AutoCloner

Multiple sequence alignment - TraesCS3B01G534900

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G534900	chr3B	100.000	9121	0	0	1	9121	774163133	774172253	0.000000e+00	16844.0
1	TraesCS3B01G534900	chr3B	93.874	1763	87	11	3438	5189	734987774	734986022	0.000000e+00	2638.0
2	TraesCS3B01G534900	chr3B	91.486	1656	112	13	3552	5190	774391036	774392679	0.000000e+00	2250.0
3	TraesCS3B01G534900	chr3B	88.089	1486	120	26	2059	3539	774239001	774240434	0.000000e+00	1711.0
4	TraesCS3B01G534900	chr3B	90.756	1125	70	13	5280	6400	734986014	734984920	0.000000e+00	1471.0
5	TraesCS3B01G534900	chr3B	93.307	1001	34	5	7779	8779	734969798	734968831	0.000000e+00	1447.0
6	TraesCS3B01G534900	chr3B	86.744	1124	92	30	1904	3024	774235662	774236731	0.000000e+00	1197.0
7	TraesCS3B01G534900	chr3B	82.912	831	68	30	8257	9066	550780889	550781666	0.000000e+00	680.0
8	TraesCS3B01G534900	chr3B	87.226	548	49	14	1901	2432	734993026	734992484	1.010000e-168	604.0
9	TraesCS3B01G534900	chr3B	91.354	347	24	1	8775	9121	734917664	734917324	3.860000e-128	470.0
10	TraesCS3B01G534900	chr3B	82.558	258	37	5	1535	1789	151119192	151119444	4.290000e-53	220.0
11	TraesCS3B01G534900	chr3B	81.716	268	35	10	1535	1797	765547200	765546942	2.580000e-50	211.0
12	TraesCS3B01G534900	chr3B	91.176	102	7	2	5172	5271	20438300	20438401	4.440000e-28	137.0
13	TraesCS3B01G534900	chr3A	93.100	3000	149	34	5280	8258	714779829	714782791	0.000000e+00	4340.0
14	TraesCS3B01G534900	chr3A	95.127	2360	100	11	2846	5193	679842317	679844673	0.000000e+00	3707.0
15	TraesCS3B01G534900	chr3A	93.429	2496	108	31	5270	7747	679844667	679847124	0.000000e+00	3650.0
16	TraesCS3B01G534900	chr3A	93.950	2347	115	17	2846	5179	714777203	714779535	0.000000e+00	3522.0
17	TraesCS3B01G534900	chr3A	95.765	1653	63	6	3542	5189	607835214	607836864	0.000000e+00	2658.0
18	TraesCS3B01G534900	chr3A	93.585	1512	83	12	6245	7747	607837836	607839342	0.000000e+00	2242.0
19	TraesCS3B01G534900	chr3A	91.426	933	45	13	5280	6211	607836872	607837770	0.000000e+00	1247.0
20	TraesCS3B01G534900	chr3A	89.479	960	92	6	6788	7745	714949773	714950725	0.000000e+00	1205.0
21	TraesCS3B01G534900	chr3A	85.421	926	92	20	1805	2713	679841351	679842250	0.000000e+00	922.0
22	TraesCS3B01G534900	chr3A	86.117	886	78	21	8257	9120	679847867	679848729	0.000000e+00	913.0
23	TraesCS3B01G534900	chr3A	87.850	749	58	8	1966	2713	714776420	714777136	0.000000e+00	848.0
24	TraesCS3B01G534900	chr3A	94.142	478	24	2	7779	8252	679847219	679847696	0.000000e+00	725.0
25	TraesCS3B01G534900	chr3A	84.299	777	66	23	8363	9120	714783037	714783776	0.000000e+00	708.0
26	TraesCS3B01G534900	chr3A	83.697	779	75	27	8364	9120	607840177	607840925	0.000000e+00	688.0
27	TraesCS3B01G534900	chr3A	92.484	479	31	5	7779	8257	607839468	607839941	0.000000e+00	680.0
28	TraesCS3B01G534900	chr3A	78.963	984	140	41	2339	3301	714944997	714945934	7.830000e-170	608.0
29	TraesCS3B01G534900	chr3A	82.836	268	32	9	1535	1797	710836261	710836003	2.560000e-55	228.0
30	TraesCS3B01G534900	chr3A	83.465	254	33	8	1537	1785	738100941	738100692	2.560000e-55	228.0
31	TraesCS3B01G534900	chr3A	91.803	61	4	1	2755	2815	714777142	714777201	5.870000e-12	84.2
32	TraesCS3B01G534900	chr3A	90.164	61	5	1	2755	2815	679842256	679842315	2.730000e-10	78.7
33	TraesCS3B01G534900	chr7B	91.210	3083	189	34	2112	5161	6952138	6955171	0.000000e+00	4117.0
34	TraesCS3B01G534900	chr7B	90.971	2492	150	41	5280	7747	6975246	6977686	0.000000e+00	3286.0
35	TraesCS3B01G534900	chr7B	88.041	878	78	18	1	864	604770135	604770999	0.000000e+00	1014.0
36	TraesCS3B01G534900	chr7B	87.500	888	88	17	1	867	323758516	323757631	0.000000e+00	1003.0
37	TraesCS3B01G534900	chr7B	87.234	893	73	13	1	861	68226065	68226948	0.000000e+00	979.0
38	TraesCS3B01G534900	chr7B	84.925	869	100	18	1	862	47572674	47571830	0.000000e+00	850.0
39	TraesCS3B01G534900	chr7B	82.159	880	87	33	8257	9114	6978428	6979259	0.000000e+00	691.0
40	TraesCS3B01G534900	chr7B	90.349	487	35	5	7779	8258	6977781	6978262	6.010000e-176	628.0
41	TraesCS3B01G534900	chr7B	84.751	623	71	14	102	720	38685030	38684428	3.640000e-168	603.0
42	TraesCS3B01G534900	chr7B	85.294	544	66	10	923	1460	6936519	6937054	4.810000e-152	549.0
43	TraesCS3B01G534900	chr7B	83.217	143	19	4	1535	1673	139719834	139719975	9.610000e-25	126.0
44	TraesCS3B01G534900	chr7D	94.168	2452	113	14	2755	5193	600051615	600054049	0.000000e+00	3709.0
45	TraesCS3B01G534900	chr7D	94.768	1529	58	14	5270	6790	600054043	600055557	0.000000e+00	2361.0
46	TraesCS3B01G534900	chr7D	93.920	1250	58	15	6788	8024	600056094	600057338	0.000000e+00	1871.0
47	TraesCS3B01G534900	chr7D	87.931	986	61	22	8128	9098	600057343	600058285	0.000000e+00	1109.0
48	TraesCS3B01G534900	chr7D	88.604	623	58	13	1901	2513	600050848	600051467	0.000000e+00	745.0
49	TraesCS3B01G534900	chr7D	85.353	553	65	13	923	1468	600050113	600050656	8.000000e-155	558.0
50	TraesCS3B01G534900	chr7D	81.532	444	56	16	419	861	8851996	8851578	8.770000e-90	342.0
51	TraesCS3B01G534900	chr7D	83.871	248	33	5	1535	1781	188360983	188361224	7.120000e-56	230.0
52	TraesCS3B01G534900	chr7D	84.286	210	20	9	1535	1741	616254341	616254540	9.350000e-45	193.0
53	TraesCS3B01G534900	chr7D	95.745	94	4	0	5180	5273	426558990	426558897	1.590000e-32	152.0
54	TraesCS3B01G534900	chr7D	94.624	93	4	1	5181	5272	22964348	22964256	9.550000e-30	143.0
55	TraesCS3B01G534900	chr1B	91.528	2644	150	28	2439	5066	146963279	146960694	0.000000e+00	3574.0
56	TraesCS3B01G534900	chr1B	92.336	2140	119	19	2439	4570	116126647	116128749	0.000000e+00	3001.0
57	TraesCS3B01G534900	chr1B	93.676	1439	71	10	5428	6858	116139062	116140488	0.000000e+00	2135.0
58	TraesCS3B01G534900	chr1B	93.976	1162	52	8	5705	6857	146952647	146951495	0.000000e+00	1742.0
59	TraesCS3B01G534900	chr1B	96.154	962	34	3	6788	7747	596168659	596169619	0.000000e+00	1568.0
60	TraesCS3B01G534900	chr1B	88.214	823	66	9	1	799	157940945	157940130	0.000000e+00	953.0
61	TraesCS3B01G534900	chr1B	91.511	483	33	4	7779	8258	596169714	596170191	0.000000e+00	658.0
62	TraesCS3B01G534900	chr1B	91.322	484	34	5	7779	8258	116141513	116141992	0.000000e+00	654.0
63	TraesCS3B01G534900	chr1B	83.889	720	76	21	8417	9120	146949539	146948844	0.000000e+00	651.0
64	TraesCS3B01G534900	chr1B	82.593	810	67	32	8285	9077	143074592	143075344	0.000000e+00	647.0
65	TraesCS3B01G534900	chr1B	93.333	375	23	2	5270	5644	146953013	146952641	3.720000e-153	553.0
66	TraesCS3B01G534900	chr1B	88.333	420	37	8	1901	2319	116126179	116126587	2.290000e-135	494.0
67	TraesCS3B01G534900	chr1B	80.526	647	67	27	8482	9120	596170628	596171223	8.410000e-120	442.0
68	TraesCS3B01G534900	chr1B	83.140	516	40	24	1901	2409	146963750	146963275	2.350000e-115	427.0
69	TraesCS3B01G534900	chr1B	85.354	396	38	14	8257	8634	116142158	116142551	8.590000e-105	392.0
70	TraesCS3B01G534900	chr1B	87.644	348	25	1	7980	8309	143074221	143074568	1.110000e-103	388.0
71	TraesCS3B01G534900	chr1B	92.784	97	6	1	5187	5283	451732329	451732234	1.230000e-28	139.0
72	TraesCS3B01G534900	chr1D	91.663	2423	131	32	1880	4264	64323524	64325913	0.000000e+00	3290.0
73	TraesCS3B01G534900	chr1D	91.770	2333	138	27	1940	4264	96071960	96069674	0.000000e+00	3195.0
74	TraesCS3B01G534900	chr1D	92.951	1518	78	18	5280	6791	96068657	96067163	0.000000e+00	2183.0
75	TraesCS3B01G534900	chr1D	93.807	1098	52	11	5700	6791	64327541	64328628	0.000000e+00	1637.0
76	TraesCS3B01G534900	chr1D	97.089	962	25	3	6788	7747	96042695	96041735	0.000000e+00	1618.0
77	TraesCS3B01G534900	chr1D	96.881	962	22	5	6788	7747	64329173	64330128	0.000000e+00	1604.0
78	TraesCS3B01G534900	chr1D	95.916	906	28	6	6846	7747	439353129	439354029	0.000000e+00	1459.0
79	TraesCS3B01G534900	chr1D	96.084	664	24	2	7086	7747	439347612	439348275	0.000000e+00	1081.0
80	TraesCS3B01G534900	chr1D	84.872	780	72	24	8363	9120	64330986	64331741	0.000000e+00	745.0
81	TraesCS3B01G534900	chr1D	93.708	445	24	2	7779	8223	439354124	439354564	0.000000e+00	664.0
82	TraesCS3B01G534900	chr1D	84.870	694	64	21	8444	9120	96040778	96040109	0.000000e+00	662.0
83	TraesCS3B01G534900	chr1D	90.144	487	41	7	7773	8257	64330246	64330727	2.160000e-175	627.0
84	TraesCS3B01G534900	chr6A	93.591	1810	78	10	3390	5193	121738740	121736963	0.000000e+00	2665.0
85	TraesCS3B01G534900	chr6A	94.167	1423	64	13	6336	7747	121732843	121731429	0.000000e+00	2150.0
86	TraesCS3B01G534900	chr6A	84.743	1088	92	23	1993	3074	121745309	121744290	0.000000e+00	1022.0
87	TraesCS3B01G534900	chr6A	91.952	584	27	5	5723	6305	121733485	121732921	0.000000e+00	800.0
88	TraesCS3B01G534900	chr6A	93.361	482	26	3	7779	8257	121731309	121730831	0.000000e+00	708.0
89	TraesCS3B01G534900	chr6A	94.752	343	12	4	8291	8629	121730653	121730313	6.270000e-146	529.0
90	TraesCS3B01G534900	chr6A	90.533	338	21	7	3064	3392	121739215	121738880	3.910000e-118	436.0
91	TraesCS3B01G534900	chr3D	96.016	1531	42	11	5269	6791	579679132	579680651	0.000000e+00	2471.0
92	TraesCS3B01G534900	chr3D	96.850	1111	31	3	4083	5190	579678022	579679131	0.000000e+00	1855.0
93	TraesCS3B01G534900	chr3D	89.962	1066	59	22	2389	3449	579676047	579677069	0.000000e+00	1332.0
94	TraesCS3B01G534900	chr3D	98.170	601	11	0	3482	4082	579677306	579677906	0.000000e+00	1050.0
95	TraesCS3B01G534900	chr3D	82.285	779	65	31	8363	9120	579682924	579683650	2.820000e-169	606.0
96	TraesCS3B01G534900	chr3D	81.545	764	97	23	2567	3301	579727061	579727809	2.840000e-164	590.0
97	TraesCS3B01G534900	chr3D	84.897	437	49	10	1906	2332	579726192	579726621	8.460000e-115	425.0
98	TraesCS3B01G534900	chr3D	79.779	272	39	9	1535	1795	580218604	580218338	5.620000e-42	183.0
99	TraesCS3B01G534900	chr2B	88.050	887	76	18	1	861	325639939	325640821	0.000000e+00	1024.0
100	TraesCS3B01G534900	chr5B	86.261	888	74	12	1	861	594927035	594926169	0.000000e+00	920.0
101	TraesCS3B01G534900	chr5B	86.599	791	70	10	1	767	619055428	619054650	0.000000e+00	841.0
102	TraesCS3B01G534900	chr5B	85.660	788	77	8	6	767	639837104	639836327	0.000000e+00	797.0
103	TraesCS3B01G534900	chr5B	84.848	627	73	6	151	767	375651642	375651028	6.050000e-171	612.0
104	TraesCS3B01G534900	chr6B	86.772	756	61	11	1	732	710639327	710640067	0.000000e+00	806.0
105	TraesCS3B01G534900	chr6B	88.175	685	51	14	197	859	98828725	98829401	0.000000e+00	789.0
106	TraesCS3B01G534900	chr6B	87.421	636	50	11	154	767	153684269	153683642	0.000000e+00	704.0
107	TraesCS3B01G534900	chr6B	83.846	780	78	21	1	754	674213582	674214339	0.000000e+00	699.0
108	TraesCS3B01G534900	chr6B	85.141	673	75	15	1	664	452536450	452535794	0.000000e+00	665.0
109	TraesCS3B01G534900	chr6B	86.043	609	55	11	154	740	153755536	153754936	2.160000e-175	627.0
110	TraesCS3B01G534900	chr4B	82.571	918	90	36	1	864	574231863	574232764	0.000000e+00	745.0
111	TraesCS3B01G534900	chr4B	95.556	90	3	1	5182	5271	104337326	104337414	9.550000e-30	143.0
112	TraesCS3B01G534900	chr1A	85.758	660	71	16	7980	8623	86065244	86064592	0.000000e+00	676.0
113	TraesCS3B01G534900	chr6D	83.059	791	67	33	8364	9114	68914222	68914985	0.000000e+00	656.0
114	TraesCS3B01G534900	chr6D	82.772	267	36	8	1535	1797	433605163	433605423	7.120000e-56	230.0
115	TraesCS3B01G534900	chr2D	90.296	371	29	6	2845	3211	530163413	530163780	6.410000e-131	479.0
116	TraesCS3B01G534900	chr2D	83.602	372	42	11	497	863	638873381	638873738	1.900000e-86	331.0
117	TraesCS3B01G534900	chr2D	80.755	265	27	12	1535	1797	592778384	592778142	1.560000e-42	185.0
118	TraesCS3B01G534900	chr2D	94.737	95	4	1	5180	5273	341665952	341665858	7.380000e-31	147.0
119	TraesCS3B01G534900	chr7A	79.073	712	115	17	1	695	734545600	734546294	8.350000e-125	459.0
120	TraesCS3B01G534900	chr4A	85.448	268	29	6	1535	1797	685789147	685789409	4.200000e-68	270.0
121	TraesCS3B01G534900	chrUn	82.407	324	41	12	1900	2210	184904834	184904514	1.510000e-67	268.0
122	TraesCS3B01G534900	chrUn	82.555	321	40	12	1900	2207	355713786	355714103	1.510000e-67	268.0
123	TraesCS3B01G534900	chrUn	82.243	321	41	12	1900	2207	246662554	246662871	7.020000e-66	263.0
124	TraesCS3B01G534900	chrUn	82.392	301	40	8	1920	2210	184904102	184903805	5.470000e-62	250.0
125	TraesCS3B01G534900	chrUn	81.562	320	44	10	1900	2207	246663264	246663580	5.470000e-62	250.0
126	TraesCS3B01G534900	chrUn	81.562	320	44	10	1900	2207	355714496	355714812	5.470000e-62	250.0
127	TraesCS3B01G534900	chr5A	80.534	262	41	8	1535	1790	438153601	438153344	9.350000e-45	193.0
128	TraesCS3B01G534900	chr5D	89.130	138	14	1	3434	3571	484017979	484017843	4.380000e-38	171.0
129	TraesCS3B01G534900	chr4D	94.565	92	5	0	5180	5271	225215518	225215609	9.550000e-30	143.0
130	TraesCS3B01G534900	chr4D	92.857	98	5	2	5177	5272	478671840	478671937	3.430000e-29	141.0
131	TraesCS3B01G534900	chr2A	89.189	111	9	3	5161	5271	498099550	498099443	1.600000e-27	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G534900	chr3B	774163133	774172253	9120	False	16844.000000	16844	100.000000	1	9121	1	chr3B.!!$F4	9120
1	TraesCS3B01G534900	chr3B	774391036	774392679	1643	False	2250.000000	2250	91.486000	3552	5190	1	chr3B.!!$F5	1638
2	TraesCS3B01G534900	chr3B	734984920	734987774	2854	True	2054.500000	2638	92.315000	3438	6400	2	chr3B.!!$R5	2962
3	TraesCS3B01G534900	chr3B	774235662	774240434	4772	False	1454.000000	1711	87.416500	1904	3539	2	chr3B.!!$F6	1635
4	TraesCS3B01G534900	chr3B	734968831	734969798	967	True	1447.000000	1447	93.307000	7779	8779	1	chr3B.!!$R2	1000
5	TraesCS3B01G534900	chr3B	550780889	550781666	777	False	680.000000	680	82.912000	8257	9066	1	chr3B.!!$F3	809
6	TraesCS3B01G534900	chr3B	734992484	734993026	542	True	604.000000	604	87.226000	1901	2432	1	chr3B.!!$R3	531
7	TraesCS3B01G534900	chr3A	714776420	714783776	7356	False	1900.440000	4340	90.200400	1966	9120	5	chr3A.!!$F3	7154
8	TraesCS3B01G534900	chr3A	679841351	679848729	7378	False	1665.950000	3707	90.733333	1805	9120	6	chr3A.!!$F2	7315
9	TraesCS3B01G534900	chr3A	607835214	607840925	5711	False	1503.000000	2658	91.391400	3542	9120	5	chr3A.!!$F1	5578
10	TraesCS3B01G534900	chr3A	714944997	714950725	5728	False	906.500000	1205	84.221000	2339	7745	2	chr3A.!!$F4	5406
11	TraesCS3B01G534900	chr7B	6952138	6955171	3033	False	4117.000000	4117	91.210000	2112	5161	1	chr7B.!!$F2	3049
12	TraesCS3B01G534900	chr7B	6975246	6979259	4013	False	1535.000000	3286	87.826333	5280	9114	3	chr7B.!!$F6	3834
13	TraesCS3B01G534900	chr7B	604770135	604770999	864	False	1014.000000	1014	88.041000	1	864	1	chr7B.!!$F5	863
14	TraesCS3B01G534900	chr7B	323757631	323758516	885	True	1003.000000	1003	87.500000	1	867	1	chr7B.!!$R3	866
15	TraesCS3B01G534900	chr7B	68226065	68226948	883	False	979.000000	979	87.234000	1	861	1	chr7B.!!$F3	860
16	TraesCS3B01G534900	chr7B	47571830	47572674	844	True	850.000000	850	84.925000	1	862	1	chr7B.!!$R2	861
17	TraesCS3B01G534900	chr7B	38684428	38685030	602	True	603.000000	603	84.751000	102	720	1	chr7B.!!$R1	618
18	TraesCS3B01G534900	chr7B	6936519	6937054	535	False	549.000000	549	85.294000	923	1460	1	chr7B.!!$F1	537
19	TraesCS3B01G534900	chr7D	600050113	600058285	8172	False	1725.500000	3709	90.790667	923	9098	6	chr7D.!!$F3	8175
20	TraesCS3B01G534900	chr1B	146960694	146963750	3056	True	2000.500000	3574	87.334000	1901	5066	2	chr1B.!!$R4	3165
21	TraesCS3B01G534900	chr1B	116126179	116128749	2570	False	1747.500000	3001	90.334500	1901	4570	2	chr1B.!!$F1	2669
22	TraesCS3B01G534900	chr1B	116139062	116142551	3489	False	1060.333333	2135	90.117333	5428	8634	3	chr1B.!!$F2	3206
23	TraesCS3B01G534900	chr1B	146948844	146953013	4169	True	982.000000	1742	90.399333	5270	9120	3	chr1B.!!$R3	3850
24	TraesCS3B01G534900	chr1B	157940130	157940945	815	True	953.000000	953	88.214000	1	799	1	chr1B.!!$R1	798
25	TraesCS3B01G534900	chr1B	596168659	596171223	2564	False	889.333333	1568	89.397000	6788	9120	3	chr1B.!!$F4	2332
26	TraesCS3B01G534900	chr1B	143074221	143075344	1123	False	517.500000	647	85.118500	7980	9077	2	chr1B.!!$F3	1097
27	TraesCS3B01G534900	chr1D	96067163	96071960	4797	True	2689.000000	3195	92.360500	1940	6791	2	chr1D.!!$R2	4851
28	TraesCS3B01G534900	chr1D	64323524	64331741	8217	False	1580.600000	3290	91.473400	1880	9120	5	chr1D.!!$F2	7240
29	TraesCS3B01G534900	chr1D	96040109	96042695	2586	True	1140.000000	1618	90.979500	6788	9120	2	chr1D.!!$R1	2332
30	TraesCS3B01G534900	chr1D	439347612	439348275	663	False	1081.000000	1081	96.084000	7086	7747	1	chr1D.!!$F1	661
31	TraesCS3B01G534900	chr1D	439353129	439354564	1435	False	1061.500000	1459	94.812000	6846	8223	2	chr1D.!!$F3	1377
32	TraesCS3B01G534900	chr6A	121730313	121739215	8902	True	1214.666667	2665	93.059333	3064	8629	6	chr6A.!!$R2	5565
33	TraesCS3B01G534900	chr6A	121744290	121745309	1019	True	1022.000000	1022	84.743000	1993	3074	1	chr6A.!!$R1	1081
34	TraesCS3B01G534900	chr3D	579676047	579683650	7603	False	1462.800000	2471	92.656600	2389	9120	5	chr3D.!!$F1	6731
35	TraesCS3B01G534900	chr3D	579726192	579727809	1617	False	507.500000	590	83.221000	1906	3301	2	chr3D.!!$F2	1395
36	TraesCS3B01G534900	chr2B	325639939	325640821	882	False	1024.000000	1024	88.050000	1	861	1	chr2B.!!$F1	860
37	TraesCS3B01G534900	chr5B	594926169	594927035	866	True	920.000000	920	86.261000	1	861	1	chr5B.!!$R2	860
38	TraesCS3B01G534900	chr5B	619054650	619055428	778	True	841.000000	841	86.599000	1	767	1	chr5B.!!$R3	766
39	TraesCS3B01G534900	chr5B	639836327	639837104	777	True	797.000000	797	85.660000	6	767	1	chr5B.!!$R4	761
40	TraesCS3B01G534900	chr5B	375651028	375651642	614	True	612.000000	612	84.848000	151	767	1	chr5B.!!$R1	616
41	TraesCS3B01G534900	chr6B	710639327	710640067	740	False	806.000000	806	86.772000	1	732	1	chr6B.!!$F3	731
42	TraesCS3B01G534900	chr6B	98828725	98829401	676	False	789.000000	789	88.175000	197	859	1	chr6B.!!$F1	662
43	TraesCS3B01G534900	chr6B	153683642	153684269	627	True	704.000000	704	87.421000	154	767	1	chr6B.!!$R1	613
44	TraesCS3B01G534900	chr6B	674213582	674214339	757	False	699.000000	699	83.846000	1	754	1	chr6B.!!$F2	753
45	TraesCS3B01G534900	chr6B	452535794	452536450	656	True	665.000000	665	85.141000	1	664	1	chr6B.!!$R3	663
46	TraesCS3B01G534900	chr6B	153754936	153755536	600	True	627.000000	627	86.043000	154	740	1	chr6B.!!$R2	586
47	TraesCS3B01G534900	chr4B	574231863	574232764	901	False	745.000000	745	82.571000	1	864	1	chr4B.!!$F2	863
48	TraesCS3B01G534900	chr1A	86064592	86065244	652	True	676.000000	676	85.758000	7980	8623	1	chr1A.!!$R1	643
49	TraesCS3B01G534900	chr6D	68914222	68914985	763	False	656.000000	656	83.059000	8364	9114	1	chr6D.!!$F1	750
50	TraesCS3B01G534900	chr7A	734545600	734546294	694	False	459.000000	459	79.073000	1	695	1	chr7A.!!$F1	694
51	TraesCS3B01G534900	chrUn	184903805	184904834	1029	True	259.000000	268	82.399500	1900	2210	2	chrUn.!!$R1	310
52	TraesCS3B01G534900	chrUn	355713786	355714812	1026	False	259.000000	268	82.058500	1900	2207	2	chrUn.!!$F2	307
53	TraesCS3B01G534900	chrUn	246662554	246663580	1026	False	256.500000	263	81.902500	1900	2207	2	chrUn.!!$F1	307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
890	1031	0.036294	GCTAGGTTTCCTTGGCGAGT	60.036	55.000	0.12	0.00	34.61	4.18	F
1495	1645	0.028110	GCGTTTTGGATCTCGGCATC	59.972	55.000	0.00	0.00	0.00	3.91	F
1503	1653	0.036577	GATCTCGGCATCCATGGAGG	60.037	60.000	22.10	22.10	39.47	4.30	F
1938	2102	0.179020	CAATAATGGCGGGCTCTCCA	60.179	55.000	0.00	0.00	36.70	3.86	F
2564	3371	0.450583	ATGTTTGCTCATCTGCTGCG	59.549	50.000	0.00	0.00	0.00	5.18	F
2565	3372	1.136147	GTTTGCTCATCTGCTGCGG	59.864	57.895	0.95	0.95	0.00	5.69	F
2872	7095	1.334054	GCTTTCTGCATTGAGTTGCG	58.666	50.000	0.00	0.00	45.77	4.85	F
4809	9687	1.557832	ACTTGGGGCTTAGCGTATGAA	59.442	47.619	0.00	0.00	0.00	2.57	F
5739	14249	2.481441	ACTGAGGATTGGGAGTATGCA	58.519	47.619	0.00	0.00	0.00	3.96	F
7427	16917	0.250640	AACTTCTCTGCTGGTGCTGG	60.251	55.000	0.00	0.00	40.48	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1786	1936	0.034896	GTGGTCTTCGAGGCCTTCAA	59.965	55.000	6.77	1.26	41.63	2.69	R
2964	7191	1.533625	CATGACGTCAACCACCCAAT	58.466	50.000	24.13	0.00	0.00	3.16	R
2971	7198	2.338500	GAGTCTTCCATGACGTCAACC	58.662	52.381	24.13	5.56	41.47	3.77	R
3075	7310	5.488919	AGGATTAACAGATTCCAGAGGACAA	59.511	40.000	0.00	0.00	30.98	3.18	R
4264	9040	5.978814	AGTAGGAATGTTTCTTGATACGCT	58.021	37.500	0.00	0.00	0.00	5.07	R
4265	9041	6.312918	TGAAGTAGGAATGTTTCTTGATACGC	59.687	38.462	0.00	0.00	0.00	4.42	R
4855	9733	0.179094	AGACCGTGCGAGACAAACAA	60.179	50.000	0.00	0.00	0.00	2.83	R
6078	14642	1.772453	ACTTTTCTTCTGGAACGGGGA	59.228	47.619	0.00	0.00	33.13	4.81	R
7666	17156	0.891373	CAAGCGAGAGAAGAGTGGGA	59.109	55.000	0.00	0.00	0.00	4.37	R
8345	18490	0.250467	TCAGACCAGAACAGCTTGGC	60.250	55.000	1.89	0.00	0.00	4.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	145	0.112412	GACAAAGGGGCCAAGAAGGA	59.888	55.000	4.39	0.00	41.22	3.36
141	158	0.319641	AGAAGGAGAAACACGCCGAC	60.320	55.000	0.00	0.00	43.25	4.79
266	285	0.306533	ATGACAAACAACGCCGTCAC	59.693	50.000	0.00	0.00	40.91	3.67
479	555	1.366854	CCGACTGACGATGTCTCCGA	61.367	60.000	0.22	0.00	45.77	4.55
491	567	1.982395	TCTCCGAGACGCCCAACAT	60.982	57.895	0.00	0.00	0.00	2.71
670	799	2.135139	GCCGAACTATTGCGATGATCA	58.865	47.619	0.00	0.00	0.00	2.92
732	865	0.535335	ATATTGGACGCGTGTCTGGT	59.465	50.000	26.79	15.38	44.83	4.00
833	969	0.668535	GCTCTTTTTCGGTGCCTTGT	59.331	50.000	0.00	0.00	0.00	3.16
864	1005	4.230455	AGGGCTAGAGATGCTCTAACAAT	58.770	43.478	5.75	0.00	41.74	2.71
865	1006	4.040217	AGGGCTAGAGATGCTCTAACAATG	59.960	45.833	5.75	0.00	41.74	2.82
866	1007	4.314121	GGCTAGAGATGCTCTAACAATGG	58.686	47.826	5.75	0.00	41.74	3.16
867	1008	4.202305	GGCTAGAGATGCTCTAACAATGGT	60.202	45.833	5.75	0.00	41.74	3.55
868	1009	5.011125	GGCTAGAGATGCTCTAACAATGGTA	59.989	44.000	5.75	0.00	41.74	3.25
869	1010	6.295575	GGCTAGAGATGCTCTAACAATGGTAT	60.296	42.308	5.75	0.00	41.74	2.73
870	1011	6.589523	GCTAGAGATGCTCTAACAATGGTATG	59.410	42.308	5.75	0.00	41.74	2.39
871	1012	5.862845	AGAGATGCTCTAACAATGGTATGG	58.137	41.667	0.00	0.00	39.28	2.74
872	1013	4.392940	AGATGCTCTAACAATGGTATGGC	58.607	43.478	0.00	0.00	0.00	4.40
873	1014	3.931907	TGCTCTAACAATGGTATGGCT	57.068	42.857	4.78	0.00	0.00	4.75
874	1015	5.307976	AGATGCTCTAACAATGGTATGGCTA	59.692	40.000	4.78	0.00	0.00	3.93
875	1016	4.960938	TGCTCTAACAATGGTATGGCTAG	58.039	43.478	4.78	0.00	0.00	3.42
876	1017	4.202357	TGCTCTAACAATGGTATGGCTAGG	60.202	45.833	0.00	0.00	0.00	3.02
877	1018	4.202367	GCTCTAACAATGGTATGGCTAGGT	60.202	45.833	0.00	0.00	0.00	3.08
878	1019	5.687706	GCTCTAACAATGGTATGGCTAGGTT	60.688	44.000	0.00	0.00	0.00	3.50
879	1020	6.321821	TCTAACAATGGTATGGCTAGGTTT	57.678	37.500	0.00	0.00	0.00	3.27
880	1021	6.354130	TCTAACAATGGTATGGCTAGGTTTC	58.646	40.000	0.00	0.00	0.00	2.78
881	1022	3.898482	ACAATGGTATGGCTAGGTTTCC	58.102	45.455	0.00	0.00	0.00	3.13
882	1023	3.527665	ACAATGGTATGGCTAGGTTTCCT	59.472	43.478	0.00	0.00	37.71	3.36
883	1024	4.017499	ACAATGGTATGGCTAGGTTTCCTT	60.017	41.667	0.00	0.00	34.61	3.36
884	1025	3.644966	TGGTATGGCTAGGTTTCCTTG	57.355	47.619	0.00	0.00	34.61	3.61
885	1026	2.241176	TGGTATGGCTAGGTTTCCTTGG	59.759	50.000	0.00	0.00	34.61	3.61
887	1028	3.905249	GGCTAGGTTTCCTTGGCG	58.095	61.111	7.80	0.00	41.09	5.69
888	1029	1.298667	GGCTAGGTTTCCTTGGCGA	59.701	57.895	7.80	0.00	41.09	5.54
889	1030	0.744771	GGCTAGGTTTCCTTGGCGAG	60.745	60.000	7.80	0.00	41.09	5.03
890	1031	0.036294	GCTAGGTTTCCTTGGCGAGT	60.036	55.000	0.12	0.00	34.61	4.18
891	1032	1.610886	GCTAGGTTTCCTTGGCGAGTT	60.611	52.381	0.12	0.00	34.61	3.01
892	1033	2.076863	CTAGGTTTCCTTGGCGAGTTG	58.923	52.381	0.12	0.00	34.61	3.16
893	1034	1.172812	AGGTTTCCTTGGCGAGTTGC	61.173	55.000	0.12	0.00	45.38	4.17
894	1035	1.172812	GGTTTCCTTGGCGAGTTGCT	61.173	55.000	1.51	0.00	45.43	3.91
895	1036	0.238553	GTTTCCTTGGCGAGTTGCTC	59.761	55.000	1.51	0.00	45.43	4.26
896	1037	0.108585	TTTCCTTGGCGAGTTGCTCT	59.891	50.000	1.51	0.00	45.43	4.09
897	1038	0.320771	TTCCTTGGCGAGTTGCTCTC	60.321	55.000	1.51	0.00	45.43	3.20
898	1039	1.188219	TCCTTGGCGAGTTGCTCTCT	61.188	55.000	1.51	0.00	45.43	3.10
899	1040	0.532573	CCTTGGCGAGTTGCTCTCTA	59.467	55.000	1.51	0.00	45.43	2.43
900	1041	1.137872	CCTTGGCGAGTTGCTCTCTAT	59.862	52.381	1.51	0.00	45.43	1.98
901	1042	2.419297	CCTTGGCGAGTTGCTCTCTATT	60.419	50.000	1.51	0.00	45.43	1.73
902	1043	3.181475	CCTTGGCGAGTTGCTCTCTATTA	60.181	47.826	1.51	0.00	45.43	0.98
903	1044	3.717400	TGGCGAGTTGCTCTCTATTAG	57.283	47.619	1.51	0.00	45.43	1.73
904	1045	2.362397	TGGCGAGTTGCTCTCTATTAGG	59.638	50.000	1.51	0.00	45.43	2.69
905	1046	2.288518	GGCGAGTTGCTCTCTATTAGGG	60.289	54.545	1.51	0.00	45.43	3.53
906	1047	2.623889	GCGAGTTGCTCTCTATTAGGGA	59.376	50.000	0.00	0.00	40.75	4.20
907	1048	3.305064	GCGAGTTGCTCTCTATTAGGGAG	60.305	52.174	15.17	15.17	40.75	4.30
908	1049	3.254657	CGAGTTGCTCTCTATTAGGGAGG	59.745	52.174	19.84	4.63	40.75	4.30
909	1050	4.219919	GAGTTGCTCTCTATTAGGGAGGT	58.780	47.826	19.84	0.00	39.86	3.85
910	1051	4.625963	AGTTGCTCTCTATTAGGGAGGTT	58.374	43.478	19.84	0.00	0.00	3.50
911	1052	5.033522	AGTTGCTCTCTATTAGGGAGGTTT	58.966	41.667	19.84	0.00	0.00	3.27
912	1053	5.489278	AGTTGCTCTCTATTAGGGAGGTTTT	59.511	40.000	19.84	0.00	0.00	2.43
913	1054	6.012421	AGTTGCTCTCTATTAGGGAGGTTTTT	60.012	38.462	19.84	0.00	0.00	1.94
914	1055	5.745227	TGCTCTCTATTAGGGAGGTTTTTG	58.255	41.667	19.84	0.00	0.00	2.44
915	1056	5.487488	TGCTCTCTATTAGGGAGGTTTTTGA	59.513	40.000	19.84	0.00	0.00	2.69
916	1057	5.818336	GCTCTCTATTAGGGAGGTTTTTGAC	59.182	44.000	19.84	0.00	0.00	3.18
957	1098	3.933861	AAATGTAATCCGAGCCTTCCT	57.066	42.857	0.00	0.00	0.00	3.36
960	1101	0.876342	GTAATCCGAGCCTTCCTGCG	60.876	60.000	0.00	0.00	36.02	5.18
976	1117	2.380410	GCGACCGCAACATCGTTCT	61.380	57.895	9.73	0.00	40.49	3.01
978	1119	1.132640	GACCGCAACATCGTTCTGC	59.867	57.895	0.00	0.00	0.00	4.26
986	1127	3.641648	CAACATCGTTCTGCACCATTTT	58.358	40.909	0.00	0.00	0.00	1.82
1058	1199	0.810031	ACGATTGCACCACGATAGCC	60.810	55.000	12.13	0.00	42.67	3.93
1068	1209	2.621000	CGATAGCCGCACTTTCGC	59.379	61.111	4.18	0.00	41.76	4.70
1070	1211	0.594028	CGATAGCCGCACTTTCGCTA	60.594	55.000	4.18	0.00	41.76	4.26
1107	1248	1.387295	TTGTTTGTGCACATCCGCCA	61.387	50.000	22.39	10.06	0.00	5.69
1121	1262	0.037303	CCGCCATGGCCTTCATATCT	59.963	55.000	30.79	0.00	37.98	1.98
1252	1397	0.314935	ATCTGGCCACGCAAACAAAG	59.685	50.000	0.00	0.00	0.00	2.77
1258	1403	1.782044	CCACGCAAACAAAGGGAATG	58.218	50.000	0.00	0.00	0.00	2.67
1284	1429	9.690434	GCGAGAAGTATACATAAAAACTTTCAG	57.310	33.333	5.50	0.00	32.51	3.02
1404	1552	5.581874	ACAAAGGATGCAAAACTCAAAGTTG	59.418	36.000	0.00	0.00	38.66	3.16
1409	1557	3.497118	TGCAAAACTCAAAGTTGTCACG	58.503	40.909	0.00	0.00	38.66	4.35
1417	1565	6.256912	ACTCAAAGTTGTCACGGTTTTTAA	57.743	33.333	0.00	0.00	0.00	1.52
1441	1591	3.616956	ACAATCAGATTGCTCGGAGAA	57.383	42.857	21.22	0.00	43.98	2.87
1448	1598	8.602328	CAATCAGATTGCTCGGAGAATTATATC	58.398	37.037	10.28	0.00	34.09	1.63
1455	1605	5.465390	TGCTCGGAGAATTATATCCAAAACG	59.535	40.000	9.69	0.00	36.71	3.60
1460	1610	7.437267	TCGGAGAATTATATCCAAAACGAGTTC	59.563	37.037	0.00	0.00	36.71	3.01
1462	1612	7.307219	GGAGAATTATATCCAAAACGAGTTCGG	60.307	40.741	6.48	0.00	39.12	4.30
1484	1634	2.861462	TTTTGAGAGTGGCGTTTTGG	57.139	45.000	0.00	0.00	0.00	3.28
1487	1637	1.808411	TGAGAGTGGCGTTTTGGATC	58.192	50.000	0.00	0.00	0.00	3.36
1489	1639	2.003301	GAGAGTGGCGTTTTGGATCTC	58.997	52.381	0.00	0.00	0.00	2.75
1490	1640	0.721718	GAGTGGCGTTTTGGATCTCG	59.278	55.000	0.00	0.00	0.00	4.04
1491	1641	0.673644	AGTGGCGTTTTGGATCTCGG	60.674	55.000	0.00	0.00	0.00	4.63
1492	1642	2.038269	TGGCGTTTTGGATCTCGGC	61.038	57.895	0.00	0.00	46.17	5.54
1493	1643	2.038269	GGCGTTTTGGATCTCGGCA	61.038	57.895	0.00	0.00	45.50	5.69
1495	1645	0.028110	GCGTTTTGGATCTCGGCATC	59.972	55.000	0.00	0.00	0.00	3.91
1500	1650	1.756665	TGGATCTCGGCATCCATGG	59.243	57.895	4.97	4.97	46.34	3.66
1501	1651	0.763986	TGGATCTCGGCATCCATGGA	60.764	55.000	18.88	18.88	46.34	3.41
1503	1653	0.036577	GATCTCGGCATCCATGGAGG	60.037	60.000	22.10	22.10	39.47	4.30
1508	1658	2.433446	GCATCCATGGAGGCCGAT	59.567	61.111	35.69	8.89	44.91	4.18
1509	1659	1.228367	GCATCCATGGAGGCCGATT	60.228	57.895	35.69	8.09	44.91	3.34
1510	1660	0.825010	GCATCCATGGAGGCCGATTT	60.825	55.000	35.69	7.29	44.91	2.17
1512	1662	2.034124	CATCCATGGAGGCCGATTTTT	58.966	47.619	21.33	0.00	37.29	1.94
1569	1719	6.907741	TCAGAATGAAATACGTTGAAATGCA	58.092	32.000	0.00	0.00	45.97	3.96
1570	1720	7.366513	TCAGAATGAAATACGTTGAAATGCAA	58.633	30.769	0.00	0.00	45.97	4.08
1571	1721	7.325821	TCAGAATGAAATACGTTGAAATGCAAC	59.674	33.333	0.00	0.00	45.97	4.17
1603	1753	7.627298	AAAGACAAATTCATGATCTGAGAGG	57.373	36.000	0.00	0.00	34.68	3.69
1604	1754	6.556974	AGACAAATTCATGATCTGAGAGGA	57.443	37.500	0.00	0.00	34.68	3.71
1605	1755	7.139287	AGACAAATTCATGATCTGAGAGGAT	57.861	36.000	0.00	0.00	34.68	3.24
1606	1756	6.993308	AGACAAATTCATGATCTGAGAGGATG	59.007	38.462	0.00	0.00	34.68	3.51
1607	1757	6.896883	ACAAATTCATGATCTGAGAGGATGA	58.103	36.000	0.00	2.89	34.68	2.92
1608	1758	7.344134	ACAAATTCATGATCTGAGAGGATGAA	58.656	34.615	16.63	16.63	37.42	2.57
1609	1759	7.999545	ACAAATTCATGATCTGAGAGGATGAAT	59.000	33.333	18.76	18.76	42.72	2.57
1610	1760	9.503399	CAAATTCATGATCTGAGAGGATGAATA	57.497	33.333	22.17	6.35	40.97	1.75
1611	1761	9.727859	AAATTCATGATCTGAGAGGATGAATAG	57.272	33.333	22.17	0.00	40.97	1.73
1612	1762	7.852550	TTCATGATCTGAGAGGATGAATAGT	57.147	36.000	12.44	0.00	34.68	2.12
1613	1763	7.465353	TCATGATCTGAGAGGATGAATAGTC	57.535	40.000	4.25	0.00	0.00	2.59
1614	1764	7.240167	TCATGATCTGAGAGGATGAATAGTCT	58.760	38.462	4.25	0.00	0.00	3.24
1615	1765	7.394077	TCATGATCTGAGAGGATGAATAGTCTC	59.606	40.741	4.25	0.00	36.72	3.36
1616	1766	6.009589	TGATCTGAGAGGATGAATAGTCTCC	58.990	44.000	0.00	0.00	35.54	3.71
1617	1767	5.661503	TCTGAGAGGATGAATAGTCTCCT	57.338	43.478	9.89	9.89	42.12	3.69
1618	1768	5.384336	TCTGAGAGGATGAATAGTCTCCTG	58.616	45.833	13.56	3.10	39.52	3.86
1619	1769	5.103728	TCTGAGAGGATGAATAGTCTCCTGT	60.104	44.000	13.56	10.58	39.52	4.00
1620	1770	4.892345	TGAGAGGATGAATAGTCTCCTGTG	59.108	45.833	13.56	0.00	39.52	3.66
1621	1771	4.877773	AGAGGATGAATAGTCTCCTGTGT	58.122	43.478	13.56	0.05	39.52	3.72
1622	1772	5.276440	AGAGGATGAATAGTCTCCTGTGTT	58.724	41.667	13.56	0.00	39.52	3.32
1623	1773	6.436027	AGAGGATGAATAGTCTCCTGTGTTA	58.564	40.000	13.56	0.00	39.52	2.41
1624	1774	6.897966	AGAGGATGAATAGTCTCCTGTGTTAA	59.102	38.462	13.56	0.00	39.52	2.01
1625	1775	7.400339	AGAGGATGAATAGTCTCCTGTGTTAAA	59.600	37.037	13.56	0.00	39.52	1.52
1626	1776	7.918076	AGGATGAATAGTCTCCTGTGTTAAAA	58.082	34.615	9.46	0.00	38.00	1.52
1627	1777	8.383175	AGGATGAATAGTCTCCTGTGTTAAAAA	58.617	33.333	9.46	0.00	38.00	1.94
1628	1778	8.669243	GGATGAATAGTCTCCTGTGTTAAAAAG	58.331	37.037	0.00	0.00	0.00	2.27
1629	1779	7.435068	TGAATAGTCTCCTGTGTTAAAAAGC	57.565	36.000	0.00	0.00	0.00	3.51
1630	1780	6.430000	TGAATAGTCTCCTGTGTTAAAAAGCC	59.570	38.462	0.00	0.00	0.00	4.35
1631	1781	4.439253	AGTCTCCTGTGTTAAAAAGCCT	57.561	40.909	0.00	0.00	0.00	4.58
1632	1782	4.390264	AGTCTCCTGTGTTAAAAAGCCTC	58.610	43.478	0.00	0.00	0.00	4.70
1633	1783	3.186613	GTCTCCTGTGTTAAAAAGCCTCG	59.813	47.826	0.00	0.00	0.00	4.63
1634	1784	2.484264	CTCCTGTGTTAAAAAGCCTCGG	59.516	50.000	0.00	0.00	0.00	4.63
1635	1785	2.105134	TCCTGTGTTAAAAAGCCTCGGA	59.895	45.455	0.00	0.00	0.00	4.55
1636	1786	3.081804	CCTGTGTTAAAAAGCCTCGGAT	58.918	45.455	0.00	0.00	0.00	4.18
1637	1787	3.506067	CCTGTGTTAAAAAGCCTCGGATT	59.494	43.478	0.00	0.00	0.00	3.01
1638	1788	4.022329	CCTGTGTTAAAAAGCCTCGGATTT	60.022	41.667	0.00	0.00	35.04	2.17
1639	1789	5.182380	CCTGTGTTAAAAAGCCTCGGATTTA	59.818	40.000	0.00	0.00	32.15	1.40
1640	1790	6.127730	CCTGTGTTAAAAAGCCTCGGATTTAT	60.128	38.462	0.00	0.00	32.15	1.40
1641	1791	6.848451	TGTGTTAAAAAGCCTCGGATTTATC	58.152	36.000	0.00	0.00	32.15	1.75
1642	1792	6.657541	TGTGTTAAAAAGCCTCGGATTTATCT	59.342	34.615	0.00	0.00	32.15	1.98
1643	1793	7.175990	TGTGTTAAAAAGCCTCGGATTTATCTT	59.824	33.333	0.00	0.00	32.15	2.40
1644	1794	8.027189	GTGTTAAAAAGCCTCGGATTTATCTTT	58.973	33.333	0.00	0.00	32.15	2.52
1645	1795	8.581578	TGTTAAAAAGCCTCGGATTTATCTTTT	58.418	29.630	0.00	0.00	35.89	2.27
1646	1796	9.419297	GTTAAAAAGCCTCGGATTTATCTTTTT	57.581	29.630	12.91	12.91	42.61	1.94
1660	1810	4.251246	TTTTTGCACAGCCCTCGT	57.749	50.000	0.00	0.00	0.00	4.18
1661	1811	2.499214	TTTTTGCACAGCCCTCGTT	58.501	47.368	0.00	0.00	0.00	3.85
1662	1812	0.820871	TTTTTGCACAGCCCTCGTTT	59.179	45.000	0.00	0.00	0.00	3.60
1663	1813	0.383949	TTTTGCACAGCCCTCGTTTC	59.616	50.000	0.00	0.00	0.00	2.78
1664	1814	0.749818	TTTGCACAGCCCTCGTTTCA	60.750	50.000	0.00	0.00	0.00	2.69
1665	1815	1.165907	TTGCACAGCCCTCGTTTCAG	61.166	55.000	0.00	0.00	0.00	3.02
1666	1816	2.970974	GCACAGCCCTCGTTTCAGC	61.971	63.158	0.00	0.00	0.00	4.26
1667	1817	2.357517	ACAGCCCTCGTTTCAGCG	60.358	61.111	0.00	0.00	0.00	5.18
1668	1818	2.357517	CAGCCCTCGTTTCAGCGT	60.358	61.111	0.00	0.00	0.00	5.07
1669	1819	1.080093	CAGCCCTCGTTTCAGCGTA	60.080	57.895	0.00	0.00	0.00	4.42
1670	1820	0.460284	CAGCCCTCGTTTCAGCGTAT	60.460	55.000	0.00	0.00	0.00	3.06
1671	1821	0.249398	AGCCCTCGTTTCAGCGTATT	59.751	50.000	0.00	0.00	0.00	1.89
1672	1822	1.084289	GCCCTCGTTTCAGCGTATTT	58.916	50.000	0.00	0.00	0.00	1.40
1673	1823	1.467342	GCCCTCGTTTCAGCGTATTTT	59.533	47.619	0.00	0.00	0.00	1.82
1674	1824	2.727916	GCCCTCGTTTCAGCGTATTTTG	60.728	50.000	0.00	0.00	0.00	2.44
1675	1825	2.482721	CCCTCGTTTCAGCGTATTTTGT	59.517	45.455	0.00	0.00	0.00	2.83
1676	1826	3.424433	CCCTCGTTTCAGCGTATTTTGTC	60.424	47.826	0.00	0.00	0.00	3.18
1677	1827	3.424433	CCTCGTTTCAGCGTATTTTGTCC	60.424	47.826	0.00	0.00	0.00	4.02
1678	1828	2.481185	TCGTTTCAGCGTATTTTGTCCC	59.519	45.455	0.00	0.00	0.00	4.46
1679	1829	2.723618	CGTTTCAGCGTATTTTGTCCCG	60.724	50.000	0.00	0.00	0.00	5.14
1680	1830	2.459060	TTCAGCGTATTTTGTCCCGA	57.541	45.000	0.00	0.00	0.00	5.14
1681	1831	2.459060	TCAGCGTATTTTGTCCCGAA	57.541	45.000	0.00	0.00	0.00	4.30
1682	1832	2.768698	TCAGCGTATTTTGTCCCGAAA	58.231	42.857	0.00	0.00	0.00	3.46
1683	1833	3.139850	TCAGCGTATTTTGTCCCGAAAA	58.860	40.909	0.00	0.00	0.00	2.29
1684	1834	3.754323	TCAGCGTATTTTGTCCCGAAAAT	59.246	39.130	0.00	0.00	38.69	1.82
1685	1835	4.216687	TCAGCGTATTTTGTCCCGAAAATT	59.783	37.500	0.00	0.00	36.94	1.82
1686	1836	4.920927	CAGCGTATTTTGTCCCGAAAATTT	59.079	37.500	0.00	0.00	36.94	1.82
1687	1837	6.072618	TCAGCGTATTTTGTCCCGAAAATTTA	60.073	34.615	0.00	0.00	36.94	1.40
1688	1838	6.033091	CAGCGTATTTTGTCCCGAAAATTTAC	59.967	38.462	0.00	0.00	36.94	2.01
1689	1839	5.857517	GCGTATTTTGTCCCGAAAATTTACA	59.142	36.000	0.00	0.00	36.94	2.41
1690	1840	6.183359	GCGTATTTTGTCCCGAAAATTTACAC	60.183	38.462	0.00	0.00	36.94	2.90
1691	1841	6.856938	CGTATTTTGTCCCGAAAATTTACACA	59.143	34.615	0.00	0.00	36.94	3.72
1692	1842	7.149096	CGTATTTTGTCCCGAAAATTTACACAC	60.149	37.037	0.00	0.00	36.94	3.82
1693	1843	4.571372	TTGTCCCGAAAATTTACACACC	57.429	40.909	0.00	0.00	0.00	4.16
1694	1844	3.822940	TGTCCCGAAAATTTACACACCT	58.177	40.909	0.00	0.00	0.00	4.00
1695	1845	3.566322	TGTCCCGAAAATTTACACACCTG	59.434	43.478	0.00	0.00	0.00	4.00
1696	1846	3.816523	GTCCCGAAAATTTACACACCTGA	59.183	43.478	0.00	0.00	0.00	3.86
1697	1847	4.069304	TCCCGAAAATTTACACACCTGAG	58.931	43.478	0.00	0.00	0.00	3.35
1698	1848	3.818773	CCCGAAAATTTACACACCTGAGT	59.181	43.478	0.00	0.00	0.00	3.41
1699	1849	4.998672	CCCGAAAATTTACACACCTGAGTA	59.001	41.667	0.00	0.00	0.00	2.59
1700	1850	5.646360	CCCGAAAATTTACACACCTGAGTAT	59.354	40.000	0.00	0.00	0.00	2.12
1701	1851	6.150474	CCCGAAAATTTACACACCTGAGTATT	59.850	38.462	0.00	0.00	0.00	1.89
1702	1852	7.334921	CCCGAAAATTTACACACCTGAGTATTA	59.665	37.037	0.00	0.00	0.00	0.98
1703	1853	8.889717	CCGAAAATTTACACACCTGAGTATTAT	58.110	33.333	0.00	0.00	0.00	1.28
1704	1854	9.702726	CGAAAATTTACACACCTGAGTATTATG	57.297	33.333	0.00	0.00	0.00	1.90
1705	1855	9.503427	GAAAATTTACACACCTGAGTATTATGC	57.497	33.333	0.00	0.00	0.00	3.14
1706	1856	7.568199	AATTTACACACCTGAGTATTATGCC	57.432	36.000	0.00	0.00	0.00	4.40
1707	1857	5.950544	TTACACACCTGAGTATTATGCCT	57.049	39.130	0.00	0.00	0.00	4.75
1708	1858	4.844349	ACACACCTGAGTATTATGCCTT	57.156	40.909	0.00	0.00	0.00	4.35
1709	1859	4.770795	ACACACCTGAGTATTATGCCTTC	58.229	43.478	0.00	0.00	0.00	3.46
1710	1860	4.225042	ACACACCTGAGTATTATGCCTTCA	59.775	41.667	0.00	0.00	0.00	3.02
1711	1861	5.104360	ACACACCTGAGTATTATGCCTTCAT	60.104	40.000	0.00	0.00	36.73	2.57
1712	1862	6.099701	ACACACCTGAGTATTATGCCTTCATA	59.900	38.462	0.00	0.00	34.22	2.15
1713	1863	7.164122	CACACCTGAGTATTATGCCTTCATAT	58.836	38.462	0.00	0.00	35.30	1.78
1714	1864	8.314021	CACACCTGAGTATTATGCCTTCATATA	58.686	37.037	0.00	0.00	35.30	0.86
1715	1865	9.051259	ACACCTGAGTATTATGCCTTCATATAT	57.949	33.333	0.00	0.00	35.30	0.86
1716	1866	9.539825	CACCTGAGTATTATGCCTTCATATATC	57.460	37.037	0.00	0.00	35.30	1.63
1717	1867	9.499369	ACCTGAGTATTATGCCTTCATATATCT	57.501	33.333	0.00	0.00	35.30	1.98
1718	1868	9.979578	CCTGAGTATTATGCCTTCATATATCTC	57.020	37.037	0.00	0.00	35.30	2.75
1792	1942	9.685828	ATGAATTTTGAATTTTGCATTTGAAGG	57.314	25.926	0.00	0.00	0.00	3.46
1793	1943	7.648510	TGAATTTTGAATTTTGCATTTGAAGGC	59.351	29.630	0.00	0.00	36.03	4.35
1794	1944	5.435820	TTTGAATTTTGCATTTGAAGGCC	57.564	34.783	0.00	0.00	34.24	5.19
1795	1945	4.354893	TGAATTTTGCATTTGAAGGCCT	57.645	36.364	0.00	0.00	34.24	5.19
1796	1946	4.317488	TGAATTTTGCATTTGAAGGCCTC	58.683	39.130	5.23	0.00	34.24	4.70
1797	1947	2.437200	TTTTGCATTTGAAGGCCTCG	57.563	45.000	5.23	0.00	34.24	4.63
1798	1948	1.614996	TTTGCATTTGAAGGCCTCGA	58.385	45.000	5.23	0.00	34.24	4.04
1799	1949	1.614996	TTGCATTTGAAGGCCTCGAA	58.385	45.000	5.23	6.53	34.24	3.71
1800	1950	1.167851	TGCATTTGAAGGCCTCGAAG	58.832	50.000	5.23	0.00	34.24	3.79
1801	1951	1.271325	TGCATTTGAAGGCCTCGAAGA	60.271	47.619	5.23	0.00	34.24	2.87
1802	1952	1.131315	GCATTTGAAGGCCTCGAAGAC	59.869	52.381	5.23	0.00	30.60	3.01
1803	1953	1.740025	CATTTGAAGGCCTCGAAGACC	59.260	52.381	5.23	0.00	30.60	3.85
1813	1963	3.403057	CGAAGACCACGCACGGTG	61.403	66.667	3.15	3.15	46.57	4.94
1826	1976	2.125673	CGGTGTCGTCCCATCACC	60.126	66.667	0.00	0.00	45.46	4.02
1829	1982	4.429212	TGTCGTCCCATCACCGCG	62.429	66.667	0.00	0.00	0.00	6.46
1843	1996	1.209127	CCGCGTCGGCATTTCTTTT	59.791	52.632	4.92	0.00	41.17	2.27
1917	2078	1.541015	GGCAAGCCAAAACCTCCAAAG	60.541	52.381	6.14	0.00	35.81	2.77
1938	2102	0.179020	CAATAATGGCGGGCTCTCCA	60.179	55.000	0.00	0.00	36.70	3.86
1969	2139	1.132977	CAAACCCCAAACCCTAACCCT	60.133	52.381	0.00	0.00	0.00	4.34
1980	2169	1.207791	CCTAACCCTCACAGCCTCAT	58.792	55.000	0.00	0.00	0.00	2.90
2270	2997	6.448369	TTCCCCATCTCTCTCAAACTTTTA	57.552	37.500	0.00	0.00	0.00	1.52
2332	3059	2.888534	GGTCGCGCGCTTTGGATA	60.889	61.111	30.48	1.08	0.00	2.59
2371	3159	2.223829	GCTGCTCTAAGACGAATGGCTA	60.224	50.000	0.00	0.00	0.00	3.93
2414	3202	3.615155	AGCTCTGGGATCTTAGTTTTGC	58.385	45.455	0.00	0.00	0.00	3.68
2474	3276	3.508840	GCCCATTTGGTCCGAGCG	61.509	66.667	0.00	0.00	36.04	5.03
2513	3315	2.092429	TGGCTATTGGTCTGTGGAATCC	60.092	50.000	0.00	0.00	0.00	3.01
2534	3341	4.072839	CCTAAGTTTCAGTTCAGTTCCCC	58.927	47.826	0.00	0.00	0.00	4.81
2535	3342	3.953542	AAGTTTCAGTTCAGTTCCCCT	57.046	42.857	0.00	0.00	0.00	4.79
2536	3343	3.953542	AGTTTCAGTTCAGTTCCCCTT	57.046	42.857	0.00	0.00	0.00	3.95
2537	3344	5.382664	AAGTTTCAGTTCAGTTCCCCTTA	57.617	39.130	0.00	0.00	0.00	2.69
2538	3345	5.382664	AGTTTCAGTTCAGTTCCCCTTAA	57.617	39.130	0.00	0.00	0.00	1.85
2539	3346	5.953571	AGTTTCAGTTCAGTTCCCCTTAAT	58.046	37.500	0.00	0.00	0.00	1.40
2540	3347	6.004574	AGTTTCAGTTCAGTTCCCCTTAATC	58.995	40.000	0.00	0.00	0.00	1.75
2541	3348	4.569719	TCAGTTCAGTTCCCCTTAATCC	57.430	45.455	0.00	0.00	0.00	3.01
2559	3366	7.255381	CCTTAATCCCTTATGTTTGCTCATCTG	60.255	40.741	0.00	0.00	0.00	2.90
2560	3367	3.282021	TCCCTTATGTTTGCTCATCTGC	58.718	45.455	0.00	0.00	0.00	4.26
2561	3368	3.054139	TCCCTTATGTTTGCTCATCTGCT	60.054	43.478	0.00	0.00	0.00	4.24
2562	3369	3.066342	CCCTTATGTTTGCTCATCTGCTG	59.934	47.826	0.00	0.00	0.00	4.41
2563	3370	3.488721	CCTTATGTTTGCTCATCTGCTGC	60.489	47.826	0.00	0.00	0.00	5.25
2564	3371	0.450583	ATGTTTGCTCATCTGCTGCG	59.549	50.000	0.00	0.00	0.00	5.18
2565	3372	1.136147	GTTTGCTCATCTGCTGCGG	59.864	57.895	0.95	0.95	0.00	5.69
2602	3622	2.842457	TGCTGCAGGTATATGCTGAAG	58.158	47.619	17.12	0.00	46.63	3.02
2656	3680	4.383118	CGAGGTGTATTCATATCCATCCCC	60.383	50.000	0.00	0.00	0.00	4.81
2687	3711	3.364549	CCATTCTACTTGGGATTTGCCA	58.635	45.455	0.00	0.00	38.95	4.92
2730	3758	8.414778	AGAAGTGGTATAAGTCTATAACAGCAC	58.585	37.037	0.00	0.00	38.18	4.40
2738	3766	4.430908	AGTCTATAACAGCACGGCTTTAC	58.569	43.478	0.00	0.00	36.40	2.01
2860	3897	5.245531	TCTAGTACCAATGGTTGCTTTCTG	58.754	41.667	11.41	2.24	37.09	3.02
2872	7095	1.334054	GCTTTCTGCATTGAGTTGCG	58.666	50.000	0.00	0.00	45.77	4.85
2964	7191	1.701031	TTTGTCAGGGGCGTTGGAGA	61.701	55.000	0.00	0.00	0.00	3.71
2971	7198	2.046285	GGGCGTTGGAGATTGGGTG	61.046	63.158	0.00	0.00	0.00	4.61
3075	7310	7.067494	GGGTAATAGTTTTCATGATTGCTCACT	59.933	37.037	0.00	0.00	33.22	3.41
3095	7334	5.306937	TCACTTGTCCTCTGGAATCTGTTAA	59.693	40.000	0.00	0.00	31.38	2.01
3156	7400	6.889722	CCCCCTTCAGTTTTATCAATACTCAA	59.110	38.462	0.00	0.00	0.00	3.02
3318	7605	1.862162	TTTTTAGGGTGGGGGTGGG	59.138	57.895	0.00	0.00	0.00	4.61
3319	7606	1.741692	TTTTTAGGGTGGGGGTGGGG	61.742	60.000	0.00	0.00	0.00	4.96
3320	7607	4.705216	TTAGGGTGGGGGTGGGGG	62.705	72.222	0.00	0.00	0.00	5.40
3855	8499	5.577945	ACCCAATACGTTTTATACTCACGTG	59.422	40.000	9.94	9.94	46.26	4.49
4553	9420	4.010349	CCTTTGAACTTATCTGGTCCACC	58.990	47.826	0.00	0.00	0.00	4.61
4661	9529	5.809001	ACCAGATCTTGCTCATTACTTTGA	58.191	37.500	0.00	0.00	0.00	2.69
4801	9679	3.209410	CAAGCATAGACTTGGGGCTTAG	58.791	50.000	0.00	0.00	42.44	2.18
4809	9687	1.557832	ACTTGGGGCTTAGCGTATGAA	59.442	47.619	0.00	0.00	0.00	2.57
4849	9727	6.071320	ACCTAACAGAAAAAGGCAAAGAGAT	58.929	36.000	0.00	0.00	33.42	2.75
5195	10370	9.862149	TTCCATAAGAAAAATATTACTCCCTCC	57.138	33.333	0.00	0.00	0.00	4.30
5196	10371	8.154856	TCCATAAGAAAAATATTACTCCCTCCG	58.845	37.037	0.00	0.00	0.00	4.63
5197	10372	7.937394	CCATAAGAAAAATATTACTCCCTCCGT	59.063	37.037	0.00	0.00	0.00	4.69
5198	10373	8.989980	CATAAGAAAAATATTACTCCCTCCGTC	58.010	37.037	0.00	0.00	0.00	4.79
5199	10374	5.926663	AGAAAAATATTACTCCCTCCGTCC	58.073	41.667	0.00	0.00	0.00	4.79
5200	10375	4.701651	AAAATATTACTCCCTCCGTCCC	57.298	45.455	0.00	0.00	0.00	4.46
5201	10376	3.339713	AATATTACTCCCTCCGTCCCA	57.660	47.619	0.00	0.00	0.00	4.37
5202	10377	3.562108	ATATTACTCCCTCCGTCCCAT	57.438	47.619	0.00	0.00	0.00	4.00
5203	10378	4.687262	ATATTACTCCCTCCGTCCCATA	57.313	45.455	0.00	0.00	0.00	2.74
5204	10379	2.852714	TTACTCCCTCCGTCCCATAA	57.147	50.000	0.00	0.00	0.00	1.90
5205	10380	3.339713	TTACTCCCTCCGTCCCATAAT	57.660	47.619	0.00	0.00	0.00	1.28
5206	10381	4.474303	TTACTCCCTCCGTCCCATAATA	57.526	45.455	0.00	0.00	0.00	0.98
5207	10382	3.562108	ACTCCCTCCGTCCCATAATAT	57.438	47.619	0.00	0.00	0.00	1.28
5208	10383	4.687262	ACTCCCTCCGTCCCATAATATA	57.313	45.455	0.00	0.00	0.00	0.86
5209	10384	5.019657	ACTCCCTCCGTCCCATAATATAA	57.980	43.478	0.00	0.00	0.00	0.98
5210	10385	5.024118	ACTCCCTCCGTCCCATAATATAAG	58.976	45.833	0.00	0.00	0.00	1.73
5211	10386	5.222484	ACTCCCTCCGTCCCATAATATAAGA	60.222	44.000	0.00	0.00	0.00	2.10
5212	10387	5.269991	TCCCTCCGTCCCATAATATAAGAG	58.730	45.833	0.00	0.00	0.00	2.85
5213	10388	4.141914	CCCTCCGTCCCATAATATAAGAGC	60.142	50.000	0.00	0.00	0.00	4.09
5214	10389	4.440250	CCTCCGTCCCATAATATAAGAGCG	60.440	50.000	0.00	0.00	0.00	5.03
5215	10390	4.084287	TCCGTCCCATAATATAAGAGCGT	58.916	43.478	0.00	0.00	0.00	5.07
5216	10391	4.525487	TCCGTCCCATAATATAAGAGCGTT	59.475	41.667	0.00	0.00	0.00	4.84
5217	10392	5.011329	TCCGTCCCATAATATAAGAGCGTTT	59.989	40.000	0.00	0.00	0.00	3.60
5218	10393	5.699458	CCGTCCCATAATATAAGAGCGTTTT	59.301	40.000	0.00	0.00	0.00	2.43
5219	10394	6.128634	CCGTCCCATAATATAAGAGCGTTTTC	60.129	42.308	0.00	0.00	0.00	2.29
5261	10436	8.888579	AGAAAACACTCTTATATTATGGGACG	57.111	34.615	0.00	0.00	0.00	4.79
5262	10437	7.931948	AGAAAACACTCTTATATTATGGGACGG	59.068	37.037	0.00	0.00	0.00	4.79
5263	10438	6.989155	AACACTCTTATATTATGGGACGGA	57.011	37.500	0.00	0.00	0.00	4.69
5264	10439	6.591750	ACACTCTTATATTATGGGACGGAG	57.408	41.667	0.00	0.00	0.00	4.63
5265	10440	5.480772	ACACTCTTATATTATGGGACGGAGG	59.519	44.000	0.00	0.00	0.00	4.30
5266	10441	5.024118	ACTCTTATATTATGGGACGGAGGG	58.976	45.833	0.00	0.00	0.00	4.30
5267	10442	5.222484	ACTCTTATATTATGGGACGGAGGGA	60.222	44.000	0.00	0.00	0.00	4.20
5404	10583	3.662759	ACACTTGACTTTCCCTTTCCA	57.337	42.857	0.00	0.00	0.00	3.53
5649	13969	7.251321	AGGATCATAATAAGGCTGTCTTAGG	57.749	40.000	7.86	0.00	40.85	2.69
5739	14249	2.481441	ACTGAGGATTGGGAGTATGCA	58.519	47.619	0.00	0.00	0.00	3.96
6078	14642	1.615392	GATTGCTCCCTTTTGTGCAGT	59.385	47.619	0.00	0.00	36.75	4.40
6159	14725	7.741554	AGAGGTTAGTTGGATTGAGAGTTAT	57.258	36.000	0.00	0.00	0.00	1.89
6160	14726	7.560368	AGAGGTTAGTTGGATTGAGAGTTATG	58.440	38.462	0.00	0.00	0.00	1.90
6161	14727	7.181125	AGAGGTTAGTTGGATTGAGAGTTATGT	59.819	37.037	0.00	0.00	0.00	2.29
6162	14728	8.375493	AGGTTAGTTGGATTGAGAGTTATGTA	57.625	34.615	0.00	0.00	0.00	2.29
6163	14729	8.258708	AGGTTAGTTGGATTGAGAGTTATGTAC	58.741	37.037	0.00	0.00	0.00	2.90
6164	14730	8.258708	GGTTAGTTGGATTGAGAGTTATGTACT	58.741	37.037	0.00	0.00	40.71	2.73
6165	14731	9.654663	GTTAGTTGGATTGAGAGTTATGTACTT	57.345	33.333	0.00	0.00	37.17	2.24
6172	14738	9.469807	GGATTGAGAGTTATGTACTTATGTGAG	57.530	37.037	0.00	0.00	37.17	3.51
6287	14887	7.284489	AGACAACCAAAATACACTGCTAAAAGA	59.716	33.333	0.00	0.00	0.00	2.52
6331	14969	6.017026	GGCTCTAAATTAAATGCCCTGTACTC	60.017	42.308	0.00	0.00	34.81	2.59
6343	15021	4.229582	TGCCCTGTACTCCTGGATTAATTT	59.770	41.667	0.00	0.00	34.15	1.82
6480	15161	8.065473	TGAACTGTTCATATAATGTGCCAAAT	57.935	30.769	18.69	0.00	34.08	2.32
6760	15443	3.415212	TCCCAGTTCTTCATGCTTTCAG	58.585	45.455	0.00	0.00	0.00	3.02
6952	16431	4.467795	AGACATAAGCTTGAGCCTGTAGAA	59.532	41.667	9.86	0.00	43.38	2.10
7030	16509	6.613233	TGTGGTTATTTTAGCAACAATACGG	58.387	36.000	0.00	0.00	0.00	4.02
7116	16596	5.995897	AGTTGAAGGGATGTAAACACTGTAC	59.004	40.000	0.00	0.00	0.00	2.90
7148	16628	3.122948	AGAGCGTTAAAACAGCGTATGTG	59.877	43.478	0.00	0.00	43.00	3.21
7169	16649	2.742530	GCTCTTCTCATGAAGCCTGGAG	60.743	54.545	5.92	5.09	46.81	3.86
7268	16754	6.942576	GGATGTCAGTTGTATGCCCTATTAAT	59.057	38.462	0.00	0.00	0.00	1.40
7427	16917	0.250640	AACTTCTCTGCTGGTGCTGG	60.251	55.000	0.00	0.00	40.48	4.85
7666	17156	3.348119	TCTTGCTGTCACGAGTCTCTAT	58.652	45.455	0.00	0.00	0.00	1.98
7713	17203	2.766313	GTACACCATGCTTGTGAGTCA	58.234	47.619	7.48	0.00	37.18	3.41
7750	17318	8.988934	TCAAGTCATACAATGTTCTTTACTCAC	58.011	33.333	0.00	0.00	0.00	3.51
7757	17325	5.236478	ACAATGTTCTTTACTCACTGGAACG	59.764	40.000	0.00	0.00	39.05	3.95
7769	17337	1.507141	CTGGAACGGTTGTGACCAGC	61.507	60.000	11.87	0.00	46.91	4.85
7944	17555	1.299976	GCGGAAGGATGAACACCCT	59.700	57.895	0.00	0.00	0.00	4.34
8085	17698	2.106338	TCACTGAACATGTGACCACCAT	59.894	45.455	0.00	0.00	39.23	3.55
8318	18463	6.600822	AGATTGTGGTGTTGAGGAGATAATTG	59.399	38.462	0.00	0.00	0.00	2.32
8319	18464	5.497464	TGTGGTGTTGAGGAGATAATTGA	57.503	39.130	0.00	0.00	0.00	2.57
8320	18465	5.875224	TGTGGTGTTGAGGAGATAATTGAA	58.125	37.500	0.00	0.00	0.00	2.69
8321	18466	5.705441	TGTGGTGTTGAGGAGATAATTGAAC	59.295	40.000	0.00	0.00	0.00	3.18
8322	18467	5.705441	GTGGTGTTGAGGAGATAATTGAACA	59.295	40.000	0.00	0.00	0.00	3.18
8323	18468	6.375455	GTGGTGTTGAGGAGATAATTGAACAT	59.625	38.462	0.00	0.00	0.00	2.71
8324	18469	6.375174	TGGTGTTGAGGAGATAATTGAACATG	59.625	38.462	0.00	0.00	0.00	3.21
8325	18470	6.261118	GTGTTGAGGAGATAATTGAACATGC	58.739	40.000	0.00	0.00	0.00	4.06
8326	18471	5.945191	TGTTGAGGAGATAATTGAACATGCA	59.055	36.000	0.00	0.00	0.00	3.96
8327	18472	6.127925	TGTTGAGGAGATAATTGAACATGCAC	60.128	38.462	0.00	0.00	0.00	4.57
8328	18473	5.748402	TGAGGAGATAATTGAACATGCACT	58.252	37.500	0.00	0.00	0.00	4.40
8329	18474	6.182627	TGAGGAGATAATTGAACATGCACTT	58.817	36.000	0.00	0.00	0.00	3.16
8330	18475	6.660521	TGAGGAGATAATTGAACATGCACTTT	59.339	34.615	0.00	0.00	0.00	2.66
8331	18476	7.177216	TGAGGAGATAATTGAACATGCACTTTT	59.823	33.333	0.00	0.00	0.00	2.27
8332	18477	7.542025	AGGAGATAATTGAACATGCACTTTTC	58.458	34.615	0.00	0.00	0.00	2.29
8333	18478	7.395489	AGGAGATAATTGAACATGCACTTTTCT	59.605	33.333	0.00	0.00	0.00	2.52
8334	18479	7.699812	GGAGATAATTGAACATGCACTTTTCTC	59.300	37.037	11.53	11.53	36.13	2.87
8335	18480	8.345724	AGATAATTGAACATGCACTTTTCTCT	57.654	30.769	0.00	0.00	0.00	3.10
8336	18481	8.800332	AGATAATTGAACATGCACTTTTCTCTT	58.200	29.630	0.00	0.00	0.00	2.85
8337	18482	8.752766	ATAATTGAACATGCACTTTTCTCTTG	57.247	30.769	0.00	0.00	0.00	3.02
8338	18483	3.968649	TGAACATGCACTTTTCTCTTGC	58.031	40.909	0.00	0.00	36.76	4.01
8342	18487	2.057137	TGCACTTTTCTCTTGCACCT	57.943	45.000	0.00	0.00	41.29	4.00
8343	18488	1.677576	TGCACTTTTCTCTTGCACCTG	59.322	47.619	0.00	0.00	41.29	4.00
8344	18489	1.000938	GCACTTTTCTCTTGCACCTGG	60.001	52.381	0.00	0.00	36.22	4.45
8345	18490	1.610522	CACTTTTCTCTTGCACCTGGG	59.389	52.381	0.00	0.00	0.00	4.45
8346	18491	0.600057	CTTTTCTCTTGCACCTGGGC	59.400	55.000	0.00	0.00	0.00	5.36
8347	18492	0.827507	TTTTCTCTTGCACCTGGGCC	60.828	55.000	0.00	0.00	0.00	5.80
8348	18493	2.005606	TTTCTCTTGCACCTGGGCCA	62.006	55.000	5.85	5.85	0.00	5.36
8349	18494	2.005606	TTCTCTTGCACCTGGGCCAA	62.006	55.000	8.04	0.00	0.00	4.52
8350	18495	1.975407	CTCTTGCACCTGGGCCAAG	60.975	63.158	8.04	17.43	0.00	3.61
8351	18496	3.688159	CTTGCACCTGGGCCAAGC	61.688	66.667	8.04	12.98	0.00	4.01
8352	18497	4.223125	TTGCACCTGGGCCAAGCT	62.223	61.111	21.18	0.00	0.00	3.74
8353	18498	4.980702	TGCACCTGGGCCAAGCTG	62.981	66.667	21.18	0.23	0.00	4.24
8354	18499	4.982701	GCACCTGGGCCAAGCTGT	62.983	66.667	8.04	0.00	0.00	4.40
8355	18500	2.203538	CACCTGGGCCAAGCTGTT	60.204	61.111	8.04	0.00	0.00	3.16
8356	18501	2.116125	ACCTGGGCCAAGCTGTTC	59.884	61.111	8.04	0.00	0.00	3.18
8357	18502	2.437897	CCTGGGCCAAGCTGTTCT	59.562	61.111	8.04	0.00	0.00	3.01
8358	18503	1.975407	CCTGGGCCAAGCTGTTCTG	60.975	63.158	8.04	0.00	0.00	3.02
8359	18504	1.975407	CTGGGCCAAGCTGTTCTGG	60.975	63.158	8.04	0.00	0.00	3.86
8360	18505	2.116125	GGGCCAAGCTGTTCTGGT	59.884	61.111	4.39	0.00	0.00	4.00
8361	18506	1.973812	GGGCCAAGCTGTTCTGGTC	60.974	63.158	4.39	1.05	0.00	4.02
8362	18507	1.073897	GGCCAAGCTGTTCTGGTCT	59.926	57.895	0.00	0.00	0.00	3.85
8367	18512	2.486191	CCAAGCTGTTCTGGTCTGAACT	60.486	50.000	17.31	0.67	44.63	3.01
8440	18656	6.629128	TGTACATATTGGTTGATGGCAAAAG	58.371	36.000	0.00	0.00	35.42	2.27
8629	18923	3.070734	CCCCCTGAGATCACTTACATCAG	59.929	52.174	0.00	0.00	37.68	2.90
8630	18924	3.963374	CCCCTGAGATCACTTACATCAGA	59.037	47.826	7.30	0.00	39.80	3.27
8631	18925	4.592351	CCCCTGAGATCACTTACATCAGAT	59.408	45.833	7.30	0.00	39.80	2.90
8632	18926	5.279406	CCCCTGAGATCACTTACATCAGATC	60.279	48.000	7.30	0.00	39.80	2.75
8633	18927	5.303845	CCCTGAGATCACTTACATCAGATCA	59.696	44.000	7.30	0.00	39.80	2.92
8634	18928	6.215121	CCTGAGATCACTTACATCAGATCAC	58.785	44.000	7.30	0.00	39.80	3.06
8635	18929	6.040729	CCTGAGATCACTTACATCAGATCACT	59.959	42.308	7.30	0.00	39.80	3.41
8636	18930	7.415592	TGAGATCACTTACATCAGATCACTT	57.584	36.000	0.00	0.00	39.39	3.16
8637	18931	8.525290	TGAGATCACTTACATCAGATCACTTA	57.475	34.615	0.00	0.00	39.39	2.24
8710	19004	1.344763	ACAGGAGTTGTTCTTCGGGAG	59.655	52.381	0.00	0.00	36.31	4.30
8725	19019	2.626266	TCGGGAGCATATCGAAAAGCTA	59.374	45.455	8.55	0.00	37.48	3.32
8812	19143	0.179111	TCCGTGATGGCATTCGTCTC	60.179	55.000	18.98	1.70	37.80	3.36
8947	19280	2.480555	CAAATGTGGACGCGAGCC	59.519	61.111	15.93	14.91	0.00	4.70
8966	19300	2.825532	GCCCCTGTTTTCAATCTTGCTA	59.174	45.455	0.00	0.00	0.00	3.49
8978	19312	6.925610	TCAATCTTGCTACATTGTCCATAC	57.074	37.500	0.00	0.00	32.67	2.39
9009	19343	1.936203	GCAAATGAAGCGGCACACAAT	60.936	47.619	1.45	0.00	0.00	2.71
9010	19344	1.722464	CAAATGAAGCGGCACACAATG	59.278	47.619	1.45	0.26	0.00	2.82
9011	19345	0.961019	AATGAAGCGGCACACAATGT	59.039	45.000	1.45	0.00	0.00	2.71
9057	19410	7.684317	TGTATCTGGATGAATTACACCCTAA	57.316	36.000	0.00	0.00	32.15	2.69
9066	19419	8.803235	GGATGAATTACACCCTAACTTTTCTTT	58.197	33.333	0.00	0.00	0.00	2.52
9068	19421	9.981114	ATGAATTACACCCTAACTTTTCTTTTG	57.019	29.630	0.00	0.00	0.00	2.44
9071	19424	3.964688	ACACCCTAACTTTTCTTTTGGGG	59.035	43.478	6.56	1.45	46.53	4.96
9077	19430	6.295067	CCCTAACTTTTCTTTTGGGGTGTATG	60.295	42.308	0.00	0.00	38.43	2.39
9110	19463	5.801380	TGTAACCCTCCTGAGTAATTCAAC	58.199	41.667	0.00	0.00	34.81	3.18
9116	19469	5.163258	CCCTCCTGAGTAATTCAACATAGCT	60.163	44.000	0.00	0.00	34.81	3.32
9120	19473	6.818644	TCCTGAGTAATTCAACATAGCTTGTC	59.181	38.462	0.00	0.00	37.68	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	100	3.229156	TTTGTCGCCGTCCGGACAT	62.229	57.895	32.80	0.00	37.50	3.06
128	145	1.371389	GTCGAGTCGGCGTGTTTCT	60.371	57.895	13.54	0.00	0.00	2.52
205	222	1.988846	AGTTTTCTCTTCTCCCTGGGG	59.011	52.381	14.00	2.42	0.00	4.96
211	228	2.028930	TCGCCTCAGTTTTCTCTTCTCC	60.029	50.000	0.00	0.00	0.00	3.71
266	285	1.444553	GACCGGAGCAAGTCGAGTG	60.445	63.158	9.46	0.00	0.00	3.51
479	555	0.396435	TTCTGTGATGTTGGGCGTCT	59.604	50.000	0.00	0.00	34.29	4.18
717	850	4.961511	GCACCAGACACGCGTCCA	62.962	66.667	9.86	0.00	43.73	4.02
746	881	3.390521	CAGCCACGCTCCCAGGTA	61.391	66.667	0.00	0.00	36.40	3.08
754	889	4.643387	GTTCACCCCAGCCACGCT	62.643	66.667	0.00	0.00	40.77	5.07
767	902	3.253838	CCCCTGGGGTTCGGTTCA	61.254	66.667	24.54	0.00	38.25	3.18
864	1005	2.241176	CCAAGGAAACCTAGCCATACCA	59.759	50.000	0.00	0.00	31.13	3.25
865	1006	2.932261	CCAAGGAAACCTAGCCATACC	58.068	52.381	0.00	0.00	31.13	2.73
866	1007	2.298610	GCCAAGGAAACCTAGCCATAC	58.701	52.381	0.00	0.00	31.13	2.39
867	1008	1.134220	CGCCAAGGAAACCTAGCCATA	60.134	52.381	0.00	0.00	31.71	2.74
868	1009	0.394352	CGCCAAGGAAACCTAGCCAT	60.394	55.000	0.00	0.00	31.71	4.40
869	1010	1.002624	CGCCAAGGAAACCTAGCCA	60.003	57.895	0.00	0.00	31.71	4.75
870	1011	0.744771	CTCGCCAAGGAAACCTAGCC	60.745	60.000	0.00	0.00	31.71	3.93
871	1012	0.036294	ACTCGCCAAGGAAACCTAGC	60.036	55.000	0.00	0.00	31.13	3.42
872	1013	2.076863	CAACTCGCCAAGGAAACCTAG	58.923	52.381	0.00	0.00	31.13	3.02
873	1014	1.880646	GCAACTCGCCAAGGAAACCTA	60.881	52.381	0.00	0.00	30.02	3.08
874	1015	1.172812	GCAACTCGCCAAGGAAACCT	61.173	55.000	0.00	0.00	31.19	3.50
875	1016	1.172812	AGCAACTCGCCAAGGAAACC	61.173	55.000	0.00	0.00	44.04	3.27
876	1017	0.238553	GAGCAACTCGCCAAGGAAAC	59.761	55.000	0.00	0.00	44.04	2.78
877	1018	0.108585	AGAGCAACTCGCCAAGGAAA	59.891	50.000	0.00	0.00	44.04	3.13
878	1019	0.320771	GAGAGCAACTCGCCAAGGAA	60.321	55.000	0.00	0.00	44.04	3.36
879	1020	1.293498	GAGAGCAACTCGCCAAGGA	59.707	57.895	0.00	0.00	44.04	3.36
880	1021	3.882025	GAGAGCAACTCGCCAAGG	58.118	61.111	0.00	0.00	44.04	3.61
887	1028	4.219919	ACCTCCCTAATAGAGAGCAACTC	58.780	47.826	0.00	3.25	45.22	3.01
888	1029	4.273300	ACCTCCCTAATAGAGAGCAACT	57.727	45.455	0.00	0.00	32.86	3.16
889	1030	5.360649	AAACCTCCCTAATAGAGAGCAAC	57.639	43.478	0.00	0.00	32.86	4.17
890	1031	6.012858	TCAAAAACCTCCCTAATAGAGAGCAA	60.013	38.462	0.00	0.00	32.86	3.91
891	1032	5.487488	TCAAAAACCTCCCTAATAGAGAGCA	59.513	40.000	0.00	0.00	32.86	4.26
892	1033	5.818336	GTCAAAAACCTCCCTAATAGAGAGC	59.182	44.000	0.00	0.00	32.86	4.09
893	1034	6.350103	GGTCAAAAACCTCCCTAATAGAGAG	58.650	44.000	0.00	0.00	45.45	3.20
894	1035	5.105064	CGGTCAAAAACCTCCCTAATAGAGA	60.105	44.000	0.00	0.00	46.87	3.10
895	1036	5.105064	TCGGTCAAAAACCTCCCTAATAGAG	60.105	44.000	0.00	0.00	46.87	2.43
896	1037	4.778958	TCGGTCAAAAACCTCCCTAATAGA	59.221	41.667	0.00	0.00	46.87	1.98
897	1038	5.093849	TCGGTCAAAAACCTCCCTAATAG	57.906	43.478	0.00	0.00	46.87	1.73
898	1039	4.533311	ACTCGGTCAAAAACCTCCCTAATA	59.467	41.667	0.00	0.00	46.87	0.98
899	1040	3.329814	ACTCGGTCAAAAACCTCCCTAAT	59.670	43.478	0.00	0.00	46.87	1.73
900	1041	2.707257	ACTCGGTCAAAAACCTCCCTAA	59.293	45.455	0.00	0.00	46.87	2.69
901	1042	2.332117	ACTCGGTCAAAAACCTCCCTA	58.668	47.619	0.00	0.00	46.87	3.53
902	1043	1.137697	ACTCGGTCAAAAACCTCCCT	58.862	50.000	0.00	0.00	46.87	4.20
903	1044	1.607148	CAACTCGGTCAAAAACCTCCC	59.393	52.381	0.00	0.00	46.87	4.30
904	1045	2.294979	ACAACTCGGTCAAAAACCTCC	58.705	47.619	0.00	0.00	46.87	4.30
905	1046	4.753107	TGATACAACTCGGTCAAAAACCTC	59.247	41.667	0.00	0.00	46.87	3.85
906	1047	4.710324	TGATACAACTCGGTCAAAAACCT	58.290	39.130	0.00	0.00	46.87	3.50
907	1048	4.514066	ACTGATACAACTCGGTCAAAAACC	59.486	41.667	0.00	0.00	45.45	3.27
908	1049	5.668558	ACTGATACAACTCGGTCAAAAAC	57.331	39.130	0.00	0.00	28.32	2.43
909	1050	5.917541	GACTGATACAACTCGGTCAAAAA	57.082	39.130	7.91	0.00	46.43	1.94
914	1055	1.798079	GCGGACTGATACAACTCGGTC	60.798	57.143	4.78	4.78	46.45	4.79
915	1056	0.172803	GCGGACTGATACAACTCGGT	59.827	55.000	0.00	0.00	37.46	4.69
916	1057	0.456221	AGCGGACTGATACAACTCGG	59.544	55.000	0.00	0.00	0.00	4.63
917	1058	2.279582	AAGCGGACTGATACAACTCG	57.720	50.000	0.00	0.00	0.00	4.18
918	1059	5.581085	ACATTTAAGCGGACTGATACAACTC	59.419	40.000	0.00	0.00	0.00	3.01
919	1060	5.488341	ACATTTAAGCGGACTGATACAACT	58.512	37.500	0.00	0.00	0.00	3.16
920	1061	5.796350	ACATTTAAGCGGACTGATACAAC	57.204	39.130	0.00	0.00	0.00	3.32
921	1062	7.225931	GGATTACATTTAAGCGGACTGATACAA	59.774	37.037	0.00	0.00	0.00	2.41
922	1063	6.704493	GGATTACATTTAAGCGGACTGATACA	59.296	38.462	0.00	0.00	0.00	2.29
923	1064	6.128902	CGGATTACATTTAAGCGGACTGATAC	60.129	42.308	0.00	0.00	0.00	2.24
924	1065	5.924254	CGGATTACATTTAAGCGGACTGATA	59.076	40.000	0.00	0.00	0.00	2.15
925	1066	4.750098	CGGATTACATTTAAGCGGACTGAT	59.250	41.667	0.00	0.00	0.00	2.90
926	1067	4.116961	CGGATTACATTTAAGCGGACTGA	58.883	43.478	0.00	0.00	0.00	3.41
927	1068	4.116961	TCGGATTACATTTAAGCGGACTG	58.883	43.478	0.00	0.00	30.50	3.51
978	1119	3.774282	CAATCGTTGCACAAAATGGTG	57.226	42.857	0.00	0.00	41.72	4.17
1000	1141	2.404215	CGGCGCTATGGGCATATATAC	58.596	52.381	7.64	0.00	43.41	1.47
1028	1169	0.948623	TGCAATCGTTGTCCAGACCG	60.949	55.000	0.00	0.00	0.00	4.79
1030	1171	0.517316	GGTGCAATCGTTGTCCAGAC	59.483	55.000	0.00	0.00	0.00	3.51
1035	1176	0.796312	ATCGTGGTGCAATCGTTGTC	59.204	50.000	0.00	0.00	0.00	3.18
1058	1199	3.455619	AAAATCACTAGCGAAAGTGCG	57.544	42.857	11.53	0.00	45.34	5.34
1101	1242	0.036732	GATATGAAGGCCATGGCGGA	59.963	55.000	29.90	13.87	43.06	5.54
1107	1248	4.404640	CACATGGAAGATATGAAGGCCAT	58.595	43.478	5.01	0.00	39.25	4.40
1121	1262	1.449423	CATCGTCCGCCACATGGAA	60.449	57.895	0.87	0.00	37.23	3.53
1144	1285	9.419297	GCAAGTCTACCAAATTCGTCATATATA	57.581	33.333	0.00	0.00	0.00	0.86
1146	1287	7.497595	AGCAAGTCTACCAAATTCGTCATATA	58.502	34.615	0.00	0.00	0.00	0.86
1187	1331	4.751767	TTTTGGAAGCCATGTGAAACTT	57.248	36.364	0.00	0.00	38.04	2.66
1252	1397	7.724305	TTTTATGTATACTTCTCGCATTCCC	57.276	36.000	4.17	0.00	0.00	3.97
1258	1403	9.690434	CTGAAAGTTTTTATGTATACTTCTCGC	57.310	33.333	4.17	0.00	30.92	5.03
1281	1426	2.490148	CGACGCATAGGAGGCCTGA	61.490	63.158	12.00	0.00	34.61	3.86
1284	1429	0.317479	AATACGACGCATAGGAGGCC	59.683	55.000	0.00	0.00	0.00	5.19
1378	1526	4.998671	TTGAGTTTTGCATCCTTTGTGA	57.001	36.364	0.00	0.00	0.00	3.58
1404	1552	7.190871	TCTGATTGTTCTTTAAAAACCGTGAC	58.809	34.615	9.35	0.00	0.00	3.67
1409	1557	8.593492	AGCAATCTGATTGTTCTTTAAAAACC	57.407	30.769	26.22	9.19	42.20	3.27
1417	1565	3.937706	CTCCGAGCAATCTGATTGTTCTT	59.062	43.478	30.99	16.99	44.95	2.52
1441	1591	7.619964	AAACCGAACTCGTTTTGGATATAAT	57.380	32.000	11.43	0.00	41.06	1.28
1468	1618	1.347707	AGATCCAAAACGCCACTCTCA	59.652	47.619	0.00	0.00	0.00	3.27
1469	1619	2.003301	GAGATCCAAAACGCCACTCTC	58.997	52.381	0.00	0.00	0.00	3.20
1470	1620	1.673033	CGAGATCCAAAACGCCACTCT	60.673	52.381	0.00	0.00	0.00	3.24
1472	1622	0.673644	CCGAGATCCAAAACGCCACT	60.674	55.000	0.00	0.00	0.00	4.00
1473	1623	1.794222	CCGAGATCCAAAACGCCAC	59.206	57.895	0.00	0.00	0.00	5.01
1475	1625	1.376609	ATGCCGAGATCCAAAACGCC	61.377	55.000	0.00	0.00	0.00	5.68
1476	1626	0.028110	GATGCCGAGATCCAAAACGC	59.972	55.000	0.00	0.00	0.00	4.84
1483	1633	0.036577	CTCCATGGATGCCGAGATCC	60.037	60.000	16.63	5.87	42.23	3.36
1484	1634	0.036577	CCTCCATGGATGCCGAGATC	60.037	60.000	16.63	0.00	38.35	2.75
1487	1637	2.281345	GCCTCCATGGATGCCGAG	60.281	66.667	26.66	9.80	38.35	4.63
1491	1641	0.825010	AAATCGGCCTCCATGGATGC	60.825	55.000	28.38	28.38	38.35	3.91
1492	1642	1.696063	AAAATCGGCCTCCATGGATG	58.304	50.000	16.63	14.26	38.35	3.51
1493	1643	2.459555	AAAAATCGGCCTCCATGGAT	57.540	45.000	16.63	0.00	38.35	3.41
1528	1678	9.958234	TTCATTCTGAAATTTTACACAATCGAA	57.042	25.926	0.00	0.00	32.71	3.71
1529	1679	9.958234	TTTCATTCTGAAATTTTACACAATCGA	57.042	25.926	0.00	0.00	41.02	3.59
1544	1694	7.366513	TGCATTTCAACGTATTTCATTCTGAA	58.633	30.769	0.00	0.00	34.03	3.02
1545	1695	6.907741	TGCATTTCAACGTATTTCATTCTGA	58.092	32.000	0.00	0.00	0.00	3.27
1547	1697	7.566858	GTTGCATTTCAACGTATTTCATTCT	57.433	32.000	0.00	0.00	44.71	2.40
1577	1727	8.521176	CCTCTCAGATCATGAATTTGTCTTTTT	58.479	33.333	0.00	0.00	37.52	1.94
1578	1728	7.886970	TCCTCTCAGATCATGAATTTGTCTTTT	59.113	33.333	0.00	0.00	37.52	2.27
1579	1729	7.400439	TCCTCTCAGATCATGAATTTGTCTTT	58.600	34.615	0.00	0.00	37.52	2.52
1580	1730	6.955364	TCCTCTCAGATCATGAATTTGTCTT	58.045	36.000	0.00	0.00	37.52	3.01
1581	1731	6.556974	TCCTCTCAGATCATGAATTTGTCT	57.443	37.500	0.00	0.00	37.52	3.41
1582	1732	6.990939	TCATCCTCTCAGATCATGAATTTGTC	59.009	38.462	0.00	0.00	37.52	3.18
1583	1733	6.896883	TCATCCTCTCAGATCATGAATTTGT	58.103	36.000	0.00	0.00	37.52	2.83
1584	1734	7.803279	TTCATCCTCTCAGATCATGAATTTG	57.197	36.000	0.00	0.00	37.52	2.32
1586	1736	8.882282	ACTATTCATCCTCTCAGATCATGAATT	58.118	33.333	19.44	6.74	39.92	2.17
1587	1737	8.438618	ACTATTCATCCTCTCAGATCATGAAT	57.561	34.615	18.71	18.71	43.42	2.57
1589	1739	7.240167	AGACTATTCATCCTCTCAGATCATGA	58.760	38.462	0.00	0.00	36.21	3.07
1590	1740	7.363181	GGAGACTATTCATCCTCTCAGATCATG	60.363	44.444	0.00	0.00	32.29	3.07
1592	1742	6.009589	GGAGACTATTCATCCTCTCAGATCA	58.990	44.000	0.00	0.00	32.29	2.92
1593	1743	6.151648	CAGGAGACTATTCATCCTCTCAGATC	59.848	46.154	0.00	0.00	41.60	2.75
1594	1744	6.012113	CAGGAGACTATTCATCCTCTCAGAT	58.988	44.000	0.00	0.00	41.60	2.90
1596	1746	5.009911	CACAGGAGACTATTCATCCTCTCAG	59.990	48.000	0.00	0.00	41.60	3.35
1598	1748	4.892934	ACACAGGAGACTATTCATCCTCTC	59.107	45.833	0.00	0.00	41.60	3.20
1599	1749	4.877773	ACACAGGAGACTATTCATCCTCT	58.122	43.478	0.00	0.00	41.60	3.69
1600	1750	5.606348	AACACAGGAGACTATTCATCCTC	57.394	43.478	0.00	0.00	41.60	3.71
1601	1751	7.496346	TTTAACACAGGAGACTATTCATCCT	57.504	36.000	0.00	0.00	44.41	3.24
1602	1752	8.561738	TTTTTAACACAGGAGACTATTCATCC	57.438	34.615	0.00	0.00	40.21	3.51
1603	1753	8.178313	GCTTTTTAACACAGGAGACTATTCATC	58.822	37.037	0.00	0.00	40.21	2.92
1604	1754	7.121315	GGCTTTTTAACACAGGAGACTATTCAT	59.879	37.037	0.00	0.00	40.21	2.57
1605	1755	6.430000	GGCTTTTTAACACAGGAGACTATTCA	59.570	38.462	0.00	0.00	40.21	2.57
1606	1756	6.655425	AGGCTTTTTAACACAGGAGACTATTC	59.345	38.462	0.00	0.00	40.21	1.75
1607	1757	6.543735	AGGCTTTTTAACACAGGAGACTATT	58.456	36.000	0.00	0.00	40.21	1.73
1608	1758	6.128138	AGGCTTTTTAACACAGGAGACTAT	57.872	37.500	0.00	0.00	40.21	2.12
1609	1759	5.548406	GAGGCTTTTTAACACAGGAGACTA	58.452	41.667	0.00	0.00	40.21	2.59
1610	1760	4.390264	GAGGCTTTTTAACACAGGAGACT	58.610	43.478	0.00	0.00	46.44	3.24
1611	1761	3.186613	CGAGGCTTTTTAACACAGGAGAC	59.813	47.826	0.00	0.00	0.00	3.36
1612	1762	3.399330	CGAGGCTTTTTAACACAGGAGA	58.601	45.455	0.00	0.00	0.00	3.71
1613	1763	2.484264	CCGAGGCTTTTTAACACAGGAG	59.516	50.000	0.00	0.00	0.00	3.69
1614	1764	2.105134	TCCGAGGCTTTTTAACACAGGA	59.895	45.455	0.00	0.00	0.00	3.86
1615	1765	2.500229	TCCGAGGCTTTTTAACACAGG	58.500	47.619	0.00	0.00	0.00	4.00
1616	1766	4.766404	AATCCGAGGCTTTTTAACACAG	57.234	40.909	0.00	0.00	0.00	3.66
1617	1767	6.657541	AGATAAATCCGAGGCTTTTTAACACA	59.342	34.615	0.00	0.00	0.00	3.72
1618	1768	7.085052	AGATAAATCCGAGGCTTTTTAACAC	57.915	36.000	0.00	0.00	0.00	3.32
1619	1769	7.696992	AAGATAAATCCGAGGCTTTTTAACA	57.303	32.000	0.00	0.00	0.00	2.41
1620	1770	8.981724	AAAAGATAAATCCGAGGCTTTTTAAC	57.018	30.769	0.00	0.00	33.29	2.01
1643	1793	0.820871	AAACGAGGGCTGTGCAAAAA	59.179	45.000	0.00	0.00	0.00	1.94
1644	1794	0.383949	GAAACGAGGGCTGTGCAAAA	59.616	50.000	0.00	0.00	0.00	2.44
1645	1795	0.749818	TGAAACGAGGGCTGTGCAAA	60.750	50.000	0.00	0.00	0.00	3.68
1646	1796	1.153066	TGAAACGAGGGCTGTGCAA	60.153	52.632	0.00	0.00	0.00	4.08
1647	1797	1.597854	CTGAAACGAGGGCTGTGCA	60.598	57.895	0.00	0.00	0.00	4.57
1648	1798	2.970974	GCTGAAACGAGGGCTGTGC	61.971	63.158	0.00	0.00	0.00	4.57
1649	1799	2.671177	CGCTGAAACGAGGGCTGTG	61.671	63.158	0.00	0.00	34.06	3.66
1650	1800	1.812686	TACGCTGAAACGAGGGCTGT	61.813	55.000	0.00	0.00	36.70	4.40
1651	1801	0.460284	ATACGCTGAAACGAGGGCTG	60.460	55.000	0.00	0.00	36.70	4.85
1652	1802	0.249398	AATACGCTGAAACGAGGGCT	59.751	50.000	0.00	0.00	36.70	5.19
1653	1803	1.084289	AAATACGCTGAAACGAGGGC	58.916	50.000	0.00	0.00	36.70	5.19
1654	1804	2.482721	ACAAAATACGCTGAAACGAGGG	59.517	45.455	0.00	0.00	36.70	4.30
1655	1805	3.424433	GGACAAAATACGCTGAAACGAGG	60.424	47.826	0.00	0.00	36.70	4.63
1656	1806	3.424433	GGGACAAAATACGCTGAAACGAG	60.424	47.826	0.00	0.00	36.70	4.18
1657	1807	2.481185	GGGACAAAATACGCTGAAACGA	59.519	45.455	0.00	0.00	36.70	3.85
1658	1808	2.723618	CGGGACAAAATACGCTGAAACG	60.724	50.000	0.00	0.00	39.50	3.60
1659	1809	2.481185	TCGGGACAAAATACGCTGAAAC	59.519	45.455	0.00	0.00	0.00	2.78
1660	1810	2.768698	TCGGGACAAAATACGCTGAAA	58.231	42.857	0.00	0.00	0.00	2.69
1661	1811	2.459060	TCGGGACAAAATACGCTGAA	57.541	45.000	0.00	0.00	0.00	3.02
1662	1812	2.459060	TTCGGGACAAAATACGCTGA	57.541	45.000	0.00	0.00	0.00	4.26
1663	1813	3.546002	TTTTCGGGACAAAATACGCTG	57.454	42.857	0.00	0.00	0.00	5.18
1664	1814	4.776795	AATTTTCGGGACAAAATACGCT	57.223	36.364	0.00	0.00	35.35	5.07
1665	1815	5.857517	TGTAAATTTTCGGGACAAAATACGC	59.142	36.000	0.00	0.00	35.35	4.42
1666	1816	6.856938	TGTGTAAATTTTCGGGACAAAATACG	59.143	34.615	0.00	0.00	35.35	3.06
1667	1817	7.115236	GGTGTGTAAATTTTCGGGACAAAATAC	59.885	37.037	0.00	0.00	35.35	1.89
1668	1818	7.014422	AGGTGTGTAAATTTTCGGGACAAAATA	59.986	33.333	0.00	0.00	35.35	1.40
1669	1819	5.986741	GGTGTGTAAATTTTCGGGACAAAAT	59.013	36.000	0.00	0.00	37.53	1.82
1670	1820	5.127356	AGGTGTGTAAATTTTCGGGACAAAA	59.873	36.000	0.00	0.00	0.00	2.44
1671	1821	4.645588	AGGTGTGTAAATTTTCGGGACAAA	59.354	37.500	0.00	0.00	0.00	2.83
1672	1822	4.036971	CAGGTGTGTAAATTTTCGGGACAA	59.963	41.667	0.00	0.00	0.00	3.18
1673	1823	3.566322	CAGGTGTGTAAATTTTCGGGACA	59.434	43.478	0.00	0.00	0.00	4.02
1674	1824	3.816523	TCAGGTGTGTAAATTTTCGGGAC	59.183	43.478	0.00	0.00	0.00	4.46
1675	1825	4.069304	CTCAGGTGTGTAAATTTTCGGGA	58.931	43.478	0.00	0.00	0.00	5.14
1676	1826	3.818773	ACTCAGGTGTGTAAATTTTCGGG	59.181	43.478	0.00	0.00	0.00	5.14
1677	1827	6.737254	ATACTCAGGTGTGTAAATTTTCGG	57.263	37.500	0.00	0.00	0.00	4.30
1678	1828	9.702726	CATAATACTCAGGTGTGTAAATTTTCG	57.297	33.333	0.00	0.00	0.00	3.46
1679	1829	9.503427	GCATAATACTCAGGTGTGTAAATTTTC	57.497	33.333	0.00	0.00	0.00	2.29
1680	1830	8.466798	GGCATAATACTCAGGTGTGTAAATTTT	58.533	33.333	0.00	0.00	0.00	1.82
1681	1831	7.834181	AGGCATAATACTCAGGTGTGTAAATTT	59.166	33.333	0.00	0.00	0.00	1.82
1682	1832	7.346471	AGGCATAATACTCAGGTGTGTAAATT	58.654	34.615	0.00	0.00	0.00	1.82
1683	1833	6.900194	AGGCATAATACTCAGGTGTGTAAAT	58.100	36.000	0.00	0.00	0.00	1.40
1684	1834	6.308015	AGGCATAATACTCAGGTGTGTAAA	57.692	37.500	0.00	0.00	0.00	2.01
1685	1835	5.950544	AGGCATAATACTCAGGTGTGTAA	57.049	39.130	0.00	0.00	0.00	2.41
1686	1836	5.423931	TGAAGGCATAATACTCAGGTGTGTA	59.576	40.000	0.00	0.00	0.00	2.90
1687	1837	4.225042	TGAAGGCATAATACTCAGGTGTGT	59.775	41.667	0.00	0.00	0.00	3.72
1688	1838	4.769688	TGAAGGCATAATACTCAGGTGTG	58.230	43.478	0.00	0.00	0.00	3.82
1689	1839	5.636903	ATGAAGGCATAATACTCAGGTGT	57.363	39.130	0.00	0.00	31.57	4.16
1690	1840	9.539825	GATATATGAAGGCATAATACTCAGGTG	57.460	37.037	0.00	0.00	40.20	4.00
1691	1841	9.499369	AGATATATGAAGGCATAATACTCAGGT	57.501	33.333	0.00	0.00	40.20	4.00
1692	1842	9.979578	GAGATATATGAAGGCATAATACTCAGG	57.020	37.037	0.00	0.00	40.20	3.86
1766	1916	9.685828	CCTTCAAATGCAAAATTCAAAATTCAT	57.314	25.926	0.00	0.00	0.00	2.57
1767	1917	7.648510	GCCTTCAAATGCAAAATTCAAAATTCA	59.351	29.630	0.00	0.00	0.00	2.57
1768	1918	7.115236	GGCCTTCAAATGCAAAATTCAAAATTC	59.885	33.333	0.00	0.00	0.00	2.17
1769	1919	6.924612	GGCCTTCAAATGCAAAATTCAAAATT	59.075	30.769	0.00	0.00	0.00	1.82
1770	1920	6.265876	AGGCCTTCAAATGCAAAATTCAAAAT	59.734	30.769	0.00	0.00	0.00	1.82
1771	1921	5.593502	AGGCCTTCAAATGCAAAATTCAAAA	59.406	32.000	0.00	0.00	0.00	2.44
1772	1922	5.131784	AGGCCTTCAAATGCAAAATTCAAA	58.868	33.333	0.00	0.00	0.00	2.69
1773	1923	4.716794	AGGCCTTCAAATGCAAAATTCAA	58.283	34.783	0.00	0.00	0.00	2.69
1774	1924	4.317488	GAGGCCTTCAAATGCAAAATTCA	58.683	39.130	6.77	0.00	0.00	2.57
1775	1925	3.368843	CGAGGCCTTCAAATGCAAAATTC	59.631	43.478	6.77	0.00	0.00	2.17
1776	1926	3.006752	TCGAGGCCTTCAAATGCAAAATT	59.993	39.130	6.77	0.00	0.00	1.82
1777	1927	2.562298	TCGAGGCCTTCAAATGCAAAAT	59.438	40.909	6.77	0.00	0.00	1.82
1778	1928	1.959985	TCGAGGCCTTCAAATGCAAAA	59.040	42.857	6.77	0.00	0.00	2.44
1779	1929	1.614996	TCGAGGCCTTCAAATGCAAA	58.385	45.000	6.77	0.00	0.00	3.68
1780	1930	1.541147	CTTCGAGGCCTTCAAATGCAA	59.459	47.619	6.77	0.00	0.00	4.08
1781	1931	1.167851	CTTCGAGGCCTTCAAATGCA	58.832	50.000	6.77	0.00	0.00	3.96
1782	1932	1.131315	GTCTTCGAGGCCTTCAAATGC	59.869	52.381	6.77	0.00	0.00	3.56
1783	1933	1.740025	GGTCTTCGAGGCCTTCAAATG	59.260	52.381	6.77	0.00	36.93	2.32
1784	1934	1.351017	TGGTCTTCGAGGCCTTCAAAT	59.649	47.619	6.77	0.00	41.63	2.32
1785	1935	0.762418	TGGTCTTCGAGGCCTTCAAA	59.238	50.000	6.77	0.41	41.63	2.69
1786	1936	0.034896	GTGGTCTTCGAGGCCTTCAA	59.965	55.000	6.77	1.26	41.63	2.69
1787	1937	1.671742	GTGGTCTTCGAGGCCTTCA	59.328	57.895	6.77	0.00	41.63	3.02
1788	1938	1.446272	CGTGGTCTTCGAGGCCTTC	60.446	63.158	6.77	0.00	41.63	3.46
1789	1939	2.657237	CGTGGTCTTCGAGGCCTT	59.343	61.111	6.77	0.00	41.63	4.35
1790	1940	4.070552	GCGTGGTCTTCGAGGCCT	62.071	66.667	3.86	3.86	41.63	5.19
1791	1941	4.373116	TGCGTGGTCTTCGAGGCC	62.373	66.667	0.00	0.00	41.40	5.19
1792	1942	3.112709	GTGCGTGGTCTTCGAGGC	61.113	66.667	0.00	0.00	34.65	4.70
1793	1943	2.805353	CGTGCGTGGTCTTCGAGG	60.805	66.667	0.00	0.00	0.00	4.63
1794	1944	2.805353	CCGTGCGTGGTCTTCGAG	60.805	66.667	0.00	0.00	0.00	4.04
1795	1945	3.598715	ACCGTGCGTGGTCTTCGA	61.599	61.111	0.00	0.00	37.91	3.71
1796	1946	3.403057	CACCGTGCGTGGTCTTCG	61.403	66.667	0.00	0.00	41.38	3.79
1813	1963	4.430765	ACGCGGTGATGGGACGAC	62.431	66.667	12.47	0.00	0.00	4.34
1826	1976	3.086161	AAAAAGAAATGCCGACGCG	57.914	47.368	3.53	3.53	38.08	6.01
1843	1996	7.235079	TGGGTCTGACATAGGTGAATTAAAAA	58.765	34.615	10.38	0.00	0.00	1.94
1847	2000	5.277250	TCTGGGTCTGACATAGGTGAATTA	58.723	41.667	10.38	0.00	0.00	1.40
1848	2001	4.104086	TCTGGGTCTGACATAGGTGAATT	58.896	43.478	10.38	0.00	0.00	2.17
1849	2002	3.724478	TCTGGGTCTGACATAGGTGAAT	58.276	45.455	10.38	0.00	0.00	2.57
1851	2004	2.919772	TCTGGGTCTGACATAGGTGA	57.080	50.000	10.38	0.00	0.00	4.02
1852	2005	4.494091	AATTCTGGGTCTGACATAGGTG	57.506	45.455	10.38	0.00	0.00	4.00
1853	2006	5.726793	AGTTAATTCTGGGTCTGACATAGGT	59.273	40.000	10.38	0.00	0.00	3.08
1854	2007	6.098982	AGAGTTAATTCTGGGTCTGACATAGG	59.901	42.308	10.38	0.00	0.00	2.57
1855	2008	7.118496	AGAGTTAATTCTGGGTCTGACATAG	57.882	40.000	10.38	7.12	0.00	2.23
1859	2012	4.158025	TCGAGAGTTAATTCTGGGTCTGAC	59.842	45.833	5.06	0.00	0.00	3.51
1861	2014	4.158764	AGTCGAGAGTTAATTCTGGGTCTG	59.841	45.833	5.06	0.00	0.00	3.51
1862	2015	4.158764	CAGTCGAGAGTTAATTCTGGGTCT	59.841	45.833	5.06	4.49	0.00	3.85
1863	2016	4.425520	CAGTCGAGAGTTAATTCTGGGTC	58.574	47.826	5.06	2.46	0.00	4.46
1864	2017	3.195825	CCAGTCGAGAGTTAATTCTGGGT	59.804	47.826	5.06	0.00	37.78	4.51
1865	2018	3.786635	CCAGTCGAGAGTTAATTCTGGG	58.213	50.000	5.06	0.00	37.78	4.45
1866	2019	3.430929	CCCCAGTCGAGAGTTAATTCTGG	60.431	52.174	5.06	4.44	40.13	3.86
1938	2102	2.246126	GGGGTTTGGGAGTGGGGAT	61.246	63.158	0.00	0.00	0.00	3.85
1969	2139	1.274703	GGAGGGGAATGAGGCTGTGA	61.275	60.000	0.00	0.00	0.00	3.58
1980	2169	0.554865	ATGTGGGATTGGGAGGGGAA	60.555	55.000	0.00	0.00	0.00	3.97
2270	2997	1.893786	CCTCAGCAGCGTAAGAGGT	59.106	57.895	14.51	0.00	42.10	3.85
2332	3059	3.650950	AATGTGACCCCAGCGCCT	61.651	61.111	2.29	0.00	0.00	5.52
2371	3159	3.473113	AGGCACCCAAATCATAAACCT	57.527	42.857	0.00	0.00	0.00	3.50
2414	3202	2.507110	AAGCCGTCACATCCACCGAG	62.507	60.000	0.00	0.00	0.00	4.63
2474	3276	2.159379	GCCATCCAAACCGAGAATTCAC	60.159	50.000	8.44	0.00	0.00	3.18
2513	3315	4.974399	AGGGGAACTGAACTGAAACTTAG	58.026	43.478	0.00	0.00	0.00	2.18
2534	3341	7.646314	CAGATGAGCAAACATAAGGGATTAAG	58.354	38.462	0.00	0.00	0.00	1.85
2535	3342	6.039717	GCAGATGAGCAAACATAAGGGATTAA	59.960	38.462	0.00	0.00	0.00	1.40
2536	3343	5.532406	GCAGATGAGCAAACATAAGGGATTA	59.468	40.000	0.00	0.00	0.00	1.75
2537	3344	4.340381	GCAGATGAGCAAACATAAGGGATT	59.660	41.667	0.00	0.00	0.00	3.01
2538	3345	3.887716	GCAGATGAGCAAACATAAGGGAT	59.112	43.478	0.00	0.00	0.00	3.85
2539	3346	3.054139	AGCAGATGAGCAAACATAAGGGA	60.054	43.478	0.00	0.00	36.85	4.20
2540	3347	3.066342	CAGCAGATGAGCAAACATAAGGG	59.934	47.826	0.00	0.00	36.85	3.95
2541	3348	3.488721	GCAGCAGATGAGCAAACATAAGG	60.489	47.826	0.00	0.00	36.85	2.69
2656	3680	3.947834	CCAAGTAGAATGGCAACCCTAAG	59.052	47.826	0.00	0.00	0.00	2.18
2687	3711	4.081752	CACTTCTCTGGTCATCTACTTGCT	60.082	45.833	0.00	0.00	0.00	3.91
2730	3758	7.264373	AGAATATGGATCAAAAGTAAAGCCG	57.736	36.000	0.00	0.00	0.00	5.52
2738	3766	9.558396	AAAGAGCTCTAGAATATGGATCAAAAG	57.442	33.333	18.59	0.00	0.00	2.27
2860	3897	2.247311	AAATCGACGCAACTCAATGC	57.753	45.000	0.00	0.00	42.94	3.56
2899	7122	6.842163	ACAGCAACGATTAAACTAATTCAGG	58.158	36.000	0.00	0.00	0.00	3.86
2964	7191	1.533625	CATGACGTCAACCACCCAAT	58.466	50.000	24.13	0.00	0.00	3.16
2971	7198	2.338500	GAGTCTTCCATGACGTCAACC	58.662	52.381	24.13	5.56	41.47	3.77
3075	7310	5.488919	AGGATTAACAGATTCCAGAGGACAA	59.511	40.000	0.00	0.00	30.98	3.18
3095	7334	7.949690	TGTCATTCTGATGATGAAAAAGGAT	57.050	32.000	0.00	0.00	43.76	3.24
3829	8473	7.319646	ACGTGAGTATAAAACGTATTGGGTTA	58.680	34.615	6.89	0.00	46.88	2.85
3855	8499	7.937649	AGGTAATGAAACTTGTTTGGTCTAAC	58.062	34.615	3.27	0.00	0.00	2.34
4264	9040	5.978814	AGTAGGAATGTTTCTTGATACGCT	58.021	37.500	0.00	0.00	0.00	5.07
4265	9041	6.312918	TGAAGTAGGAATGTTTCTTGATACGC	59.687	38.462	0.00	0.00	0.00	4.42
4266	9042	7.545965	ACTGAAGTAGGAATGTTTCTTGATACG	59.454	37.037	0.00	0.00	0.00	3.06
4661	9529	9.225682	TGGAAATAAAGGAGATAACTGTAGGAT	57.774	33.333	0.00	0.00	0.00	3.24
4801	9679	5.924475	ATACCTACAGCAAATTCATACGC	57.076	39.130	0.00	0.00	0.00	4.42
4849	9727	2.404215	GTGCGAGACAAACAAGAGCTA	58.596	47.619	0.00	0.00	0.00	3.32
4855	9733	0.179094	AGACCGTGCGAGACAAACAA	60.179	50.000	0.00	0.00	0.00	2.83
4903	9781	3.933722	CAGGATGATCGGCCGCCT	61.934	66.667	23.51	18.46	39.69	5.52
4912	9790	1.003928	TGAGCACAACTGCAGGATGAT	59.996	47.619	23.60	14.97	46.97	2.45
5194	10369	4.451629	ACGCTCTTATATTATGGGACGG	57.548	45.455	0.00	0.00	0.00	4.79
5195	10370	6.399669	CGAAAACGCTCTTATATTATGGGACG	60.400	42.308	0.00	0.00	0.00	4.79
5196	10371	6.643770	TCGAAAACGCTCTTATATTATGGGAC	59.356	38.462	0.00	0.00	0.00	4.46
5197	10372	6.643770	GTCGAAAACGCTCTTATATTATGGGA	59.356	38.462	0.00	0.00	0.00	4.37
5198	10373	6.422701	TGTCGAAAACGCTCTTATATTATGGG	59.577	38.462	0.00	0.00	0.00	4.00
5199	10374	7.169308	AGTGTCGAAAACGCTCTTATATTATGG	59.831	37.037	0.00	0.00	45.69	2.74
5200	10375	8.062231	AGTGTCGAAAACGCTCTTATATTATG	57.938	34.615	0.00	0.00	45.69	1.90
5201	10376	9.178427	GTAGTGTCGAAAACGCTCTTATATTAT	57.822	33.333	0.00	0.00	45.69	1.28
5202	10377	8.183536	TGTAGTGTCGAAAACGCTCTTATATTA	58.816	33.333	0.00	0.00	45.69	0.98
5203	10378	7.008992	GTGTAGTGTCGAAAACGCTCTTATATT	59.991	37.037	0.00	0.00	45.69	1.28
5204	10379	6.471519	GTGTAGTGTCGAAAACGCTCTTATAT	59.528	38.462	0.00	0.00	45.69	0.86
5205	10380	5.796935	GTGTAGTGTCGAAAACGCTCTTATA	59.203	40.000	0.00	0.00	45.69	0.98
5206	10381	4.620184	GTGTAGTGTCGAAAACGCTCTTAT	59.380	41.667	0.00	0.00	45.69	1.73
5207	10382	3.976942	GTGTAGTGTCGAAAACGCTCTTA	59.023	43.478	0.00	0.00	45.69	2.10
5208	10383	2.793232	GTGTAGTGTCGAAAACGCTCTT	59.207	45.455	0.00	0.00	45.69	2.85
5209	10384	2.034305	AGTGTAGTGTCGAAAACGCTCT	59.966	45.455	0.00	0.00	45.69	4.09
5210	10385	2.391879	AGTGTAGTGTCGAAAACGCTC	58.608	47.619	0.00	0.00	45.69	5.03
5212	10387	3.303406	ACTAGTGTAGTGTCGAAAACGC	58.697	45.455	0.00	0.00	37.69	4.84
5235	10410	9.976511	CGTCCCATAATATAAGAGTGTTTTCTA	57.023	33.333	0.00	0.00	0.00	2.10
5236	10411	7.931948	CCGTCCCATAATATAAGAGTGTTTTCT	59.068	37.037	0.00	0.00	0.00	2.52
5237	10412	7.929785	TCCGTCCCATAATATAAGAGTGTTTTC	59.070	37.037	0.00	0.00	0.00	2.29
5238	10413	7.798071	TCCGTCCCATAATATAAGAGTGTTTT	58.202	34.615	0.00	0.00	0.00	2.43
5239	10414	7.369551	TCCGTCCCATAATATAAGAGTGTTT	57.630	36.000	0.00	0.00	0.00	2.83
5240	10415	6.014499	CCTCCGTCCCATAATATAAGAGTGTT	60.014	42.308	0.00	0.00	0.00	3.32
5241	10416	5.480772	CCTCCGTCCCATAATATAAGAGTGT	59.519	44.000	0.00	0.00	0.00	3.55
5242	10417	5.105310	CCCTCCGTCCCATAATATAAGAGTG	60.105	48.000	0.00	0.00	0.00	3.51
5243	10418	5.024118	CCCTCCGTCCCATAATATAAGAGT	58.976	45.833	0.00	0.00	0.00	3.24
5244	10419	5.269991	TCCCTCCGTCCCATAATATAAGAG	58.730	45.833	0.00	0.00	0.00	2.85
5245	10420	5.222484	ACTCCCTCCGTCCCATAATATAAGA	60.222	44.000	0.00	0.00	0.00	2.10
5246	10421	5.024118	ACTCCCTCCGTCCCATAATATAAG	58.976	45.833	0.00	0.00	0.00	1.73
5247	10422	5.019657	ACTCCCTCCGTCCCATAATATAA	57.980	43.478	0.00	0.00	0.00	0.98
5248	10423	4.687262	ACTCCCTCCGTCCCATAATATA	57.313	45.455	0.00	0.00	0.00	0.86
5249	10424	3.562108	ACTCCCTCCGTCCCATAATAT	57.438	47.619	0.00	0.00	0.00	1.28
5250	10425	3.400322	AGTACTCCCTCCGTCCCATAATA	59.600	47.826	0.00	0.00	0.00	0.98
5251	10426	2.179424	AGTACTCCCTCCGTCCCATAAT	59.821	50.000	0.00	0.00	0.00	1.28
5252	10427	1.572415	AGTACTCCCTCCGTCCCATAA	59.428	52.381	0.00	0.00	0.00	1.90
5253	10428	1.144503	GAGTACTCCCTCCGTCCCATA	59.855	57.143	12.13	0.00	0.00	2.74
5254	10429	0.106116	GAGTACTCCCTCCGTCCCAT	60.106	60.000	12.13	0.00	0.00	4.00
5255	10430	1.305623	GAGTACTCCCTCCGTCCCA	59.694	63.158	12.13	0.00	0.00	4.37
5256	10431	1.455402	GGAGTACTCCCTCCGTCCC	60.455	68.421	28.87	3.11	43.94	4.46
5257	10432	4.256462	GGAGTACTCCCTCCGTCC	57.744	66.667	28.87	4.17	43.94	4.79
5266	10441	5.104259	ACAAAGATCAATGGGGAGTACTC	57.896	43.478	14.87	14.87	0.00	2.59
5267	10442	5.726793	ACTACAAAGATCAATGGGGAGTACT	59.273	40.000	0.00	0.00	0.00	2.73
5307	10486	0.865769	GTAGCACAACCGTTGTCTGG	59.134	55.000	14.11	5.01	43.23	3.86
5363	10542	4.998033	TGTACCATTGCACTAAACGATTGA	59.002	37.500	0.00	0.00	0.00	2.57
5440	10622	5.050295	CAGAACCCTGACGTTAGAAAAGAAC	60.050	44.000	9.23	0.00	43.02	3.01
5704	14214	4.759953	TCCTCAGTTACTTTACCCTCCTT	58.240	43.478	0.00	0.00	0.00	3.36
6078	14642	1.772453	ACTTTTCTTCTGGAACGGGGA	59.228	47.619	0.00	0.00	33.13	4.81
6159	14725	6.759272	ACAAAGAAGAGCTCACATAAGTACA	58.241	36.000	17.77	0.00	0.00	2.90
6160	14726	7.659652	AACAAAGAAGAGCTCACATAAGTAC	57.340	36.000	17.77	0.00	0.00	2.73
6161	14727	9.772973	TTAAACAAAGAAGAGCTCACATAAGTA	57.227	29.630	17.77	0.00	0.00	2.24
6162	14728	8.560374	GTTAAACAAAGAAGAGCTCACATAAGT	58.440	33.333	17.77	4.77	0.00	2.24
6163	14729	8.559536	TGTTAAACAAAGAAGAGCTCACATAAG	58.440	33.333	17.77	4.10	0.00	1.73
6164	14730	8.342634	GTGTTAAACAAAGAAGAGCTCACATAA	58.657	33.333	17.77	0.00	0.00	1.90
6165	14731	7.715249	AGTGTTAAACAAAGAAGAGCTCACATA	59.285	33.333	17.77	0.00	0.00	2.29
6166	14732	6.543831	AGTGTTAAACAAAGAAGAGCTCACAT	59.456	34.615	17.77	0.80	0.00	3.21
6172	14738	5.175090	AGCAGTGTTAAACAAAGAAGAGC	57.825	39.130	0.00	0.00	0.00	4.09
6287	14887	4.136796	AGCCGTGTTGATGCATATAATGT	58.863	39.130	0.00	0.00	0.00	2.71
6331	14969	9.754382	CCAAACATATCAGAAAATTAATCCAGG	57.246	33.333	0.00	0.00	0.00	4.45
6343	15021	2.677836	GCAGCGACCAAACATATCAGAA	59.322	45.455	0.00	0.00	0.00	3.02
6480	15161	4.922206	ACAGAAGGATCAGCACCATTTTA	58.078	39.130	0.00	0.00	0.00	1.52
6863	16342	9.762933	GGGCTATGCTTTTCAATTAATGATAAA	57.237	29.630	0.00	0.00	38.03	1.40
6952	16431	3.726557	TCTTTGGGAAGAGATGCACAT	57.273	42.857	0.00	0.00	36.99	3.21
7030	16509	2.747446	ACAACAAATGGAGGTATCACGC	59.253	45.455	0.00	0.00	0.00	5.34
7116	16596	4.631377	TGTTTTAACGCTCTCTGATCCATG	59.369	41.667	0.00	0.00	0.00	3.66
7169	16649	3.891366	CCATTCAGGGGTTAACATGATCC	59.109	47.826	8.10	0.00	0.00	3.36
7230	16715	1.550524	TGACATCCTGAACGGAAGGAG	59.449	52.381	8.67	4.51	46.85	3.69
7268	16754	5.693961	TGAAATAGAAGGCATATGGAGCAA	58.306	37.500	4.56	0.00	0.00	3.91
7427	16917	1.004440	AGGCAAAGTCGAGAGGTGC	60.004	57.895	0.00	0.00	34.42	5.01
7666	17156	0.891373	CAAGCGAGAGAAGAGTGGGA	59.109	55.000	0.00	0.00	0.00	4.37
7713	17203	9.082313	ACATTGTATGACTTGAAAGGAAAAGAT	57.918	29.630	0.00	0.00	0.00	2.40
7757	17325	1.997606	GTACATACGCTGGTCACAACC	59.002	52.381	0.00	0.00	46.66	3.77
7769	17337	6.883129	TGTTGAATTGTTCTGTGTACATACG	58.117	36.000	0.00	0.00	0.00	3.06
7944	17555	2.369532	ACCAAAAGACCGGCTAAGTACA	59.630	45.455	0.00	0.00	0.00	2.90
8077	17690	4.652822	AGGTGTTCTTTTAGATGGTGGTC	58.347	43.478	0.00	0.00	0.00	4.02
8318	18463	3.968649	TGCAAGAGAAAAGTGCATGTTC	58.031	40.909	0.00	0.00	43.09	3.18
8323	18468	1.677576	CAGGTGCAAGAGAAAAGTGCA	59.322	47.619	0.00	0.00	45.62	4.57
8324	18469	1.000938	CCAGGTGCAAGAGAAAAGTGC	60.001	52.381	0.00	0.00	38.78	4.40
8325	18470	1.610522	CCCAGGTGCAAGAGAAAAGTG	59.389	52.381	0.00	0.00	0.00	3.16
8326	18471	1.986882	CCCAGGTGCAAGAGAAAAGT	58.013	50.000	0.00	0.00	0.00	2.66
8327	18472	0.600057	GCCCAGGTGCAAGAGAAAAG	59.400	55.000	0.00	0.00	0.00	2.27
8328	18473	0.827507	GGCCCAGGTGCAAGAGAAAA	60.828	55.000	0.00	0.00	0.00	2.29
8329	18474	1.228552	GGCCCAGGTGCAAGAGAAA	60.229	57.895	0.00	0.00	0.00	2.52
8330	18475	2.005606	TTGGCCCAGGTGCAAGAGAA	62.006	55.000	0.00	0.00	0.00	2.87
8331	18476	2.416107	CTTGGCCCAGGTGCAAGAGA	62.416	60.000	0.00	0.00	0.00	3.10
8332	18477	1.975407	CTTGGCCCAGGTGCAAGAG	60.975	63.158	0.00	0.00	0.00	2.85
8333	18478	2.115910	CTTGGCCCAGGTGCAAGA	59.884	61.111	0.00	0.00	0.00	3.02
8334	18479	3.688159	GCTTGGCCCAGGTGCAAG	61.688	66.667	5.89	0.00	0.00	4.01
8335	18480	4.223125	AGCTTGGCCCAGGTGCAA	62.223	61.111	7.91	0.00	0.00	4.08
8336	18481	4.980702	CAGCTTGGCCCAGGTGCA	62.981	66.667	21.62	0.00	35.58	4.57
8337	18482	4.982701	ACAGCTTGGCCCAGGTGC	62.983	66.667	30.21	13.86	44.68	5.01
8338	18483	2.203538	AACAGCTTGGCCCAGGTG	60.204	61.111	29.05	29.05	45.99	4.00
8339	18484	2.116125	GAACAGCTTGGCCCAGGT	59.884	61.111	1.98	1.98	0.00	4.00
8340	18485	1.975407	CAGAACAGCTTGGCCCAGG	60.975	63.158	5.89	0.00	0.00	4.45
8341	18486	1.975407	CCAGAACAGCTTGGCCCAG	60.975	63.158	0.00	0.00	0.00	4.45
8342	18487	2.115910	CCAGAACAGCTTGGCCCA	59.884	61.111	0.00	0.00	0.00	5.36
8343	18488	1.973812	GACCAGAACAGCTTGGCCC	60.974	63.158	0.00	0.00	0.00	5.80
8344	18489	1.073897	AGACCAGAACAGCTTGGCC	59.926	57.895	0.00	0.00	0.00	5.36
8345	18490	0.250467	TCAGACCAGAACAGCTTGGC	60.250	55.000	1.89	0.00	0.00	4.52
8346	18491	1.876156	GTTCAGACCAGAACAGCTTGG	59.124	52.381	0.37	0.37	45.53	3.61
8420	18635	5.088680	ACCTTTTGCCATCAACCAATATG	57.911	39.130	0.00	0.00	30.75	1.78
8426	18641	3.069443	TCTGAAACCTTTTGCCATCAACC	59.931	43.478	0.00	0.00	30.75	3.77
8440	18656	2.342910	CAGCATGCAGTTCTGAAACC	57.657	50.000	21.98	0.00	35.92	3.27
8629	18923	6.992063	ACATTCACCTTGATGTAAGTGATC	57.008	37.500	0.00	0.00	34.45	2.92
8630	18924	6.942005	TCAACATTCACCTTGATGTAAGTGAT	59.058	34.615	0.00	0.00	34.45	3.06
8631	18925	6.295249	TCAACATTCACCTTGATGTAAGTGA	58.705	36.000	0.00	0.00	34.45	3.41
8632	18926	6.558771	TCAACATTCACCTTGATGTAAGTG	57.441	37.500	0.00	0.00	34.45	3.16
8633	18927	6.294176	GCTTCAACATTCACCTTGATGTAAGT	60.294	38.462	0.00	0.00	34.45	2.24
8634	18928	6.088824	GCTTCAACATTCACCTTGATGTAAG	58.911	40.000	0.00	0.00	36.11	2.34
8635	18929	5.334802	CGCTTCAACATTCACCTTGATGTAA	60.335	40.000	0.00	0.00	0.00	2.41
8636	18930	4.154015	CGCTTCAACATTCACCTTGATGTA	59.846	41.667	0.00	0.00	0.00	2.29
8637	18931	3.058016	CGCTTCAACATTCACCTTGATGT	60.058	43.478	0.00	0.00	0.00	3.06
8725	19019	0.752743	TTGCTTGTGCCAGCTGAACT	60.753	50.000	17.39	0.00	40.79	3.01
8766	19087	0.453390	GGCTTCCATAGTGCTTGCAC	59.547	55.000	16.98	16.98	0.00	4.57
8812	19143	3.007290	TCACCTTGAGATGTCCAAGAGTG	59.993	47.826	0.00	0.52	42.57	3.51
8947	19280	5.649782	ATGTAGCAAGATTGAAAACAGGG	57.350	39.130	0.00	0.00	0.00	4.45
8950	19283	6.040278	TGGACAATGTAGCAAGATTGAAAACA	59.960	34.615	8.17	0.00	38.36	2.83
8966	19300	2.569853	TCTCGGTTGGTATGGACAATGT	59.430	45.455	0.00	0.00	0.00	2.71
8978	19312	2.669391	GCTTCATTTGCTTCTCGGTTGG	60.669	50.000	0.00	0.00	0.00	3.77
9009	19343	2.730382	TCTACGATCCTAACAGGCACA	58.270	47.619	0.00	0.00	34.61	4.57
9010	19344	3.380637	TCTTCTACGATCCTAACAGGCAC	59.619	47.826	0.00	0.00	34.61	5.01
9011	19345	3.628008	TCTTCTACGATCCTAACAGGCA	58.372	45.455	0.00	0.00	34.61	4.75
9012	19346	4.038162	ACATCTTCTACGATCCTAACAGGC	59.962	45.833	0.00	0.00	34.61	4.85
9013	19347	5.776173	ACATCTTCTACGATCCTAACAGG	57.224	43.478	0.00	0.00	36.46	4.00
9018	19362	7.017319	TCCAGATACATCTTCTACGATCCTA	57.983	40.000	0.00	0.00	34.22	2.94
9057	19410	3.964031	TGCATACACCCCAAAAGAAAAGT	59.036	39.130	0.00	0.00	0.00	2.66
9077	19430	1.607148	GGAGGGTTACAAAGTGTGTGC	59.393	52.381	0.00	0.00	41.89	4.57
9092	19445	5.059833	GCTATGTTGAATTACTCAGGAGGG	58.940	45.833	0.83	0.00	34.81	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.