACACACACAC 60.228 63.158 0.00 0.00 0.00 3.82
2607 2842 1.385347 AGGGGAAGGGACACACACA 60.385 57.895 0.00 0.00 0.00 3.72
2616 2851 1.303317 CGAACCAACAGGGGAAGGG 60.303 63.158 0.00 0.00 42.91 3.95
2624 2859 0.798776 GCACTGATCCGAACCAACAG 59.201 55.000 0.00 0.00 35.14 3.16
2626 2867 0.517316 GTGCACTGATCCGAACCAAC 59.483 55.000 10.32 0.00 0.00 3.77
2638 2879 1.199327 CCTGCTGAAATCTGTGCACTG 59.801 52.381 19.41 18.10 0.00 3.66
2645 2886 5.357314 ACTTCATCATTCCTGCTGAAATCTG 59.643 40.000 0.00 0.00 37.14 2.90
2652 2893 2.681848 GACCACTTCATCATTCCTGCTG 59.318 50.000 0.00 0.00 0.00 4.41
2653 2894 2.679059 CGACCACTTCATCATTCCTGCT 60.679 50.000 0.00 0.00 0.00 4.24
2678 2919 0.863799 CAGACGATCCAATCCGCATG 59.136 55.000 0.00 0.00 0.00 4.06
2717 2975 9.784531 ATCGAATGGAAATATAGATTGACAGTT 57.215 29.630 0.00 0.00 0.00 3.16
2718 2976 9.429359 GATCGAATGGAAATATAGATTGACAGT 57.571 33.333 0.00 0.00 0.00 3.55
2724 2982 9.319143 GGATTCGATCGAATGGAAATATAGATT 57.681 33.333 39.83 17.64 43.98 2.40
2725 2983 8.700051 AGGATTCGATCGAATGGAAATATAGAT 58.300 33.333 39.83 18.06 43.98 1.98
2728 2986 8.703604 GAAGGATTCGATCGAATGGAAATATA 57.296 34.615 39.83 14.11 43.98 0.86
2759 3018 2.170166 CAAATGCAACCTGCCCTCTTA 58.830 47.619 0.00 0.00 44.23 2.10
2807 3067 6.229936 TCACAATTAGCCTTACCTAACGAT 57.770 37.500 0.00 0.00 30.69 3.73
2808 3068 5.657474 CTCACAATTAGCCTTACCTAACGA 58.343 41.667 0.00 0.00 30.69 3.85
2809 3069 4.270325 GCTCACAATTAGCCTTACCTAACG 59.730 45.833 0.00 0.00 33.73 3.18
2835 3106 1.073964 CAGCCGTCTTGTGAGTCATG 58.926 55.000 0.00 0.00 0.00 3.07
2842 3113 2.084610 TCTCAATCAGCCGTCTTGTG 57.915 50.000 0.00 0.00 0.00 3.33
2849 3120 3.904136 AACAAAGTTCTCAATCAGCCG 57.096 42.857 0.00 0.00 0.00 5.52
2860 3131 6.972901 ACCTTCTTTCGATGAAAACAAAGTTC 59.027 34.615 0.00 0.00 30.84 3.01
2867 3138 6.736853 CGTAATCACCTTCTTTCGATGAAAAC 59.263 38.462 0.00 0.00 30.84 2.43
2870 3141 4.868171 CCGTAATCACCTTCTTTCGATGAA 59.132 41.667 0.00 0.00 0.00 2.57
2885 3160 0.390603 CAACTGGCGTCCCGTAATCA 60.391 55.000 0.00 0.00 0.00 2.57
2912 3187 0.108520 GTAAGCGTTGGATCCGACCA 60.109 55.000 24.05 6.44 38.24 4.02
2930 3208 7.758495 AGATTTCAACAAAGTTAACAAGACGT 58.242 30.769 8.61 0.00 0.00 4.34
2955 3233 3.118811 CCCCTTAACCCGACAATTACGTA 60.119 47.826 0.00 0.00 0.00 3.57
2956 3234 2.355007 CCCCTTAACCCGACAATTACGT 60.355 50.000 0.00 0.00 0.00 3.57
2957 3235 2.093553 TCCCCTTAACCCGACAATTACG 60.094 50.000 0.00 0.00 0.00 3.18
2958 3236 3.198417 TCTCCCCTTAACCCGACAATTAC 59.802 47.826 0.00 0.00 0.00 1.89
2986 3264 1.466855 GTTCAGACAACGCAAGCAAC 58.533 50.000 0.00 0.00 45.62 4.17
2988 3266 0.808060 TCGTTCAGACAACGCAAGCA 60.808 50.000 2.00 0.00 42.80 3.91
3024 3302 1.982395 TCCCCAGAGGTGCAGTACG 60.982 63.158 0.00 0.00 36.75 3.67
3027 3305 2.930562 GGTCCCCAGAGGTGCAGT 60.931 66.667 0.00 0.00 36.75 4.40
3043 3321 2.403252 ACTGGAAACATAGCGGAAGG 57.597 50.000 0.00 0.00 41.51 3.46
3059 3337 6.317088 AGTATGAAAAATCATGCGTGAACTG 58.683 36.000 13.65 0.00 38.01 3.16
3060 3338 6.500684 AGTATGAAAAATCATGCGTGAACT 57.499 33.333 13.65 6.26 38.01 3.01
3061 3339 7.464358 AGTAGTATGAAAAATCATGCGTGAAC 58.536 34.615 13.65 3.84 38.01 3.18
3085 3364 7.274250 GGCTCAGCATGTTTTACATCTAAAAAG 59.726 37.037 0.00 0.00 36.53 2.27
3086 3365 7.090173 GGCTCAGCATGTTTTACATCTAAAAA 58.910 34.615 0.00 0.00 36.53 1.94
3089 3368 4.332543 CGGCTCAGCATGTTTTACATCTAA 59.667 41.667 0.00 0.00 36.53 2.10
3109 3395 3.195698 GCCATCGACAAGGACGGC 61.196 66.667 4.68 0.00 0.00 5.68
3133 3419 1.542492 CAGCCAGCAGGATCAGTTTT 58.458 50.000 0.00 0.00 36.89 2.43
3150 3436 6.260050 ACTTGTCAAAATATACGTATGCCCAG 59.740 38.462 18.37 5.69 0.00 4.45
3151 3437 6.037720 CACTTGTCAAAATATACGTATGCCCA 59.962 38.462 18.37 0.00 0.00 5.36
3152 3438 6.037830 ACACTTGTCAAAATATACGTATGCCC 59.962 38.462 18.37 0.23 0.00 5.36
3159 3445 5.198116 TCGCACACTTGTCAAAATATACG 57.802 39.130 0.00 0.00 0.00 3.06
3160 3446 5.965334 CCATCGCACACTTGTCAAAATATAC 59.035 40.000 0.00 0.00 0.00 1.47
3161 3447 5.645929 ACCATCGCACACTTGTCAAAATATA 59.354 36.000 0.00 0.00 0.00 0.86
3206 3494 2.219325 CTCGTGTCCACTCCAGCTCC 62.219 65.000 0.00 0.00 0.00 4.70
3215 3503 2.358615 TGGCATGCTCGTGTCCAC 60.359 61.111 18.92 0.00 0.00 4.02
3216 3504 2.358615 GTGGCATGCTCGTGTCCA 60.359 61.111 18.92 1.60 0.00 4.02
3217 3505 2.046892 AGTGGCATGCTCGTGTCC 60.047 61.111 18.92 0.00 0.00 4.02
3220 3508 0.952497 AGAACAGTGGCATGCTCGTG 60.952 55.000 18.92 14.09 0.00 4.35
3221 3509 0.671781 GAGAACAGTGGCATGCTCGT 60.672 55.000 18.92 6.82 0.00 4.18
3222 3510 1.364626 GGAGAACAGTGGCATGCTCG 61.365 60.000 18.92 6.16 0.00 5.03
3223 3511 0.321919 TGGAGAACAGTGGCATGCTC 60.322 55.000 18.92 11.26 0.00 4.26
3230 3518 3.189287 GTGCACTAATTGGAGAACAGTGG 59.811 47.826 10.32 0.00 37.63 4.00
3253 3541 1.227943 GCAACTCCTCCACTGTGCA 60.228 57.895 1.29 0.00 0.00 4.57
3308 3596 2.730094 CCACCTGTTGCCTTGTGC 59.270 61.111 0.00 0.00 41.77 4.57
3334 3622 0.537371 AAAATCCCGCGGATGGATCC 60.537 55.000 30.73 4.20 42.27 3.36
3335 3623 0.875059 GAAAATCCCGCGGATGGATC 59.125 55.000 30.73 15.39 42.27 3.36
3336 3624 0.182537 TGAAAATCCCGCGGATGGAT 59.817 50.000 30.73 18.55 42.27 3.41
3337 3625 0.182537 ATGAAAATCCCGCGGATGGA 59.817 50.000 30.73 16.81 42.27 3.41
3338 3626 0.593128 GATGAAAATCCCGCGGATGG 59.407 55.000 30.73 10.73 42.27 3.51
3339 3627 1.265095 CAGATGAAAATCCCGCGGATG 59.735 52.381 30.73 11.63 42.27 3.51
3340 3628 1.597742 CAGATGAAAATCCCGCGGAT 58.402 50.000 30.73 15.71 45.46 4.18
3341 3629 0.463654 CCAGATGAAAATCCCGCGGA 60.464 55.000 30.73 13.82 35.55 5.54
3342 3630 0.463654 TCCAGATGAAAATCCCGCGG 60.464 55.000 21.04 21.04 0.00 6.46
3343 3631 3.079131 TCCAGATGAAAATCCCGCG 57.921 52.632 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.