Multiple sequence alignment - TraesCS3B01G533300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G533300 chr3B 100.000 2471 0 0 1 2471 773747036 773744566 0.000000e+00 4564.0
1 TraesCS3B01G533300 chr3B 85.940 1074 100 25 463 1500 773762962 773761904 0.000000e+00 1099.0
2 TraesCS3B01G533300 chr3B 90.694 634 53 2 868 1500 773897294 773897922 0.000000e+00 839.0
3 TraesCS3B01G533300 chr3B 79.830 352 55 9 526 873 773883356 773883695 2.460000e-60 243.0
4 TraesCS3B01G533300 chr3B 100.000 33 0 0 212 244 773882958 773882990 7.380000e-06 62.1
5 TraesCS3B01G533300 chr3A 87.628 1851 157 35 423 2215 714624730 714626566 0.000000e+00 2084.0
6 TraesCS3B01G533300 chr3A 92.244 1328 90 5 892 2217 714594287 714592971 0.000000e+00 1869.0
7 TraesCS3B01G533300 chr3A 86.102 1252 106 25 430 1640 714604133 714602909 0.000000e+00 1286.0
8 TraesCS3B01G533300 chr3A 92.105 228 15 2 2213 2438 714592632 714592858 3.970000e-83 318.0
9 TraesCS3B01G533300 chr3A 91.304 230 16 2 2211 2438 714626909 714626682 6.640000e-81 311.0
10 TraesCS3B01G533300 chr3A 97.368 76 2 0 100 175 714595497 714595422 1.990000e-26 130.0
11 TraesCS3B01G533300 chr3A 97.674 43 0 1 72 114 714595556 714595515 3.410000e-09 73.1
12 TraesCS3B01G533300 chr3D 93.288 1326 81 8 822 2141 579425722 579424399 0.000000e+00 1949.0
13 TraesCS3B01G533300 chr3D 89.789 901 70 8 614 1500 579583603 579584495 0.000000e+00 1134.0
14 TraesCS3B01G533300 chr3D 91.453 234 14 4 2211 2438 579397162 579397395 1.430000e-82 316.0
15 TraesCS3B01G533300 chr3D 88.760 258 23 5 673 928 579426009 579425756 6.640000e-81 311.0
16 TraesCS3B01G533300 chr3D 80.435 414 46 21 418 812 579398119 579397722 1.450000e-72 283.0
17 TraesCS3B01G533300 chr3D 81.818 242 25 9 427 657 579426229 579425996 4.200000e-43 185.0
18 TraesCS3B01G533300 chr4A 78.650 548 69 15 452 976 714667338 714667860 1.100000e-83 320.0
19 TraesCS3B01G533300 chr4B 77.555 548 75 19 452 976 430672236 430672758 1.120000e-73 287.0
20 TraesCS3B01G533300 chrUn 78.355 231 17 7 452 663 230759898 230760114 4.320000e-23 119.0
21 TraesCS3B01G533300 chrUn 96.364 55 2 0 922 976 230760127 230760181 9.410000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G533300 chr3B 773744566 773747036 2470 True 4564.0 4564 100.000000 1 2471 1 chr3B.!!$R1 2470
1 TraesCS3B01G533300 chr3B 773761904 773762962 1058 True 1099.0 1099 85.940000 463 1500 1 chr3B.!!$R2 1037
2 TraesCS3B01G533300 chr3B 773897294 773897922 628 False 839.0 839 90.694000 868 1500 1 chr3B.!!$F1 632
3 TraesCS3B01G533300 chr3A 714624730 714626566 1836 False 2084.0 2084 87.628000 423 2215 1 chr3A.!!$F2 1792
4 TraesCS3B01G533300 chr3A 714602909 714604133 1224 True 1286.0 1286 86.102000 430 1640 1 chr3A.!!$R1 1210
5 TraesCS3B01G533300 chr3A 714592971 714595556 2585 True 690.7 1869 95.762000 72 2217 3 chr3A.!!$R3 2145
6 TraesCS3B01G533300 chr3D 579583603 579584495 892 False 1134.0 1134 89.789000 614 1500 1 chr3D.!!$F2 886
7 TraesCS3B01G533300 chr3D 579424399 579426229 1830 True 815.0 1949 87.955333 427 2141 3 chr3D.!!$R2 1714
8 TraesCS3B01G533300 chr4A 714667338 714667860 522 False 320.0 320 78.650000 452 976 1 chr4A.!!$F1 524
9 TraesCS3B01G533300 chr4B 430672236 430672758 522 False 287.0 287 77.555000 452 976 1 chr4B.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.179045 GTGAGTGGTGGACTGCTTGT 60.179 55.0 0.0 0.0 33.83 3.16 F
31 32 0.179048 TGAGTGGTGGACTGCTTGTG 60.179 55.0 0.0 0.0 33.83 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1043 1702 0.460459 GGGAGTTAGCGTGAGAAGGC 60.46 60.0 0.00 0.0 0.00 4.35 R
1472 2131 1.039785 TGAGATCCTCCGAGGCACAG 61.04 60.0 9.87 0.0 34.61 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.428869 AAGCAAGAGAGGTGAGTGGT 58.571 50.000 0.00 0.00 0.00 4.16
20 21 0.683973 AGCAAGAGAGGTGAGTGGTG 59.316 55.000 0.00 0.00 0.00 4.17
21 22 0.321122 GCAAGAGAGGTGAGTGGTGG 60.321 60.000 0.00 0.00 0.00 4.61
22 23 1.342074 CAAGAGAGGTGAGTGGTGGA 58.658 55.000 0.00 0.00 0.00 4.02
23 24 1.001406 CAAGAGAGGTGAGTGGTGGAC 59.999 57.143 0.00 0.00 0.00 4.02
24 25 0.485099 AGAGAGGTGAGTGGTGGACT 59.515 55.000 0.00 0.00 37.76 3.85
25 26 0.605589 GAGAGGTGAGTGGTGGACTG 59.394 60.000 0.00 0.00 33.83 3.51
26 27 1.004440 GAGGTGAGTGGTGGACTGC 60.004 63.158 0.00 0.00 33.83 4.40
27 28 1.460305 AGGTGAGTGGTGGACTGCT 60.460 57.895 0.00 0.00 33.83 4.24
28 29 1.056700 AGGTGAGTGGTGGACTGCTT 61.057 55.000 0.00 0.00 33.83 3.91
29 30 0.886490 GGTGAGTGGTGGACTGCTTG 60.886 60.000 0.00 0.00 33.83 4.01
30 31 0.179045 GTGAGTGGTGGACTGCTTGT 60.179 55.000 0.00 0.00 33.83 3.16
31 32 0.179048 TGAGTGGTGGACTGCTTGTG 60.179 55.000 0.00 0.00 33.83 3.33
32 33 0.886490 GAGTGGTGGACTGCTTGTGG 60.886 60.000 0.00 0.00 33.83 4.17
33 34 2.203337 TGGTGGACTGCTTGTGGC 60.203 61.111 0.00 0.00 42.22 5.01
42 43 3.279116 GCTTGTGGCAGTGCGTGA 61.279 61.111 9.45 0.00 41.35 4.35
43 44 2.633657 CTTGTGGCAGTGCGTGAC 59.366 61.111 9.45 6.32 32.89 3.67
44 45 3.227372 CTTGTGGCAGTGCGTGACG 62.227 63.158 9.45 0.00 36.69 4.35
55 56 3.834373 CGTGACGGCGGCGTTTAG 61.834 66.667 37.69 25.60 0.00 1.85
56 57 3.484547 GTGACGGCGGCGTTTAGG 61.485 66.667 37.69 8.24 0.00 2.69
57 58 4.745751 TGACGGCGGCGTTTAGGG 62.746 66.667 37.69 7.41 0.00 3.53
86 87 1.000019 GGGGAGGTAGGTTTTGCCC 60.000 63.158 0.00 0.00 38.26 5.36
120 153 0.475044 TTGAACTGGGCCTAAACGGT 59.525 50.000 4.53 0.00 34.25 4.83
177 210 4.003788 CCCAGACACTCGGCCGTT 62.004 66.667 27.15 11.00 0.00 4.44
178 211 2.738521 CCAGACACTCGGCCGTTG 60.739 66.667 27.15 24.46 0.00 4.10
179 212 3.414700 CAGACACTCGGCCGTTGC 61.415 66.667 27.15 17.71 0.00 4.17
180 213 3.616721 AGACACTCGGCCGTTGCT 61.617 61.111 27.15 19.43 37.74 3.91
181 214 3.414700 GACACTCGGCCGTTGCTG 61.415 66.667 27.15 17.40 45.75 4.41
190 223 4.170062 CCGTTGCTGATGCGCCAG 62.170 66.667 4.18 7.18 43.34 4.85
191 224 4.170062 CGTTGCTGATGCGCCAGG 62.170 66.667 14.34 0.00 43.34 4.45
192 225 2.747460 GTTGCTGATGCGCCAGGA 60.747 61.111 14.34 9.48 43.34 3.86
193 226 2.437180 TTGCTGATGCGCCAGGAG 60.437 61.111 14.34 2.58 43.34 3.69
196 229 4.478371 CTGATGCGCCAGGAGCCA 62.478 66.667 13.34 3.29 38.78 4.75
197 230 4.478371 TGATGCGCCAGGAGCCAG 62.478 66.667 13.34 0.00 38.78 4.85
234 267 4.093291 CGCCAGCCCTTCAGCTCT 62.093 66.667 0.00 0.00 42.61 4.09
235 268 2.438075 GCCAGCCCTTCAGCTCTG 60.438 66.667 0.00 0.00 42.61 3.35
236 269 2.964310 GCCAGCCCTTCAGCTCTGA 61.964 63.158 0.00 0.00 42.61 3.27
237 270 1.681666 CCAGCCCTTCAGCTCTGAA 59.318 57.895 11.37 11.37 46.27 3.02
238 271 0.676151 CCAGCCCTTCAGCTCTGAAC 60.676 60.000 8.14 0.31 43.90 3.18
239 272 0.676151 CAGCCCTTCAGCTCTGAACC 60.676 60.000 8.14 1.37 43.90 3.62
240 273 1.377856 GCCCTTCAGCTCTGAACCC 60.378 63.158 8.14 0.00 43.90 4.11
241 274 1.846712 GCCCTTCAGCTCTGAACCCT 61.847 60.000 8.14 0.00 43.90 4.34
242 275 1.573108 CCCTTCAGCTCTGAACCCTA 58.427 55.000 8.14 0.00 43.90 3.53
243 276 1.208293 CCCTTCAGCTCTGAACCCTAC 59.792 57.143 8.14 0.00 43.90 3.18
244 277 2.183679 CCTTCAGCTCTGAACCCTACT 58.816 52.381 8.14 0.00 43.90 2.57
245 278 2.569404 CCTTCAGCTCTGAACCCTACTT 59.431 50.000 8.14 0.00 43.90 2.24
246 279 3.594134 CTTCAGCTCTGAACCCTACTTG 58.406 50.000 8.14 0.00 43.90 3.16
247 280 2.609747 TCAGCTCTGAACCCTACTTGT 58.390 47.619 0.00 0.00 36.53 3.16
248 281 2.563179 TCAGCTCTGAACCCTACTTGTC 59.437 50.000 0.00 0.00 36.53 3.18
249 282 2.564947 CAGCTCTGAACCCTACTTGTCT 59.435 50.000 0.00 0.00 0.00 3.41
250 283 2.829120 AGCTCTGAACCCTACTTGTCTC 59.171 50.000 0.00 0.00 0.00 3.36
251 284 2.563179 GCTCTGAACCCTACTTGTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
252 285 3.006967 GCTCTGAACCCTACTTGTCTCAA 59.993 47.826 0.00 0.00 0.00 3.02
253 286 4.503296 GCTCTGAACCCTACTTGTCTCAAA 60.503 45.833 0.00 0.00 0.00 2.69
254 287 5.611374 CTCTGAACCCTACTTGTCTCAAAA 58.389 41.667 0.00 0.00 0.00 2.44
255 288 5.996644 TCTGAACCCTACTTGTCTCAAAAA 58.003 37.500 0.00 0.00 0.00 1.94
314 491 7.234187 TCATTCGAATCGTAGAAATTGAAGG 57.766 36.000 7.92 0.00 43.58 3.46
319 513 8.520835 TCGAATCGTAGAAATTGAAGGATATG 57.479 34.615 1.52 0.00 43.58 1.78
335 529 6.879276 AGGATATGCATTGATTCAGTCTTG 57.121 37.500 3.54 0.00 0.00 3.02
337 531 7.512130 AGGATATGCATTGATTCAGTCTTGTA 58.488 34.615 3.54 0.00 0.00 2.41
338 532 7.443575 AGGATATGCATTGATTCAGTCTTGTAC 59.556 37.037 3.54 0.00 0.00 2.90
339 533 7.443575 GGATATGCATTGATTCAGTCTTGTACT 59.556 37.037 3.54 0.00 39.81 2.73
355 549 5.948162 TCTTGTACTGTTAGATTAGGTCGGT 59.052 40.000 0.00 0.00 0.00 4.69
374 568 4.081917 TCGGTGAGATGTTAAGTGTATGCA 60.082 41.667 0.00 0.00 0.00 3.96
399 593 8.939929 CACTGATTCAATGTTGTACTGTTAGAT 58.060 33.333 0.00 0.00 0.00 1.98
407 601 8.383619 CAATGTTGTACTGTTAGATTAGTCTGC 58.616 37.037 0.00 0.00 35.87 4.26
408 602 6.988522 TGTTGTACTGTTAGATTAGTCTGCA 58.011 36.000 0.00 0.00 35.87 4.41
411 605 5.419155 TGTACTGTTAGATTAGTCTGCAGCT 59.581 40.000 9.47 12.20 39.90 4.24
412 606 4.753233 ACTGTTAGATTAGTCTGCAGCTG 58.247 43.478 10.11 10.11 39.90 4.24
413 607 3.525537 TGTTAGATTAGTCTGCAGCTGC 58.474 45.455 31.89 31.89 42.50 5.25
414 608 3.196469 TGTTAGATTAGTCTGCAGCTGCT 59.804 43.478 36.61 20.81 42.66 4.24
416 610 3.451141 AGATTAGTCTGCAGCTGCTAC 57.549 47.619 36.61 31.32 42.66 3.58
417 611 2.762887 AGATTAGTCTGCAGCTGCTACA 59.237 45.455 36.61 20.19 42.66 2.74
418 612 3.196469 AGATTAGTCTGCAGCTGCTACAA 59.804 43.478 36.61 26.33 42.66 2.41
419 613 2.662006 TAGTCTGCAGCTGCTACAAG 57.338 50.000 36.61 25.86 42.66 3.16
420 614 0.683973 AGTCTGCAGCTGCTACAAGT 59.316 50.000 36.61 19.56 42.66 3.16
421 615 0.795085 GTCTGCAGCTGCTACAAGTG 59.205 55.000 36.61 18.03 42.66 3.16
422 616 0.952497 TCTGCAGCTGCTACAAGTGC 60.952 55.000 36.61 11.07 42.66 4.40
423 617 1.227913 TGCAGCTGCTACAAGTGCA 60.228 52.632 36.61 13.77 41.72 4.57
436 630 1.941294 CAAGTGCAGAGATGCAGGATC 59.059 52.381 2.62 0.00 46.32 3.36
461 655 5.049198 CAGTACACGTCTGGTTCTGTAACTA 60.049 44.000 0.00 0.00 35.81 2.24
509 711 6.082338 CCTGTTCTGAACTTCAATGAATTCG 58.918 40.000 20.18 1.47 0.00 3.34
514 716 5.346011 TCTGAACTTCAATGAATTCGAGTCG 59.654 40.000 6.09 6.09 0.00 4.18
515 717 3.999229 ACTTCAATGAATTCGAGTCGC 57.001 42.857 7.92 0.00 0.00 5.19
519 721 2.609002 TCAATGAATTCGAGTCGCCATG 59.391 45.455 7.92 0.25 0.00 3.66
521 723 1.358877 TGAATTCGAGTCGCCATGTG 58.641 50.000 7.92 0.00 0.00 3.21
523 725 1.061131 GAATTCGAGTCGCCATGTGTG 59.939 52.381 7.92 0.00 0.00 3.82
553 777 4.141959 CCAGTGTGTGGTTTCCTTGAAAAT 60.142 41.667 0.00 0.00 42.17 1.82
554 778 4.805192 CAGTGTGTGGTTTCCTTGAAAATG 59.195 41.667 0.00 0.00 33.14 2.32
562 787 0.958091 TCCTTGAAAATGTGCGTGGG 59.042 50.000 0.00 0.00 0.00 4.61
649 874 1.477700 GCCATGGTTTGCTGCAGAATA 59.522 47.619 20.43 0.00 0.00 1.75
668 893 7.816995 GCAGAATATGAAACCAACCAATTAACA 59.183 33.333 0.00 0.00 0.00 2.41
669 894 9.357652 CAGAATATGAAACCAACCAATTAACAG 57.642 33.333 0.00 0.00 0.00 3.16
700 925 3.601435 TGAAACCTCGTGTTCAACTCAA 58.399 40.909 0.00 0.00 35.67 3.02
790 1017 8.955002 TCGTTAAATCTCGATTTCTAATTCTCG 58.045 33.333 8.07 0.70 40.99 4.04
920 1570 9.109533 GCTTTTTGCTTAAATTTTCATCATGTG 57.890 29.630 0.00 0.00 38.95 3.21
938 1588 6.389091 TCATGTGTGATAAAAATGTGAAGCC 58.611 36.000 0.00 0.00 0.00 4.35
1039 1698 2.813754 GTGCACATCAAACTTCTGGCTA 59.186 45.455 13.17 0.00 0.00 3.93
1043 1702 2.009774 CATCAAACTTCTGGCTACCGG 58.990 52.381 0.00 0.00 0.00 5.28
1148 1807 1.469308 GGTTGTTGTTTCACGTGACCA 59.531 47.619 19.90 15.20 0.00 4.02
1151 1810 2.360844 TGTTGTTTCACGTGACCACAT 58.639 42.857 23.76 0.00 0.00 3.21
1207 1866 4.069869 GCTGTGTGCCATGTGTCT 57.930 55.556 0.00 0.00 35.15 3.41
1380 2039 1.819903 GCTCCTAGAGACGTGGTTCTT 59.180 52.381 0.00 0.00 0.00 2.52
1458 2117 5.587388 AGGAATGTTATGATTTGCCACTG 57.413 39.130 0.00 0.00 0.00 3.66
1472 2131 1.584380 CCACTGCCTTCTGCTTGAGC 61.584 60.000 0.00 0.00 42.00 4.26
1502 2161 3.551863 CGGAGGATCTCATGCTCTGTAAC 60.552 52.174 5.84 0.00 45.70 2.50
1674 2333 6.555152 AGTTTGCAACTGCCTTATAAGGTCC 61.555 44.000 28.31 15.77 40.40 4.46
1913 2572 1.250328 TTCCAGCTGCACATGAAAGG 58.750 50.000 8.66 0.00 0.00 3.11
1987 2648 6.458342 GCCAATGTATAGGTGCAACTTCTTAC 60.458 42.308 10.94 10.71 36.74 2.34
2031 2693 9.144298 TGGATAGAAATAGGAAGAAAGATACGT 57.856 33.333 0.00 0.00 0.00 3.57
2167 2830 4.152647 AGTGAGAGAGTCCACATGTAACA 58.847 43.478 0.00 0.00 35.84 2.41
2188 2851 2.439507 AGGCATCATGGTTATCGAAGGT 59.560 45.455 0.00 0.00 0.00 3.50
2189 2852 3.646162 AGGCATCATGGTTATCGAAGGTA 59.354 43.478 0.00 0.00 0.00 3.08
2190 2853 3.746492 GGCATCATGGTTATCGAAGGTAC 59.254 47.826 0.00 0.00 0.00 3.34
2191 2854 4.377021 GCATCATGGTTATCGAAGGTACA 58.623 43.478 0.00 0.00 0.00 2.90
2192 2855 4.814234 GCATCATGGTTATCGAAGGTACAA 59.186 41.667 0.00 0.00 0.00 2.41
2217 2880 3.673543 ACACCTTGAAACCCCAAGTTA 57.326 42.857 0.00 0.00 41.34 2.24
2218 2881 3.562182 ACACCTTGAAACCCCAAGTTAG 58.438 45.455 0.00 0.00 41.34 2.34
2219 2882 3.203487 ACACCTTGAAACCCCAAGTTAGA 59.797 43.478 0.00 0.00 41.34 2.10
2220 2883 4.141018 ACACCTTGAAACCCCAAGTTAGAT 60.141 41.667 0.00 0.00 41.34 1.98
2221 2884 4.832823 CACCTTGAAACCCCAAGTTAGATT 59.167 41.667 0.00 0.00 41.34 2.40
2222 2885 5.048013 CACCTTGAAACCCCAAGTTAGATTC 60.048 44.000 0.00 0.00 41.34 2.52
2223 2886 5.076873 CCTTGAAACCCCAAGTTAGATTCA 58.923 41.667 0.00 0.00 41.34 2.57
2224 2887 5.183904 CCTTGAAACCCCAAGTTAGATTCAG 59.816 44.000 0.00 0.00 41.34 3.02
2225 2888 5.576563 TGAAACCCCAAGTTAGATTCAGA 57.423 39.130 0.00 0.00 37.88 3.27
2226 2889 6.139679 TGAAACCCCAAGTTAGATTCAGAT 57.860 37.500 0.00 0.00 37.88 2.90
2227 2890 5.945784 TGAAACCCCAAGTTAGATTCAGATG 59.054 40.000 0.00 0.00 37.88 2.90
2228 2891 5.779241 AACCCCAAGTTAGATTCAGATGA 57.221 39.130 0.00 0.00 36.74 2.92
2229 2892 5.365021 ACCCCAAGTTAGATTCAGATGAG 57.635 43.478 0.00 0.00 0.00 2.90
2230 2893 4.133078 CCCCAAGTTAGATTCAGATGAGC 58.867 47.826 0.00 0.00 0.00 4.26
2231 2894 4.141528 CCCCAAGTTAGATTCAGATGAGCT 60.142 45.833 0.00 0.00 0.00 4.09
2232 2895 4.815308 CCCAAGTTAGATTCAGATGAGCTG 59.185 45.833 0.00 0.00 46.31 4.24
2251 2914 9.872721 ATGAGCTGATTATGTTATGTATCTCTG 57.127 33.333 0.00 0.00 0.00 3.35
2252 2915 8.309656 TGAGCTGATTATGTTATGTATCTCTGG 58.690 37.037 0.00 0.00 0.00 3.86
2253 2916 8.200024 AGCTGATTATGTTATGTATCTCTGGT 57.800 34.615 0.00 0.00 0.00 4.00
2254 2917 8.093307 AGCTGATTATGTTATGTATCTCTGGTG 58.907 37.037 0.00 0.00 0.00 4.17
2255 2918 8.090831 GCTGATTATGTTATGTATCTCTGGTGA 58.909 37.037 0.00 0.00 0.00 4.02
2285 2948 9.930693 TTTACATTTTAGTTCCTTTTGTGTTGT 57.069 25.926 0.00 0.00 0.00 3.32
2286 2949 9.930693 TTACATTTTAGTTCCTTTTGTGTTGTT 57.069 25.926 0.00 0.00 0.00 2.83
2287 2950 8.250538 ACATTTTAGTTCCTTTTGTGTTGTTG 57.749 30.769 0.00 0.00 0.00 3.33
2288 2951 6.713792 TTTTAGTTCCTTTTGTGTTGTTGC 57.286 33.333 0.00 0.00 0.00 4.17
2289 2952 3.245518 AGTTCCTTTTGTGTTGTTGCC 57.754 42.857 0.00 0.00 0.00 4.52
2290 2953 2.831526 AGTTCCTTTTGTGTTGTTGCCT 59.168 40.909 0.00 0.00 0.00 4.75
2291 2954 3.119137 AGTTCCTTTTGTGTTGTTGCCTC 60.119 43.478 0.00 0.00 0.00 4.70
2292 2955 1.754226 TCCTTTTGTGTTGTTGCCTCC 59.246 47.619 0.00 0.00 0.00 4.30
2293 2956 1.480137 CCTTTTGTGTTGTTGCCTCCA 59.520 47.619 0.00 0.00 0.00 3.86
2294 2957 2.093764 CCTTTTGTGTTGTTGCCTCCAA 60.094 45.455 0.00 0.00 0.00 3.53
2295 2958 3.432046 CCTTTTGTGTTGTTGCCTCCAAT 60.432 43.478 0.00 0.00 32.75 3.16
2296 2959 4.202202 CCTTTTGTGTTGTTGCCTCCAATA 60.202 41.667 0.00 0.00 32.75 1.90
2297 2960 5.344743 TTTTGTGTTGTTGCCTCCAATAA 57.655 34.783 0.00 0.00 32.75 1.40
2298 2961 4.582701 TTGTGTTGTTGCCTCCAATAAG 57.417 40.909 0.00 0.00 33.53 1.73
2299 2962 3.826524 TGTGTTGTTGCCTCCAATAAGA 58.173 40.909 0.00 0.00 33.53 2.10
2300 2963 4.406456 TGTGTTGTTGCCTCCAATAAGAT 58.594 39.130 0.00 0.00 33.53 2.40
2301 2964 5.565509 TGTGTTGTTGCCTCCAATAAGATA 58.434 37.500 0.00 0.00 33.53 1.98
2302 2965 6.186957 TGTGTTGTTGCCTCCAATAAGATAT 58.813 36.000 0.00 0.00 33.53 1.63
2303 2966 6.095300 TGTGTTGTTGCCTCCAATAAGATATG 59.905 38.462 0.00 0.00 33.53 1.78
2304 2967 6.318648 GTGTTGTTGCCTCCAATAAGATATGA 59.681 38.462 0.00 0.00 33.53 2.15
2305 2968 6.543465 TGTTGTTGCCTCCAATAAGATATGAG 59.457 38.462 0.00 0.00 33.53 2.90
2306 2969 5.624159 TGTTGCCTCCAATAAGATATGAGG 58.376 41.667 0.00 0.00 44.38 3.86
2307 2970 5.369404 TGTTGCCTCCAATAAGATATGAGGA 59.631 40.000 8.00 0.00 44.34 3.71
2308 2971 6.126507 TGTTGCCTCCAATAAGATATGAGGAA 60.127 38.462 8.00 0.00 44.34 3.36
2309 2972 5.869579 TGCCTCCAATAAGATATGAGGAAC 58.130 41.667 8.00 0.00 44.34 3.62
2310 2973 5.608437 TGCCTCCAATAAGATATGAGGAACT 59.392 40.000 8.00 0.00 44.34 3.01
2311 2974 6.787458 TGCCTCCAATAAGATATGAGGAACTA 59.213 38.462 8.00 0.00 44.34 2.24
2312 2975 7.459125 TGCCTCCAATAAGATATGAGGAACTAT 59.541 37.037 8.00 0.00 44.34 2.12
2313 2976 8.982723 GCCTCCAATAAGATATGAGGAACTATA 58.017 37.037 8.00 0.00 44.34 1.31
2322 2985 8.719645 AGATATGAGGAACTATAACTTGAGCT 57.280 34.615 0.00 0.00 41.55 4.09
2323 2986 8.584157 AGATATGAGGAACTATAACTTGAGCTG 58.416 37.037 0.00 0.00 41.55 4.24
2324 2987 4.759782 TGAGGAACTATAACTTGAGCTGC 58.240 43.478 0.00 0.00 41.55 5.25
2325 2988 4.467795 TGAGGAACTATAACTTGAGCTGCT 59.532 41.667 0.00 0.00 41.55 4.24
2326 2989 5.046304 TGAGGAACTATAACTTGAGCTGCTT 60.046 40.000 2.53 0.00 41.55 3.91
2327 2990 5.810095 AGGAACTATAACTTGAGCTGCTTT 58.190 37.500 2.53 0.00 36.02 3.51
2328 2991 6.947464 AGGAACTATAACTTGAGCTGCTTTA 58.053 36.000 2.53 0.00 36.02 1.85
2329 2992 7.044798 AGGAACTATAACTTGAGCTGCTTTAG 58.955 38.462 2.53 7.01 36.02 1.85
2330 2993 7.042335 GGAACTATAACTTGAGCTGCTTTAGA 58.958 38.462 15.87 3.26 0.00 2.10
2331 2994 7.713073 GGAACTATAACTTGAGCTGCTTTAGAT 59.287 37.037 15.87 8.75 0.00 1.98
2332 2995 8.430801 AACTATAACTTGAGCTGCTTTAGATG 57.569 34.615 15.87 2.82 0.00 2.90
2333 2996 7.786030 ACTATAACTTGAGCTGCTTTAGATGA 58.214 34.615 15.87 4.30 0.00 2.92
2334 2997 8.260818 ACTATAACTTGAGCTGCTTTAGATGAA 58.739 33.333 15.87 2.62 0.00 2.57
2335 2998 9.270640 CTATAACTTGAGCTGCTTTAGATGAAT 57.729 33.333 15.87 7.90 0.00 2.57
2337 3000 9.790344 ATAACTTGAGCTGCTTTAGATGAATAT 57.210 29.630 15.87 6.27 0.00 1.28
2338 3001 8.517062 AACTTGAGCTGCTTTAGATGAATATT 57.483 30.769 15.87 0.00 0.00 1.28
2339 3002 8.152309 ACTTGAGCTGCTTTAGATGAATATTC 57.848 34.615 15.87 8.60 0.00 1.75
2340 3003 7.772292 ACTTGAGCTGCTTTAGATGAATATTCA 59.228 33.333 20.07 20.07 42.14 2.57
2341 3004 8.510243 TTGAGCTGCTTTAGATGAATATTCAA 57.490 30.769 21.50 3.23 41.13 2.69
2342 3005 8.151141 TGAGCTGCTTTAGATGAATATTCAAG 57.849 34.615 21.50 14.54 41.13 3.02
2343 3006 7.228108 TGAGCTGCTTTAGATGAATATTCAAGG 59.772 37.037 21.50 7.34 41.13 3.61
2344 3007 6.016443 AGCTGCTTTAGATGAATATTCAAGGC 60.016 38.462 21.50 16.40 41.13 4.35
2345 3008 6.639632 TGCTTTAGATGAATATTCAAGGCC 57.360 37.500 21.50 11.19 41.13 5.19
2346 3009 6.128486 TGCTTTAGATGAATATTCAAGGCCA 58.872 36.000 21.50 9.91 41.13 5.36
2347 3010 6.039717 TGCTTTAGATGAATATTCAAGGCCAC 59.960 38.462 21.50 9.71 41.13 5.01
2348 3011 6.264067 GCTTTAGATGAATATTCAAGGCCACT 59.736 38.462 21.50 14.76 41.13 4.00
2349 3012 7.521261 GCTTTAGATGAATATTCAAGGCCACTC 60.521 40.741 21.50 12.51 41.13 3.51
2350 3013 5.378230 AGATGAATATTCAAGGCCACTCA 57.622 39.130 21.50 0.00 41.13 3.41
2351 3014 5.128919 AGATGAATATTCAAGGCCACTCAC 58.871 41.667 21.50 4.52 41.13 3.51
2352 3015 4.574674 TGAATATTCAAGGCCACTCACT 57.425 40.909 15.82 0.00 33.55 3.41
2353 3016 4.264253 TGAATATTCAAGGCCACTCACTG 58.736 43.478 15.82 0.00 33.55 3.66
2354 3017 4.019411 TGAATATTCAAGGCCACTCACTGA 60.019 41.667 15.82 0.00 33.55 3.41
2355 3018 4.785346 ATATTCAAGGCCACTCACTGAT 57.215 40.909 5.01 0.00 0.00 2.90
2356 3019 5.894298 ATATTCAAGGCCACTCACTGATA 57.106 39.130 5.01 0.00 0.00 2.15
2357 3020 4.574674 ATTCAAGGCCACTCACTGATAA 57.425 40.909 5.01 0.00 0.00 1.75
2358 3021 4.574674 TTCAAGGCCACTCACTGATAAT 57.425 40.909 5.01 0.00 0.00 1.28
2359 3022 4.574674 TCAAGGCCACTCACTGATAATT 57.425 40.909 5.01 0.00 0.00 1.40
2360 3023 4.517285 TCAAGGCCACTCACTGATAATTC 58.483 43.478 5.01 0.00 0.00 2.17
2361 3024 3.185246 AGGCCACTCACTGATAATTCG 57.815 47.619 5.01 0.00 0.00 3.34
2362 3025 2.501723 AGGCCACTCACTGATAATTCGT 59.498 45.455 5.01 0.00 0.00 3.85
2363 3026 3.055094 AGGCCACTCACTGATAATTCGTT 60.055 43.478 5.01 0.00 0.00 3.85
2364 3027 3.063997 GGCCACTCACTGATAATTCGTTG 59.936 47.826 0.00 0.00 0.00 4.10
2365 3028 3.684788 GCCACTCACTGATAATTCGTTGT 59.315 43.478 0.00 0.00 0.00 3.32
2366 3029 4.154195 GCCACTCACTGATAATTCGTTGTT 59.846 41.667 0.00 0.00 0.00 2.83
2367 3030 5.621422 CCACTCACTGATAATTCGTTGTTG 58.379 41.667 0.00 0.00 0.00 3.33
2368 3031 5.408299 CCACTCACTGATAATTCGTTGTTGA 59.592 40.000 0.00 0.00 0.00 3.18
2369 3032 6.073276 CCACTCACTGATAATTCGTTGTTGAA 60.073 38.462 0.00 0.00 0.00 2.69
2370 3033 7.011773 CACTCACTGATAATTCGTTGTTGAAG 58.988 38.462 0.00 0.00 0.00 3.02
2371 3034 6.706270 ACTCACTGATAATTCGTTGTTGAAGT 59.294 34.615 0.00 0.00 0.00 3.01
2372 3035 7.095607 ACTCACTGATAATTCGTTGTTGAAGTC 60.096 37.037 0.00 0.00 0.00 3.01
2373 3036 6.704050 TCACTGATAATTCGTTGTTGAAGTCA 59.296 34.615 0.00 0.00 0.00 3.41
2374 3037 7.225734 TCACTGATAATTCGTTGTTGAAGTCAA 59.774 33.333 0.00 0.00 0.00 3.18
2375 3038 7.855409 CACTGATAATTCGTTGTTGAAGTCAAA 59.145 33.333 0.00 0.00 37.63 2.69
2376 3039 8.402472 ACTGATAATTCGTTGTTGAAGTCAAAA 58.598 29.630 0.00 0.00 37.63 2.44
2377 3040 8.555166 TGATAATTCGTTGTTGAAGTCAAAAC 57.445 30.769 0.00 3.02 37.63 2.43
2378 3041 7.646130 TGATAATTCGTTGTTGAAGTCAAAACC 59.354 33.333 0.00 0.00 37.63 3.27
2379 3042 5.576447 ATTCGTTGTTGAAGTCAAAACCT 57.424 34.783 0.00 0.00 37.63 3.50
2380 3043 4.349663 TCGTTGTTGAAGTCAAAACCTG 57.650 40.909 0.00 0.00 37.63 4.00
2381 3044 3.127895 TCGTTGTTGAAGTCAAAACCTGG 59.872 43.478 0.00 0.00 37.63 4.45
2382 3045 3.127895 CGTTGTTGAAGTCAAAACCTGGA 59.872 43.478 0.00 0.00 37.63 3.86
2383 3046 4.421058 GTTGTTGAAGTCAAAACCTGGAC 58.579 43.478 0.00 0.00 37.63 4.02
2384 3047 3.691575 TGTTGAAGTCAAAACCTGGACA 58.308 40.909 0.00 0.00 37.63 4.02
2385 3048 4.277476 TGTTGAAGTCAAAACCTGGACAT 58.723 39.130 0.00 0.00 37.63 3.06
2386 3049 4.709397 TGTTGAAGTCAAAACCTGGACATT 59.291 37.500 0.00 0.00 37.63 2.71
2387 3050 5.186797 TGTTGAAGTCAAAACCTGGACATTT 59.813 36.000 0.00 0.00 37.63 2.32
2388 3051 5.514274 TGAAGTCAAAACCTGGACATTTC 57.486 39.130 0.00 0.00 36.50 2.17
2389 3052 4.340950 TGAAGTCAAAACCTGGACATTTCC 59.659 41.667 0.00 0.00 43.19 3.13
2390 3053 4.184649 AGTCAAAACCTGGACATTTCCT 57.815 40.909 0.00 0.00 43.31 3.36
2391 3054 4.145052 AGTCAAAACCTGGACATTTCCTC 58.855 43.478 0.00 0.00 43.31 3.71
2392 3055 3.255888 GTCAAAACCTGGACATTTCCTCC 59.744 47.826 0.00 0.00 43.31 4.30
2393 3056 3.140144 TCAAAACCTGGACATTTCCTCCT 59.860 43.478 0.00 0.00 43.31 3.69
2394 3057 4.352595 TCAAAACCTGGACATTTCCTCCTA 59.647 41.667 0.00 0.00 43.31 2.94
2395 3058 5.015178 TCAAAACCTGGACATTTCCTCCTAT 59.985 40.000 0.00 0.00 43.31 2.57
2396 3059 4.779993 AACCTGGACATTTCCTCCTATC 57.220 45.455 0.00 0.00 43.31 2.08
2397 3060 3.736094 ACCTGGACATTTCCTCCTATCA 58.264 45.455 0.00 0.00 43.31 2.15
2398 3061 4.310740 ACCTGGACATTTCCTCCTATCAT 58.689 43.478 0.00 0.00 43.31 2.45
2399 3062 4.728860 ACCTGGACATTTCCTCCTATCATT 59.271 41.667 0.00 0.00 43.31 2.57
2400 3063 5.194537 ACCTGGACATTTCCTCCTATCATTT 59.805 40.000 0.00 0.00 43.31 2.32
2401 3064 5.767168 CCTGGACATTTCCTCCTATCATTTC 59.233 44.000 0.00 0.00 43.31 2.17
2402 3065 6.325993 TGGACATTTCCTCCTATCATTTCA 57.674 37.500 0.00 0.00 43.31 2.69
2403 3066 6.914665 TGGACATTTCCTCCTATCATTTCAT 58.085 36.000 0.00 0.00 43.31 2.57
2404 3067 7.356680 TGGACATTTCCTCCTATCATTTCATT 58.643 34.615 0.00 0.00 43.31 2.57
2405 3068 7.503566 TGGACATTTCCTCCTATCATTTCATTC 59.496 37.037 0.00 0.00 43.31 2.67
2406 3069 7.503566 GGACATTTCCTCCTATCATTTCATTCA 59.496 37.037 0.00 0.00 39.13 2.57
2407 3070 8.230472 ACATTTCCTCCTATCATTTCATTCAC 57.770 34.615 0.00 0.00 0.00 3.18
2408 3071 7.835682 ACATTTCCTCCTATCATTTCATTCACA 59.164 33.333 0.00 0.00 0.00 3.58
2409 3072 8.689061 CATTTCCTCCTATCATTTCATTCACAA 58.311 33.333 0.00 0.00 0.00 3.33
2410 3073 8.648698 TTTCCTCCTATCATTTCATTCACAAA 57.351 30.769 0.00 0.00 0.00 2.83
2411 3074 8.827832 TTCCTCCTATCATTTCATTCACAAAT 57.172 30.769 0.00 0.00 0.00 2.32
2412 3075 9.919416 TTCCTCCTATCATTTCATTCACAAATA 57.081 29.630 0.00 0.00 0.00 1.40
2422 3085 9.787532 CATTTCATTCACAAATATCTAAACGGT 57.212 29.630 0.00 0.00 0.00 4.83
2423 3086 9.787532 ATTTCATTCACAAATATCTAAACGGTG 57.212 29.630 0.00 0.00 0.00 4.94
2424 3087 7.915293 TCATTCACAAATATCTAAACGGTGT 57.085 32.000 0.00 0.00 0.00 4.16
2425 3088 8.330466 TCATTCACAAATATCTAAACGGTGTT 57.670 30.769 0.00 0.00 0.00 3.32
2426 3089 8.788806 TCATTCACAAATATCTAAACGGTGTTT 58.211 29.630 0.22 0.22 0.00 2.83
2427 3090 9.405587 CATTCACAAATATCTAAACGGTGTTTT 57.594 29.630 0.00 0.00 0.00 2.43
2428 3091 8.789881 TTCACAAATATCTAAACGGTGTTTTG 57.210 30.769 0.00 0.00 0.00 2.44
2429 3092 8.155821 TCACAAATATCTAAACGGTGTTTTGA 57.844 30.769 8.54 8.54 0.00 2.69
2430 3093 8.071368 TCACAAATATCTAAACGGTGTTTTGAC 58.929 33.333 8.33 0.00 0.00 3.18
2431 3094 8.073768 CACAAATATCTAAACGGTGTTTTGACT 58.926 33.333 8.33 2.95 0.00 3.41
2432 3095 8.073768 ACAAATATCTAAACGGTGTTTTGACTG 58.926 33.333 8.33 6.95 0.00 3.51
2433 3096 7.739498 AATATCTAAACGGTGTTTTGACTGT 57.261 32.000 8.33 0.00 37.01 3.55
2434 3097 7.739498 ATATCTAAACGGTGTTTTGACTGTT 57.261 32.000 8.33 0.00 45.51 3.16
2439 3102 5.373981 AACGGTGTTTTGACTGTTTACAA 57.626 34.783 0.00 0.00 41.73 2.41
2440 3103 5.373981 ACGGTGTTTTGACTGTTTACAAA 57.626 34.783 0.00 0.00 30.92 2.83
2441 3104 5.395642 ACGGTGTTTTGACTGTTTACAAAG 58.604 37.500 0.00 0.00 37.32 2.77
2442 3105 4.796312 CGGTGTTTTGACTGTTTACAAAGG 59.204 41.667 0.00 0.00 37.32 3.11
2443 3106 5.620429 CGGTGTTTTGACTGTTTACAAAGGT 60.620 40.000 0.00 0.00 37.32 3.50
2444 3107 6.403418 CGGTGTTTTGACTGTTTACAAAGGTA 60.403 38.462 0.00 0.00 37.32 3.08
2445 3108 6.970613 GGTGTTTTGACTGTTTACAAAGGTAG 59.029 38.462 0.00 0.00 37.32 3.18
2446 3109 6.471198 GTGTTTTGACTGTTTACAAAGGTAGC 59.529 38.462 0.00 0.00 37.32 3.58
2447 3110 5.412526 TTTGACTGTTTACAAAGGTAGCG 57.587 39.130 0.00 0.00 33.15 4.26
2448 3111 3.395639 TGACTGTTTACAAAGGTAGCGG 58.604 45.455 0.00 0.00 0.00 5.52
2449 3112 3.069872 TGACTGTTTACAAAGGTAGCGGA 59.930 43.478 0.00 0.00 0.00 5.54
2450 3113 3.396560 ACTGTTTACAAAGGTAGCGGAC 58.603 45.455 0.00 0.00 0.00 4.79
2451 3114 3.181463 ACTGTTTACAAAGGTAGCGGACA 60.181 43.478 0.00 0.00 0.00 4.02
2452 3115 3.806380 TGTTTACAAAGGTAGCGGACAA 58.194 40.909 0.00 0.00 0.00 3.18
2453 3116 4.197750 TGTTTACAAAGGTAGCGGACAAA 58.802 39.130 0.00 0.00 0.00 2.83
2454 3117 4.273969 TGTTTACAAAGGTAGCGGACAAAG 59.726 41.667 0.00 0.00 0.00 2.77
2455 3118 1.892209 ACAAAGGTAGCGGACAAAGG 58.108 50.000 0.00 0.00 0.00 3.11
2456 3119 1.142262 ACAAAGGTAGCGGACAAAGGT 59.858 47.619 0.00 0.00 0.00 3.50
2457 3120 2.369532 ACAAAGGTAGCGGACAAAGGTA 59.630 45.455 0.00 0.00 0.00 3.08
2458 3121 3.000727 CAAAGGTAGCGGACAAAGGTAG 58.999 50.000 0.00 0.00 0.00 3.18
2459 3122 1.934410 AGGTAGCGGACAAAGGTAGT 58.066 50.000 0.00 0.00 0.00 2.73
2460 3123 1.549170 AGGTAGCGGACAAAGGTAGTG 59.451 52.381 0.00 0.00 0.00 2.74
2461 3124 1.405121 GGTAGCGGACAAAGGTAGTGG 60.405 57.143 0.00 0.00 0.00 4.00
2462 3125 1.547372 GTAGCGGACAAAGGTAGTGGA 59.453 52.381 0.00 0.00 0.00 4.02
2463 3126 0.608640 AGCGGACAAAGGTAGTGGAG 59.391 55.000 0.00 0.00 0.00 3.86
2464 3127 0.606604 GCGGACAAAGGTAGTGGAGA 59.393 55.000 0.00 0.00 0.00 3.71
2465 3128 1.207329 GCGGACAAAGGTAGTGGAGAT 59.793 52.381 0.00 0.00 0.00 2.75
2466 3129 2.893637 CGGACAAAGGTAGTGGAGATG 58.106 52.381 0.00 0.00 0.00 2.90
2467 3130 2.496070 CGGACAAAGGTAGTGGAGATGA 59.504 50.000 0.00 0.00 0.00 2.92
2468 3131 3.429547 CGGACAAAGGTAGTGGAGATGAG 60.430 52.174 0.00 0.00 0.00 2.90
2469 3132 3.769844 GGACAAAGGTAGTGGAGATGAGA 59.230 47.826 0.00 0.00 0.00 3.27
2470 3133 4.407296 GGACAAAGGTAGTGGAGATGAGAT 59.593 45.833 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.071385 CACCACTCACCTCTCTTGCTT 59.929 52.381 0.00 0.00 0.00 3.91
3 4 1.001406 GTCCACCACTCACCTCTCTTG 59.999 57.143 0.00 0.00 0.00 3.02
5 6 0.485099 AGTCCACCACTCACCTCTCT 59.515 55.000 0.00 0.00 0.00 3.10
6 7 0.605589 CAGTCCACCACTCACCTCTC 59.394 60.000 0.00 0.00 30.26 3.20
7 8 1.476007 GCAGTCCACCACTCACCTCT 61.476 60.000 0.00 0.00 30.26 3.69
8 9 1.004440 GCAGTCCACCACTCACCTC 60.004 63.158 0.00 0.00 30.26 3.85
9 10 1.056700 AAGCAGTCCACCACTCACCT 61.057 55.000 0.00 0.00 30.26 4.00
10 11 0.886490 CAAGCAGTCCACCACTCACC 60.886 60.000 0.00 0.00 30.26 4.02
11 12 0.179045 ACAAGCAGTCCACCACTCAC 60.179 55.000 0.00 0.00 30.26 3.51
12 13 0.179048 CACAAGCAGTCCACCACTCA 60.179 55.000 0.00 0.00 30.26 3.41
13 14 0.886490 CCACAAGCAGTCCACCACTC 60.886 60.000 0.00 0.00 30.26 3.51
14 15 1.149174 CCACAAGCAGTCCACCACT 59.851 57.895 0.00 0.00 34.67 4.00
15 16 2.555547 GCCACAAGCAGTCCACCAC 61.556 63.158 0.00 0.00 42.97 4.16
16 17 2.203337 GCCACAAGCAGTCCACCA 60.203 61.111 0.00 0.00 42.97 4.17
25 26 3.279116 TCACGCACTGCCACAAGC 61.279 61.111 0.00 0.00 44.14 4.01
26 27 2.633657 GTCACGCACTGCCACAAG 59.366 61.111 0.00 0.00 0.00 3.16
27 28 3.268603 CGTCACGCACTGCCACAA 61.269 61.111 0.00 0.00 0.00 3.33
56 57 4.845307 CTCCCCTCCCCTTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
57 58 4.845307 CCTCCCCTCCCCTTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
58 59 2.623297 CTACCTCCCCTCCCCTTCCC 62.623 70.000 0.00 0.00 0.00 3.97
59 60 1.074395 CTACCTCCCCTCCCCTTCC 60.074 68.421 0.00 0.00 0.00 3.46
60 61 1.074395 CCTACCTCCCCTCCCCTTC 60.074 68.421 0.00 0.00 0.00 3.46
61 62 1.470448 AACCTACCTCCCCTCCCCTT 61.470 60.000 0.00 0.00 0.00 3.95
62 63 1.470448 AAACCTACCTCCCCTCCCCT 61.470 60.000 0.00 0.00 0.00 4.79
63 64 0.551871 AAAACCTACCTCCCCTCCCC 60.552 60.000 0.00 0.00 0.00 4.81
64 65 0.624254 CAAAACCTACCTCCCCTCCC 59.376 60.000 0.00 0.00 0.00 4.30
65 66 0.034380 GCAAAACCTACCTCCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
66 67 0.034380 GGCAAAACCTACCTCCCCTC 60.034 60.000 0.00 0.00 34.51 4.30
67 68 1.506907 GGGCAAAACCTACCTCCCCT 61.507 60.000 0.00 0.00 39.10 4.79
68 69 1.000019 GGGCAAAACCTACCTCCCC 60.000 63.158 0.00 0.00 39.10 4.81
69 70 0.034380 GAGGGCAAAACCTACCTCCC 60.034 60.000 0.00 0.00 42.87 4.30
70 71 3.571748 GAGGGCAAAACCTACCTCC 57.428 57.895 0.00 0.00 42.87 4.30
86 87 2.162608 AGTTCAATCCACGAGACGAGAG 59.837 50.000 0.00 0.00 0.00 3.20
120 153 4.299796 GCCCAGGTTTGGCCCAGA 62.300 66.667 0.00 0.00 43.58 3.86
154 187 2.743718 CGAGTGTCTGGGCCTGTT 59.256 61.111 4.53 0.00 0.00 3.16
175 208 2.747460 TCCTGGCGCATCAGCAAC 60.747 61.111 10.83 0.00 42.27 4.17
176 209 2.437180 CTCCTGGCGCATCAGCAA 60.437 61.111 10.83 0.00 42.27 3.91
179 212 4.478371 TGGCTCCTGGCGCATCAG 62.478 66.667 10.83 8.37 42.94 2.90
180 213 4.478371 CTGGCTCCTGGCGCATCA 62.478 66.667 10.83 0.00 42.94 3.07
187 220 2.688666 TACTGGGCTGGCTCCTGG 60.689 66.667 0.00 0.00 0.00 4.45
188 221 2.586792 GTACTGGGCTGGCTCCTG 59.413 66.667 0.00 1.10 0.00 3.86
189 222 3.077556 CGTACTGGGCTGGCTCCT 61.078 66.667 0.00 0.00 0.00 3.69
190 223 4.840005 GCGTACTGGGCTGGCTCC 62.840 72.222 0.00 0.00 0.00 4.70
191 224 4.840005 GGCGTACTGGGCTGGCTC 62.840 72.222 0.00 0.00 0.00 4.70
194 227 4.473520 CTGGGCGTACTGGGCTGG 62.474 72.222 0.00 0.00 0.00 4.85
227 260 2.563179 GACAAGTAGGGTTCAGAGCTGA 59.437 50.000 0.00 0.00 37.91 4.26
228 261 2.564947 AGACAAGTAGGGTTCAGAGCTG 59.435 50.000 0.00 0.00 0.00 4.24
229 262 2.829120 GAGACAAGTAGGGTTCAGAGCT 59.171 50.000 0.00 0.00 0.00 4.09
230 263 2.563179 TGAGACAAGTAGGGTTCAGAGC 59.437 50.000 0.00 0.00 0.00 4.09
231 264 4.873746 TTGAGACAAGTAGGGTTCAGAG 57.126 45.455 0.00 0.00 0.00 3.35
232 265 5.623956 TTTTGAGACAAGTAGGGTTCAGA 57.376 39.130 0.00 0.00 0.00 3.27
259 292 2.779506 CGGTAGGGTTCAGAGCTTTTT 58.220 47.619 0.00 0.00 0.00 1.94
260 293 1.610886 GCGGTAGGGTTCAGAGCTTTT 60.611 52.381 0.00 0.00 0.00 2.27
261 294 0.036294 GCGGTAGGGTTCAGAGCTTT 60.036 55.000 0.00 0.00 0.00 3.51
262 295 1.597461 GCGGTAGGGTTCAGAGCTT 59.403 57.895 0.00 0.00 0.00 3.74
300 451 7.864686 TCAATGCATATCCTTCAATTTCTACG 58.135 34.615 0.00 0.00 0.00 3.51
304 481 9.193133 CTGAATCAATGCATATCCTTCAATTTC 57.807 33.333 0.00 0.00 0.00 2.17
314 491 8.375608 AGTACAAGACTGAATCAATGCATATC 57.624 34.615 0.00 0.00 36.87 1.63
335 529 5.587844 TCTCACCGACCTAATCTAACAGTAC 59.412 44.000 0.00 0.00 0.00 2.73
337 531 4.597004 TCTCACCGACCTAATCTAACAGT 58.403 43.478 0.00 0.00 0.00 3.55
338 532 5.067936 ACATCTCACCGACCTAATCTAACAG 59.932 44.000 0.00 0.00 0.00 3.16
339 533 4.954202 ACATCTCACCGACCTAATCTAACA 59.046 41.667 0.00 0.00 0.00 2.41
340 534 5.517322 ACATCTCACCGACCTAATCTAAC 57.483 43.478 0.00 0.00 0.00 2.34
342 536 6.832384 ACTTAACATCTCACCGACCTAATCTA 59.168 38.462 0.00 0.00 0.00 1.98
343 537 5.657302 ACTTAACATCTCACCGACCTAATCT 59.343 40.000 0.00 0.00 0.00 2.40
344 538 5.749109 CACTTAACATCTCACCGACCTAATC 59.251 44.000 0.00 0.00 0.00 1.75
345 539 5.187186 ACACTTAACATCTCACCGACCTAAT 59.813 40.000 0.00 0.00 0.00 1.73
346 540 4.525487 ACACTTAACATCTCACCGACCTAA 59.475 41.667 0.00 0.00 0.00 2.69
347 541 4.084287 ACACTTAACATCTCACCGACCTA 58.916 43.478 0.00 0.00 0.00 3.08
348 542 2.897969 ACACTTAACATCTCACCGACCT 59.102 45.455 0.00 0.00 0.00 3.85
349 543 3.314541 ACACTTAACATCTCACCGACC 57.685 47.619 0.00 0.00 0.00 4.79
374 568 9.507329 AATCTAACAGTACAACATTGAATCAGT 57.493 29.630 0.00 0.00 0.00 3.41
399 593 2.300152 ACTTGTAGCAGCTGCAGACTAA 59.700 45.455 38.24 25.77 45.16 2.24
403 597 0.952497 GCACTTGTAGCAGCTGCAGA 60.952 55.000 38.24 24.02 45.16 4.26
404 598 1.232621 TGCACTTGTAGCAGCTGCAG 61.233 55.000 38.24 28.16 45.16 4.41
422 616 2.697229 TGTACTGGATCCTGCATCTCTG 59.303 50.000 17.94 0.00 0.00 3.35
423 617 2.697751 GTGTACTGGATCCTGCATCTCT 59.302 50.000 17.94 0.81 0.00 3.10
424 618 2.544694 CGTGTACTGGATCCTGCATCTC 60.545 54.545 17.94 8.74 0.00 2.75
425 619 1.410517 CGTGTACTGGATCCTGCATCT 59.589 52.381 17.94 1.88 0.00 2.90
426 620 1.137086 ACGTGTACTGGATCCTGCATC 59.863 52.381 17.94 9.35 0.00 3.91
427 621 1.137086 GACGTGTACTGGATCCTGCAT 59.863 52.381 17.94 2.95 0.00 3.96
428 622 0.530744 GACGTGTACTGGATCCTGCA 59.469 55.000 17.94 2.76 0.00 4.41
461 655 6.226787 GGATACATATTGCTCTGCTTGTAGT 58.773 40.000 0.00 0.00 0.00 2.73
519 721 0.530288 ACACACTGGCAAAACCACAC 59.470 50.000 0.00 0.00 46.36 3.82
521 723 0.179113 CCACACACTGGCAAAACCAC 60.179 55.000 0.00 0.00 46.36 4.16
523 725 0.534873 AACCACACACTGGCAAAACC 59.465 50.000 0.00 0.00 45.32 3.27
524 726 2.267426 GAAACCACACACTGGCAAAAC 58.733 47.619 0.00 0.00 45.32 2.43
529 750 0.385390 CAAGGAAACCACACACTGGC 59.615 55.000 0.00 0.00 45.32 4.85
553 777 1.527380 GAGAAAACCCCCACGCACA 60.527 57.895 0.00 0.00 0.00 4.57
554 778 2.265904 GGAGAAAACCCCCACGCAC 61.266 63.158 0.00 0.00 0.00 5.34
649 874 7.504238 TCTGTACTGTTAATTGGTTGGTTTCAT 59.496 33.333 0.00 0.00 0.00 2.57
668 893 4.281182 ACACGAGGTTTCAGATTCTGTACT 59.719 41.667 13.23 7.52 32.61 2.73
669 894 4.557205 ACACGAGGTTTCAGATTCTGTAC 58.443 43.478 13.23 11.92 32.61 2.90
700 925 9.520515 AATAGTACAAGACAACATTTTCTGGAT 57.479 29.630 0.00 0.00 0.00 3.41
751 977 9.104965 TCGAGATTTAACGATCCAACAAAATAT 57.895 29.630 0.00 0.00 33.62 1.28
790 1017 6.204359 CCAATAGCTCAATTGCACAGTTATC 58.796 40.000 0.00 0.00 35.85 1.75
794 1021 2.756760 CCCAATAGCTCAATTGCACAGT 59.243 45.455 0.00 0.00 35.85 3.55
920 1570 6.759497 ACTAGGGCTTCACATTTTTATCAC 57.241 37.500 0.00 0.00 0.00 3.06
938 1588 8.519799 AAGTTCAGAGAAGAGATCTAACTAGG 57.480 38.462 0.00 0.00 38.96 3.02
1039 1698 2.280552 TTAGCGTGAGAAGGCCGGT 61.281 57.895 1.90 0.00 36.22 5.28
1043 1702 0.460459 GGGAGTTAGCGTGAGAAGGC 60.460 60.000 0.00 0.00 0.00 4.35
1148 1807 1.160137 GCGCAGAAACTTCTCCATGT 58.840 50.000 0.30 0.00 34.74 3.21
1151 1810 1.512926 GAAGCGCAGAAACTTCTCCA 58.487 50.000 11.47 0.00 39.36 3.86
1363 2022 2.164624 CCTCAAGAACCACGTCTCTAGG 59.835 54.545 0.00 0.00 0.00 3.02
1380 2039 1.364678 TCCACATTAGGGTCCTCCTCA 59.635 52.381 0.00 0.00 44.06 3.86
1458 2117 1.874562 CACAGCTCAAGCAGAAGGC 59.125 57.895 4.59 0.00 45.16 4.35
1472 2131 1.039785 TGAGATCCTCCGAGGCACAG 61.040 60.000 9.87 0.00 34.61 3.66
1502 2161 9.796120 AAATAAACACCATACAATTTGGTATCG 57.204 29.630 0.00 0.00 45.71 2.92
1540 2199 5.705441 TCGCATTAGAAGAAGTTGGTTCAAT 59.295 36.000 0.00 0.00 37.67 2.57
1610 2269 6.741992 TGAAGTAAATCAAATGCAGTCGAT 57.258 33.333 0.00 0.00 0.00 3.59
1674 2333 1.065926 TCACTAGGAGCCTGTGCATTG 60.066 52.381 0.00 0.00 41.13 2.82
1681 2340 2.034878 TGTGCTATCACTAGGAGCCTG 58.965 52.381 0.00 0.00 43.49 4.85
1709 2368 1.434188 TCCACACATGACTTCACCCT 58.566 50.000 0.00 0.00 0.00 4.34
1719 2378 1.280133 AGTGTCAGGGATCCACACATG 59.720 52.381 26.88 12.99 42.48 3.21
1843 2502 9.003658 TGACCTCTGAAACAAGAATCTAAATTC 57.996 33.333 0.00 0.00 41.43 2.17
1913 2572 5.046014 AGGGGATAATGTCACTGCTGATATC 60.046 44.000 0.00 0.00 28.49 1.63
1955 2615 3.023119 CACCTATACATTGGCTTTGGCA 58.977 45.455 0.00 0.00 40.87 4.92
2045 2707 4.925054 GCATTAAATGAGCTTTGTCTGCAA 59.075 37.500 0.00 0.00 32.02 4.08
2052 2714 6.161381 AGAACAAGGCATTAAATGAGCTTTG 58.839 36.000 6.90 6.90 46.66 2.77
2121 2784 3.657634 TGAGTCTTGACTCTTGCACATC 58.342 45.455 25.21 3.84 37.62 3.06
2144 2807 5.321927 TGTTACATGTGGACTCTCTCACTA 58.678 41.667 9.11 0.00 35.15 2.74
2167 2830 2.439507 ACCTTCGATAACCATGATGCCT 59.560 45.455 0.00 0.00 0.00 4.75
2188 2851 4.828387 GGGGTTTCAAGGTGTTGTATTGTA 59.172 41.667 0.00 0.00 34.98 2.41
2189 2852 3.639561 GGGGTTTCAAGGTGTTGTATTGT 59.360 43.478 0.00 0.00 34.98 2.71
2190 2853 3.639094 TGGGGTTTCAAGGTGTTGTATTG 59.361 43.478 0.00 0.00 34.98 1.90
2191 2854 3.917300 TGGGGTTTCAAGGTGTTGTATT 58.083 40.909 0.00 0.00 34.98 1.89
2192 2855 3.603965 TGGGGTTTCAAGGTGTTGTAT 57.396 42.857 0.00 0.00 34.98 2.29
2222 2885 9.872721 AGATACATAACATAATCAGCTCATCTG 57.127 33.333 0.00 0.00 44.21 2.90
2225 2888 9.872721 CAGAGATACATAACATAATCAGCTCAT 57.127 33.333 0.00 0.00 0.00 2.90
2226 2889 8.309656 CCAGAGATACATAACATAATCAGCTCA 58.690 37.037 0.00 0.00 0.00 4.26
2227 2890 8.310382 ACCAGAGATACATAACATAATCAGCTC 58.690 37.037 0.00 0.00 0.00 4.09
2228 2891 8.093307 CACCAGAGATACATAACATAATCAGCT 58.907 37.037 0.00 0.00 0.00 4.24
2229 2892 8.090831 TCACCAGAGATACATAACATAATCAGC 58.909 37.037 0.00 0.00 0.00 4.26
2259 2922 9.930693 ACAACACAAAAGGAACTAAAATGTAAA 57.069 25.926 0.00 0.00 38.49 2.01
2260 2923 9.930693 AACAACACAAAAGGAACTAAAATGTAA 57.069 25.926 0.00 0.00 38.49 2.41
2261 2924 9.360093 CAACAACACAAAAGGAACTAAAATGTA 57.640 29.630 0.00 0.00 38.49 2.29
2262 2925 7.148490 GCAACAACACAAAAGGAACTAAAATGT 60.148 33.333 0.00 0.00 38.49 2.71
2263 2926 7.179410 GCAACAACACAAAAGGAACTAAAATG 58.821 34.615 0.00 0.00 38.49 2.32
2264 2927 6.315144 GGCAACAACACAAAAGGAACTAAAAT 59.685 34.615 0.00 0.00 38.49 1.82
2265 2928 5.639931 GGCAACAACACAAAAGGAACTAAAA 59.360 36.000 0.00 0.00 38.49 1.52
2266 2929 5.046950 AGGCAACAACACAAAAGGAACTAAA 60.047 36.000 0.00 0.00 36.59 1.85
2267 2930 4.464597 AGGCAACAACACAAAAGGAACTAA 59.535 37.500 0.00 0.00 36.59 2.24
2268 2931 4.020543 AGGCAACAACACAAAAGGAACTA 58.979 39.130 0.00 0.00 36.59 2.24
2269 2932 2.831526 AGGCAACAACACAAAAGGAACT 59.168 40.909 0.00 0.00 40.19 3.01
2270 2933 3.186909 GAGGCAACAACACAAAAGGAAC 58.813 45.455 0.00 0.00 41.41 3.62
2271 2934 2.167487 GGAGGCAACAACACAAAAGGAA 59.833 45.455 0.00 0.00 41.41 3.36
2272 2935 1.754226 GGAGGCAACAACACAAAAGGA 59.246 47.619 0.00 0.00 41.41 3.36
2273 2936 1.480137 TGGAGGCAACAACACAAAAGG 59.520 47.619 0.00 0.00 41.41 3.11
2274 2937 2.957491 TGGAGGCAACAACACAAAAG 57.043 45.000 0.00 0.00 41.41 2.27
2275 2938 3.902881 ATTGGAGGCAACAACACAAAA 57.097 38.095 0.00 0.00 41.41 2.44
2276 2939 4.646945 TCTTATTGGAGGCAACAACACAAA 59.353 37.500 0.00 0.00 41.41 2.83
2277 2940 4.211125 TCTTATTGGAGGCAACAACACAA 58.789 39.130 0.00 0.00 41.41 3.33
2278 2941 3.826524 TCTTATTGGAGGCAACAACACA 58.173 40.909 0.00 0.00 41.41 3.72
2279 2942 6.318648 TCATATCTTATTGGAGGCAACAACAC 59.681 38.462 0.00 0.00 41.41 3.32
2280 2943 6.422333 TCATATCTTATTGGAGGCAACAACA 58.578 36.000 0.00 0.00 41.41 3.33
2281 2944 6.016777 CCTCATATCTTATTGGAGGCAACAAC 60.017 42.308 0.00 0.00 38.77 3.32
2282 2945 6.064060 CCTCATATCTTATTGGAGGCAACAA 58.936 40.000 0.00 0.00 38.77 2.83
2283 2946 5.369404 TCCTCATATCTTATTGGAGGCAACA 59.631 40.000 0.00 0.00 43.80 3.33
2284 2947 5.869579 TCCTCATATCTTATTGGAGGCAAC 58.130 41.667 0.00 0.00 43.80 4.17
2285 2948 6.101734 AGTTCCTCATATCTTATTGGAGGCAA 59.898 38.462 0.00 0.00 43.80 4.52
2286 2949 5.608437 AGTTCCTCATATCTTATTGGAGGCA 59.392 40.000 0.00 0.00 43.80 4.75
2287 2950 6.120507 AGTTCCTCATATCTTATTGGAGGC 57.879 41.667 0.00 0.00 43.80 4.70
2296 2959 9.153479 AGCTCAAGTTATAGTTCCTCATATCTT 57.847 33.333 0.00 0.00 0.00 2.40
2297 2960 8.584157 CAGCTCAAGTTATAGTTCCTCATATCT 58.416 37.037 0.00 0.00 0.00 1.98
2298 2961 7.330700 GCAGCTCAAGTTATAGTTCCTCATATC 59.669 40.741 0.00 0.00 0.00 1.63
2299 2962 7.016072 AGCAGCTCAAGTTATAGTTCCTCATAT 59.984 37.037 0.00 0.00 0.00 1.78
2300 2963 6.325028 AGCAGCTCAAGTTATAGTTCCTCATA 59.675 38.462 0.00 0.00 0.00 2.15
2301 2964 5.130145 AGCAGCTCAAGTTATAGTTCCTCAT 59.870 40.000 0.00 0.00 0.00 2.90
2302 2965 4.467795 AGCAGCTCAAGTTATAGTTCCTCA 59.532 41.667 0.00 0.00 0.00 3.86
2303 2966 5.017294 AGCAGCTCAAGTTATAGTTCCTC 57.983 43.478 0.00 0.00 0.00 3.71
2304 2967 5.428184 AAGCAGCTCAAGTTATAGTTCCT 57.572 39.130 0.00 0.00 0.00 3.36
2305 2968 7.042335 TCTAAAGCAGCTCAAGTTATAGTTCC 58.958 38.462 0.00 0.00 0.00 3.62
2306 2969 8.547069 CATCTAAAGCAGCTCAAGTTATAGTTC 58.453 37.037 0.00 0.00 0.00 3.01
2307 2970 8.260818 TCATCTAAAGCAGCTCAAGTTATAGTT 58.739 33.333 0.00 0.00 0.00 2.24
2308 2971 7.786030 TCATCTAAAGCAGCTCAAGTTATAGT 58.214 34.615 0.00 0.00 0.00 2.12
2309 2972 8.654230 TTCATCTAAAGCAGCTCAAGTTATAG 57.346 34.615 0.00 0.00 0.00 1.31
2311 2974 9.790344 ATATTCATCTAAAGCAGCTCAAGTTAT 57.210 29.630 0.00 0.00 0.00 1.89
2312 2975 9.618890 AATATTCATCTAAAGCAGCTCAAGTTA 57.381 29.630 0.00 0.00 0.00 2.24
2313 2976 8.517062 AATATTCATCTAAAGCAGCTCAAGTT 57.483 30.769 0.00 0.00 0.00 2.66
2314 2977 7.772292 TGAATATTCATCTAAAGCAGCTCAAGT 59.228 33.333 14.23 0.00 31.01 3.16
2315 2978 8.151141 TGAATATTCATCTAAAGCAGCTCAAG 57.849 34.615 14.23 0.00 31.01 3.02
2316 2979 8.510243 TTGAATATTCATCTAAAGCAGCTCAA 57.490 30.769 18.61 0.00 37.00 3.02
2317 2980 7.228108 CCTTGAATATTCATCTAAAGCAGCTCA 59.772 37.037 18.61 0.00 37.00 4.26
2318 2981 7.583230 CCTTGAATATTCATCTAAAGCAGCTC 58.417 38.462 18.61 0.00 37.00 4.09
2319 2982 6.016443 GCCTTGAATATTCATCTAAAGCAGCT 60.016 38.462 18.61 0.00 37.00 4.24
2320 2983 6.148264 GCCTTGAATATTCATCTAAAGCAGC 58.852 40.000 18.61 8.72 37.00 5.25
2321 2984 6.263842 TGGCCTTGAATATTCATCTAAAGCAG 59.736 38.462 18.61 10.14 37.00 4.24
2322 2985 6.039717 GTGGCCTTGAATATTCATCTAAAGCA 59.960 38.462 18.61 5.01 37.00 3.91
2323 2986 6.264067 AGTGGCCTTGAATATTCATCTAAAGC 59.736 38.462 18.61 13.82 37.00 3.51
2324 2987 7.500227 TGAGTGGCCTTGAATATTCATCTAAAG 59.500 37.037 18.61 12.12 37.00 1.85
2325 2988 7.283127 GTGAGTGGCCTTGAATATTCATCTAAA 59.717 37.037 18.61 2.97 37.00 1.85
2326 2989 6.767902 GTGAGTGGCCTTGAATATTCATCTAA 59.232 38.462 18.61 3.34 37.00 2.10
2327 2990 6.100279 AGTGAGTGGCCTTGAATATTCATCTA 59.900 38.462 18.61 3.69 37.00 1.98
2328 2991 5.104193 AGTGAGTGGCCTTGAATATTCATCT 60.104 40.000 18.61 10.15 37.00 2.90
2329 2992 5.008415 CAGTGAGTGGCCTTGAATATTCATC 59.992 44.000 18.61 11.59 37.00 2.92
2330 2993 4.885907 CAGTGAGTGGCCTTGAATATTCAT 59.114 41.667 18.61 2.10 37.00 2.57
2331 2994 4.019411 TCAGTGAGTGGCCTTGAATATTCA 60.019 41.667 14.23 14.23 34.92 2.57
2332 2995 4.517285 TCAGTGAGTGGCCTTGAATATTC 58.483 43.478 8.60 8.60 0.00 1.75
2333 2996 4.574674 TCAGTGAGTGGCCTTGAATATT 57.425 40.909 3.32 0.00 0.00 1.28
2334 2997 4.785346 ATCAGTGAGTGGCCTTGAATAT 57.215 40.909 3.32 0.00 0.00 1.28
2335 2998 5.692115 TTATCAGTGAGTGGCCTTGAATA 57.308 39.130 3.32 0.00 0.00 1.75
2336 2999 4.574674 TTATCAGTGAGTGGCCTTGAAT 57.425 40.909 3.32 0.00 0.00 2.57
2337 3000 4.574674 ATTATCAGTGAGTGGCCTTGAA 57.425 40.909 3.32 0.00 0.00 2.69
2338 3001 4.517285 GAATTATCAGTGAGTGGCCTTGA 58.483 43.478 3.32 0.00 0.00 3.02
2339 3002 3.310774 CGAATTATCAGTGAGTGGCCTTG 59.689 47.826 3.32 0.00 0.00 3.61
2340 3003 3.055094 ACGAATTATCAGTGAGTGGCCTT 60.055 43.478 3.32 0.00 0.00 4.35
2341 3004 2.501723 ACGAATTATCAGTGAGTGGCCT 59.498 45.455 3.32 0.00 0.00 5.19
2342 3005 2.906354 ACGAATTATCAGTGAGTGGCC 58.094 47.619 0.00 0.00 0.00 5.36
2343 3006 3.684788 ACAACGAATTATCAGTGAGTGGC 59.315 43.478 0.00 0.00 0.00 5.01
2344 3007 5.408299 TCAACAACGAATTATCAGTGAGTGG 59.592 40.000 0.00 0.00 0.00 4.00
2345 3008 6.466308 TCAACAACGAATTATCAGTGAGTG 57.534 37.500 0.00 0.00 0.00 3.51
2346 3009 6.706270 ACTTCAACAACGAATTATCAGTGAGT 59.294 34.615 0.00 0.00 0.00 3.41
2347 3010 7.095649 TGACTTCAACAACGAATTATCAGTGAG 60.096 37.037 0.00 0.00 0.00 3.51
2348 3011 6.704050 TGACTTCAACAACGAATTATCAGTGA 59.296 34.615 0.00 0.00 0.00 3.41
2349 3012 6.887368 TGACTTCAACAACGAATTATCAGTG 58.113 36.000 0.00 0.00 0.00 3.66
2350 3013 7.490962 TTGACTTCAACAACGAATTATCAGT 57.509 32.000 0.00 0.00 0.00 3.41
2351 3014 8.682016 GTTTTGACTTCAACAACGAATTATCAG 58.318 33.333 0.00 0.00 35.28 2.90
2352 3015 7.646130 GGTTTTGACTTCAACAACGAATTATCA 59.354 33.333 0.00 0.00 35.28 2.15
2353 3016 7.860872 AGGTTTTGACTTCAACAACGAATTATC 59.139 33.333 0.00 0.00 35.28 1.75
2354 3017 7.647715 CAGGTTTTGACTTCAACAACGAATTAT 59.352 33.333 0.00 0.00 35.28 1.28
2355 3018 6.970043 CAGGTTTTGACTTCAACAACGAATTA 59.030 34.615 0.00 0.00 35.28 1.40
2356 3019 5.804979 CAGGTTTTGACTTCAACAACGAATT 59.195 36.000 0.00 0.00 35.28 2.17
2357 3020 5.339990 CAGGTTTTGACTTCAACAACGAAT 58.660 37.500 0.00 0.00 35.28 3.34
2358 3021 4.380023 CCAGGTTTTGACTTCAACAACGAA 60.380 41.667 0.00 0.00 35.28 3.85
2359 3022 3.127895 CCAGGTTTTGACTTCAACAACGA 59.872 43.478 0.00 0.00 35.28 3.85
2360 3023 3.127895 TCCAGGTTTTGACTTCAACAACG 59.872 43.478 0.00 0.00 35.28 4.10
2361 3024 4.082463 TGTCCAGGTTTTGACTTCAACAAC 60.082 41.667 0.00 0.95 35.28 3.32
2362 3025 4.082845 TGTCCAGGTTTTGACTTCAACAA 58.917 39.130 0.00 0.00 35.28 2.83
2363 3026 3.691575 TGTCCAGGTTTTGACTTCAACA 58.308 40.909 0.00 0.00 35.28 3.33
2364 3027 4.918810 ATGTCCAGGTTTTGACTTCAAC 57.081 40.909 0.00 0.00 35.28 3.18
2365 3028 5.163457 GGAAATGTCCAGGTTTTGACTTCAA 60.163 40.000 0.00 0.00 44.26 2.69
2366 3029 4.340950 GGAAATGTCCAGGTTTTGACTTCA 59.659 41.667 0.00 0.00 44.26 3.02
2367 3030 4.871513 GGAAATGTCCAGGTTTTGACTTC 58.128 43.478 0.00 0.00 44.26 3.01
2368 3031 4.937201 GGAAATGTCCAGGTTTTGACTT 57.063 40.909 0.00 0.00 44.26 3.01
2380 3043 7.503566 TGAATGAAATGATAGGAGGAAATGTCC 59.496 37.037 0.00 0.00 45.35 4.02
2381 3044 8.348507 GTGAATGAAATGATAGGAGGAAATGTC 58.651 37.037 0.00 0.00 0.00 3.06
2382 3045 7.835682 TGTGAATGAAATGATAGGAGGAAATGT 59.164 33.333 0.00 0.00 0.00 2.71
2383 3046 8.229253 TGTGAATGAAATGATAGGAGGAAATG 57.771 34.615 0.00 0.00 0.00 2.32
2384 3047 8.827832 TTGTGAATGAAATGATAGGAGGAAAT 57.172 30.769 0.00 0.00 0.00 2.17
2385 3048 8.648698 TTTGTGAATGAAATGATAGGAGGAAA 57.351 30.769 0.00 0.00 0.00 3.13
2386 3049 8.827832 ATTTGTGAATGAAATGATAGGAGGAA 57.172 30.769 0.00 0.00 0.00 3.36
2396 3059 9.787532 ACCGTTTAGATATTTGTGAATGAAATG 57.212 29.630 0.00 0.00 0.00 2.32
2397 3060 9.787532 CACCGTTTAGATATTTGTGAATGAAAT 57.212 29.630 0.00 0.00 0.00 2.17
2398 3061 8.788806 ACACCGTTTAGATATTTGTGAATGAAA 58.211 29.630 0.00 0.00 0.00 2.69
2399 3062 8.330466 ACACCGTTTAGATATTTGTGAATGAA 57.670 30.769 0.00 0.00 0.00 2.57
2400 3063 7.915293 ACACCGTTTAGATATTTGTGAATGA 57.085 32.000 0.00 0.00 0.00 2.57
2401 3064 8.964420 AAACACCGTTTAGATATTTGTGAATG 57.036 30.769 0.00 0.00 0.00 2.67
2402 3065 9.405587 CAAAACACCGTTTAGATATTTGTGAAT 57.594 29.630 0.00 0.00 0.00 2.57
2403 3066 8.622157 TCAAAACACCGTTTAGATATTTGTGAA 58.378 29.630 0.00 0.00 0.00 3.18
2404 3067 8.071368 GTCAAAACACCGTTTAGATATTTGTGA 58.929 33.333 0.00 0.00 0.00 3.58
2405 3068 8.073768 AGTCAAAACACCGTTTAGATATTTGTG 58.926 33.333 0.00 0.00 0.00 3.33
2406 3069 8.073768 CAGTCAAAACACCGTTTAGATATTTGT 58.926 33.333 0.00 0.00 0.00 2.83
2407 3070 8.073768 ACAGTCAAAACACCGTTTAGATATTTG 58.926 33.333 0.00 0.00 0.00 2.32
2408 3071 8.161699 ACAGTCAAAACACCGTTTAGATATTT 57.838 30.769 0.00 0.00 0.00 1.40
2409 3072 7.739498 ACAGTCAAAACACCGTTTAGATATT 57.261 32.000 0.00 0.00 0.00 1.28
2410 3073 7.739498 AACAGTCAAAACACCGTTTAGATAT 57.261 32.000 0.00 0.00 0.00 1.63
2411 3074 7.556733 AAACAGTCAAAACACCGTTTAGATA 57.443 32.000 0.00 0.00 0.00 1.98
2412 3075 6.445357 AAACAGTCAAAACACCGTTTAGAT 57.555 33.333 0.00 0.00 0.00 1.98
2413 3076 5.883503 AAACAGTCAAAACACCGTTTAGA 57.116 34.783 0.00 0.00 0.00 2.10
2414 3077 6.544622 TGTAAACAGTCAAAACACCGTTTAG 58.455 36.000 0.00 0.00 32.34 1.85
2415 3078 6.492007 TGTAAACAGTCAAAACACCGTTTA 57.508 33.333 0.00 0.00 31.31 2.01
2416 3079 5.373981 TGTAAACAGTCAAAACACCGTTT 57.626 34.783 0.00 0.00 32.63 3.60
2417 3080 5.373981 TTGTAAACAGTCAAAACACCGTT 57.626 34.783 0.00 0.00 0.00 4.44
2418 3081 5.373981 TTTGTAAACAGTCAAAACACCGT 57.626 34.783 0.00 0.00 31.86 4.83
2419 3082 4.796312 CCTTTGTAAACAGTCAAAACACCG 59.204 41.667 0.00 0.00 33.99 4.94
2420 3083 5.716094 ACCTTTGTAAACAGTCAAAACACC 58.284 37.500 0.00 0.00 33.99 4.16
2421 3084 6.471198 GCTACCTTTGTAAACAGTCAAAACAC 59.529 38.462 0.00 0.00 33.99 3.32
2422 3085 6.557110 GCTACCTTTGTAAACAGTCAAAACA 58.443 36.000 0.00 0.00 33.99 2.83
2423 3086 5.679792 CGCTACCTTTGTAAACAGTCAAAAC 59.320 40.000 0.00 0.00 33.99 2.43
2424 3087 5.220892 CCGCTACCTTTGTAAACAGTCAAAA 60.221 40.000 0.00 0.00 33.99 2.44
2425 3088 4.273969 CCGCTACCTTTGTAAACAGTCAAA 59.726 41.667 0.00 0.00 33.44 2.69
2426 3089 3.810941 CCGCTACCTTTGTAAACAGTCAA 59.189 43.478 0.00 0.00 0.00 3.18
2427 3090 3.069872 TCCGCTACCTTTGTAAACAGTCA 59.930 43.478 0.00 0.00 0.00 3.41
2428 3091 3.431233 GTCCGCTACCTTTGTAAACAGTC 59.569 47.826 0.00 0.00 0.00 3.51
2429 3092 3.181463 TGTCCGCTACCTTTGTAAACAGT 60.181 43.478 0.00 0.00 0.00 3.55
2430 3093 3.395639 TGTCCGCTACCTTTGTAAACAG 58.604 45.455 0.00 0.00 0.00 3.16
2431 3094 3.472283 TGTCCGCTACCTTTGTAAACA 57.528 42.857 0.00 0.00 0.00 2.83
2432 3095 4.319984 CCTTTGTCCGCTACCTTTGTAAAC 60.320 45.833 0.00 0.00 0.00 2.01
2433 3096 3.816523 CCTTTGTCCGCTACCTTTGTAAA 59.183 43.478 0.00 0.00 0.00 2.01
2434 3097 3.181452 ACCTTTGTCCGCTACCTTTGTAA 60.181 43.478 0.00 0.00 0.00 2.41
2435 3098 2.369532 ACCTTTGTCCGCTACCTTTGTA 59.630 45.455 0.00 0.00 0.00 2.41
2436 3099 1.142262 ACCTTTGTCCGCTACCTTTGT 59.858 47.619 0.00 0.00 0.00 2.83
2437 3100 1.892209 ACCTTTGTCCGCTACCTTTG 58.108 50.000 0.00 0.00 0.00 2.77
2438 3101 2.636403 ACTACCTTTGTCCGCTACCTTT 59.364 45.455 0.00 0.00 0.00 3.11
2439 3102 2.028385 CACTACCTTTGTCCGCTACCTT 60.028 50.000 0.00 0.00 0.00 3.50
2440 3103 1.549170 CACTACCTTTGTCCGCTACCT 59.451 52.381 0.00 0.00 0.00 3.08
2441 3104 1.405121 CCACTACCTTTGTCCGCTACC 60.405 57.143 0.00 0.00 0.00 3.18
2442 3105 1.547372 TCCACTACCTTTGTCCGCTAC 59.453 52.381 0.00 0.00 0.00 3.58
2443 3106 1.822990 CTCCACTACCTTTGTCCGCTA 59.177 52.381 0.00 0.00 0.00 4.26
2444 3107 0.608640 CTCCACTACCTTTGTCCGCT 59.391 55.000 0.00 0.00 0.00 5.52
2445 3108 0.606604 TCTCCACTACCTTTGTCCGC 59.393 55.000 0.00 0.00 0.00 5.54
2446 3109 2.496070 TCATCTCCACTACCTTTGTCCG 59.504 50.000 0.00 0.00 0.00 4.79
2447 3110 3.769844 TCTCATCTCCACTACCTTTGTCC 59.230 47.826 0.00 0.00 0.00 4.02
2448 3111 5.606348 ATCTCATCTCCACTACCTTTGTC 57.394 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.