Multiple sequence alignment - TraesCS3B01G533500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G533500 chr3B 100.000 5199 0 0 1 5199 773761952 773756754 0.000000e+00 9601.0
1 TraesCS3B01G533500 chr3B 88.034 1872 176 21 2399 4243 773900088 773901938 0.000000e+00 2172.0
2 TraesCS3B01G533500 chr3B 88.455 1793 147 18 327 2089 773898093 773899855 0.000000e+00 2109.0
3 TraesCS3B01G533500 chr3B 98.497 599 9 0 4601 5199 820899645 820900243 0.000000e+00 1057.0
4 TraesCS3B01G533500 chr3B 98.331 599 10 0 4601 5199 756376894 756377492 0.000000e+00 1051.0
5 TraesCS3B01G533500 chr3B 88.042 669 62 11 3542 4203 773743745 773743088 0.000000e+00 776.0
6 TraesCS3B01G533500 chr3B 95.045 222 11 0 1 222 773897874 773898095 2.980000e-92 350.0
7 TraesCS3B01G533500 chr3B 97.647 170 4 0 4011 4180 773877938 773878107 5.090000e-75 292.0
8 TraesCS3B01G533500 chr3D 94.959 3432 145 7 792 4204 579423948 579420526 0.000000e+00 5354.0
9 TraesCS3B01G533500 chr3D 89.278 2882 203 35 607 3465 579396412 579393614 0.000000e+00 3513.0
10 TraesCS3B01G533500 chr3D 89.744 2262 173 18 1 2233 579584447 579586678 0.000000e+00 2837.0
11 TraesCS3B01G533500 chr3D 88.933 1771 173 10 2485 4249 579587107 579588860 0.000000e+00 2163.0
12 TraesCS3B01G533500 chr3D 88.889 792 77 7 3461 4249 579383798 579383015 0.000000e+00 965.0
13 TraesCS3B01G533500 chr3D 91.061 179 16 0 4027 4205 579367490 579367312 5.200000e-60 243.0
14 TraesCS3B01G533500 chr3D 83.590 195 25 1 216 403 354613837 354613643 5.350000e-40 176.0
15 TraesCS3B01G533500 chr3A 87.441 3822 357 40 478 4249 714592043 714588295 0.000000e+00 4285.0
16 TraesCS3B01G533500 chr3A 88.375 1772 174 19 2485 4249 714645540 714647286 0.000000e+00 2102.0
17 TraesCS3B01G533500 chr3A 89.052 1562 149 8 548 2091 714643357 714644914 0.000000e+00 1917.0
18 TraesCS3B01G533500 chr3A 93.333 765 48 2 1641 2404 714627777 714628539 0.000000e+00 1127.0
19 TraesCS3B01G533500 chr3A 86.719 1024 107 17 3569 4583 714602912 714601909 0.000000e+00 1110.0
20 TraesCS3B01G533500 chr3A 91.257 183 16 0 2073 2255 714644930 714645112 3.110000e-62 250.0
21 TraesCS3B01G533500 chr3A 94.737 57 3 0 76 132 714602967 714602911 7.170000e-14 89.8
22 TraesCS3B01G533500 chr3A 94.595 37 2 0 42 78 714625872 714625908 2.020000e-04 58.4
23 TraesCS3B01G533500 chr4B 98.325 597 10 0 4603 5199 598601175 598600579 0.000000e+00 1048.0
24 TraesCS3B01G533500 chr4A 98.164 599 11 0 4601 5199 138260991 138260393 0.000000e+00 1046.0
25 TraesCS3B01G533500 chr2B 98.164 599 11 0 4601 5199 139501335 139501933 0.000000e+00 1046.0
26 TraesCS3B01G533500 chr2B 89.385 179 17 1 223 399 411541460 411541282 1.880000e-54 224.0
27 TraesCS3B01G533500 chr1B 98.164 599 11 0 4601 5199 625054939 625054341 0.000000e+00 1046.0
28 TraesCS3B01G533500 chr1B 98.157 597 11 0 4603 5199 515328676 515328080 0.000000e+00 1042.0
29 TraesCS3B01G533500 chr1B 97.833 600 13 0 4600 5199 564786388 564786987 0.000000e+00 1037.0
30 TraesCS3B01G533500 chr7B 97.997 599 12 0 4601 5199 104063955 104064553 0.000000e+00 1040.0
31 TraesCS3B01G533500 chr7B 86.207 174 19 5 213 383 750591679 750591508 3.200000e-42 183.0
32 TraesCS3B01G533500 chr7D 88.043 184 14 6 227 405 263946172 263946352 1.470000e-50 211.0
33 TraesCS3B01G533500 chr2A 88.953 172 17 1 218 387 457912620 457912791 1.470000e-50 211.0
34 TraesCS3B01G533500 chr2D 92.199 141 11 0 223 363 345853336 345853196 3.170000e-47 200.0
35 TraesCS3B01G533500 chr4D 87.821 156 18 1 224 378 122199878 122200033 1.150000e-41 182.0
36 TraesCS3B01G533500 chr5D 85.465 172 19 5 213 380 508111944 508112113 1.920000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G533500 chr3B 773756754 773761952 5198 True 9601.000000 9601 100.000000 1 5199 1 chr3B.!!$R2 5198
1 TraesCS3B01G533500 chr3B 773897874 773901938 4064 False 1543.666667 2172 90.511333 1 4243 3 chr3B.!!$F4 4242
2 TraesCS3B01G533500 chr3B 820899645 820900243 598 False 1057.000000 1057 98.497000 4601 5199 1 chr3B.!!$F3 598
3 TraesCS3B01G533500 chr3B 756376894 756377492 598 False 1051.000000 1051 98.331000 4601 5199 1 chr3B.!!$F1 598
4 TraesCS3B01G533500 chr3B 773743088 773743745 657 True 776.000000 776 88.042000 3542 4203 1 chr3B.!!$R1 661
5 TraesCS3B01G533500 chr3D 579420526 579423948 3422 True 5354.000000 5354 94.959000 792 4204 1 chr3D.!!$R5 3412
6 TraesCS3B01G533500 chr3D 579393614 579396412 2798 True 3513.000000 3513 89.278000 607 3465 1 chr3D.!!$R4 2858
7 TraesCS3B01G533500 chr3D 579584447 579588860 4413 False 2500.000000 2837 89.338500 1 4249 2 chr3D.!!$F1 4248
8 TraesCS3B01G533500 chr3D 579383015 579383798 783 True 965.000000 965 88.889000 3461 4249 1 chr3D.!!$R3 788
9 TraesCS3B01G533500 chr3A 714588295 714592043 3748 True 4285.000000 4285 87.441000 478 4249 1 chr3A.!!$R1 3771
10 TraesCS3B01G533500 chr3A 714643357 714647286 3929 False 1423.000000 2102 89.561333 548 4249 3 chr3A.!!$F2 3701
11 TraesCS3B01G533500 chr3A 714601909 714602967 1058 True 599.900000 1110 90.728000 76 4583 2 chr3A.!!$R2 4507
12 TraesCS3B01G533500 chr3A 714625872 714628539 2667 False 592.700000 1127 93.964000 42 2404 2 chr3A.!!$F1 2362
13 TraesCS3B01G533500 chr4B 598600579 598601175 596 True 1048.000000 1048 98.325000 4603 5199 1 chr4B.!!$R1 596
14 TraesCS3B01G533500 chr4A 138260393 138260991 598 True 1046.000000 1046 98.164000 4601 5199 1 chr4A.!!$R1 598
15 TraesCS3B01G533500 chr2B 139501335 139501933 598 False 1046.000000 1046 98.164000 4601 5199 1 chr2B.!!$F1 598
16 TraesCS3B01G533500 chr1B 625054341 625054939 598 True 1046.000000 1046 98.164000 4601 5199 1 chr1B.!!$R2 598
17 TraesCS3B01G533500 chr1B 515328080 515328676 596 True 1042.000000 1042 98.157000 4603 5199 1 chr1B.!!$R1 596
18 TraesCS3B01G533500 chr1B 564786388 564786987 599 False 1037.000000 1037 97.833000 4600 5199 1 chr1B.!!$F1 599
19 TraesCS3B01G533500 chr7B 104063955 104064553 598 False 1040.000000 1040 97.997000 4601 5199 1 chr7B.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 2322 0.106015 AAGGGGGTAAGCATGCATCC 60.106 55.0 21.98 17.56 0.00 3.51 F
1329 2863 0.554792 CTTGGAAGGGCCCTGATGAT 59.445 55.0 29.50 9.49 34.97 2.45 F
1822 3359 0.678048 GCAATGTGGTGGAGAGGACC 60.678 60.0 0.00 0.00 0.00 4.46 F
2425 4061 0.892358 AGTGAGCCCAAGTGCACATG 60.892 55.0 21.04 17.86 34.41 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 3359 0.040067 GCTGGCAAGGTCAAGAAACG 60.040 55.000 0.00 0.0 0.00 3.60 R
2392 4012 0.172803 CTCACTACCTGTACCGCCAC 59.827 60.000 0.00 0.0 0.00 5.01 R
3522 5440 1.159285 TTGCTTGTTGCTCATCTCCG 58.841 50.000 0.00 0.0 43.37 4.63 R
4405 6364 1.275010 TGTCATGACGTACAGCATGGT 59.725 47.619 20.54 0.0 43.62 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.431543 TGTTTCTTTCTGTGGTTACTGTTGAA 59.568 34.615 0.00 0.00 0.00 2.69
136 171 9.089601 TGCATTTGATTTACTTCATTTATGCAG 57.910 29.630 0.00 0.00 38.69 4.41
222 258 4.827284 ACTTGGGTGAAGTAATCAAGGTTG 59.173 41.667 0.00 0.00 43.54 3.77
223 259 4.715534 TGGGTGAAGTAATCAAGGTTGA 57.284 40.909 0.00 0.00 40.50 3.18
224 260 4.394729 TGGGTGAAGTAATCAAGGTTGAC 58.605 43.478 0.00 0.00 40.50 3.18
225 261 3.435671 GGGTGAAGTAATCAAGGTTGACG 59.564 47.826 0.00 0.00 40.50 4.35
226 262 4.312443 GGTGAAGTAATCAAGGTTGACGA 58.688 43.478 0.00 0.00 40.50 4.20
227 263 4.389077 GGTGAAGTAATCAAGGTTGACGAG 59.611 45.833 0.00 0.00 40.50 4.18
228 264 4.989168 GTGAAGTAATCAAGGTTGACGAGT 59.011 41.667 0.00 0.00 40.50 4.18
229 265 5.118817 GTGAAGTAATCAAGGTTGACGAGTC 59.881 44.000 0.00 0.00 40.50 3.36
230 266 3.834610 AGTAATCAAGGTTGACGAGTCG 58.165 45.455 11.85 11.85 40.49 4.18
231 267 3.504906 AGTAATCAAGGTTGACGAGTCGA 59.495 43.478 21.50 0.00 40.49 4.20
232 268 2.349297 ATCAAGGTTGACGAGTCGAC 57.651 50.000 21.50 14.39 40.49 4.20
233 269 1.315690 TCAAGGTTGACGAGTCGACT 58.684 50.000 20.18 20.18 42.32 4.18
234 270 2.497138 TCAAGGTTGACGAGTCGACTA 58.503 47.619 20.09 7.36 42.32 2.59
235 271 2.483106 TCAAGGTTGACGAGTCGACTAG 59.517 50.000 20.09 21.29 42.32 2.57
236 272 2.181954 AGGTTGACGAGTCGACTAGT 57.818 50.000 28.22 28.22 42.32 2.57
237 273 2.502295 AGGTTGACGAGTCGACTAGTT 58.498 47.619 28.42 14.82 42.32 2.24
238 274 3.668447 AGGTTGACGAGTCGACTAGTTA 58.332 45.455 28.42 22.88 42.32 2.24
239 275 4.260170 AGGTTGACGAGTCGACTAGTTAT 58.740 43.478 28.42 10.40 42.32 1.89
240 276 4.699257 AGGTTGACGAGTCGACTAGTTATT 59.301 41.667 28.42 12.89 42.32 1.40
241 277 5.027099 GGTTGACGAGTCGACTAGTTATTC 58.973 45.833 28.42 19.62 42.32 1.75
242 278 4.871993 TGACGAGTCGACTAGTTATTCC 57.128 45.455 28.42 17.31 31.94 3.01
243 279 4.256110 TGACGAGTCGACTAGTTATTCCA 58.744 43.478 28.42 19.39 31.94 3.53
244 280 4.696877 TGACGAGTCGACTAGTTATTCCAA 59.303 41.667 28.42 9.23 31.94 3.53
245 281 5.356190 TGACGAGTCGACTAGTTATTCCAAT 59.644 40.000 28.42 6.11 31.94 3.16
246 282 5.579718 ACGAGTCGACTAGTTATTCCAATG 58.420 41.667 23.53 0.00 0.00 2.82
247 283 5.125097 ACGAGTCGACTAGTTATTCCAATGT 59.875 40.000 23.53 0.00 0.00 2.71
248 284 6.034591 CGAGTCGACTAGTTATTCCAATGTT 58.965 40.000 20.09 0.00 0.00 2.71
249 285 6.020599 CGAGTCGACTAGTTATTCCAATGTTG 60.021 42.308 20.09 0.00 0.00 3.33
250 286 6.931838 AGTCGACTAGTTATTCCAATGTTGA 58.068 36.000 18.46 0.00 0.00 3.18
251 287 7.036220 AGTCGACTAGTTATTCCAATGTTGAG 58.964 38.462 18.46 0.00 0.00 3.02
252 288 7.033791 GTCGACTAGTTATTCCAATGTTGAGA 58.966 38.462 8.70 0.00 0.00 3.27
253 289 7.009357 GTCGACTAGTTATTCCAATGTTGAGAC 59.991 40.741 8.70 0.00 0.00 3.36
254 290 7.036220 CGACTAGTTATTCCAATGTTGAGACT 58.964 38.462 0.00 0.00 0.00 3.24
255 291 7.221067 CGACTAGTTATTCCAATGTTGAGACTC 59.779 40.741 0.00 0.00 0.00 3.36
256 292 7.907389 ACTAGTTATTCCAATGTTGAGACTCA 58.093 34.615 0.00 0.00 0.00 3.41
257 293 8.543774 ACTAGTTATTCCAATGTTGAGACTCAT 58.456 33.333 5.87 0.00 0.00 2.90
259 295 8.954950 AGTTATTCCAATGTTGAGACTCATAG 57.045 34.615 5.87 0.00 0.00 2.23
260 296 8.762645 AGTTATTCCAATGTTGAGACTCATAGA 58.237 33.333 5.87 0.00 0.00 1.98
261 297 8.821894 GTTATTCCAATGTTGAGACTCATAGAC 58.178 37.037 5.87 2.32 0.00 2.59
262 298 6.611613 TTCCAATGTTGAGACTCATAGACT 57.388 37.500 5.87 0.00 0.00 3.24
263 299 7.718334 TTCCAATGTTGAGACTCATAGACTA 57.282 36.000 5.87 0.00 0.00 2.59
264 300 7.340122 TCCAATGTTGAGACTCATAGACTAG 57.660 40.000 5.87 0.00 0.00 2.57
265 301 6.892456 TCCAATGTTGAGACTCATAGACTAGT 59.108 38.462 5.87 0.00 0.00 2.57
266 302 7.067615 TCCAATGTTGAGACTCATAGACTAGTC 59.932 40.741 15.41 15.41 42.02 2.59
267 303 6.612247 ATGTTGAGACTCATAGACTAGTCG 57.388 41.667 17.07 5.27 45.47 4.18
268 304 5.489249 TGTTGAGACTCATAGACTAGTCGT 58.511 41.667 17.07 8.55 45.47 4.34
269 305 5.351740 TGTTGAGACTCATAGACTAGTCGTG 59.648 44.000 17.07 18.39 45.47 4.35
270 306 5.340439 TGAGACTCATAGACTAGTCGTGA 57.660 43.478 23.64 23.64 45.47 4.35
271 307 5.110598 TGAGACTCATAGACTAGTCGTGAC 58.889 45.833 22.26 16.31 45.47 3.67
272 308 5.105269 TGAGACTCATAGACTAGTCGTGACT 60.105 44.000 22.26 19.37 45.47 3.41
273 309 6.096564 TGAGACTCATAGACTAGTCGTGACTA 59.903 42.308 22.26 9.25 45.47 2.59
274 310 6.876155 AGACTCATAGACTAGTCGTGACTAA 58.124 40.000 22.26 8.98 45.47 2.24
275 311 7.502696 AGACTCATAGACTAGTCGTGACTAAT 58.497 38.462 22.26 12.62 45.47 1.73
276 312 7.654520 AGACTCATAGACTAGTCGTGACTAATC 59.345 40.741 22.26 17.70 45.47 1.75
277 313 6.421501 ACTCATAGACTAGTCGTGACTAATCG 59.578 42.308 22.26 16.27 42.89 3.34
278 314 6.279123 TCATAGACTAGTCGTGACTAATCGT 58.721 40.000 22.26 6.51 42.89 3.73
279 315 4.861389 AGACTAGTCGTGACTAATCGTG 57.139 45.455 17.07 3.16 42.89 4.35
280 316 4.502016 AGACTAGTCGTGACTAATCGTGA 58.498 43.478 17.07 0.00 42.89 4.35
281 317 4.329528 AGACTAGTCGTGACTAATCGTGAC 59.670 45.833 17.07 1.75 42.89 3.67
282 318 3.999001 ACTAGTCGTGACTAATCGTGACA 59.001 43.478 10.68 0.00 42.72 3.58
283 319 3.909776 AGTCGTGACTAATCGTGACAA 57.090 42.857 0.00 0.00 40.43 3.18
284 320 3.822996 AGTCGTGACTAATCGTGACAAG 58.177 45.455 0.00 0.00 40.43 3.16
285 321 3.252701 AGTCGTGACTAATCGTGACAAGT 59.747 43.478 0.00 0.00 40.43 3.16
286 322 3.602915 GTCGTGACTAATCGTGACAAGTC 59.397 47.826 6.52 6.52 39.04 3.01
287 323 3.251487 TCGTGACTAATCGTGACAAGTCA 59.749 43.478 10.48 10.48 44.47 3.41
290 326 4.939271 TGACTAATCGTGACAAGTCAACA 58.061 39.130 4.20 0.00 43.90 3.33
291 327 4.743151 TGACTAATCGTGACAAGTCAACAC 59.257 41.667 4.20 0.00 43.90 3.32
292 328 4.945246 ACTAATCGTGACAAGTCAACACT 58.055 39.130 4.20 0.00 41.85 3.55
293 329 6.080648 ACTAATCGTGACAAGTCAACACTA 57.919 37.500 4.20 0.00 41.85 2.74
294 330 6.509656 ACTAATCGTGACAAGTCAACACTAA 58.490 36.000 4.20 0.00 41.85 2.24
295 331 6.982141 ACTAATCGTGACAAGTCAACACTAAA 59.018 34.615 4.20 0.00 41.85 1.85
296 332 5.907197 ATCGTGACAAGTCAACACTAAAG 57.093 39.130 4.20 0.00 41.85 1.85
297 333 4.751060 TCGTGACAAGTCAACACTAAAGT 58.249 39.130 4.20 0.00 41.85 2.66
298 334 5.172934 TCGTGACAAGTCAACACTAAAGTT 58.827 37.500 4.20 0.00 41.85 2.66
300 336 5.028375 GTGACAAGTCAACACTAAAGTTGC 58.972 41.667 4.20 0.00 46.44 4.17
301 337 4.201773 TGACAAGTCAACACTAAAGTTGCG 60.202 41.667 0.00 0.00 46.44 4.85
302 338 3.936453 ACAAGTCAACACTAAAGTTGCGA 59.064 39.130 2.14 0.00 46.44 5.10
303 339 4.574828 ACAAGTCAACACTAAAGTTGCGAT 59.425 37.500 2.14 0.00 46.44 4.58
304 340 5.065988 ACAAGTCAACACTAAAGTTGCGATT 59.934 36.000 2.14 0.00 46.44 3.34
305 341 5.344207 AGTCAACACTAAAGTTGCGATTC 57.656 39.130 2.14 0.00 46.44 2.52
306 342 4.814234 AGTCAACACTAAAGTTGCGATTCA 59.186 37.500 2.14 0.00 46.44 2.57
307 343 5.470098 AGTCAACACTAAAGTTGCGATTCAT 59.530 36.000 2.14 0.00 46.44 2.57
308 344 6.649141 AGTCAACACTAAAGTTGCGATTCATA 59.351 34.615 2.14 0.00 46.44 2.15
309 345 6.955963 GTCAACACTAAAGTTGCGATTCATAG 59.044 38.462 2.14 0.00 46.44 2.23
310 346 6.871492 TCAACACTAAAGTTGCGATTCATAGA 59.129 34.615 2.14 0.00 46.44 1.98
311 347 6.648725 ACACTAAAGTTGCGATTCATAGAC 57.351 37.500 0.00 0.00 0.00 2.59
312 348 6.398918 ACACTAAAGTTGCGATTCATAGACT 58.601 36.000 0.00 0.00 0.00 3.24
313 349 7.544622 ACACTAAAGTTGCGATTCATAGACTA 58.455 34.615 0.00 0.00 0.00 2.59
314 350 7.702772 ACACTAAAGTTGCGATTCATAGACTAG 59.297 37.037 0.00 0.00 0.00 2.57
315 351 7.702772 CACTAAAGTTGCGATTCATAGACTAGT 59.297 37.037 0.00 0.00 0.00 2.57
316 352 7.916450 ACTAAAGTTGCGATTCATAGACTAGTC 59.084 37.037 15.41 15.41 0.00 2.59
317 353 4.849883 AGTTGCGATTCATAGACTAGTCG 58.150 43.478 17.07 4.68 34.09 4.18
318 354 4.575236 AGTTGCGATTCATAGACTAGTCGA 59.425 41.667 17.07 12.76 34.09 4.20
319 355 4.469625 TGCGATTCATAGACTAGTCGAC 57.530 45.455 17.07 7.70 34.09 4.20
320 356 3.875134 TGCGATTCATAGACTAGTCGACA 59.125 43.478 19.50 7.23 34.09 4.35
321 357 4.212911 GCGATTCATAGACTAGTCGACAC 58.787 47.826 19.50 6.17 34.09 3.67
322 358 4.024725 GCGATTCATAGACTAGTCGACACT 60.025 45.833 19.50 13.07 36.55 3.55
323 359 5.436410 CGATTCATAGACTAGTCGACACTG 58.564 45.833 19.50 9.49 33.62 3.66
324 360 5.234543 CGATTCATAGACTAGTCGACACTGA 59.765 44.000 19.50 9.99 33.62 3.41
325 361 6.238130 CGATTCATAGACTAGTCGACACTGAA 60.238 42.308 19.50 17.25 33.62 3.02
326 362 6.424176 TTCATAGACTAGTCGACACTGAAG 57.576 41.667 19.50 9.06 33.62 3.02
327 363 5.489249 TCATAGACTAGTCGACACTGAAGT 58.511 41.667 19.50 12.14 33.62 3.01
328 364 5.351740 TCATAGACTAGTCGACACTGAAGTG 59.648 44.000 19.50 8.91 42.19 3.16
476 1973 4.222145 TGGGACAGAGAAAGTATGGTGTAC 59.778 45.833 0.00 0.00 0.00 2.90
576 2083 2.571653 AGAATCCATTCCACCAGTCGAA 59.428 45.455 0.00 0.00 37.51 3.71
625 2132 0.602905 CCCTCCGTTCACACTTCACC 60.603 60.000 0.00 0.00 0.00 4.02
632 2147 2.661675 CGTTCACACTTCACCGTCTATG 59.338 50.000 0.00 0.00 0.00 2.23
686 2201 5.039480 CAGTTCACCTATTTCAACTGCAG 57.961 43.478 13.48 13.48 39.37 4.41
761 2278 0.117140 TCCCCTTCTCTGCTCCTGAA 59.883 55.000 0.00 0.00 0.00 3.02
804 2322 0.106015 AAGGGGGTAAGCATGCATCC 60.106 55.000 21.98 17.56 0.00 3.51
861 2379 1.246737 CCTTGGCCCTTCAGTTCAGC 61.247 60.000 0.00 0.00 0.00 4.26
880 2398 1.871772 GCTTCTGTGCGCATCTGTT 59.128 52.632 15.91 0.00 0.00 3.16
893 2411 2.807967 GCATCTGTTAGTGTGCTTGTCA 59.192 45.455 0.00 0.00 34.85 3.58
971 2489 1.290134 AGGCTTCTTTACCCCCTCAG 58.710 55.000 0.00 0.00 0.00 3.35
973 2491 1.210722 GGCTTCTTTACCCCCTCAGAG 59.789 57.143 0.00 0.00 0.00 3.35
1012 2530 2.486203 TGTTGGCATATGGTTCAACGAC 59.514 45.455 4.56 0.00 41.45 4.34
1037 2571 3.098555 GGTTGCCAACCGCGATAG 58.901 61.111 11.51 0.00 42.62 2.08
1060 2594 1.538849 CGATCACCGATGCTTCATCCA 60.539 52.381 0.08 0.00 41.76 3.41
1329 2863 0.554792 CTTGGAAGGGCCCTGATGAT 59.445 55.000 29.50 9.49 34.97 2.45
1584 3118 2.593257 GTTGACTACTCCGGAAAGACG 58.407 52.381 18.04 3.39 0.00 4.18
1627 3161 1.002624 TTGACAGATTGGACCGCCC 60.003 57.895 0.00 0.00 0.00 6.13
1639 3176 0.818040 GACCGCCCTTCAACAGTTGT 60.818 55.000 13.14 0.00 0.00 3.32
1648 3185 3.059597 CCTTCAACAGTTGTCAGCTTACG 60.060 47.826 13.14 0.00 0.00 3.18
1769 3306 1.270907 ACAGAGTGGGTTAGAGGCAG 58.729 55.000 0.00 0.00 0.00 4.85
1822 3359 0.678048 GCAATGTGGTGGAGAGGACC 60.678 60.000 0.00 0.00 0.00 4.46
1999 3536 4.269523 GGTGCCTGCTGTGGACCA 62.270 66.667 14.34 0.00 31.82 4.02
2136 3742 8.939201 TGAATGTTTCAGTTTAAGAATTTGCA 57.061 26.923 0.00 0.00 34.08 4.08
2156 3762 6.816134 TGCATGTAACATAAAAAGCAGAGA 57.184 33.333 0.00 0.00 0.00 3.10
2282 3891 5.873179 TCCTAACATGCTAAACCGAAAAG 57.127 39.130 0.00 0.00 0.00 2.27
2392 4012 7.773864 TGTCAATGCATTTAATATGCCAAAG 57.226 32.000 9.83 0.00 43.94 2.77
2425 4061 0.892358 AGTGAGCCCAAGTGCACATG 60.892 55.000 21.04 17.86 34.41 3.21
2451 4087 9.423061 GTAAAACATTCCTGATGCAATTAACTT 57.577 29.630 0.00 0.00 39.47 2.66
2529 4429 4.062991 ACTTCGTAGCATCGTTCCTTTTT 58.937 39.130 0.00 0.00 0.00 1.94
2625 4525 1.473258 GCATGCCTTGTATGGTTCCA 58.527 50.000 6.36 0.00 0.00 3.53
2665 4567 8.587608 AGTCCATTGATTTAATTCTTGAAGCAA 58.412 29.630 0.00 0.00 38.57 3.91
2775 4679 2.133742 GATGATGGGGGATTTGCGCG 62.134 60.000 0.00 0.00 0.00 6.86
2882 4790 5.733620 TGTACAATTTACTCGGAGAAGGT 57.266 39.130 12.86 2.53 34.09 3.50
3042 4954 2.550830 ATAATGCAGGGGCTCTTACG 57.449 50.000 0.00 0.00 41.91 3.18
3083 4995 3.673594 CGTTAACAGGCTGAGTAGAGGTG 60.674 52.174 23.66 0.00 0.00 4.00
3103 5015 2.335933 GCTAGGCAGGGGGTAATAGAA 58.664 52.381 0.00 0.00 0.00 2.10
3309 5225 5.302568 GCCACATCTGAAATCATAATCCCAA 59.697 40.000 0.00 0.00 0.00 4.12
3310 5226 6.014840 GCCACATCTGAAATCATAATCCCAAT 60.015 38.462 0.00 0.00 0.00 3.16
3311 5227 7.600065 CCACATCTGAAATCATAATCCCAATC 58.400 38.462 0.00 0.00 0.00 2.67
3312 5228 7.309621 CCACATCTGAAATCATAATCCCAATCC 60.310 40.741 0.00 0.00 0.00 3.01
3313 5229 6.723052 ACATCTGAAATCATAATCCCAATCCC 59.277 38.462 0.00 0.00 0.00 3.85
3314 5230 6.278438 TCTGAAATCATAATCCCAATCCCA 57.722 37.500 0.00 0.00 0.00 4.37
3494 5412 6.520021 TGGAGACATGAATCCCAAGATATT 57.480 37.500 15.37 0.00 34.47 1.28
3504 5422 8.606754 TGAATCCCAAGATATTTGATTTTGGA 57.393 30.769 8.10 0.00 40.52 3.53
3681 5607 6.764379 TGATTTATCCAGCGGTTATATGTCA 58.236 36.000 0.00 0.00 0.00 3.58
3682 5608 7.220740 TGATTTATCCAGCGGTTATATGTCAA 58.779 34.615 0.00 0.00 0.00 3.18
3748 5674 1.491668 TAGCTTCGGGGTATTGCTCA 58.508 50.000 0.00 0.00 35.47 4.26
3869 5798 2.684881 CTCCATAATGCCTTGACCACAC 59.315 50.000 0.00 0.00 0.00 3.82
3875 5804 0.813610 TGCCTTGACCACACGACTTG 60.814 55.000 0.00 0.00 0.00 3.16
3883 5822 4.667262 TGACCACACGACTTGAAATTTTG 58.333 39.130 0.00 0.00 0.00 2.44
3888 5829 6.816140 ACCACACGACTTGAAATTTTGATTTT 59.184 30.769 0.00 0.00 0.00 1.82
3894 5835 9.862585 ACGACTTGAAATTTTGATTTTATTTGC 57.137 25.926 0.00 0.00 0.00 3.68
4015 5956 1.748493 GTTGGGCTCTTGTGTGTTCAA 59.252 47.619 0.00 0.00 0.00 2.69
4105 6046 1.742411 GCAACGCCTGATAAGCCACTA 60.742 52.381 0.00 0.00 0.00 2.74
4154 6098 3.006112 AGAGAGCAGAATACGGTCAGA 57.994 47.619 0.00 0.00 33.29 3.27
4194 6138 4.880164 ACTCTTACAGTAATAGAGGGGCA 58.120 43.478 11.68 0.00 39.73 5.36
4200 6144 2.300437 CAGTAATAGAGGGGCAGTAGGC 59.700 54.545 0.00 0.00 43.74 3.93
4213 6157 3.067833 GCAGTAGGCTCTCGAAGTTTTT 58.932 45.455 0.00 0.00 40.25 1.94
4220 6164 4.640647 AGGCTCTCGAAGTTTTTGAGTTTT 59.359 37.500 6.08 0.00 41.16 2.43
4254 6198 2.479566 TCTCAGTTGTCCCAGCAATC 57.520 50.000 0.00 0.00 0.00 2.67
4279 6223 2.825836 GGATTCAGCTGCCACCGG 60.826 66.667 9.47 0.00 0.00 5.28
4294 6238 1.667830 CCGGAATCACACGCACTGT 60.668 57.895 0.00 0.00 0.00 3.55
4302 6246 1.954382 TCACACGCACTGTAGTTCTCT 59.046 47.619 0.00 0.00 0.00 3.10
4318 6262 1.820519 TCTCTTTTGATGTGGCATGGC 59.179 47.619 13.29 13.29 0.00 4.40
4333 6277 3.872511 CATGGCATGCCTTACAGAAAA 57.127 42.857 35.53 14.13 36.94 2.29
4336 6282 4.888326 TGGCATGCCTTACAGAAAATTT 57.112 36.364 35.53 0.00 36.94 1.82
4338 6284 4.996122 TGGCATGCCTTACAGAAAATTTTG 59.004 37.500 35.53 0.00 36.94 2.44
4345 6291 8.810652 TGCCTTACAGAAAATTTTGTTGTATC 57.189 30.769 18.38 13.49 0.00 2.24
4360 6306 8.918202 TTTGTTGTATCTGTATTTTCCACTCT 57.082 30.769 0.00 0.00 0.00 3.24
4369 6328 8.783660 TCTGTATTTTCCACTCTAGTATGGAT 57.216 34.615 15.58 6.68 44.49 3.41
4376 6335 5.389520 TCCACTCTAGTATGGATTCTGGAG 58.610 45.833 12.11 5.46 40.17 3.86
4380 6339 8.110271 CCACTCTAGTATGGATTCTGGAGTATA 58.890 40.741 10.56 0.00 45.76 1.47
4391 6350 8.475639 TGGATTCTGGAGTATAACAGTTTCTAC 58.524 37.037 0.00 0.00 36.17 2.59
4392 6351 8.697292 GGATTCTGGAGTATAACAGTTTCTACT 58.303 37.037 7.59 7.59 36.17 2.57
4420 6379 7.436430 TTTTAATAAACCATGCTGTACGTCA 57.564 32.000 0.00 0.00 0.00 4.35
4425 6384 1.275010 ACCATGCTGTACGTCATGACA 59.725 47.619 24.93 4.12 41.82 3.58
4431 6390 3.004944 TGCTGTACGTCATGACAAGTACA 59.995 43.478 29.24 29.24 44.64 2.90
4508 6470 8.945481 AGAGATACAGAAGAAAGATTGATGTG 57.055 34.615 0.00 0.00 0.00 3.21
4509 6471 8.538701 AGAGATACAGAAGAAAGATTGATGTGT 58.461 33.333 0.00 0.00 0.00 3.72
4511 6473 8.944029 AGATACAGAAGAAAGATTGATGTGTTG 58.056 33.333 0.00 0.00 0.00 3.33
4512 6474 5.766222 ACAGAAGAAAGATTGATGTGTTGC 58.234 37.500 0.00 0.00 0.00 4.17
4513 6475 5.533903 ACAGAAGAAAGATTGATGTGTTGCT 59.466 36.000 0.00 0.00 0.00 3.91
4514 6476 5.856986 CAGAAGAAAGATTGATGTGTTGCTG 59.143 40.000 0.00 0.00 0.00 4.41
4515 6477 5.766670 AGAAGAAAGATTGATGTGTTGCTGA 59.233 36.000 0.00 0.00 0.00 4.26
4516 6478 5.624344 AGAAAGATTGATGTGTTGCTGAG 57.376 39.130 0.00 0.00 0.00 3.35
4517 6479 5.068636 AGAAAGATTGATGTGTTGCTGAGT 58.931 37.500 0.00 0.00 0.00 3.41
4518 6480 4.761235 AAGATTGATGTGTTGCTGAGTG 57.239 40.909 0.00 0.00 0.00 3.51
4519 6481 2.486982 AGATTGATGTGTTGCTGAGTGC 59.513 45.455 0.00 0.00 43.25 4.40
4520 6482 1.971481 TTGATGTGTTGCTGAGTGCT 58.029 45.000 0.00 0.00 43.37 4.40
4521 6483 1.232119 TGATGTGTTGCTGAGTGCTG 58.768 50.000 0.00 0.00 43.37 4.41
4522 6484 1.202675 TGATGTGTTGCTGAGTGCTGA 60.203 47.619 0.00 0.00 43.37 4.26
4523 6485 2.082231 GATGTGTTGCTGAGTGCTGAT 58.918 47.619 0.00 0.00 43.37 2.90
4524 6486 1.232119 TGTGTTGCTGAGTGCTGATG 58.768 50.000 0.00 0.00 43.37 3.07
4525 6487 1.233019 GTGTTGCTGAGTGCTGATGT 58.767 50.000 0.00 0.00 43.37 3.06
4526 6488 1.605710 GTGTTGCTGAGTGCTGATGTT 59.394 47.619 0.00 0.00 43.37 2.71
4527 6489 1.605232 TGTTGCTGAGTGCTGATGTTG 59.395 47.619 0.00 0.00 43.37 3.33
4528 6490 1.605710 GTTGCTGAGTGCTGATGTTGT 59.394 47.619 0.00 0.00 43.37 3.32
4529 6491 1.232119 TGCTGAGTGCTGATGTTGTG 58.768 50.000 0.00 0.00 43.37 3.33
4530 6492 0.520404 GCTGAGTGCTGATGTTGTGG 59.480 55.000 0.00 0.00 38.95 4.17
4531 6493 0.520404 CTGAGTGCTGATGTTGTGGC 59.480 55.000 0.00 0.00 0.00 5.01
4532 6494 0.890542 TGAGTGCTGATGTTGTGGCC 60.891 55.000 0.00 0.00 0.00 5.36
4533 6495 0.890542 GAGTGCTGATGTTGTGGCCA 60.891 55.000 0.00 0.00 0.00 5.36
4534 6496 1.174712 AGTGCTGATGTTGTGGCCAC 61.175 55.000 29.67 29.67 0.00 5.01
4535 6497 1.902918 TGCTGATGTTGTGGCCACC 60.903 57.895 32.62 18.79 0.00 4.61
4536 6498 1.604593 GCTGATGTTGTGGCCACCT 60.605 57.895 32.62 14.84 0.00 4.00
4537 6499 1.870055 GCTGATGTTGTGGCCACCTG 61.870 60.000 32.62 20.03 0.00 4.00
4538 6500 0.250858 CTGATGTTGTGGCCACCTGA 60.251 55.000 32.62 16.34 0.00 3.86
4539 6501 0.405198 TGATGTTGTGGCCACCTGAT 59.595 50.000 32.62 20.28 0.00 2.90
4540 6502 1.632920 TGATGTTGTGGCCACCTGATA 59.367 47.619 32.62 16.88 0.00 2.15
4541 6503 2.241941 TGATGTTGTGGCCACCTGATAT 59.758 45.455 32.62 20.56 0.00 1.63
4542 6504 2.127271 TGTTGTGGCCACCTGATATG 57.873 50.000 32.62 0.00 0.00 1.78
4543 6505 0.740737 GTTGTGGCCACCTGATATGC 59.259 55.000 32.62 5.24 0.00 3.14
4544 6506 0.625316 TTGTGGCCACCTGATATGCT 59.375 50.000 32.62 0.00 0.00 3.79
4545 6507 0.625316 TGTGGCCACCTGATATGCTT 59.375 50.000 32.62 0.00 0.00 3.91
4546 6508 1.005805 TGTGGCCACCTGATATGCTTT 59.994 47.619 32.62 0.00 0.00 3.51
4547 6509 2.240921 TGTGGCCACCTGATATGCTTTA 59.759 45.455 32.62 6.51 0.00 1.85
4548 6510 3.287222 GTGGCCACCTGATATGCTTTAA 58.713 45.455 26.31 0.00 0.00 1.52
4549 6511 3.066760 GTGGCCACCTGATATGCTTTAAC 59.933 47.826 26.31 0.00 0.00 2.01
4550 6512 2.623416 GGCCACCTGATATGCTTTAACC 59.377 50.000 0.00 0.00 0.00 2.85
4551 6513 3.555966 GCCACCTGATATGCTTTAACCT 58.444 45.455 0.00 0.00 0.00 3.50
4552 6514 4.445735 GGCCACCTGATATGCTTTAACCTA 60.446 45.833 0.00 0.00 0.00 3.08
4553 6515 5.316987 GCCACCTGATATGCTTTAACCTAT 58.683 41.667 0.00 0.00 0.00 2.57
4554 6516 5.770162 GCCACCTGATATGCTTTAACCTATT 59.230 40.000 0.00 0.00 0.00 1.73
4555 6517 6.940298 GCCACCTGATATGCTTTAACCTATTA 59.060 38.462 0.00 0.00 0.00 0.98
4556 6518 7.094762 GCCACCTGATATGCTTTAACCTATTAC 60.095 40.741 0.00 0.00 0.00 1.89
4557 6519 8.157476 CCACCTGATATGCTTTAACCTATTACT 58.843 37.037 0.00 0.00 0.00 2.24
4558 6520 9.209175 CACCTGATATGCTTTAACCTATTACTC 57.791 37.037 0.00 0.00 0.00 2.59
4559 6521 9.160412 ACCTGATATGCTTTAACCTATTACTCT 57.840 33.333 0.00 0.00 0.00 3.24
4562 6524 9.998106 TGATATGCTTTAACCTATTACTCTTCC 57.002 33.333 0.00 0.00 0.00 3.46
4565 6527 6.650120 TGCTTTAACCTATTACTCTTCCTGG 58.350 40.000 0.00 0.00 0.00 4.45
4566 6528 5.527951 GCTTTAACCTATTACTCTTCCTGGC 59.472 44.000 0.00 0.00 0.00 4.85
4567 6529 3.821421 AACCTATTACTCTTCCTGGCG 57.179 47.619 0.00 0.00 0.00 5.69
4568 6530 2.748388 ACCTATTACTCTTCCTGGCGT 58.252 47.619 0.00 0.00 0.00 5.68
4569 6531 3.105283 ACCTATTACTCTTCCTGGCGTT 58.895 45.455 0.00 0.00 0.00 4.84
4570 6532 4.284178 ACCTATTACTCTTCCTGGCGTTA 58.716 43.478 0.00 0.00 0.00 3.18
4571 6533 4.900054 ACCTATTACTCTTCCTGGCGTTAT 59.100 41.667 0.00 0.00 0.00 1.89
4572 6534 5.365895 ACCTATTACTCTTCCTGGCGTTATT 59.634 40.000 0.00 0.00 0.00 1.40
4573 6535 5.927115 CCTATTACTCTTCCTGGCGTTATTC 59.073 44.000 0.00 0.00 0.00 1.75
4574 6536 5.615925 ATTACTCTTCCTGGCGTTATTCT 57.384 39.130 0.00 0.00 0.00 2.40
4575 6537 3.983044 ACTCTTCCTGGCGTTATTCTT 57.017 42.857 0.00 0.00 0.00 2.52
4576 6538 3.600388 ACTCTTCCTGGCGTTATTCTTG 58.400 45.455 0.00 0.00 0.00 3.02
4577 6539 3.260884 ACTCTTCCTGGCGTTATTCTTGA 59.739 43.478 0.00 0.00 0.00 3.02
4578 6540 4.080863 ACTCTTCCTGGCGTTATTCTTGAT 60.081 41.667 0.00 0.00 0.00 2.57
4579 6541 4.191544 TCTTCCTGGCGTTATTCTTGATG 58.808 43.478 0.00 0.00 0.00 3.07
4580 6542 2.288666 TCCTGGCGTTATTCTTGATGC 58.711 47.619 0.00 0.00 0.00 3.91
4581 6543 2.092968 TCCTGGCGTTATTCTTGATGCT 60.093 45.455 0.00 0.00 0.00 3.79
4582 6544 3.133901 TCCTGGCGTTATTCTTGATGCTA 59.866 43.478 0.00 0.00 0.00 3.49
4583 6545 4.067896 CCTGGCGTTATTCTTGATGCTAT 58.932 43.478 0.00 0.00 0.00 2.97
4584 6546 4.153117 CCTGGCGTTATTCTTGATGCTATC 59.847 45.833 0.00 0.00 0.00 2.08
4585 6547 4.065088 TGGCGTTATTCTTGATGCTATCC 58.935 43.478 0.00 0.00 0.00 2.59
4586 6548 4.065088 GGCGTTATTCTTGATGCTATCCA 58.935 43.478 0.00 0.00 0.00 3.41
4587 6549 4.697352 GGCGTTATTCTTGATGCTATCCAT 59.303 41.667 0.00 0.00 36.70 3.41
4588 6550 5.391310 GGCGTTATTCTTGATGCTATCCATG 60.391 44.000 0.00 0.00 33.29 3.66
4589 6551 5.409520 GCGTTATTCTTGATGCTATCCATGA 59.590 40.000 0.00 0.00 33.29 3.07
4590 6552 6.093219 GCGTTATTCTTGATGCTATCCATGAT 59.907 38.462 0.00 0.00 33.29 2.45
4591 6553 7.278646 GCGTTATTCTTGATGCTATCCATGATA 59.721 37.037 0.00 0.00 33.29 2.15
4592 6554 9.322773 CGTTATTCTTGATGCTATCCATGATAT 57.677 33.333 0.00 0.00 33.29 1.63
4596 6558 8.788325 TTCTTGATGCTATCCATGATATCAAG 57.212 34.615 9.99 15.10 38.80 3.02
4597 6559 7.914859 TCTTGATGCTATCCATGATATCAAGT 58.085 34.615 9.99 0.00 38.69 3.16
4598 6560 8.380867 TCTTGATGCTATCCATGATATCAAGTT 58.619 33.333 9.99 2.60 38.69 2.66
4942 6904 2.554806 ACTCGTATTTCATCACGCGA 57.445 45.000 15.93 0.00 38.05 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.047377 AGGCATTTGATTAACGATGTTTGGT 60.047 36.000 0.00 0.00 0.00 3.67
222 258 4.871993 TGGAATAACTAGTCGACTCGTC 57.128 45.455 23.89 9.58 0.00 4.20
223 259 5.125097 ACATTGGAATAACTAGTCGACTCGT 59.875 40.000 23.89 19.72 0.00 4.18
224 260 5.579718 ACATTGGAATAACTAGTCGACTCG 58.420 41.667 23.89 18.96 0.00 4.18
225 261 7.033791 TCAACATTGGAATAACTAGTCGACTC 58.966 38.462 23.89 5.70 0.00 3.36
226 262 6.931838 TCAACATTGGAATAACTAGTCGACT 58.068 36.000 23.66 23.66 0.00 4.18
227 263 7.009357 GTCTCAACATTGGAATAACTAGTCGAC 59.991 40.741 7.70 7.70 0.00 4.20
228 264 7.033791 GTCTCAACATTGGAATAACTAGTCGA 58.966 38.462 0.00 0.00 0.00 4.20
229 265 7.036220 AGTCTCAACATTGGAATAACTAGTCG 58.964 38.462 0.00 0.00 0.00 4.18
230 266 8.035394 TGAGTCTCAACATTGGAATAACTAGTC 58.965 37.037 0.00 0.00 0.00 2.59
231 267 7.907389 TGAGTCTCAACATTGGAATAACTAGT 58.093 34.615 0.00 0.00 0.00 2.57
232 268 8.954950 ATGAGTCTCAACATTGGAATAACTAG 57.045 34.615 6.64 0.00 0.00 2.57
234 270 8.762645 TCTATGAGTCTCAACATTGGAATAACT 58.237 33.333 6.64 0.00 0.00 2.24
235 271 8.821894 GTCTATGAGTCTCAACATTGGAATAAC 58.178 37.037 6.64 0.00 0.00 1.89
236 272 8.762645 AGTCTATGAGTCTCAACATTGGAATAA 58.237 33.333 6.64 0.00 0.00 1.40
237 273 8.311395 AGTCTATGAGTCTCAACATTGGAATA 57.689 34.615 6.64 0.00 0.00 1.75
238 274 7.192852 AGTCTATGAGTCTCAACATTGGAAT 57.807 36.000 6.64 0.00 0.00 3.01
239 275 6.611613 AGTCTATGAGTCTCAACATTGGAA 57.388 37.500 6.64 0.00 0.00 3.53
240 276 6.892456 ACTAGTCTATGAGTCTCAACATTGGA 59.108 38.462 6.64 0.00 0.00 3.53
241 277 7.106439 ACTAGTCTATGAGTCTCAACATTGG 57.894 40.000 6.64 0.00 0.00 3.16
242 278 6.909895 CGACTAGTCTATGAGTCTCAACATTG 59.090 42.308 20.34 0.00 40.01 2.82
243 279 6.600032 ACGACTAGTCTATGAGTCTCAACATT 59.400 38.462 20.34 0.00 40.01 2.71
244 280 6.037720 CACGACTAGTCTATGAGTCTCAACAT 59.962 42.308 20.34 0.00 40.01 2.71
245 281 5.351740 CACGACTAGTCTATGAGTCTCAACA 59.648 44.000 20.34 0.00 40.01 3.33
246 282 5.581479 TCACGACTAGTCTATGAGTCTCAAC 59.419 44.000 20.34 0.61 40.01 3.18
247 283 5.581479 GTCACGACTAGTCTATGAGTCTCAA 59.419 44.000 20.96 2.47 40.01 3.02
248 284 5.105269 AGTCACGACTAGTCTATGAGTCTCA 60.105 44.000 20.96 4.68 40.43 3.27
249 285 5.353938 AGTCACGACTAGTCTATGAGTCTC 58.646 45.833 20.96 12.61 40.43 3.36
250 286 5.347620 AGTCACGACTAGTCTATGAGTCT 57.652 43.478 20.96 14.88 40.43 3.24
251 287 7.358600 CGATTAGTCACGACTAGTCTATGAGTC 60.359 44.444 25.87 18.54 43.94 3.36
252 288 6.421501 CGATTAGTCACGACTAGTCTATGAGT 59.578 42.308 25.60 25.60 43.94 3.41
253 289 6.421501 ACGATTAGTCACGACTAGTCTATGAG 59.578 42.308 20.96 13.42 43.94 2.90
254 290 6.200475 CACGATTAGTCACGACTAGTCTATGA 59.800 42.308 20.34 19.04 43.94 2.15
255 291 6.200475 TCACGATTAGTCACGACTAGTCTATG 59.800 42.308 20.34 17.22 43.94 2.23
256 292 6.200665 GTCACGATTAGTCACGACTAGTCTAT 59.799 42.308 20.34 6.03 43.94 1.98
257 293 5.518128 GTCACGATTAGTCACGACTAGTCTA 59.482 44.000 20.34 3.14 43.94 2.59
258 294 4.329528 GTCACGATTAGTCACGACTAGTCT 59.670 45.833 20.34 4.14 43.94 3.24
259 295 4.092529 TGTCACGATTAGTCACGACTAGTC 59.907 45.833 13.18 13.18 43.92 2.59
260 296 3.999001 TGTCACGATTAGTCACGACTAGT 59.001 43.478 6.98 0.00 43.92 2.57
261 297 4.595198 TGTCACGATTAGTCACGACTAG 57.405 45.455 6.98 0.00 43.92 2.57
262 298 4.453478 ACTTGTCACGATTAGTCACGACTA 59.547 41.667 2.74 2.74 42.54 2.59
263 299 3.252701 ACTTGTCACGATTAGTCACGACT 59.747 43.478 4.87 4.87 45.02 4.18
264 300 3.562505 ACTTGTCACGATTAGTCACGAC 58.437 45.455 0.00 0.00 0.00 4.34
265 301 3.251487 TGACTTGTCACGATTAGTCACGA 59.749 43.478 0.00 0.00 41.34 4.35
266 302 3.561503 TGACTTGTCACGATTAGTCACG 58.438 45.455 0.00 0.00 41.34 4.35
267 303 4.743151 TGTTGACTTGTCACGATTAGTCAC 59.257 41.667 2.62 8.86 44.68 3.67
268 304 4.743151 GTGTTGACTTGTCACGATTAGTCA 59.257 41.667 2.62 0.00 43.69 3.41
269 305 4.982916 AGTGTTGACTTGTCACGATTAGTC 59.017 41.667 2.62 0.00 37.97 2.59
270 306 4.945246 AGTGTTGACTTGTCACGATTAGT 58.055 39.130 2.62 0.00 37.20 2.24
271 307 7.169308 ACTTTAGTGTTGACTTGTCACGATTAG 59.831 37.037 2.62 0.00 37.20 1.73
272 308 6.982141 ACTTTAGTGTTGACTTGTCACGATTA 59.018 34.615 2.62 0.00 37.20 1.75
273 309 5.815740 ACTTTAGTGTTGACTTGTCACGATT 59.184 36.000 2.62 0.00 37.20 3.34
274 310 5.357257 ACTTTAGTGTTGACTTGTCACGAT 58.643 37.500 2.62 0.00 37.20 3.73
275 311 4.751060 ACTTTAGTGTTGACTTGTCACGA 58.249 39.130 2.62 0.00 37.20 4.35
276 312 5.464965 AACTTTAGTGTTGACTTGTCACG 57.535 39.130 2.62 0.00 37.20 4.35
287 323 6.874134 AGTCTATGAATCGCAACTTTAGTGTT 59.126 34.615 0.00 0.00 0.00 3.32
288 324 6.398918 AGTCTATGAATCGCAACTTTAGTGT 58.601 36.000 0.00 0.00 0.00 3.55
289 325 6.893958 AGTCTATGAATCGCAACTTTAGTG 57.106 37.500 0.00 0.00 0.00 2.74
290 326 7.773149 ACTAGTCTATGAATCGCAACTTTAGT 58.227 34.615 0.00 0.00 0.00 2.24
291 327 7.112287 CGACTAGTCTATGAATCGCAACTTTAG 59.888 40.741 20.34 0.00 0.00 1.85
292 328 6.910972 CGACTAGTCTATGAATCGCAACTTTA 59.089 38.462 20.34 0.00 0.00 1.85
293 329 5.744345 CGACTAGTCTATGAATCGCAACTTT 59.256 40.000 20.34 0.00 0.00 2.66
294 330 5.066117 TCGACTAGTCTATGAATCGCAACTT 59.934 40.000 20.34 0.00 0.00 2.66
295 331 4.575236 TCGACTAGTCTATGAATCGCAACT 59.425 41.667 20.34 0.00 0.00 3.16
296 332 4.671516 GTCGACTAGTCTATGAATCGCAAC 59.328 45.833 20.34 0.00 0.00 4.17
297 333 4.334481 TGTCGACTAGTCTATGAATCGCAA 59.666 41.667 20.34 0.00 0.00 4.85
298 334 3.875134 TGTCGACTAGTCTATGAATCGCA 59.125 43.478 20.34 5.58 0.00 5.10
299 335 4.024725 AGTGTCGACTAGTCTATGAATCGC 60.025 45.833 20.34 4.65 0.00 4.58
300 336 5.234543 TCAGTGTCGACTAGTCTATGAATCG 59.765 44.000 20.34 5.71 0.00 3.34
301 337 6.606234 TCAGTGTCGACTAGTCTATGAATC 57.394 41.667 20.34 7.35 0.00 2.52
302 338 6.600032 ACTTCAGTGTCGACTAGTCTATGAAT 59.400 38.462 20.34 9.79 0.00 2.57
303 339 5.938710 ACTTCAGTGTCGACTAGTCTATGAA 59.061 40.000 20.34 18.20 0.00 2.57
304 340 5.351740 CACTTCAGTGTCGACTAGTCTATGA 59.648 44.000 20.34 13.04 40.96 2.15
305 341 5.564768 CACTTCAGTGTCGACTAGTCTATG 58.435 45.833 20.34 11.17 40.96 2.23
306 342 5.804692 CACTTCAGTGTCGACTAGTCTAT 57.195 43.478 20.34 0.00 40.96 1.98
320 356 0.542232 AGGGCCGACTACACTTCAGT 60.542 55.000 0.00 0.00 0.00 3.41
321 357 0.108615 CAGGGCCGACTACACTTCAG 60.109 60.000 0.00 0.00 0.00 3.02
322 358 1.541310 CCAGGGCCGACTACACTTCA 61.541 60.000 0.00 0.00 0.00 3.02
323 359 1.218316 CCAGGGCCGACTACACTTC 59.782 63.158 0.00 0.00 0.00 3.01
324 360 1.229082 TCCAGGGCCGACTACACTT 60.229 57.895 0.00 0.00 0.00 3.16
325 361 1.682684 CTCCAGGGCCGACTACACT 60.683 63.158 0.00 0.00 0.00 3.55
326 362 1.542187 AACTCCAGGGCCGACTACAC 61.542 60.000 0.00 0.00 0.00 2.90
327 363 1.229082 AACTCCAGGGCCGACTACA 60.229 57.895 0.00 0.00 0.00 2.74
328 364 1.218316 CAACTCCAGGGCCGACTAC 59.782 63.158 0.00 0.00 0.00 2.73
388 524 5.421056 TCATTACTTCCATGGACTACGAGTT 59.579 40.000 15.91 0.00 0.00 3.01
476 1973 5.300752 TGGTAAGACAAAGAAAGCAGAGAG 58.699 41.667 0.00 0.00 0.00 3.20
591 2098 3.694566 ACGGAGGGCAGTATTTCAAATTC 59.305 43.478 0.00 0.00 0.00 2.17
686 2201 5.536260 AGAGTGAACTACGAAAACTAACCC 58.464 41.667 0.00 0.00 0.00 4.11
761 2278 7.009179 TCTTTGAGTTACAAGTGATGAGGAT 57.991 36.000 0.00 0.00 39.77 3.24
804 2322 0.390472 GACCAAGTGGAGAGAAGGCG 60.390 60.000 3.83 0.00 38.94 5.52
893 2411 0.901124 GGAGTGAGTCTCATGCCAGT 59.099 55.000 5.68 0.00 44.40 4.00
971 2489 9.503427 GCCAACATACATATTTTTAGTTGACTC 57.497 33.333 0.00 0.00 37.62 3.36
973 2491 9.801873 ATGCCAACATACATATTTTTAGTTGAC 57.198 29.630 0.00 0.00 37.62 3.18
1012 2530 1.966762 GGTTGGCAACCCAGACATG 59.033 57.895 34.31 0.00 46.12 3.21
1037 2571 0.179111 TGAAGCATCGGTGATCGGAC 60.179 55.000 0.00 0.00 39.77 4.79
1060 2594 2.224426 TGTTGGTCATAGAAAGCACCGT 60.224 45.455 0.00 0.00 0.00 4.83
1329 2863 0.472471 AGAACCTGCCTTTTGACGGA 59.528 50.000 0.00 0.00 0.00 4.69
1584 3118 4.454678 TGGTATTCCATCTCAACAGCATC 58.545 43.478 0.00 0.00 39.03 3.91
1627 3161 3.802139 TCGTAAGCTGACAACTGTTGAAG 59.198 43.478 26.00 21.07 37.18 3.02
1639 3176 2.881074 GAGATTGCACTCGTAAGCTGA 58.119 47.619 0.00 0.00 33.34 4.26
1648 3185 4.993584 ACAATATCCATCGAGATTGCACTC 59.006 41.667 7.48 0.00 46.93 3.51
1660 3197 3.436704 CCGTATGCACCACAATATCCATC 59.563 47.826 0.00 0.00 0.00 3.51
1806 3343 0.836400 AACGGTCCTCTCCACCACAT 60.836 55.000 0.00 0.00 32.89 3.21
1822 3359 0.040067 GCTGGCAAGGTCAAGAAACG 60.040 55.000 0.00 0.00 0.00 3.60
1999 3536 0.904865 TCCACGTCAATCAGCTCCCT 60.905 55.000 0.00 0.00 0.00 4.20
2136 3742 9.013229 TGTCATTCTCTGCTTTTTATGTTACAT 57.987 29.630 2.58 2.58 0.00 2.29
2147 3753 3.887716 AGCAAGTTGTCATTCTCTGCTTT 59.112 39.130 4.48 0.00 0.00 3.51
2156 3762 5.520376 AGTTAAAGCAGCAAGTTGTCATT 57.480 34.783 4.48 0.00 0.00 2.57
2282 3891 9.657121 GAATAGTTTGAATACTGAAAGCATAGC 57.343 33.333 0.00 0.00 37.60 2.97
2392 4012 0.172803 CTCACTACCTGTACCGCCAC 59.827 60.000 0.00 0.00 0.00 5.01
2425 4061 8.986477 AGTTAATTGCATCAGGAATGTTTTAC 57.014 30.769 0.00 0.00 35.82 2.01
2451 4087 8.400947 GTGTTATCTAAGTATCACGAGTAACCA 58.599 37.037 0.00 0.00 0.00 3.67
2509 4409 4.628333 CCTAAAAAGGAACGATGCTACGAA 59.372 41.667 9.70 0.00 37.03 3.85
2512 4412 3.687698 TGCCTAAAAAGGAACGATGCTAC 59.312 43.478 0.00 0.00 0.00 3.58
2529 4429 0.676782 GCTCTTTCGCCCTTTGCCTA 60.677 55.000 0.00 0.00 36.24 3.93
2625 4525 8.706322 AATCAATGGACTACCTTTAAACTTGT 57.294 30.769 0.00 0.00 37.04 3.16
2665 4567 3.701040 GCCACAATATGTGTCCTCCAAAT 59.299 43.478 9.42 0.00 46.45 2.32
2740 4644 4.382470 CCATCATCGGTCTCTTCAGTCTTT 60.382 45.833 0.00 0.00 0.00 2.52
2755 4659 1.951510 CGCAAATCCCCCATCATCG 59.048 57.895 0.00 0.00 0.00 3.84
2775 4679 3.769844 TCCTCTCCAAGTCCATCACTAAC 59.230 47.826 0.00 0.00 32.30 2.34
2882 4790 2.102252 CCTTGTAAACTTGCCAAAGCCA 59.898 45.455 0.00 0.00 36.84 4.75
3061 4973 2.492484 ACCTCTACTCAGCCTGTTAACG 59.508 50.000 0.26 0.00 0.00 3.18
3067 4979 1.680735 CTAGCACCTCTACTCAGCCTG 59.319 57.143 0.00 0.00 0.00 4.85
3083 4995 2.025636 TCTATTACCCCCTGCCTAGC 57.974 55.000 0.00 0.00 0.00 3.42
3103 5015 7.362401 GCAATCACAACTACTTCATTCCTGAAT 60.362 37.037 0.00 0.00 40.52 2.57
3309 5225 8.829746 TCAGAATCTGCAATAATAGTATGGGAT 58.170 33.333 5.18 0.00 0.00 3.85
3310 5226 8.206126 TCAGAATCTGCAATAATAGTATGGGA 57.794 34.615 5.18 0.00 0.00 4.37
3311 5227 8.853077 TTCAGAATCTGCAATAATAGTATGGG 57.147 34.615 5.18 0.00 0.00 4.00
3435 5353 3.826157 TGCTTGTTTTGAGTTCCCTATGG 59.174 43.478 0.00 0.00 0.00 2.74
3494 5412 6.363167 AGATTCTTGCCATTCCAAAATCAA 57.637 33.333 0.00 0.00 0.00 2.57
3504 5422 1.205417 CCGCCAAAGATTCTTGCCATT 59.795 47.619 0.00 0.00 0.00 3.16
3522 5440 1.159285 TTGCTTGTTGCTCATCTCCG 58.841 50.000 0.00 0.00 43.37 4.63
3681 5607 2.362077 GCCTTCCATTGCATATTCCGTT 59.638 45.455 0.00 0.00 0.00 4.44
3682 5608 1.956477 GCCTTCCATTGCATATTCCGT 59.044 47.619 0.00 0.00 0.00 4.69
3748 5674 5.546499 TCCTTAGACCACTTACAGTTTCCAT 59.454 40.000 0.00 0.00 0.00 3.41
3841 5767 4.943705 GTCAAGGCATTATGGAGACTGAAA 59.056 41.667 0.00 0.00 0.00 2.69
3842 5768 4.517285 GTCAAGGCATTATGGAGACTGAA 58.483 43.478 0.00 0.00 0.00 3.02
3843 5769 3.118261 GGTCAAGGCATTATGGAGACTGA 60.118 47.826 0.00 0.00 0.00 3.41
3846 5773 2.945668 GTGGTCAAGGCATTATGGAGAC 59.054 50.000 0.00 0.00 0.00 3.36
3848 5775 2.684881 GTGTGGTCAAGGCATTATGGAG 59.315 50.000 0.00 0.00 0.00 3.86
3852 5779 2.027192 AGTCGTGTGGTCAAGGCATTAT 60.027 45.455 0.00 0.00 30.57 1.28
3853 5780 1.346395 AGTCGTGTGGTCAAGGCATTA 59.654 47.619 0.00 0.00 30.57 1.90
3883 5822 7.093322 ACTCCATGTCTGAGCAAATAAAATC 57.907 36.000 0.00 0.00 32.98 2.17
3899 5840 3.312890 CTTCCCTCCATAGACTCCATGT 58.687 50.000 0.00 0.00 0.00 3.21
4015 5956 1.383109 TCTGGCATCCGGGTCATCT 60.383 57.895 0.00 0.00 0.00 2.90
4105 6046 9.785982 GCTACCTTATTCCTCTGAGAAAAATAT 57.214 33.333 6.17 0.00 0.00 1.28
4154 6098 3.018149 GAGTCTCCGTATCCACAGAGTT 58.982 50.000 0.00 0.00 32.04 3.01
4194 6138 4.039366 ACTCAAAAACTTCGAGAGCCTACT 59.961 41.667 0.00 0.00 0.00 2.57
4200 6144 4.735338 GGCAAAACTCAAAAACTTCGAGAG 59.265 41.667 0.00 0.00 0.00 3.20
4249 6193 3.631227 AGCTGAATCCTTTAGCAGATTGC 59.369 43.478 6.44 0.00 45.46 3.56
4254 6198 1.674962 GGCAGCTGAATCCTTTAGCAG 59.325 52.381 20.43 0.08 39.84 4.24
4267 6211 2.046023 TGATTCCGGTGGCAGCTG 60.046 61.111 15.48 10.11 0.00 4.24
4269 6213 2.359850 TGTGATTCCGGTGGCAGC 60.360 61.111 6.62 6.62 0.00 5.25
4279 6223 3.318017 AGAACTACAGTGCGTGTGATTC 58.682 45.455 1.85 5.65 40.69 2.52
4294 6238 4.701651 CCATGCCACATCAAAAGAGAACTA 59.298 41.667 0.00 0.00 0.00 2.24
4302 6246 2.388310 CATGCCATGCCACATCAAAA 57.612 45.000 0.00 0.00 0.00 2.44
4318 6262 7.481275 ACAACAAAATTTTCTGTAAGGCATG 57.519 32.000 11.68 0.00 0.00 4.06
4336 6282 9.653287 CTAGAGTGGAAAATACAGATACAACAA 57.347 33.333 0.00 0.00 0.00 2.83
4345 6291 9.482627 GAATCCATACTAGAGTGGAAAATACAG 57.517 37.037 19.62 0.00 46.78 2.74
4356 6302 9.523168 GTTATACTCCAGAATCCATACTAGAGT 57.477 37.037 0.00 0.00 38.30 3.24
4359 6305 9.303116 ACTGTTATACTCCAGAATCCATACTAG 57.697 37.037 0.00 0.00 32.93 2.57
4360 6306 9.656323 AACTGTTATACTCCAGAATCCATACTA 57.344 33.333 0.00 0.00 32.93 1.82
4364 6323 8.095452 AGAAACTGTTATACTCCAGAATCCAT 57.905 34.615 0.00 0.00 32.93 3.41
4395 6354 7.872881 TGACGTACAGCATGGTTTATTAAAAA 58.127 30.769 0.00 0.00 43.62 1.94
4396 6355 7.436430 TGACGTACAGCATGGTTTATTAAAA 57.564 32.000 0.00 0.00 43.62 1.52
4397 6356 7.334671 TCATGACGTACAGCATGGTTTATTAAA 59.665 33.333 19.14 1.17 43.62 1.52
4398 6357 6.819146 TCATGACGTACAGCATGGTTTATTAA 59.181 34.615 19.14 1.71 43.62 1.40
4399 6358 6.256975 GTCATGACGTACAGCATGGTTTATTA 59.743 38.462 10.69 2.26 43.62 0.98
4400 6359 5.064707 GTCATGACGTACAGCATGGTTTATT 59.935 40.000 10.69 0.00 43.62 1.40
4401 6360 4.570772 GTCATGACGTACAGCATGGTTTAT 59.429 41.667 10.69 0.00 43.62 1.40
4402 6361 3.930229 GTCATGACGTACAGCATGGTTTA 59.070 43.478 10.69 0.00 43.62 2.01
4403 6362 2.742053 GTCATGACGTACAGCATGGTTT 59.258 45.455 10.69 0.00 43.62 3.27
4404 6363 2.289382 TGTCATGACGTACAGCATGGTT 60.289 45.455 20.54 0.00 43.62 3.67
4405 6364 1.275010 TGTCATGACGTACAGCATGGT 59.725 47.619 20.54 0.00 43.62 3.55
4406 6365 2.008752 TGTCATGACGTACAGCATGG 57.991 50.000 20.54 6.58 43.62 3.66
4407 6366 2.995939 ACTTGTCATGACGTACAGCATG 59.004 45.455 20.54 15.30 42.41 4.06
4408 6367 3.319137 ACTTGTCATGACGTACAGCAT 57.681 42.857 20.54 0.00 0.00 3.79
4409 6368 2.812358 ACTTGTCATGACGTACAGCA 57.188 45.000 20.54 0.00 0.00 4.41
4410 6369 3.571571 TGTACTTGTCATGACGTACAGC 58.428 45.455 28.38 16.17 35.07 4.40
4411 6370 5.043189 TCTGTACTTGTCATGACGTACAG 57.957 43.478 37.32 37.32 46.18 2.74
4412 6371 5.441709 TTCTGTACTTGTCATGACGTACA 57.558 39.130 29.24 29.24 36.50 2.90
4413 6372 6.946229 ATTTCTGTACTTGTCATGACGTAC 57.054 37.500 25.28 25.28 32.44 3.67
4414 6373 7.956420 AAATTTCTGTACTTGTCATGACGTA 57.044 32.000 20.54 14.21 0.00 3.57
4415 6374 6.861065 AAATTTCTGTACTTGTCATGACGT 57.139 33.333 20.54 15.19 0.00 4.34
4416 6375 9.825972 AAATAAATTTCTGTACTTGTCATGACG 57.174 29.630 20.54 10.04 0.00 4.35
4511 6473 0.520404 CCACAACATCAGCACTCAGC 59.480 55.000 0.00 0.00 46.19 4.26
4512 6474 0.520404 GCCACAACATCAGCACTCAG 59.480 55.000 0.00 0.00 0.00 3.35
4513 6475 0.890542 GGCCACAACATCAGCACTCA 60.891 55.000 0.00 0.00 0.00 3.41
4514 6476 0.890542 TGGCCACAACATCAGCACTC 60.891 55.000 0.00 0.00 0.00 3.51
4515 6477 1.151221 TGGCCACAACATCAGCACT 59.849 52.632 0.00 0.00 0.00 4.40
4516 6478 1.286880 GTGGCCACAACATCAGCAC 59.713 57.895 31.23 0.00 0.00 4.40
4517 6479 1.902918 GGTGGCCACAACATCAGCA 60.903 57.895 35.78 0.00 33.38 4.41
4518 6480 1.604593 AGGTGGCCACAACATCAGC 60.605 57.895 35.78 16.64 36.52 4.26
4519 6481 0.250858 TCAGGTGGCCACAACATCAG 60.251 55.000 35.78 15.76 36.52 2.90
4520 6482 0.405198 ATCAGGTGGCCACAACATCA 59.595 50.000 35.78 14.19 36.52 3.07
4521 6483 2.418368 TATCAGGTGGCCACAACATC 57.582 50.000 35.78 18.89 36.52 3.06
4522 6484 2.658285 CATATCAGGTGGCCACAACAT 58.342 47.619 35.78 24.18 36.52 2.71
4523 6485 1.954733 GCATATCAGGTGGCCACAACA 60.955 52.381 35.78 19.27 36.52 3.33
4524 6486 0.740737 GCATATCAGGTGGCCACAAC 59.259 55.000 35.78 20.40 33.31 3.32
4525 6487 0.625316 AGCATATCAGGTGGCCACAA 59.375 50.000 35.78 21.28 0.00 3.33
4526 6488 0.625316 AAGCATATCAGGTGGCCACA 59.375 50.000 35.78 17.69 0.00 4.17
4527 6489 1.767759 AAAGCATATCAGGTGGCCAC 58.232 50.000 28.57 28.57 0.00 5.01
4528 6490 3.287222 GTTAAAGCATATCAGGTGGCCA 58.713 45.455 0.00 0.00 0.00 5.36
4529 6491 2.623416 GGTTAAAGCATATCAGGTGGCC 59.377 50.000 0.00 0.00 0.00 5.36
4530 6492 3.555966 AGGTTAAAGCATATCAGGTGGC 58.444 45.455 0.00 0.00 0.00 5.01
4531 6493 8.157476 AGTAATAGGTTAAAGCATATCAGGTGG 58.843 37.037 0.00 0.00 0.00 4.61
4532 6494 9.209175 GAGTAATAGGTTAAAGCATATCAGGTG 57.791 37.037 0.00 0.00 0.00 4.00
4533 6495 9.160412 AGAGTAATAGGTTAAAGCATATCAGGT 57.840 33.333 0.00 0.00 0.00 4.00
4536 6498 9.998106 GGAAGAGTAATAGGTTAAAGCATATCA 57.002 33.333 0.00 0.00 0.00 2.15
4539 6501 8.429641 CCAGGAAGAGTAATAGGTTAAAGCATA 58.570 37.037 0.00 0.00 0.00 3.14
4540 6502 7.283329 CCAGGAAGAGTAATAGGTTAAAGCAT 58.717 38.462 0.00 0.00 0.00 3.79
4541 6503 6.650120 CCAGGAAGAGTAATAGGTTAAAGCA 58.350 40.000 0.00 0.00 0.00 3.91
4542 6504 5.527951 GCCAGGAAGAGTAATAGGTTAAAGC 59.472 44.000 0.00 0.00 0.00 3.51
4543 6505 5.753921 CGCCAGGAAGAGTAATAGGTTAAAG 59.246 44.000 0.00 0.00 0.00 1.85
4544 6506 5.188359 ACGCCAGGAAGAGTAATAGGTTAAA 59.812 40.000 0.00 0.00 0.00 1.52
4545 6507 4.713321 ACGCCAGGAAGAGTAATAGGTTAA 59.287 41.667 0.00 0.00 0.00 2.01
4546 6508 4.284178 ACGCCAGGAAGAGTAATAGGTTA 58.716 43.478 0.00 0.00 0.00 2.85
4547 6509 3.105283 ACGCCAGGAAGAGTAATAGGTT 58.895 45.455 0.00 0.00 0.00 3.50
4548 6510 2.748388 ACGCCAGGAAGAGTAATAGGT 58.252 47.619 0.00 0.00 0.00 3.08
4549 6511 3.821421 AACGCCAGGAAGAGTAATAGG 57.179 47.619 0.00 0.00 0.00 2.57
4550 6512 6.750148 AGAATAACGCCAGGAAGAGTAATAG 58.250 40.000 0.00 0.00 0.00 1.73
4551 6513 6.726490 AGAATAACGCCAGGAAGAGTAATA 57.274 37.500 0.00 0.00 0.00 0.98
4552 6514 5.615925 AGAATAACGCCAGGAAGAGTAAT 57.384 39.130 0.00 0.00 0.00 1.89
4553 6515 5.046878 TCAAGAATAACGCCAGGAAGAGTAA 60.047 40.000 0.00 0.00 0.00 2.24
4554 6516 4.464951 TCAAGAATAACGCCAGGAAGAGTA 59.535 41.667 0.00 0.00 0.00 2.59
4555 6517 3.260884 TCAAGAATAACGCCAGGAAGAGT 59.739 43.478 0.00 0.00 0.00 3.24
4556 6518 3.861840 TCAAGAATAACGCCAGGAAGAG 58.138 45.455 0.00 0.00 0.00 2.85
4557 6519 3.973206 TCAAGAATAACGCCAGGAAGA 57.027 42.857 0.00 0.00 0.00 2.87
4558 6520 3.242870 GCATCAAGAATAACGCCAGGAAG 60.243 47.826 0.00 0.00 0.00 3.46
4559 6521 2.682856 GCATCAAGAATAACGCCAGGAA 59.317 45.455 0.00 0.00 0.00 3.36
4560 6522 2.092968 AGCATCAAGAATAACGCCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
4561 6523 2.292267 AGCATCAAGAATAACGCCAGG 58.708 47.619 0.00 0.00 0.00 4.45
4562 6524 4.153117 GGATAGCATCAAGAATAACGCCAG 59.847 45.833 0.00 0.00 0.00 4.85
4563 6525 4.065088 GGATAGCATCAAGAATAACGCCA 58.935 43.478 0.00 0.00 0.00 5.69
4564 6526 4.065088 TGGATAGCATCAAGAATAACGCC 58.935 43.478 0.00 0.00 0.00 5.68
4565 6527 5.409520 TCATGGATAGCATCAAGAATAACGC 59.590 40.000 0.00 0.00 0.00 4.84
4566 6528 7.606858 ATCATGGATAGCATCAAGAATAACG 57.393 36.000 0.00 0.00 0.00 3.18
4570 6532 9.397280 CTTGATATCATGGATAGCATCAAGAAT 57.603 33.333 17.38 0.00 40.92 2.40
4571 6533 8.380867 ACTTGATATCATGGATAGCATCAAGAA 58.619 33.333 23.68 4.95 40.92 2.52
4572 6534 7.914859 ACTTGATATCATGGATAGCATCAAGA 58.085 34.615 23.68 5.46 40.92 3.02
4573 6535 8.451748 CAACTTGATATCATGGATAGCATCAAG 58.548 37.037 19.53 19.14 42.38 3.02
4574 6536 7.940688 ACAACTTGATATCATGGATAGCATCAA 59.059 33.333 19.53 4.50 39.99 2.57
4575 6537 7.455891 ACAACTTGATATCATGGATAGCATCA 58.544 34.615 19.53 0.00 39.99 3.07
4576 6538 7.918536 ACAACTTGATATCATGGATAGCATC 57.081 36.000 19.53 0.00 39.99 3.91
4577 6539 9.445878 CTAACAACTTGATATCATGGATAGCAT 57.554 33.333 19.53 0.48 39.99 3.79
4578 6540 7.879677 CCTAACAACTTGATATCATGGATAGCA 59.120 37.037 19.53 0.42 38.83 3.49
4579 6541 7.335422 CCCTAACAACTTGATATCATGGATAGC 59.665 40.741 19.53 0.00 32.33 2.97
4580 6542 7.335422 GCCCTAACAACTTGATATCATGGATAG 59.665 40.741 19.53 10.73 0.00 2.08
4581 6543 7.168219 GCCCTAACAACTTGATATCATGGATA 58.832 38.462 19.53 7.58 0.00 2.59
4582 6544 6.006449 GCCCTAACAACTTGATATCATGGAT 58.994 40.000 19.53 8.03 0.00 3.41
4583 6545 5.104151 TGCCCTAACAACTTGATATCATGGA 60.104 40.000 19.53 0.06 0.00 3.41
4584 6546 5.132502 TGCCCTAACAACTTGATATCATGG 58.867 41.667 19.53 12.35 0.00 3.66
4585 6547 6.713903 AGATGCCCTAACAACTTGATATCATG 59.286 38.462 15.20 15.20 0.00 3.07
4586 6548 6.845908 AGATGCCCTAACAACTTGATATCAT 58.154 36.000 6.17 0.00 0.00 2.45
4587 6549 6.252599 AGATGCCCTAACAACTTGATATCA 57.747 37.500 0.00 0.00 0.00 2.15
4588 6550 5.703130 GGAGATGCCCTAACAACTTGATATC 59.297 44.000 0.00 0.00 0.00 1.63
4589 6551 5.132648 TGGAGATGCCCTAACAACTTGATAT 59.867 40.000 0.00 0.00 34.97 1.63
4590 6552 4.473196 TGGAGATGCCCTAACAACTTGATA 59.527 41.667 0.00 0.00 34.97 2.15
4591 6553 3.266772 TGGAGATGCCCTAACAACTTGAT 59.733 43.478 0.00 0.00 34.97 2.57
4592 6554 2.642311 TGGAGATGCCCTAACAACTTGA 59.358 45.455 0.00 0.00 34.97 3.02
4593 6555 3.012518 CTGGAGATGCCCTAACAACTTG 58.987 50.000 0.00 0.00 34.97 3.16
4594 6556 2.619074 GCTGGAGATGCCCTAACAACTT 60.619 50.000 0.00 0.00 34.97 2.66
4595 6557 1.065126 GCTGGAGATGCCCTAACAACT 60.065 52.381 0.00 0.00 34.97 3.16
4596 6558 1.383523 GCTGGAGATGCCCTAACAAC 58.616 55.000 0.00 0.00 34.97 3.32
4597 6559 0.255890 GGCTGGAGATGCCCTAACAA 59.744 55.000 0.00 0.00 44.32 2.83
4598 6560 1.915228 GGCTGGAGATGCCCTAACA 59.085 57.895 0.00 0.00 44.32 2.41
4729 6691 1.070445 CTGCAAAGTGGGCCAATTTCA 59.930 47.619 27.50 23.82 29.07 2.69
4774 6736 2.789409 GGCCTATTCTCGCCCATATT 57.211 50.000 0.00 0.00 39.39 1.28
4942 6904 3.003763 GAGGCTCAAGGGGGACGT 61.004 66.667 10.25 0.00 0.00 4.34
5062 7024 1.676529 TCCTCTAGCCGAAGTTGATCG 59.323 52.381 0.00 0.00 42.37 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.