Multiple sequence alignment - TraesCS3B01G533000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G533000 chr3B 100.000 2441 0 0 1 2441 773567657 773570097 0.000000e+00 4508.0
1 TraesCS3B01G533000 chr3B 89.038 1040 90 5 905 1929 773542467 773543497 0.000000e+00 1267.0
2 TraesCS3B01G533000 chr3B 86.660 952 120 5 993 1939 771253078 771254027 0.000000e+00 1048.0
3 TraesCS3B01G533000 chr3B 85.368 950 134 4 993 1938 770953530 770952582 0.000000e+00 979.0
4 TraesCS3B01G533000 chr3B 100.000 308 0 0 2785 3092 773570441 773570748 1.240000e-158 569.0
5 TraesCS3B01G533000 chr3B 84.536 388 52 6 1315 1697 771220742 771221126 8.090000e-101 377.0
6 TraesCS3B01G533000 chr3B 86.392 316 31 5 1 305 773541745 773542059 4.940000e-88 335.0
7 TraesCS3B01G533000 chr3B 88.542 192 22 0 1748 1939 771221221 771221412 1.850000e-57 233.0
8 TraesCS3B01G533000 chr3B 89.394 66 5 2 307 370 773542194 773542259 7.110000e-12 82.4
9 TraesCS3B01G533000 chr3B 95.000 40 2 0 854 893 773568213 773568174 2.570000e-06 63.9
10 TraesCS3B01G533000 chr3B 95.000 40 2 0 518 557 773568549 773568510 2.570000e-06 63.9
11 TraesCS3B01G533000 chr3A 94.883 1192 54 6 901 2090 714541265 714542451 0.000000e+00 1857.0
12 TraesCS3B01G533000 chr3A 88.663 1032 93 13 898 1905 714535048 714536079 0.000000e+00 1236.0
13 TraesCS3B01G533000 chr3A 87.664 381 33 8 1 369 714534371 714534749 6.130000e-117 431.0
14 TraesCS3B01G533000 chr3A 91.713 181 14 1 2123 2302 714542446 714542626 1.840000e-62 250.0
15 TraesCS3B01G533000 chr3A 82.803 157 15 7 2828 2984 53223064 53222920 2.500000e-26 130.0
16 TraesCS3B01G533000 chr3D 89.068 1052 95 11 898 1929 579292572 579293623 0.000000e+00 1288.0
17 TraesCS3B01G533000 chr3D 86.966 959 122 2 993 1948 577657984 577657026 0.000000e+00 1075.0
18 TraesCS3B01G533000 chr3D 86.444 959 127 2 993 1948 578052797 578053755 0.000000e+00 1048.0
19 TraesCS3B01G533000 chr3D 95.372 605 23 3 892 1492 579305514 579306117 0.000000e+00 957.0
20 TraesCS3B01G533000 chr3D 90.712 323 18 12 113 426 579304831 579305150 1.330000e-113 420.0
21 TraesCS3B01G533000 chr3D 85.714 378 42 10 1 367 579291222 579291598 3.740000e-104 388.0
22 TraesCS3B01G533000 chr3D 90.493 284 19 3 1916 2191 579306117 579306400 4.870000e-98 368.0
23 TraesCS3B01G533000 chr3D 86.090 266 32 4 2830 3092 579316222 579316485 6.530000e-72 281.0
24 TraesCS3B01G533000 chr3D 88.618 123 10 3 2184 2302 579315044 579315166 2.480000e-31 147.0
25 TraesCS3B01G533000 chrUn 95.257 253 12 0 560 812 42056885 42057137 4.800000e-108 401.0
26 TraesCS3B01G533000 chrUn 94.922 256 11 1 562 815 250210411 250210666 1.730000e-107 399.0
27 TraesCS3B01G533000 chrUn 94.922 256 11 1 562 815 254014691 254014946 1.730000e-107 399.0
28 TraesCS3B01G533000 chrUn 94.141 256 12 2 562 815 226035102 226035356 1.340000e-103 387.0
29 TraesCS3B01G533000 chr5D 95.257 253 12 0 560 812 454842034 454842286 4.800000e-108 401.0
30 TraesCS3B01G533000 chr7B 94.163 257 15 0 562 818 557463035 557463291 2.890000e-105 392.0
31 TraesCS3B01G533000 chr7D 94.466 253 14 0 560 812 598726967 598726715 1.040000e-104 390.0
32 TraesCS3B01G533000 chr7D 93.676 253 16 0 560 812 45518718 45518466 2.250000e-101 379.0
33 TraesCS3B01G533000 chr7D 100.000 32 0 0 423 454 618368852 618368883 3.330000e-05 60.2
34 TraesCS3B01G533000 chr7D 100.000 31 0 0 424 454 49381990 49381960 1.200000e-04 58.4
35 TraesCS3B01G533000 chr7D 94.737 38 1 1 418 454 523485493 523485530 1.200000e-04 58.4
36 TraesCS3B01G533000 chr5B 93.676 253 16 0 560 812 396146363 396146615 2.250000e-101 379.0
37 TraesCS3B01G533000 chr5B 80.469 256 41 5 2831 3085 441514453 441514700 1.460000e-43 187.0
38 TraesCS3B01G533000 chr5B 100.000 31 0 0 424 454 677155400 677155430 1.200000e-04 58.4
39 TraesCS3B01G533000 chr5B 96.875 32 0 1 484 514 147440526 147440495 6.000000e-03 52.8
40 TraesCS3B01G533000 chr4B 81.716 268 43 4 2828 3092 128018740 128018476 5.190000e-53 219.0
41 TraesCS3B01G533000 chr4B 100.000 31 0 0 489 519 398249971 398249941 1.200000e-04 58.4
42 TraesCS3B01G533000 chr5A 79.623 265 46 6 2833 3092 577486345 577486084 1.890000e-42 183.0
43 TraesCS3B01G533000 chr2B 100.000 32 0 0 423 454 354080893 354080862 3.330000e-05 60.2
44 TraesCS3B01G533000 chr2A 100.000 32 0 0 423 454 362046895 362046926 3.330000e-05 60.2
45 TraesCS3B01G533000 chr7A 97.059 34 1 0 489 522 488160828 488160795 1.200000e-04 58.4
46 TraesCS3B01G533000 chr7A 97.059 34 1 0 489 522 488501144 488501111 1.200000e-04 58.4
47 TraesCS3B01G533000 chr6D 100.000 31 0 0 424 454 465043830 465043860 1.200000e-04 58.4
48 TraesCS3B01G533000 chr6D 100.000 28 0 0 484 511 106954602 106954629 6.000000e-03 52.8
49 TraesCS3B01G533000 chr4A 100.000 31 0 0 424 454 725319318 725319348 1.200000e-04 58.4
50 TraesCS3B01G533000 chr1A 100.000 31 0 0 426 456 42437607 42437637 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G533000 chr3B 773567657 773570748 3091 False 2538.500000 4508 100.000000 1 3092 2 chr3B.!!$F4 3091
1 TraesCS3B01G533000 chr3B 771253078 771254027 949 False 1048.000000 1048 86.660000 993 1939 1 chr3B.!!$F1 946
2 TraesCS3B01G533000 chr3B 770952582 770953530 948 True 979.000000 979 85.368000 993 1938 1 chr3B.!!$R1 945
3 TraesCS3B01G533000 chr3B 773541745 773543497 1752 False 561.466667 1267 88.274667 1 1929 3 chr3B.!!$F3 1928
4 TraesCS3B01G533000 chr3B 771220742 771221412 670 False 305.000000 377 86.539000 1315 1939 2 chr3B.!!$F2 624
5 TraesCS3B01G533000 chr3A 714541265 714542626 1361 False 1053.500000 1857 93.298000 901 2302 2 chr3A.!!$F2 1401
6 TraesCS3B01G533000 chr3A 714534371 714536079 1708 False 833.500000 1236 88.163500 1 1905 2 chr3A.!!$F1 1904
7 TraesCS3B01G533000 chr3D 577657026 577657984 958 True 1075.000000 1075 86.966000 993 1948 1 chr3D.!!$R1 955
8 TraesCS3B01G533000 chr3D 578052797 578053755 958 False 1048.000000 1048 86.444000 993 1948 1 chr3D.!!$F1 955
9 TraesCS3B01G533000 chr3D 579291222 579293623 2401 False 838.000000 1288 87.391000 1 1929 2 chr3D.!!$F2 1928
10 TraesCS3B01G533000 chr3D 579304831 579306400 1569 False 581.666667 957 92.192333 113 2191 3 chr3D.!!$F3 2078
11 TraesCS3B01G533000 chr3D 579315044 579316485 1441 False 214.000000 281 87.354000 2184 3092 2 chr3D.!!$F4 908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 1110 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.0 0.00 0.00 0.00 4.37 F
802 1991 0.038166 GGCTGAACCATGGTCCTGAA 59.962 55.0 20.07 1.26 38.86 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 2925 0.173481 GTAACCGTACTTCCCGTCCC 59.827 60.0 0.0 0.0 0.0 4.46 R
2794 4222 0.105246 TGGCAGGTTTTTGGGTGGAT 60.105 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.561643 TGGATCTCCGCAACTCTCTT 58.438 50.000 0.00 0.00 39.43 2.85
27 28 4.020573 TGGATCTCCGCAACTCTCTTTTTA 60.021 41.667 0.00 0.00 39.43 1.52
31 32 7.442666 GGATCTCCGCAACTCTCTTTTTATATT 59.557 37.037 0.00 0.00 0.00 1.28
33 34 7.327975 TCTCCGCAACTCTCTTTTTATATTGA 58.672 34.615 0.00 0.00 0.00 2.57
34 35 7.987458 TCTCCGCAACTCTCTTTTTATATTGAT 59.013 33.333 0.00 0.00 0.00 2.57
87 97 9.605275 CAATAAGATGAGACTGATCTTTGGTTA 57.395 33.333 20.24 4.77 40.09 2.85
89 99 6.232581 AGATGAGACTGATCTTTGGTTAGG 57.767 41.667 0.00 0.00 34.34 2.69
90 100 5.960811 AGATGAGACTGATCTTTGGTTAGGA 59.039 40.000 0.00 0.00 34.34 2.94
103 113 3.339253 GGTTAGGAGAAACCGCCTTTA 57.661 47.619 0.00 0.00 44.74 1.85
227 237 3.248602 GTCGCCATCCTTGCAAGTAATAG 59.751 47.826 24.35 11.86 0.00 1.73
387 850 8.233868 CGTATAATGATGAGTTCGAAGAGAGAT 58.766 37.037 0.00 0.00 38.43 2.75
388 851 9.340695 GTATAATGATGAGTTCGAAGAGAGATG 57.659 37.037 0.00 0.00 38.43 2.90
397 860 4.368874 TCGAAGAGAGATGCAGAGAAAG 57.631 45.455 0.00 0.00 0.00 2.62
398 861 4.013050 TCGAAGAGAGATGCAGAGAAAGA 58.987 43.478 0.00 0.00 0.00 2.52
402 865 4.352009 AGAGAGATGCAGAGAAAGAAGGA 58.648 43.478 0.00 0.00 0.00 3.36
403 866 4.160252 AGAGAGATGCAGAGAAAGAAGGAC 59.840 45.833 0.00 0.00 0.00 3.85
443 1107 5.771165 AGATTTATCTTCTACTCCCTCCGTC 59.229 44.000 0.00 0.00 31.97 4.79
444 1108 2.368311 ATCTTCTACTCCCTCCGTCC 57.632 55.000 0.00 0.00 0.00 4.79
445 1109 0.258194 TCTTCTACTCCCTCCGTCCC 59.742 60.000 0.00 0.00 0.00 4.46
446 1110 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.000 0.00 0.00 0.00 4.37
453 1117 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
454 1118 4.351127 ACTCCCTCCGTCCCATAATATAC 58.649 47.826 0.00 0.00 0.00 1.47
455 1119 4.202749 ACTCCCTCCGTCCCATAATATACA 60.203 45.833 0.00 0.00 0.00 2.29
456 1120 4.955335 TCCCTCCGTCCCATAATATACAT 58.045 43.478 0.00 0.00 0.00 2.29
459 1123 4.081142 CCTCCGTCCCATAATATACATGCA 60.081 45.833 0.00 0.00 0.00 3.96
460 1124 5.084818 TCCGTCCCATAATATACATGCAG 57.915 43.478 0.00 0.00 0.00 4.41
461 1125 4.775253 TCCGTCCCATAATATACATGCAGA 59.225 41.667 0.00 0.00 0.00 4.26
463 1127 5.755375 CCGTCCCATAATATACATGCAGATC 59.245 44.000 0.00 0.00 0.00 2.75
464 1128 6.340522 CGTCCCATAATATACATGCAGATCA 58.659 40.000 0.00 0.00 0.00 2.92
466 1130 7.334171 CGTCCCATAATATACATGCAGATCAAA 59.666 37.037 0.00 0.00 0.00 2.69
467 1131 9.013229 GTCCCATAATATACATGCAGATCAAAA 57.987 33.333 0.00 0.00 0.00 2.44
468 1132 9.758021 TCCCATAATATACATGCAGATCAAAAT 57.242 29.630 0.00 0.00 0.00 1.82
469 1133 9.797556 CCCATAATATACATGCAGATCAAAATG 57.202 33.333 0.00 0.00 0.00 2.32
477 1141 6.927416 ACATGCAGATCAAAATGTTGTACAT 58.073 32.000 0.00 0.00 41.31 2.29
478 1142 6.809689 ACATGCAGATCAAAATGTTGTACATG 59.190 34.615 0.00 12.91 37.97 3.21
479 1143 5.712004 TGCAGATCAAAATGTTGTACATGG 58.288 37.500 0.00 0.00 37.97 3.66
480 1144 4.563976 GCAGATCAAAATGTTGTACATGGC 59.436 41.667 0.00 0.00 37.97 4.40
481 1145 5.712004 CAGATCAAAATGTTGTACATGGCA 58.288 37.500 0.00 0.00 37.97 4.92
482 1146 6.334989 CAGATCAAAATGTTGTACATGGCAT 58.665 36.000 0.00 0.00 37.97 4.40
484 1148 7.009815 CAGATCAAAATGTTGTACATGGCATTC 59.990 37.037 16.10 7.93 37.97 2.67
485 1149 6.343716 TCAAAATGTTGTACATGGCATTCT 57.656 33.333 16.10 5.33 37.97 2.40
502 1198 9.818270 ATGGCATTCTTATATATTATGGGATGG 57.182 33.333 0.00 0.00 0.00 3.51
508 1204 9.452517 TTCTTATATATTATGGGATGGAGGGAG 57.547 37.037 0.00 0.00 0.00 4.30
509 1205 8.587244 TCTTATATATTATGGGATGGAGGGAGT 58.413 37.037 0.00 0.00 0.00 3.85
519 1218 8.748179 ATGGGATGGAGGGAGTATATATTATG 57.252 38.462 0.00 0.00 0.00 1.90
526 1715 9.831682 TGGAGGGAGTATATATTATGTTGTACA 57.168 33.333 0.00 0.00 0.00 2.90
555 1744 9.921637 TGAATATTTAGGGAACAACATTTTGAC 57.078 29.630 0.00 0.00 36.48 3.18
559 1748 8.606040 ATTTAGGGAACAACATTTTGACAATG 57.394 30.769 0.00 0.00 36.48 2.82
560 1749 5.867903 AGGGAACAACATTTTGACAATGA 57.132 34.783 0.00 0.00 36.48 2.57
561 1750 6.232581 AGGGAACAACATTTTGACAATGAA 57.767 33.333 0.00 0.00 36.48 2.57
562 1751 6.648192 AGGGAACAACATTTTGACAATGAAA 58.352 32.000 0.00 0.00 36.48 2.69
563 1752 7.108847 AGGGAACAACATTTTGACAATGAAAA 58.891 30.769 0.00 0.00 36.48 2.29
564 1753 7.774625 AGGGAACAACATTTTGACAATGAAAAT 59.225 29.630 0.00 0.00 36.48 1.82
572 1761 8.901557 CATTTTGACAATGAAAATGTTGTACG 57.098 30.769 10.29 0.00 42.23 3.67
573 1762 7.456684 TTTTGACAATGAAAATGTTGTACGG 57.543 32.000 0.00 0.00 38.57 4.02
574 1763 6.378710 TTGACAATGAAAATGTTGTACGGA 57.621 33.333 0.00 0.00 38.57 4.69
575 1764 6.378710 TGACAATGAAAATGTTGTACGGAA 57.621 33.333 0.00 0.00 38.57 4.30
576 1765 6.202937 TGACAATGAAAATGTTGTACGGAAC 58.797 36.000 0.00 0.00 38.57 3.62
577 1766 5.525199 ACAATGAAAATGTTGTACGGAACC 58.475 37.500 0.00 0.00 36.83 3.62
578 1767 5.067936 ACAATGAAAATGTTGTACGGAACCA 59.932 36.000 0.00 0.00 36.83 3.67
579 1768 5.975693 ATGAAAATGTTGTACGGAACCAT 57.024 34.783 0.00 0.00 0.00 3.55
580 1769 5.114785 TGAAAATGTTGTACGGAACCATG 57.885 39.130 0.00 0.00 0.00 3.66
581 1770 4.022762 TGAAAATGTTGTACGGAACCATGG 60.023 41.667 11.19 11.19 0.00 3.66
582 1771 2.871096 ATGTTGTACGGAACCATGGT 57.129 45.000 13.00 13.00 0.00 3.55
583 1772 2.642154 TGTTGTACGGAACCATGGTT 57.358 45.000 30.23 30.23 41.54 3.67
598 1787 3.471399 GTTCAGCCGAACCTACGC 58.529 61.111 1.04 0.00 44.92 4.42
599 1788 1.080025 GTTCAGCCGAACCTACGCT 60.080 57.895 1.04 0.00 44.92 5.07
600 1789 1.077089 GTTCAGCCGAACCTACGCTC 61.077 60.000 1.04 0.00 44.92 5.03
601 1790 2.537792 TTCAGCCGAACCTACGCTCG 62.538 60.000 0.00 0.00 34.83 5.03
602 1791 2.749044 AGCCGAACCTACGCTCGA 60.749 61.111 0.00 0.00 37.23 4.04
603 1792 2.578981 GCCGAACCTACGCTCGAC 60.579 66.667 0.00 0.00 37.23 4.20
604 1793 2.872557 CCGAACCTACGCTCGACA 59.127 61.111 0.00 0.00 37.23 4.35
605 1794 1.513586 CCGAACCTACGCTCGACAC 60.514 63.158 0.00 0.00 37.23 3.67
606 1795 1.513586 CGAACCTACGCTCGACACC 60.514 63.158 0.00 0.00 37.23 4.16
607 1796 1.513586 GAACCTACGCTCGACACCG 60.514 63.158 0.00 0.00 37.07 4.94
608 1797 2.192608 GAACCTACGCTCGACACCGT 62.193 60.000 6.33 6.33 41.11 4.83
609 1798 1.799258 AACCTACGCTCGACACCGTT 61.799 55.000 6.37 0.00 38.75 4.44
610 1799 1.800315 CCTACGCTCGACACCGTTG 60.800 63.158 6.37 5.08 38.75 4.10
611 1800 1.208358 CTACGCTCGACACCGTTGA 59.792 57.895 6.37 0.00 38.75 3.18
612 1801 0.179171 CTACGCTCGACACCGTTGAT 60.179 55.000 6.37 0.00 38.75 2.57
613 1802 0.241749 TACGCTCGACACCGTTGATT 59.758 50.000 6.37 0.00 38.75 2.57
614 1803 0.599204 ACGCTCGACACCGTTGATTT 60.599 50.000 0.00 0.00 33.26 2.17
615 1804 0.093026 CGCTCGACACCGTTGATTTC 59.907 55.000 0.00 0.00 37.05 2.17
616 1805 1.429463 GCTCGACACCGTTGATTTCT 58.571 50.000 0.00 0.00 37.05 2.52
617 1806 2.602878 GCTCGACACCGTTGATTTCTA 58.397 47.619 0.00 0.00 37.05 2.10
618 1807 2.599082 GCTCGACACCGTTGATTTCTAG 59.401 50.000 0.00 0.00 37.05 2.43
619 1808 3.672511 GCTCGACACCGTTGATTTCTAGA 60.673 47.826 0.00 0.00 37.05 2.43
620 1809 3.829948 TCGACACCGTTGATTTCTAGAC 58.170 45.455 0.00 0.00 37.05 2.59
621 1810 3.253921 TCGACACCGTTGATTTCTAGACA 59.746 43.478 0.00 0.00 37.05 3.41
622 1811 3.364023 CGACACCGTTGATTTCTAGACAC 59.636 47.826 0.00 0.00 0.00 3.67
623 1812 4.557205 GACACCGTTGATTTCTAGACACT 58.443 43.478 0.00 0.00 0.00 3.55
624 1813 5.618418 CGACACCGTTGATTTCTAGACACTA 60.618 44.000 0.00 0.00 0.00 2.74
625 1814 6.282199 ACACCGTTGATTTCTAGACACTAT 57.718 37.500 0.00 0.00 0.00 2.12
626 1815 6.698380 ACACCGTTGATTTCTAGACACTATT 58.302 36.000 0.00 0.00 0.00 1.73
627 1816 6.812160 ACACCGTTGATTTCTAGACACTATTC 59.188 38.462 0.00 0.00 0.00 1.75
628 1817 6.811665 CACCGTTGATTTCTAGACACTATTCA 59.188 38.462 0.00 0.00 0.00 2.57
629 1818 7.492669 CACCGTTGATTTCTAGACACTATTCAT 59.507 37.037 0.00 0.00 0.00 2.57
630 1819 7.492669 ACCGTTGATTTCTAGACACTATTCATG 59.507 37.037 0.00 0.00 0.00 3.07
631 1820 7.706607 CCGTTGATTTCTAGACACTATTCATGA 59.293 37.037 0.00 0.00 0.00 3.07
632 1821 8.750416 CGTTGATTTCTAGACACTATTCATGAG 58.250 37.037 0.00 0.00 0.00 2.90
633 1822 9.039870 GTTGATTTCTAGACACTATTCATGAGG 57.960 37.037 0.00 0.00 0.00 3.86
634 1823 8.539117 TGATTTCTAGACACTATTCATGAGGA 57.461 34.615 0.00 0.00 0.00 3.71
635 1824 9.152327 TGATTTCTAGACACTATTCATGAGGAT 57.848 33.333 0.00 0.00 0.00 3.24
636 1825 9.995003 GATTTCTAGACACTATTCATGAGGATT 57.005 33.333 0.00 0.00 0.00 3.01
637 1826 9.995003 ATTTCTAGACACTATTCATGAGGATTC 57.005 33.333 0.00 0.00 0.00 2.52
638 1827 8.539117 TTCTAGACACTATTCATGAGGATTCA 57.461 34.615 0.00 0.00 37.81 2.57
639 1828 8.718158 TCTAGACACTATTCATGAGGATTCAT 57.282 34.615 0.00 0.00 44.87 2.57
649 1838 3.369242 TGAGGATTCATGCATGGTTGA 57.631 42.857 25.97 5.12 0.00 3.18
650 1839 3.905968 TGAGGATTCATGCATGGTTGAT 58.094 40.909 25.97 14.59 0.00 2.57
651 1840 4.283337 TGAGGATTCATGCATGGTTGATT 58.717 39.130 25.97 8.35 0.00 2.57
652 1841 5.447757 TGAGGATTCATGCATGGTTGATTA 58.552 37.500 25.97 2.13 0.00 1.75
653 1842 5.892686 TGAGGATTCATGCATGGTTGATTAA 59.107 36.000 25.97 11.64 0.00 1.40
654 1843 6.380560 TGAGGATTCATGCATGGTTGATTAAA 59.619 34.615 25.97 10.91 0.00 1.52
655 1844 7.093421 TGAGGATTCATGCATGGTTGATTAAAA 60.093 33.333 25.97 10.20 0.00 1.52
656 1845 7.622713 AGGATTCATGCATGGTTGATTAAAAA 58.377 30.769 25.97 9.48 0.00 1.94
676 1865 4.489249 GCAGTTGACATGCATGCC 57.511 55.556 26.53 16.86 43.31 4.40
677 1866 1.888018 GCAGTTGACATGCATGCCT 59.112 52.632 26.53 13.86 43.31 4.75
678 1867 1.097232 GCAGTTGACATGCATGCCTA 58.903 50.000 26.53 10.04 43.31 3.93
679 1868 1.679680 GCAGTTGACATGCATGCCTAT 59.320 47.619 26.53 6.94 43.31 2.57
680 1869 2.100252 GCAGTTGACATGCATGCCTATT 59.900 45.455 26.53 6.62 43.31 1.73
681 1870 3.794475 GCAGTTGACATGCATGCCTATTC 60.794 47.826 26.53 15.97 43.31 1.75
682 1871 3.379057 CAGTTGACATGCATGCCTATTCA 59.621 43.478 26.53 18.36 0.00 2.57
683 1872 4.037565 CAGTTGACATGCATGCCTATTCAT 59.962 41.667 26.53 4.08 0.00 2.57
684 1873 4.037565 AGTTGACATGCATGCCTATTCATG 59.962 41.667 26.53 13.24 44.93 3.07
685 1874 3.822940 TGACATGCATGCCTATTCATGA 58.177 40.909 26.53 0.00 44.94 3.07
686 1875 3.818773 TGACATGCATGCCTATTCATGAG 59.181 43.478 26.53 0.00 44.94 2.90
687 1876 3.154710 ACATGCATGCCTATTCATGAGG 58.845 45.455 26.53 0.00 44.94 3.86
688 1877 3.181437 ACATGCATGCCTATTCATGAGGA 60.181 43.478 26.53 0.00 44.94 3.71
689 1878 3.801307 TGCATGCCTATTCATGAGGAT 57.199 42.857 16.68 0.00 44.94 3.24
690 1879 3.682696 TGCATGCCTATTCATGAGGATC 58.317 45.455 16.68 0.00 44.94 3.36
691 1880 3.015327 GCATGCCTATTCATGAGGATCC 58.985 50.000 6.36 2.48 44.94 3.36
692 1881 3.560668 GCATGCCTATTCATGAGGATCCA 60.561 47.826 15.82 0.00 44.94 3.41
693 1882 4.856509 CATGCCTATTCATGAGGATCCAT 58.143 43.478 15.82 0.00 44.94 3.41
694 1883 4.296621 TGCCTATTCATGAGGATCCATG 57.703 45.455 15.82 10.15 43.88 3.66
695 1884 3.015327 GCCTATTCATGAGGATCCATGC 58.985 50.000 15.82 3.29 42.63 4.06
696 1885 3.560668 GCCTATTCATGAGGATCCATGCA 60.561 47.826 15.82 9.47 42.63 3.96
697 1886 4.856509 CCTATTCATGAGGATCCATGCAT 58.143 43.478 15.82 11.45 42.63 3.96
698 1887 4.640647 CCTATTCATGAGGATCCATGCATG 59.359 45.833 24.86 24.86 42.63 4.06
699 1888 6.382441 CCTATTCATGAGGATCCATGCATGG 61.382 48.000 35.76 35.76 42.63 3.66
700 1889 8.724011 CCTATTCATGAGGATCCATGCATGGT 62.724 46.154 38.18 27.55 42.63 3.55
731 1920 6.468333 AAAATATAGTTGGCATGCATGTCA 57.532 33.333 29.45 29.45 41.25 3.58
732 1921 5.443185 AATATAGTTGGCATGCATGTCAC 57.557 39.130 32.61 25.01 42.90 3.67
733 1922 1.085893 TAGTTGGCATGCATGTCACG 58.914 50.000 32.61 4.92 42.90 4.35
734 1923 1.153978 GTTGGCATGCATGTCACGG 60.154 57.895 32.61 4.10 42.90 4.94
735 1924 1.303155 TTGGCATGCATGTCACGGA 60.303 52.632 32.61 16.64 42.90 4.69
736 1925 0.680601 TTGGCATGCATGTCACGGAT 60.681 50.000 32.61 0.00 42.90 4.18
737 1926 1.096967 TGGCATGCATGTCACGGATC 61.097 55.000 29.45 8.91 37.51 3.36
738 1927 1.650912 GCATGCATGTCACGGATCC 59.349 57.895 26.79 0.00 0.00 3.36
739 1928 1.096967 GCATGCATGTCACGGATCCA 61.097 55.000 26.79 0.00 0.00 3.41
740 1929 0.659427 CATGCATGTCACGGATCCAC 59.341 55.000 18.91 2.89 0.00 4.02
741 1930 0.252761 ATGCATGTCACGGATCCACA 59.747 50.000 13.41 9.29 0.00 4.17
742 1931 0.252761 TGCATGTCACGGATCCACAT 59.747 50.000 13.41 11.34 0.00 3.21
743 1932 0.659427 GCATGTCACGGATCCACATG 59.341 55.000 27.65 27.65 46.86 3.21
744 1933 2.013563 GCATGTCACGGATCCACATGT 61.014 52.381 29.98 13.14 46.17 3.21
745 1934 2.741553 GCATGTCACGGATCCACATGTA 60.742 50.000 29.98 13.81 46.17 2.29
746 1935 3.530535 CATGTCACGGATCCACATGTAA 58.469 45.455 25.29 9.96 41.64 2.41
747 1936 3.904800 TGTCACGGATCCACATGTAAT 57.095 42.857 13.41 0.00 0.00 1.89
748 1937 5.296748 CATGTCACGGATCCACATGTAATA 58.703 41.667 25.29 0.00 41.64 0.98
749 1938 4.944048 TGTCACGGATCCACATGTAATAG 58.056 43.478 13.41 0.00 0.00 1.73
750 1939 4.202212 TGTCACGGATCCACATGTAATAGG 60.202 45.833 13.41 0.00 0.00 2.57
751 1940 4.038763 GTCACGGATCCACATGTAATAGGA 59.961 45.833 13.41 0.75 34.69 2.94
752 1941 4.838423 TCACGGATCCACATGTAATAGGAT 59.162 41.667 13.41 13.74 41.46 3.24
753 1942 4.931601 CACGGATCCACATGTAATAGGATG 59.068 45.833 17.66 8.76 39.61 3.51
754 1943 4.593206 ACGGATCCACATGTAATAGGATGT 59.407 41.667 17.66 9.28 39.61 3.06
755 1944 5.071788 ACGGATCCACATGTAATAGGATGTT 59.928 40.000 17.66 0.00 39.61 2.71
756 1945 6.269077 ACGGATCCACATGTAATAGGATGTTA 59.731 38.462 17.66 0.00 39.61 2.41
757 1946 7.158697 CGGATCCACATGTAATAGGATGTTAA 58.841 38.462 17.66 0.00 39.61 2.01
758 1947 7.659799 CGGATCCACATGTAATAGGATGTTAAA 59.340 37.037 17.66 0.00 39.61 1.52
759 1948 9.520515 GGATCCACATGTAATAGGATGTTAAAT 57.479 33.333 17.66 0.00 39.61 1.40
761 1950 8.601845 TCCACATGTAATAGGATGTTAAATCG 57.398 34.615 0.00 0.00 30.14 3.34
762 1951 8.208224 TCCACATGTAATAGGATGTTAAATCGT 58.792 33.333 0.00 0.00 30.14 3.73
763 1952 9.483916 CCACATGTAATAGGATGTTAAATCGTA 57.516 33.333 0.00 0.00 30.14 3.43
765 1954 9.188588 ACATGTAATAGGATGTTAAATCGTACG 57.811 33.333 9.53 9.53 27.94 3.67
766 1955 9.401873 CATGTAATAGGATGTTAAATCGTACGA 57.598 33.333 21.93 21.93 0.00 3.43
767 1956 8.786937 TGTAATAGGATGTTAAATCGTACGAC 57.213 34.615 22.14 8.69 0.00 4.34
768 1957 8.404765 TGTAATAGGATGTTAAATCGTACGACA 58.595 33.333 22.14 14.62 0.00 4.35
769 1958 9.403110 GTAATAGGATGTTAAATCGTACGACAT 57.597 33.333 22.14 18.85 33.93 3.06
771 1960 9.622004 AATAGGATGTTAAATCGTACGACATAG 57.378 33.333 22.14 0.00 31.59 2.23
772 1961 7.268199 AGGATGTTAAATCGTACGACATAGA 57.732 36.000 22.14 5.50 31.59 1.98
773 1962 7.137426 AGGATGTTAAATCGTACGACATAGAC 58.863 38.462 22.14 15.40 31.59 2.59
774 1963 6.361748 GGATGTTAAATCGTACGACATAGACC 59.638 42.308 22.14 12.64 31.59 3.85
775 1964 6.193514 TGTTAAATCGTACGACATAGACCA 57.806 37.500 22.14 8.77 0.00 4.02
776 1965 6.798482 TGTTAAATCGTACGACATAGACCAT 58.202 36.000 22.14 0.00 0.00 3.55
777 1966 7.929159 TGTTAAATCGTACGACATAGACCATA 58.071 34.615 22.14 0.00 0.00 2.74
778 1967 8.071967 TGTTAAATCGTACGACATAGACCATAG 58.928 37.037 22.14 0.00 0.00 2.23
779 1968 5.624344 AATCGTACGACATAGACCATAGG 57.376 43.478 22.14 0.00 0.00 2.57
780 1969 4.077300 TCGTACGACATAGACCATAGGT 57.923 45.455 15.28 0.00 39.44 3.08
781 1970 4.454678 TCGTACGACATAGACCATAGGTT 58.545 43.478 15.28 0.00 35.25 3.50
782 1971 4.512944 TCGTACGACATAGACCATAGGTTC 59.487 45.833 15.28 0.00 35.25 3.62
783 1972 3.984508 ACGACATAGACCATAGGTTCG 57.015 47.619 5.86 5.86 37.10 3.95
784 1973 2.621998 ACGACATAGACCATAGGTTCGG 59.378 50.000 10.73 0.00 35.89 4.30
785 1974 2.607282 CGACATAGACCATAGGTTCGGC 60.607 54.545 0.00 0.00 35.25 5.54
786 1975 2.628657 GACATAGACCATAGGTTCGGCT 59.371 50.000 0.00 0.00 35.25 5.52
787 1976 2.365617 ACATAGACCATAGGTTCGGCTG 59.634 50.000 0.00 0.00 35.25 4.85
788 1977 2.447408 TAGACCATAGGTTCGGCTGA 57.553 50.000 0.00 0.00 35.25 4.26
789 1978 1.568504 AGACCATAGGTTCGGCTGAA 58.431 50.000 3.13 3.13 35.25 3.02
797 1986 4.713946 TTCGGCTGAACCATGGTC 57.286 55.556 20.07 12.36 39.03 4.02
798 1987 1.002624 TTCGGCTGAACCATGGTCC 60.003 57.895 20.07 14.14 39.03 4.46
799 1988 1.488705 TTCGGCTGAACCATGGTCCT 61.489 55.000 20.07 2.47 39.03 3.85
800 1989 1.746615 CGGCTGAACCATGGTCCTG 60.747 63.158 20.07 11.26 39.03 3.86
801 1990 1.685224 GGCTGAACCATGGTCCTGA 59.315 57.895 20.07 0.00 38.86 3.86
802 1991 0.038166 GGCTGAACCATGGTCCTGAA 59.962 55.000 20.07 1.26 38.86 3.02
803 1992 1.341383 GGCTGAACCATGGTCCTGAAT 60.341 52.381 20.07 0.00 38.86 2.57
804 1993 2.019984 GCTGAACCATGGTCCTGAATC 58.980 52.381 20.07 11.54 0.00 2.52
805 1994 2.618816 GCTGAACCATGGTCCTGAATCA 60.619 50.000 20.07 15.74 0.00 2.57
806 1995 3.276857 CTGAACCATGGTCCTGAATCAG 58.723 50.000 20.07 21.07 0.00 2.90
819 2008 5.320549 CCTGAATCAGGTCTCCAATTTTG 57.679 43.478 20.76 0.00 45.82 2.44
820 2009 5.012239 CCTGAATCAGGTCTCCAATTTTGA 58.988 41.667 20.76 0.00 45.82 2.69
821 2010 5.105997 CCTGAATCAGGTCTCCAATTTTGAC 60.106 44.000 20.76 0.00 45.82 3.18
822 2011 5.384336 TGAATCAGGTCTCCAATTTTGACA 58.616 37.500 0.00 0.00 32.84 3.58
823 2012 6.012113 TGAATCAGGTCTCCAATTTTGACAT 58.988 36.000 0.00 0.00 32.84 3.06
824 2013 6.151648 TGAATCAGGTCTCCAATTTTGACATC 59.848 38.462 0.00 0.00 32.84 3.06
825 2014 5.246981 TCAGGTCTCCAATTTTGACATCT 57.753 39.130 0.00 0.00 32.84 2.90
826 2015 5.248640 TCAGGTCTCCAATTTTGACATCTC 58.751 41.667 0.00 0.00 32.84 2.75
827 2016 5.005740 CAGGTCTCCAATTTTGACATCTCA 58.994 41.667 0.00 0.00 32.84 3.27
828 2017 5.651139 CAGGTCTCCAATTTTGACATCTCAT 59.349 40.000 0.00 0.00 32.84 2.90
829 2018 6.152323 CAGGTCTCCAATTTTGACATCTCATT 59.848 38.462 0.00 0.00 32.84 2.57
830 2019 6.723052 AGGTCTCCAATTTTGACATCTCATTT 59.277 34.615 0.00 0.00 32.84 2.32
831 2020 7.890127 AGGTCTCCAATTTTGACATCTCATTTA 59.110 33.333 0.00 0.00 32.84 1.40
832 2021 8.522830 GGTCTCCAATTTTGACATCTCATTTAA 58.477 33.333 0.00 0.00 32.84 1.52
833 2022 9.912634 GTCTCCAATTTTGACATCTCATTTAAA 57.087 29.630 0.00 0.00 0.00 1.52
869 2154 7.951530 AAATGAGATGTCAAAATGTTGTTCC 57.048 32.000 0.00 0.00 35.88 3.62
870 2155 5.452078 TGAGATGTCAAAATGTTGTTCCC 57.548 39.130 0.00 0.00 36.07 3.97
872 2157 6.303054 TGAGATGTCAAAATGTTGTTCCCTA 58.697 36.000 0.00 0.00 36.07 3.53
873 2158 6.775142 TGAGATGTCAAAATGTTGTTCCCTAA 59.225 34.615 0.00 0.00 36.07 2.69
874 2159 7.286546 TGAGATGTCAAAATGTTGTTCCCTAAA 59.713 33.333 0.00 0.00 36.07 1.85
875 2160 8.193953 AGATGTCAAAATGTTGTTCCCTAAAT 57.806 30.769 0.00 0.00 36.07 1.40
876 2161 9.308000 AGATGTCAAAATGTTGTTCCCTAAATA 57.692 29.630 0.00 0.00 36.07 1.40
879 2164 9.921637 TGTCAAAATGTTGTTCCCTAAATATTC 57.078 29.630 0.00 0.00 36.07 1.75
880 2165 9.921637 GTCAAAATGTTGTTCCCTAAATATTCA 57.078 29.630 0.00 0.00 36.07 2.57
884 2169 9.801873 AAATGTTGTTCCCTAAATATTCATTCG 57.198 29.630 0.00 0.00 0.00 3.34
885 2170 7.931578 TGTTGTTCCCTAAATATTCATTCGT 57.068 32.000 0.00 0.00 0.00 3.85
886 2171 9.621629 ATGTTGTTCCCTAAATATTCATTCGTA 57.378 29.630 0.00 0.00 0.00 3.43
887 2172 8.885722 TGTTGTTCCCTAAATATTCATTCGTAC 58.114 33.333 0.00 0.00 0.00 3.67
888 2173 8.885722 GTTGTTCCCTAAATATTCATTCGTACA 58.114 33.333 0.00 0.00 0.00 2.90
889 2174 9.451002 TTGTTCCCTAAATATTCATTCGTACAA 57.549 29.630 0.00 0.00 0.00 2.41
890 2175 8.885722 TGTTCCCTAAATATTCATTCGTACAAC 58.114 33.333 0.00 0.00 0.00 3.32
891 2176 8.885722 GTTCCCTAAATATTCATTCGTACAACA 58.114 33.333 0.00 0.00 0.00 3.33
892 2177 9.621629 TTCCCTAAATATTCATTCGTACAACAT 57.378 29.630 0.00 0.00 0.00 2.71
893 2178 9.268268 TCCCTAAATATTCATTCGTACAACATC 57.732 33.333 0.00 0.00 0.00 3.06
894 2179 9.273016 CCCTAAATATTCATTCGTACAACATCT 57.727 33.333 0.00 0.00 0.00 2.90
903 2188 8.996024 TCATTCGTACAACATCTCATTTAAGA 57.004 30.769 0.00 0.00 0.00 2.10
948 2241 4.639755 TGCAAACAGTTGATCTTCACTTGA 59.360 37.500 0.00 0.00 36.83 3.02
1178 2500 1.376295 GGTCGGCGTACCCAACAAT 60.376 57.895 6.85 0.00 33.02 2.71
1283 2605 1.379642 GGTACCTCGTCGTCGGGAAT 61.380 60.000 4.06 0.00 40.39 3.01
1382 2704 2.324330 CGGCGCCATCAAAGTCACA 61.324 57.895 28.98 0.00 0.00 3.58
1388 2710 0.950836 CCATCAAAGTCACAACGGCA 59.049 50.000 0.00 0.00 0.00 5.69
1447 2769 2.660552 CGGCGAGTTCACCAACGT 60.661 61.111 0.00 0.00 37.61 3.99
1798 3167 4.278513 CCACGTGGGGAAGGGCAA 62.279 66.667 27.57 0.00 0.00 4.52
1950 3319 4.816385 TCGGCTAGTGAATTTGATTGATCC 59.184 41.667 0.00 0.00 0.00 3.36
1955 3324 5.982890 AGTGAATTTGATTGATCCCGTTT 57.017 34.783 0.00 0.00 0.00 3.60
1962 3339 1.396996 GATTGATCCCGTTTGTGTCCG 59.603 52.381 0.00 0.00 0.00 4.79
1989 3366 1.221414 GCCCACGATCATAGAAGTGC 58.779 55.000 0.00 0.00 33.62 4.40
2001 3379 1.100510 AGAAGTGCATACGCCGACTA 58.899 50.000 0.00 0.00 37.32 2.59
2006 3384 4.252971 AGTGCATACGCCGACTATTAAT 57.747 40.909 0.00 0.00 37.32 1.40
2021 3399 1.080638 TTAATGAGGCCCACCCAAGT 58.919 50.000 0.00 0.00 36.11 3.16
2027 3405 2.203480 GCCCACCCAAGTGCTTGA 60.203 61.111 12.99 0.00 43.09 3.02
2055 3433 5.875359 GGCATCAACTTATATAGTGCCCTAC 59.125 44.000 2.19 0.00 36.63 3.18
2058 3436 7.118390 GCATCAACTTATATAGTGCCCTACTTG 59.882 40.741 0.00 0.00 40.89 3.16
2066 3444 9.650714 TTATATAGTGCCCTACTTGTTCTCTTA 57.349 33.333 0.00 0.00 40.89 2.10
2070 3448 5.998363 AGTGCCCTACTTGTTCTCTTAAAAG 59.002 40.000 0.00 0.00 35.67 2.27
2125 3503 1.415288 GATAACCGCGCGTTGTAGCA 61.415 55.000 29.95 9.48 35.79 3.49
2170 3548 7.327275 TCAATAATATTTGGTTGCGTGAAACAC 59.673 33.333 0.00 0.00 35.74 3.32
2302 3728 8.712285 TGAAACAAGTCTTATATTAAGGGACG 57.288 34.615 0.00 0.00 32.86 4.79
2314 3740 4.796495 GGGACGGGGTGGCATGTC 62.796 72.222 0.00 0.00 0.00 3.06
2316 3742 2.363975 GGACGGGGTGGCATGTCTA 61.364 63.158 0.00 0.00 0.00 2.59
2387 3813 3.463048 AAGGGCATCTTCAAAGTGGAT 57.537 42.857 0.00 0.00 0.00 3.41
2391 3817 2.948315 GGCATCTTCAAAGTGGATCCTC 59.052 50.000 14.23 9.81 0.00 3.71
2406 3832 0.609151 TCCTCAAACCGTCCGCATAA 59.391 50.000 0.00 0.00 0.00 1.90
2412 3838 0.877213 AACCGTCCGCATAATACCGC 60.877 55.000 0.00 0.00 0.00 5.68
2415 3841 0.596600 CGTCCGCATAATACCGCACT 60.597 55.000 0.00 0.00 0.00 4.40
2418 3846 1.682323 TCCGCATAATACCGCACTACA 59.318 47.619 0.00 0.00 0.00 2.74
2424 3852 4.689071 CATAATACCGCACTACAGTCCAA 58.311 43.478 0.00 0.00 0.00 3.53
2435 3863 4.335315 CACTACAGTCCAAATGTGTTGTGT 59.665 41.667 7.74 0.00 40.67 3.72
2438 3866 3.953612 ACAGTCCAAATGTGTTGTGTCAT 59.046 39.130 0.00 0.00 0.00 3.06
2802 4230 2.066340 GACACACCTGATCCACCCA 58.934 57.895 0.00 0.00 0.00 4.51
2809 4238 1.503347 ACCTGATCCACCCAAAAACCT 59.497 47.619 0.00 0.00 0.00 3.50
2817 4246 2.619074 CCACCCAAAAACCTGCCAAAAA 60.619 45.455 0.00 0.00 0.00 1.94
2819 4248 2.307392 ACCCAAAAACCTGCCAAAAACT 59.693 40.909 0.00 0.00 0.00 2.66
2823 4252 4.383010 CCAAAAACCTGCCAAAAACTCTCT 60.383 41.667 0.00 0.00 0.00 3.10
2824 4253 4.391405 AAAACCTGCCAAAAACTCTCTG 57.609 40.909 0.00 0.00 0.00 3.35
2828 4257 2.556114 CCTGCCAAAAACTCTCTGGGAT 60.556 50.000 0.00 0.00 29.41 3.85
2838 4971 0.820226 TCTCTGGGATCGAGCAACTG 59.180 55.000 1.84 0.00 0.00 3.16
2841 4974 1.205655 TCTGGGATCGAGCAACTGAAG 59.794 52.381 1.84 0.00 0.00 3.02
2847 4980 3.589988 GATCGAGCAACTGAAGGAAGAA 58.410 45.455 0.00 0.00 0.00 2.52
2854 4987 4.518211 AGCAACTGAAGGAAGAACTGATTG 59.482 41.667 0.00 0.00 0.00 2.67
2860 4993 6.053632 TGAAGGAAGAACTGATTGAGCATA 57.946 37.500 0.00 0.00 0.00 3.14
2862 4995 6.541278 TGAAGGAAGAACTGATTGAGCATATG 59.459 38.462 0.00 0.00 0.00 1.78
2867 5000 3.939740 ACTGATTGAGCATATGTGGGT 57.060 42.857 4.29 0.00 0.00 4.51
2875 5008 4.013728 TGAGCATATGTGGGTGGTTAAAC 58.986 43.478 4.29 0.00 0.00 2.01
2939 5072 7.807977 ATTAGAACTATCACCGCATTTGAAT 57.192 32.000 0.00 0.00 0.00 2.57
2947 5080 7.915397 ACTATCACCGCATTTGAATATTTGAAC 59.085 33.333 0.00 0.00 0.00 3.18
2970 5104 8.511465 AACTATTGTAAACTATATACACGCCG 57.489 34.615 0.00 0.00 33.22 6.46
2984 5118 0.320421 ACGCCGCTATTTGAGTGTGT 60.320 50.000 0.00 0.00 33.45 3.72
2993 5127 5.523916 CGCTATTTGAGTGTGTAGGCTAAAT 59.476 40.000 0.00 0.00 0.00 1.40
3015 5150 3.765894 TTGGGGCCGGATGTATGCG 62.766 63.158 5.05 0.00 41.50 4.73
3033 5168 1.586422 CGGGTAGCATTGGATGTCTG 58.414 55.000 0.00 0.00 0.00 3.51
3036 5171 1.133976 GGTAGCATTGGATGTCTGGCT 60.134 52.381 0.00 0.00 35.50 4.75
3041 5176 0.615331 ATTGGATGTCTGGCTCACGT 59.385 50.000 0.00 0.00 0.00 4.49
3049 5184 0.173481 TCTGGCTCACGTATCAGTGC 59.827 55.000 0.00 0.00 41.61 4.40
3058 5193 1.898154 GTATCAGTGCCCGTGGACT 59.102 57.895 0.00 0.00 0.00 3.85
3059 5194 0.460284 GTATCAGTGCCCGTGGACTG 60.460 60.000 13.19 13.19 40.89 3.51
3062 5197 3.626924 AGTGCCCGTGGACTGGTC 61.627 66.667 0.00 0.00 0.00 4.02
3074 5209 3.075005 CTGGTCCATCCCGTCCGT 61.075 66.667 0.00 0.00 34.77 4.69
3076 5211 4.157120 GGTCCATCCCGTCCGTGG 62.157 72.222 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 64 9.995003 AGATCAGTCTCATCTTATTGAAATACC 57.005 33.333 0.00 0.00 0.00 2.73
61 71 8.503458 AACCAAAGATCAGTCTCATCTTATTG 57.497 34.615 0.00 0.00 39.27 1.90
63 73 8.428063 CCTAACCAAAGATCAGTCTCATCTTAT 58.572 37.037 0.00 0.00 39.27 1.73
70 80 5.923733 TCTCCTAACCAAAGATCAGTCTC 57.076 43.478 0.00 0.00 32.15 3.36
82 92 1.061546 AAGGCGGTTTCTCCTAACCA 58.938 50.000 6.37 0.00 46.43 3.67
83 93 2.195741 AAAGGCGGTTTCTCCTAACC 57.804 50.000 0.00 0.00 43.37 2.85
87 97 3.263425 TCTGATTAAAGGCGGTTTCTCCT 59.737 43.478 0.00 0.00 0.00 3.69
89 99 4.876107 TGATCTGATTAAAGGCGGTTTCTC 59.124 41.667 0.00 0.00 0.00 2.87
90 100 4.843728 TGATCTGATTAAAGGCGGTTTCT 58.156 39.130 0.00 0.00 0.00 2.52
103 113 7.615582 ACAACGTTGATACAATGATCTGATT 57.384 32.000 33.66 2.72 0.00 2.57
227 237 2.930826 AGATCGGAGGAGAGAGAGAC 57.069 55.000 0.00 0.00 0.00 3.36
317 464 6.094193 TGAAAACATTGACCAATATGCACA 57.906 33.333 0.00 0.00 0.00 4.57
387 850 3.885297 CCAAAAGTCCTTCTTTCTCTGCA 59.115 43.478 0.00 0.00 44.50 4.41
388 851 3.254411 CCCAAAAGTCCTTCTTTCTCTGC 59.746 47.826 0.00 0.00 44.50 4.26
397 860 4.746535 TTTTGTTCCCCAAAAGTCCTTC 57.253 40.909 0.00 0.00 45.68 3.46
408 871 9.244292 AGTAGAAGATAAATCTTTTTGTTCCCC 57.756 33.333 6.66 0.00 46.47 4.81
413 878 9.674068 GAGGGAGTAGAAGATAAATCTTTTTGT 57.326 33.333 6.66 0.00 46.47 2.83
414 879 9.114952 GGAGGGAGTAGAAGATAAATCTTTTTG 57.885 37.037 6.66 0.00 46.47 2.44
435 1099 4.683400 GCATGTATATTATGGGACGGAGGG 60.683 50.000 0.00 0.00 0.00 4.30
443 1107 9.797556 CATTTTGATCTGCATGTATATTATGGG 57.202 33.333 0.00 0.00 0.00 4.00
453 1117 6.330004 TGTACAACATTTTGATCTGCATGT 57.670 33.333 0.00 0.00 36.48 3.21
454 1118 6.254804 CCATGTACAACATTTTGATCTGCATG 59.745 38.462 0.00 2.38 36.53 4.06
455 1119 6.334989 CCATGTACAACATTTTGATCTGCAT 58.665 36.000 0.00 0.00 36.53 3.96
456 1120 5.712004 CCATGTACAACATTTTGATCTGCA 58.288 37.500 0.00 0.00 36.53 4.41
459 1123 5.981088 TGCCATGTACAACATTTTGATCT 57.019 34.783 0.00 0.00 36.53 2.75
460 1124 7.037438 AGAATGCCATGTACAACATTTTGATC 58.963 34.615 17.88 9.16 36.53 2.92
461 1125 6.938507 AGAATGCCATGTACAACATTTTGAT 58.061 32.000 17.88 7.27 36.53 2.57
463 1127 8.706492 ATAAGAATGCCATGTACAACATTTTG 57.294 30.769 17.88 4.69 36.53 2.44
477 1141 9.012954 TCCATCCCATAATATATAAGAATGCCA 57.987 33.333 0.00 0.00 0.00 4.92
478 1142 9.512588 CTCCATCCCATAATATATAAGAATGCC 57.487 37.037 0.00 0.00 0.00 4.40
479 1143 9.512588 CCTCCATCCCATAATATATAAGAATGC 57.487 37.037 0.00 0.00 0.00 3.56
481 1145 9.989794 TCCCTCCATCCCATAATATATAAGAAT 57.010 33.333 0.00 0.00 0.00 2.40
482 1146 9.452517 CTCCCTCCATCCCATAATATATAAGAA 57.547 37.037 0.00 0.00 0.00 2.52
484 1148 8.805145 ACTCCCTCCATCCCATAATATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
496 1192 8.432805 CAACATAATATATACTCCCTCCATCCC 58.567 40.741 0.00 0.00 0.00 3.85
497 1193 8.993424 ACAACATAATATATACTCCCTCCATCC 58.007 37.037 0.00 0.00 0.00 3.51
500 1196 9.831682 TGTACAACATAATATATACTCCCTCCA 57.168 33.333 0.00 0.00 0.00 3.86
519 1218 9.391006 TGTTCCCTAAATATTCATCTGTACAAC 57.609 33.333 0.00 0.00 0.00 3.32
555 1744 5.524284 TGGTTCCGTACAACATTTTCATTG 58.476 37.500 0.00 0.00 0.00 2.82
557 1746 5.336372 CCATGGTTCCGTACAACATTTTCAT 60.336 40.000 2.57 0.00 0.00 2.57
558 1747 4.022762 CCATGGTTCCGTACAACATTTTCA 60.023 41.667 2.57 0.00 0.00 2.69
559 1748 4.022676 ACCATGGTTCCGTACAACATTTTC 60.023 41.667 13.00 0.00 0.00 2.29
560 1749 3.892588 ACCATGGTTCCGTACAACATTTT 59.107 39.130 13.00 0.00 0.00 1.82
561 1750 3.492337 ACCATGGTTCCGTACAACATTT 58.508 40.909 13.00 0.00 0.00 2.32
562 1751 3.149005 ACCATGGTTCCGTACAACATT 57.851 42.857 13.00 0.00 0.00 2.71
563 1752 2.871096 ACCATGGTTCCGTACAACAT 57.129 45.000 13.00 0.00 0.00 2.71
564 1753 2.496111 GAACCATGGTTCCGTACAACA 58.504 47.619 37.55 0.00 46.21 3.33
582 1771 1.214589 GAGCGTAGGTTCGGCTGAA 59.785 57.895 3.13 3.13 39.88 3.02
583 1772 2.882876 GAGCGTAGGTTCGGCTGA 59.117 61.111 0.00 0.00 39.88 4.26
584 1773 2.579787 CGAGCGTAGGTTCGGCTG 60.580 66.667 13.05 0.00 42.33 4.85
585 1774 2.749044 TCGAGCGTAGGTTCGGCT 60.749 61.111 19.24 0.00 45.52 5.52
586 1775 2.578981 GTCGAGCGTAGGTTCGGC 60.579 66.667 19.24 15.13 45.52 5.54
587 1776 1.513586 GTGTCGAGCGTAGGTTCGG 60.514 63.158 19.24 3.89 45.52 4.30
588 1777 1.513586 GGTGTCGAGCGTAGGTTCG 60.514 63.158 14.47 14.47 46.64 3.95
589 1778 1.513586 CGGTGTCGAGCGTAGGTTC 60.514 63.158 0.00 0.00 39.88 3.62
590 1779 2.564975 CGGTGTCGAGCGTAGGTT 59.435 61.111 0.00 0.00 39.88 3.50
597 1786 1.429463 AGAAATCAACGGTGTCGAGC 58.571 50.000 0.00 0.00 40.11 5.03
598 1787 3.852536 GTCTAGAAATCAACGGTGTCGAG 59.147 47.826 0.00 0.00 40.11 4.04
599 1788 3.253921 TGTCTAGAAATCAACGGTGTCGA 59.746 43.478 0.00 0.00 40.11 4.20
600 1789 3.364023 GTGTCTAGAAATCAACGGTGTCG 59.636 47.826 0.00 0.00 43.02 4.35
601 1790 4.557205 AGTGTCTAGAAATCAACGGTGTC 58.443 43.478 0.00 0.00 0.00 3.67
602 1791 4.602340 AGTGTCTAGAAATCAACGGTGT 57.398 40.909 0.00 0.00 0.00 4.16
603 1792 6.811665 TGAATAGTGTCTAGAAATCAACGGTG 59.188 38.462 0.00 0.00 0.00 4.94
604 1793 6.931838 TGAATAGTGTCTAGAAATCAACGGT 58.068 36.000 0.00 0.00 0.00 4.83
605 1794 7.706607 TCATGAATAGTGTCTAGAAATCAACGG 59.293 37.037 0.00 0.00 0.00 4.44
606 1795 8.634475 TCATGAATAGTGTCTAGAAATCAACG 57.366 34.615 0.00 0.00 0.00 4.10
607 1796 9.039870 CCTCATGAATAGTGTCTAGAAATCAAC 57.960 37.037 0.00 0.00 0.00 3.18
608 1797 8.981659 TCCTCATGAATAGTGTCTAGAAATCAA 58.018 33.333 0.00 0.00 0.00 2.57
609 1798 8.539117 TCCTCATGAATAGTGTCTAGAAATCA 57.461 34.615 0.00 0.00 0.00 2.57
610 1799 9.995003 AATCCTCATGAATAGTGTCTAGAAATC 57.005 33.333 0.00 0.00 0.00 2.17
611 1800 9.995003 GAATCCTCATGAATAGTGTCTAGAAAT 57.005 33.333 0.00 0.00 0.00 2.17
612 1801 8.981659 TGAATCCTCATGAATAGTGTCTAGAAA 58.018 33.333 0.00 0.00 0.00 2.52
613 1802 8.539117 TGAATCCTCATGAATAGTGTCTAGAA 57.461 34.615 0.00 0.00 0.00 2.10
614 1803 8.718158 ATGAATCCTCATGAATAGTGTCTAGA 57.282 34.615 0.00 0.00 40.94 2.43
628 1817 3.905968 TCAACCATGCATGAATCCTCAT 58.094 40.909 28.31 1.87 43.40 2.90
629 1818 3.369242 TCAACCATGCATGAATCCTCA 57.631 42.857 28.31 2.10 35.56 3.86
630 1819 4.931661 AATCAACCATGCATGAATCCTC 57.068 40.909 28.31 0.00 0.00 3.71
631 1820 6.795144 TTTAATCAACCATGCATGAATCCT 57.205 33.333 28.31 9.88 0.00 3.24
632 1821 7.846644 TTTTTAATCAACCATGCATGAATCC 57.153 32.000 28.31 0.00 0.00 3.01
659 1848 1.097232 TAGGCATGCATGTCAACTGC 58.903 50.000 31.47 15.51 40.10 4.40
660 1849 3.379057 TGAATAGGCATGCATGTCAACTG 59.621 43.478 31.47 5.39 34.11 3.16
661 1850 3.623703 TGAATAGGCATGCATGTCAACT 58.376 40.909 31.47 22.36 34.11 3.16
662 1851 4.037089 TCATGAATAGGCATGCATGTCAAC 59.963 41.667 31.47 18.86 45.35 3.18
663 1852 4.208746 TCATGAATAGGCATGCATGTCAA 58.791 39.130 31.47 15.50 45.35 3.18
664 1853 3.818773 CTCATGAATAGGCATGCATGTCA 59.181 43.478 31.47 23.40 45.35 3.58
665 1854 3.190744 CCTCATGAATAGGCATGCATGTC 59.809 47.826 23.79 23.79 45.35 3.06
666 1855 3.154710 CCTCATGAATAGGCATGCATGT 58.845 45.455 26.79 8.16 45.35 3.21
667 1856 3.418047 TCCTCATGAATAGGCATGCATG 58.582 45.455 22.70 22.70 46.18 4.06
668 1857 3.801307 TCCTCATGAATAGGCATGCAT 57.199 42.857 21.36 16.31 44.08 3.96
669 1858 3.560668 GGATCCTCATGAATAGGCATGCA 60.561 47.826 21.36 0.00 44.08 3.96
670 1859 3.015327 GGATCCTCATGAATAGGCATGC 58.985 50.000 9.90 9.90 44.08 4.06
671 1860 4.296621 TGGATCCTCATGAATAGGCATG 57.703 45.455 14.23 0.00 45.41 4.06
672 1861 4.856509 CATGGATCCTCATGAATAGGCAT 58.143 43.478 14.23 0.00 45.30 4.40
673 1862 3.560668 GCATGGATCCTCATGAATAGGCA 60.561 47.826 14.23 0.00 45.30 4.75
674 1863 3.015327 GCATGGATCCTCATGAATAGGC 58.985 50.000 14.23 0.00 45.30 3.93
675 1864 4.296621 TGCATGGATCCTCATGAATAGG 57.703 45.455 14.23 0.00 45.30 2.57
676 1865 5.819825 CATGCATGGATCCTCATGAATAG 57.180 43.478 24.98 10.24 45.30 1.73
707 1896 6.757947 GTGACATGCATGCCAACTATATTTTT 59.242 34.615 26.53 1.19 0.00 1.94
708 1897 6.275335 GTGACATGCATGCCAACTATATTTT 58.725 36.000 26.53 1.67 0.00 1.82
709 1898 5.506151 CGTGACATGCATGCCAACTATATTT 60.506 40.000 26.53 1.90 0.00 1.40
710 1899 4.023792 CGTGACATGCATGCCAACTATATT 60.024 41.667 26.53 2.47 0.00 1.28
711 1900 3.499537 CGTGACATGCATGCCAACTATAT 59.500 43.478 26.53 3.28 0.00 0.86
712 1901 2.871633 CGTGACATGCATGCCAACTATA 59.128 45.455 26.53 0.00 0.00 1.31
713 1902 1.672363 CGTGACATGCATGCCAACTAT 59.328 47.619 26.53 4.90 0.00 2.12
714 1903 1.085893 CGTGACATGCATGCCAACTA 58.914 50.000 26.53 3.98 0.00 2.24
715 1904 1.588824 CCGTGACATGCATGCCAACT 61.589 55.000 26.53 6.52 31.94 3.16
716 1905 1.153978 CCGTGACATGCATGCCAAC 60.154 57.895 26.53 19.29 31.94 3.77
717 1906 0.680601 ATCCGTGACATGCATGCCAA 60.681 50.000 26.53 7.48 31.94 4.52
718 1907 1.077572 ATCCGTGACATGCATGCCA 60.078 52.632 26.53 19.63 31.94 4.92
719 1908 1.650912 GATCCGTGACATGCATGCC 59.349 57.895 26.53 16.86 31.94 4.40
720 1909 1.096967 TGGATCCGTGACATGCATGC 61.097 55.000 26.53 18.59 31.94 4.06
721 1910 0.659427 GTGGATCCGTGACATGCATG 59.341 55.000 25.09 25.09 0.00 4.06
722 1911 0.252761 TGTGGATCCGTGACATGCAT 59.747 50.000 7.39 0.00 0.00 3.96
723 1912 0.252761 ATGTGGATCCGTGACATGCA 59.747 50.000 13.87 0.00 0.00 3.96
724 1913 0.659427 CATGTGGATCCGTGACATGC 59.341 55.000 23.41 2.75 40.27 4.06
726 1915 3.904800 TTACATGTGGATCCGTGACAT 57.095 42.857 9.11 13.00 0.00 3.06
727 1916 3.904800 ATTACATGTGGATCCGTGACA 57.095 42.857 9.11 11.39 0.00 3.58
728 1917 4.038763 TCCTATTACATGTGGATCCGTGAC 59.961 45.833 9.11 6.23 0.00 3.67
729 1918 4.219919 TCCTATTACATGTGGATCCGTGA 58.780 43.478 9.11 2.15 0.00 4.35
730 1919 4.600692 TCCTATTACATGTGGATCCGTG 57.399 45.455 9.11 8.57 0.00 4.94
731 1920 4.593206 ACATCCTATTACATGTGGATCCGT 59.407 41.667 9.11 4.56 37.22 4.69
732 1921 5.152623 ACATCCTATTACATGTGGATCCG 57.847 43.478 9.11 3.95 37.22 4.18
733 1922 8.918202 TTTAACATCCTATTACATGTGGATCC 57.082 34.615 9.11 4.20 37.22 3.36
735 1924 9.219603 CGATTTAACATCCTATTACATGTGGAT 57.780 33.333 9.11 9.13 39.64 3.41
736 1925 8.208224 ACGATTTAACATCCTATTACATGTGGA 58.792 33.333 9.11 6.87 33.38 4.02
737 1926 8.378172 ACGATTTAACATCCTATTACATGTGG 57.622 34.615 9.11 0.37 33.38 4.17
739 1928 9.188588 CGTACGATTTAACATCCTATTACATGT 57.811 33.333 10.44 2.69 34.58 3.21
740 1929 9.401873 TCGTACGATTTAACATCCTATTACATG 57.598 33.333 15.28 0.00 0.00 3.21
741 1930 9.403110 GTCGTACGATTTAACATCCTATTACAT 57.597 33.333 22.57 0.00 0.00 2.29
742 1931 8.404765 TGTCGTACGATTTAACATCCTATTACA 58.595 33.333 22.57 5.83 0.00 2.41
743 1932 8.786937 TGTCGTACGATTTAACATCCTATTAC 57.213 34.615 22.57 3.06 0.00 1.89
745 1934 9.622004 CTATGTCGTACGATTTAACATCCTATT 57.378 33.333 22.57 1.40 33.01 1.73
746 1935 9.006839 TCTATGTCGTACGATTTAACATCCTAT 57.993 33.333 22.57 2.10 33.01 2.57
747 1936 8.285394 GTCTATGTCGTACGATTTAACATCCTA 58.715 37.037 22.57 4.76 33.01 2.94
748 1937 7.137426 GTCTATGTCGTACGATTTAACATCCT 58.863 38.462 22.57 2.81 33.01 3.24
749 1938 6.361748 GGTCTATGTCGTACGATTTAACATCC 59.638 42.308 22.57 12.98 33.01 3.51
750 1939 6.914215 TGGTCTATGTCGTACGATTTAACATC 59.086 38.462 22.57 6.27 33.01 3.06
751 1940 6.798482 TGGTCTATGTCGTACGATTTAACAT 58.202 36.000 22.57 20.63 35.00 2.71
752 1941 6.193514 TGGTCTATGTCGTACGATTTAACA 57.806 37.500 22.57 14.99 0.00 2.41
753 1942 7.536622 CCTATGGTCTATGTCGTACGATTTAAC 59.463 40.741 22.57 15.09 0.00 2.01
754 1943 7.229306 ACCTATGGTCTATGTCGTACGATTTAA 59.771 37.037 22.57 8.24 0.00 1.52
755 1944 6.712095 ACCTATGGTCTATGTCGTACGATTTA 59.288 38.462 22.57 14.46 0.00 1.40
756 1945 5.533903 ACCTATGGTCTATGTCGTACGATTT 59.466 40.000 22.57 14.09 0.00 2.17
757 1946 5.068636 ACCTATGGTCTATGTCGTACGATT 58.931 41.667 22.57 14.45 0.00 3.34
758 1947 4.649692 ACCTATGGTCTATGTCGTACGAT 58.350 43.478 22.57 9.06 0.00 3.73
759 1948 4.077300 ACCTATGGTCTATGTCGTACGA 57.923 45.455 15.28 15.28 0.00 3.43
760 1949 4.610007 CGAACCTATGGTCTATGTCGTACG 60.610 50.000 9.53 9.53 33.12 3.67
761 1950 4.320057 CCGAACCTATGGTCTATGTCGTAC 60.320 50.000 6.91 0.00 33.12 3.67
762 1951 3.817084 CCGAACCTATGGTCTATGTCGTA 59.183 47.826 6.91 0.00 33.12 3.43
763 1952 2.621998 CCGAACCTATGGTCTATGTCGT 59.378 50.000 6.91 0.00 33.12 4.34
764 1953 2.607282 GCCGAACCTATGGTCTATGTCG 60.607 54.545 0.00 0.00 33.12 4.35
765 1954 2.628657 AGCCGAACCTATGGTCTATGTC 59.371 50.000 0.00 0.00 33.12 3.06
766 1955 2.365617 CAGCCGAACCTATGGTCTATGT 59.634 50.000 0.00 0.00 33.12 2.29
767 1956 2.628178 TCAGCCGAACCTATGGTCTATG 59.372 50.000 0.00 0.00 33.12 2.23
768 1957 2.958818 TCAGCCGAACCTATGGTCTAT 58.041 47.619 0.00 0.00 33.12 1.98
769 1958 2.429610 GTTCAGCCGAACCTATGGTCTA 59.570 50.000 1.04 0.00 44.92 2.59
770 1959 1.207329 GTTCAGCCGAACCTATGGTCT 59.793 52.381 1.04 0.00 44.92 3.85
771 1960 1.653151 GTTCAGCCGAACCTATGGTC 58.347 55.000 1.04 0.00 44.92 4.02
772 1961 3.855159 GTTCAGCCGAACCTATGGT 57.145 52.632 1.04 0.00 44.92 3.55
780 1969 1.002624 GGACCATGGTTCAGCCGAA 60.003 57.895 20.85 0.00 41.21 4.30
781 1970 1.918293 AGGACCATGGTTCAGCCGA 60.918 57.895 25.54 0.00 41.21 5.54
782 1971 1.746615 CAGGACCATGGTTCAGCCG 60.747 63.158 25.54 10.97 41.21 5.52
783 1972 0.038166 TTCAGGACCATGGTTCAGCC 59.962 55.000 25.54 18.22 37.90 4.85
784 1973 2.019984 GATTCAGGACCATGGTTCAGC 58.980 52.381 25.54 9.37 0.00 4.26
785 1974 3.276857 CTGATTCAGGACCATGGTTCAG 58.723 50.000 25.54 23.31 0.00 3.02
786 1975 3.354948 CTGATTCAGGACCATGGTTCA 57.645 47.619 25.54 18.54 0.00 3.18
798 1987 5.474532 TGTCAAAATTGGAGACCTGATTCAG 59.525 40.000 6.70 6.70 0.00 3.02
799 1988 5.384336 TGTCAAAATTGGAGACCTGATTCA 58.616 37.500 0.00 0.00 0.00 2.57
800 1989 5.964958 TGTCAAAATTGGAGACCTGATTC 57.035 39.130 0.00 0.00 0.00 2.52
801 1990 6.251471 AGATGTCAAAATTGGAGACCTGATT 58.749 36.000 0.00 0.00 0.00 2.57
802 1991 5.824421 AGATGTCAAAATTGGAGACCTGAT 58.176 37.500 0.00 0.00 0.00 2.90
803 1992 5.221904 TGAGATGTCAAAATTGGAGACCTGA 60.222 40.000 0.00 0.00 0.00 3.86
804 1993 5.005740 TGAGATGTCAAAATTGGAGACCTG 58.994 41.667 0.00 0.00 0.00 4.00
805 1994 5.246981 TGAGATGTCAAAATTGGAGACCT 57.753 39.130 0.00 0.00 0.00 3.85
806 1995 6.521151 AATGAGATGTCAAAATTGGAGACC 57.479 37.500 0.00 0.00 35.88 3.85
807 1996 9.912634 TTTAAATGAGATGTCAAAATTGGAGAC 57.087 29.630 0.00 0.00 35.88 3.36
849 2134 5.712152 AGGGAACAACATTTTGACATCTC 57.288 39.130 0.00 0.00 36.48 2.75
850 2135 7.595819 TTTAGGGAACAACATTTTGACATCT 57.404 32.000 0.00 0.00 36.48 2.90
854 2139 9.921637 TGAATATTTAGGGAACAACATTTTGAC 57.078 29.630 0.00 0.00 36.48 3.18
858 2143 9.801873 CGAATGAATATTTAGGGAACAACATTT 57.198 29.630 0.00 0.00 0.00 2.32
861 2146 7.931578 ACGAATGAATATTTAGGGAACAACA 57.068 32.000 0.00 0.00 0.00 3.33
867 2152 9.268268 GATGTTGTACGAATGAATATTTAGGGA 57.732 33.333 0.00 0.00 0.00 4.20
868 2153 9.273016 AGATGTTGTACGAATGAATATTTAGGG 57.727 33.333 0.00 0.00 0.00 3.53
877 2162 9.430623 TCTTAAATGAGATGTTGTACGAATGAA 57.569 29.630 0.00 0.00 0.00 2.57
878 2163 8.996024 TCTTAAATGAGATGTTGTACGAATGA 57.004 30.769 0.00 0.00 0.00 2.57
881 2166 9.872757 GTTTTCTTAAATGAGATGTTGTACGAA 57.127 29.630 0.00 0.00 0.00 3.85
882 2167 8.500773 GGTTTTCTTAAATGAGATGTTGTACGA 58.499 33.333 0.00 0.00 0.00 3.43
883 2168 7.749126 GGGTTTTCTTAAATGAGATGTTGTACG 59.251 37.037 0.00 0.00 0.00 3.67
884 2169 8.793592 AGGGTTTTCTTAAATGAGATGTTGTAC 58.206 33.333 0.00 0.00 0.00 2.90
885 2170 8.934023 AGGGTTTTCTTAAATGAGATGTTGTA 57.066 30.769 0.00 0.00 0.00 2.41
886 2171 7.839680 AGGGTTTTCTTAAATGAGATGTTGT 57.160 32.000 0.00 0.00 0.00 3.32
887 2172 8.359642 TGAAGGGTTTTCTTAAATGAGATGTTG 58.640 33.333 0.00 0.00 0.00 3.33
888 2173 8.477419 TGAAGGGTTTTCTTAAATGAGATGTT 57.523 30.769 0.00 0.00 0.00 2.71
889 2174 8.526147 CATGAAGGGTTTTCTTAAATGAGATGT 58.474 33.333 0.00 0.00 0.00 3.06
890 2175 8.526147 ACATGAAGGGTTTTCTTAAATGAGATG 58.474 33.333 0.00 0.00 31.10 2.90
891 2176 8.526147 CACATGAAGGGTTTTCTTAAATGAGAT 58.474 33.333 0.00 0.00 31.10 2.75
892 2177 7.505585 ACACATGAAGGGTTTTCTTAAATGAGA 59.494 33.333 0.00 0.00 31.10 3.27
893 2178 7.661040 ACACATGAAGGGTTTTCTTAAATGAG 58.339 34.615 0.00 0.00 31.10 2.90
894 2179 7.595819 ACACATGAAGGGTTTTCTTAAATGA 57.404 32.000 0.00 0.00 31.10 2.57
895 2180 9.357652 CATACACATGAAGGGTTTTCTTAAATG 57.642 33.333 0.00 0.00 34.16 2.32
896 2181 9.088987 ACATACACATGAAGGGTTTTCTTAAAT 57.911 29.630 0.00 0.00 34.16 1.40
903 2188 5.183140 GCAGTACATACACATGAAGGGTTTT 59.817 40.000 0.00 0.00 34.16 2.43
948 2241 4.475016 AGGAGCAGGTGTCAATTATAACCT 59.525 41.667 0.42 0.42 43.92 3.50
1382 2704 2.186826 GGCCTGCGATATTGCCGTT 61.187 57.895 12.54 0.00 33.59 4.44
1388 2710 0.603707 CGATGGTGGCCTGCGATATT 60.604 55.000 3.32 0.00 0.00 1.28
1600 2925 0.173481 GTAACCGTACTTCCCGTCCC 59.827 60.000 0.00 0.00 0.00 4.46
1950 3319 2.631428 CTGCACGGACACAAACGG 59.369 61.111 0.00 0.00 0.00 4.44
1981 3358 1.100510 AGTCGGCGTATGCACTTCTA 58.899 50.000 9.59 0.00 45.35 2.10
1989 3366 3.612860 GCCTCATTAATAGTCGGCGTATG 59.387 47.826 6.85 1.32 0.00 2.39
2001 3379 1.645919 ACTTGGGTGGGCCTCATTAAT 59.354 47.619 4.53 0.00 34.45 1.40
2006 3384 4.284550 GCACTTGGGTGGGCCTCA 62.285 66.667 4.53 0.00 43.18 3.86
2021 3399 1.927487 AGTTGATGCCCATTCAAGCA 58.073 45.000 0.00 0.00 44.45 3.91
2027 3405 5.711976 GGCACTATATAAGTTGATGCCCATT 59.288 40.000 0.77 0.00 37.51 3.16
2066 3444 7.041848 GCACAAGCTCACCAATTTAATTCTTTT 60.042 33.333 0.00 0.00 37.91 2.27
2070 3448 5.768333 GCACAAGCTCACCAATTTAATTC 57.232 39.130 0.00 0.00 37.91 2.17
2302 3728 3.100545 CATGTAGACATGCCACCCC 57.899 57.895 9.59 0.00 45.92 4.95
2361 3787 4.761739 CACTTTGAAGATGCCCTTAGTTGA 59.238 41.667 0.00 0.00 34.68 3.18
2387 3813 0.609151 TTATGCGGACGGTTTGAGGA 59.391 50.000 0.00 0.00 0.00 3.71
2391 3817 1.259507 CGGTATTATGCGGACGGTTTG 59.740 52.381 0.00 0.00 0.00 2.93
2406 3832 3.055385 ACATTTGGACTGTAGTGCGGTAT 60.055 43.478 0.00 0.00 39.39 2.73
2412 3838 4.335315 ACACAACACATTTGGACTGTAGTG 59.665 41.667 0.00 0.00 33.22 2.74
2415 3841 4.518249 TGACACAACACATTTGGACTGTA 58.482 39.130 0.00 0.00 0.00 2.74
2418 3846 3.569701 GGATGACACAACACATTTGGACT 59.430 43.478 0.00 0.00 0.00 3.85
2789 4217 1.503347 AGGTTTTTGGGTGGATCAGGT 59.497 47.619 0.00 0.00 0.00 4.00
2792 4220 1.337118 GCAGGTTTTTGGGTGGATCA 58.663 50.000 0.00 0.00 0.00 2.92
2794 4222 0.105246 TGGCAGGTTTTTGGGTGGAT 60.105 50.000 0.00 0.00 0.00 3.41
2802 4230 4.383010 CCAGAGAGTTTTTGGCAGGTTTTT 60.383 41.667 0.00 0.00 0.00 1.94
2809 4238 2.795329 GATCCCAGAGAGTTTTTGGCA 58.205 47.619 0.00 0.00 0.00 4.92
2817 4246 0.820871 GTTGCTCGATCCCAGAGAGT 59.179 55.000 0.75 0.00 37.93 3.24
2819 4248 0.820226 CAGTTGCTCGATCCCAGAGA 59.180 55.000 0.75 0.00 37.93 3.10
2823 4252 0.250234 CCTTCAGTTGCTCGATCCCA 59.750 55.000 0.00 0.00 0.00 4.37
2824 4253 0.537188 TCCTTCAGTTGCTCGATCCC 59.463 55.000 0.00 0.00 0.00 3.85
2828 4257 2.365617 AGTTCTTCCTTCAGTTGCTCGA 59.634 45.455 0.00 0.00 0.00 4.04
2838 4971 6.541641 ACATATGCTCAATCAGTTCTTCCTTC 59.458 38.462 1.58 0.00 0.00 3.46
2841 4974 5.008415 CCACATATGCTCAATCAGTTCTTCC 59.992 44.000 1.58 0.00 0.00 3.46
2847 4980 3.548770 CACCCACATATGCTCAATCAGT 58.451 45.455 1.58 0.00 0.00 3.41
2854 4987 3.064820 CGTTTAACCACCCACATATGCTC 59.935 47.826 1.58 0.00 0.00 4.26
2860 4993 0.772384 TCCCGTTTAACCACCCACAT 59.228 50.000 0.00 0.00 0.00 3.21
2862 4995 0.179023 TGTCCCGTTTAACCACCCAC 60.179 55.000 0.00 0.00 0.00 4.61
2867 5000 3.288964 ACATTGTTGTCCCGTTTAACCA 58.711 40.909 0.00 0.00 0.00 3.67
2875 5008 2.357637 ACACTCAAACATTGTTGTCCCG 59.642 45.455 2.13 0.00 34.06 5.14
2918 5051 7.807977 AATATTCAAATGCGGTGATAGTTCT 57.192 32.000 0.00 0.00 0.00 3.01
2924 5057 6.866480 AGTTCAAATATTCAAATGCGGTGAT 58.134 32.000 0.00 0.00 0.00 3.06
2925 5058 6.266168 AGTTCAAATATTCAAATGCGGTGA 57.734 33.333 0.00 0.00 0.00 4.02
2947 5080 6.805271 AGCGGCGTGTATATAGTTTACAATAG 59.195 38.462 9.37 0.00 31.72 1.73
2964 5098 0.095245 CACACTCAAATAGCGGCGTG 59.905 55.000 9.37 0.00 0.00 5.34
2966 5100 1.588404 CTACACACTCAAATAGCGGCG 59.412 52.381 0.51 0.51 0.00 6.46
2970 5104 6.927294 ATTTAGCCTACACACTCAAATAGC 57.073 37.500 0.00 0.00 0.00 2.97
2984 5118 3.492337 CGGCCCCAATTTATTTAGCCTA 58.508 45.455 0.00 0.00 36.76 3.93
2993 5127 2.870175 CATACATCCGGCCCCAATTTA 58.130 47.619 0.00 0.00 0.00 1.40
3015 5150 1.972872 CCAGACATCCAATGCTACCC 58.027 55.000 0.00 0.00 0.00 3.69
3030 5165 0.173481 GCACTGATACGTGAGCCAGA 59.827 55.000 0.00 0.00 37.06 3.86
3032 5167 1.218047 GGCACTGATACGTGAGCCA 59.782 57.895 0.00 0.00 39.24 4.75
3033 5168 1.521681 GGGCACTGATACGTGAGCC 60.522 63.158 0.00 0.15 38.82 4.70
3036 5171 3.689414 ACGGGCACTGATACGTGA 58.311 55.556 0.00 0.00 38.24 4.35
3041 5176 1.613317 CCAGTCCACGGGCACTGATA 61.613 60.000 11.23 0.00 42.37 2.15
3058 5193 3.387091 CACGGACGGGATGGACCA 61.387 66.667 0.00 0.00 41.20 4.02
3059 5194 4.157120 CCACGGACGGGATGGACC 62.157 72.222 0.00 0.00 35.33 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.