Multiple sequence alignment - TraesCS3B01G531000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G531000 chr3B 100.000 7023 0 0 1 7023 771845991 771838969 0.000000e+00 12970.0
1 TraesCS3B01G531000 chr3B 96.119 5360 130 15 1671 7011 772227341 772222041 0.000000e+00 8674.0
2 TraesCS3B01G531000 chr3B 90.281 1883 133 22 4074 5929 772253558 772251699 0.000000e+00 2418.0
3 TraesCS3B01G531000 chr3B 89.538 1883 135 22 4071 5929 772182768 772180924 0.000000e+00 2329.0
4 TraesCS3B01G531000 chr3B 83.644 1504 201 26 2466 3959 772184816 772183348 0.000000e+00 1373.0
5 TraesCS3B01G531000 chr3B 83.289 1508 201 25 2466 3959 772255942 772254472 0.000000e+00 1341.0
6 TraesCS3B01G531000 chr3B 83.145 1507 194 30 2466 3959 772170397 772168938 0.000000e+00 1321.0
7 TraesCS3B01G531000 chr3B 89.195 870 66 10 5080 5930 772161881 772161021 0.000000e+00 1061.0
8 TraesCS3B01G531000 chr3B 93.023 688 35 10 997 1676 772230365 772229683 0.000000e+00 992.0
9 TraesCS3B01G531000 chr3B 82.718 1030 154 17 2531 3551 742664833 742665847 0.000000e+00 894.0
10 TraesCS3B01G531000 chr3B 97.912 479 7 3 1 476 771855150 771854672 0.000000e+00 826.0
11 TraesCS3B01G531000 chr3B 98.000 450 8 1 1 449 771863583 771863134 0.000000e+00 780.0
12 TraesCS3B01G531000 chr3B 98.000 450 8 1 1 449 771867633 771867184 0.000000e+00 780.0
13 TraesCS3B01G531000 chr3B 97.778 450 9 1 1 449 771871687 771871238 0.000000e+00 774.0
14 TraesCS3B01G531000 chr3B 94.759 477 19 4 1 475 321045433 321044961 0.000000e+00 737.0
15 TraesCS3B01G531000 chr3B 94.351 478 21 4 1 476 292845106 292844633 0.000000e+00 728.0
16 TraesCS3B01G531000 chr3B 94.340 477 21 4 1 475 289384351 289383879 0.000000e+00 726.0
17 TraesCS3B01G531000 chr3B 94.340 477 20 5 1 475 374867113 374866642 0.000000e+00 725.0
18 TraesCS3B01G531000 chr3B 93.933 478 23 4 1 476 289394667 289394194 0.000000e+00 717.0
19 TraesCS3B01G531000 chr3B 85.393 534 71 3 2495 3028 810510501 810511027 1.330000e-151 547.0
20 TraesCS3B01G531000 chr3B 88.736 435 39 2 5929 6355 772251590 772251158 2.240000e-144 523.0
21 TraesCS3B01G531000 chr3B 88.073 436 42 2 5928 6355 772180816 772180383 6.280000e-140 508.0
22 TraesCS3B01G531000 chr3B 89.182 379 31 2 5929 6299 772160913 772160537 1.380000e-126 464.0
23 TraesCS3B01G531000 chr3B 84.444 270 39 3 3496 3764 772009339 772009072 5.400000e-66 263.0
24 TraesCS3B01G531000 chr3B 84.191 272 40 3 3496 3766 771985549 771985280 1.940000e-65 261.0
25 TraesCS3B01G531000 chr3B 84.411 263 29 3 636 890 771981890 771981632 1.510000e-61 248.0
26 TraesCS3B01G531000 chr3B 84.444 180 24 2 636 815 772006141 772005966 2.600000e-39 174.0
27 TraesCS3B01G531000 chr3B 80.882 204 31 5 1040 1242 772029385 772029189 3.390000e-33 154.0
28 TraesCS3B01G531000 chr3B 80.882 204 31 5 1040 1242 772075139 772074943 3.390000e-33 154.0
29 TraesCS3B01G531000 chr3D 94.423 3550 155 21 3497 7023 578566134 578569663 0.000000e+00 5419.0
30 TraesCS3B01G531000 chr3D 91.960 2811 165 33 642 3411 578563172 578565962 0.000000e+00 3882.0
31 TraesCS3B01G531000 chr3D 90.938 1876 131 14 4080 5929 578523322 578525184 0.000000e+00 2486.0
32 TraesCS3B01G531000 chr3D 83.354 1592 202 31 2396 3959 578521043 578522599 0.000000e+00 1413.0
33 TraesCS3B01G531000 chr3D 87.904 1207 117 19 3960 5156 578549518 578550705 0.000000e+00 1393.0
34 TraesCS3B01G531000 chr3D 81.706 891 114 28 2669 3551 559488397 559489246 0.000000e+00 697.0
35 TraesCS3B01G531000 chr3D 93.484 399 23 3 5166 5563 578552303 578552699 2.180000e-164 590.0
36 TraesCS3B01G531000 chr3D 89.140 442 37 3 5926 6358 578525290 578525729 2.230000e-149 540.0
37 TraesCS3B01G531000 chr3A 94.324 2819 109 21 3998 6797 714026717 714023931 0.000000e+00 4272.0
38 TraesCS3B01G531000 chr3A 90.764 1884 132 12 4074 5929 714108114 714106245 0.000000e+00 2477.0
39 TraesCS3B01G531000 chr3A 92.942 1601 99 4 2169 3763 714062894 714061302 0.000000e+00 2318.0
40 TraesCS3B01G531000 chr3A 88.420 1779 157 30 3960 5714 714086987 714085234 0.000000e+00 2098.0
41 TraesCS3B01G531000 chr3A 82.995 1576 216 21 2396 3959 714110859 714109324 0.000000e+00 1378.0
42 TraesCS3B01G531000 chr3A 89.126 515 44 8 636 1142 714064924 714064414 1.290000e-176 630.0
43 TraesCS3B01G531000 chr3A 85.714 315 38 4 3646 3959 714088649 714088341 6.790000e-85 326.0
44 TraesCS3B01G531000 chr3A 93.939 198 12 0 6826 7023 714023703 714023506 4.120000e-77 300.0
45 TraesCS3B01G531000 chr3A 92.857 182 13 0 5748 5929 714085237 714085056 1.500000e-66 265.0
46 TraesCS3B01G531000 chr3A 89.756 205 11 2 5926 6122 714106056 714105854 3.250000e-63 254.0
47 TraesCS3B01G531000 chr3A 78.517 391 34 18 6559 6907 714093236 714092854 1.980000e-50 211.0
48 TraesCS3B01G531000 chr3A 93.805 113 5 2 1286 1396 714063822 714063710 1.210000e-37 169.0
49 TraesCS3B01G531000 chr3A 90.476 126 7 2 3879 4000 714029681 714029557 2.030000e-35 161.0
50 TraesCS3B01G531000 chr3A 93.151 73 5 0 3795 3867 714029736 714029664 2.680000e-19 108.0
51 TraesCS3B01G531000 chr3A 94.545 55 1 1 5926 5980 714084950 714084898 4.510000e-12 84.2
52 TraesCS3B01G531000 chr2B 95.333 150 7 0 476 625 23387279 23387130 9.100000e-59 239.0
53 TraesCS3B01G531000 chr2B 94.000 150 9 0 476 625 23394976 23394827 1.970000e-55 228.0
54 TraesCS3B01G531000 chr2B 94.000 150 9 0 476 625 23410360 23410211 1.970000e-55 228.0
55 TraesCS3B01G531000 chr2B 94.000 150 9 0 476 625 23418052 23417903 1.970000e-55 228.0
56 TraesCS3B01G531000 chr2B 93.333 150 10 0 476 625 23402669 23402520 9.170000e-54 222.0
57 TraesCS3B01G531000 chr2B 93.333 150 9 1 476 625 23428735 23428587 3.300000e-53 220.0
58 TraesCS3B01G531000 chrUn 93.671 158 8 1 477 634 372220603 372220448 1.180000e-57 235.0
59 TraesCS3B01G531000 chrUn 93.671 158 8 1 477 634 464417648 464417493 1.180000e-57 235.0
60 TraesCS3B01G531000 chr4B 92.810 153 10 1 477 629 34794081 34793930 3.300000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G531000 chr3B 771838969 771845991 7022 True 12970.000000 12970 100.000000 1 7023 1 chr3B.!!$R6 7022
1 TraesCS3B01G531000 chr3B 772222041 772230365 8324 True 4833.000000 8674 94.571000 997 7011 2 chr3B.!!$R16 6014
2 TraesCS3B01G531000 chr3B 772251158 772255942 4784 True 1427.333333 2418 87.435333 2466 6355 3 chr3B.!!$R17 3889
3 TraesCS3B01G531000 chr3B 772180383 772184816 4433 True 1403.333333 2329 87.085000 2466 6355 3 chr3B.!!$R15 3889
4 TraesCS3B01G531000 chr3B 772168938 772170397 1459 True 1321.000000 1321 83.145000 2466 3959 1 chr3B.!!$R10 1493
5 TraesCS3B01G531000 chr3B 742664833 742665847 1014 False 894.000000 894 82.718000 2531 3551 1 chr3B.!!$F1 1020
6 TraesCS3B01G531000 chr3B 771863134 771871687 8553 True 778.000000 780 97.926000 1 449 3 chr3B.!!$R11 448
7 TraesCS3B01G531000 chr3B 772160537 772161881 1344 True 762.500000 1061 89.188500 5080 6299 2 chr3B.!!$R14 1219
8 TraesCS3B01G531000 chr3B 810510501 810511027 526 False 547.000000 547 85.393000 2495 3028 1 chr3B.!!$F2 533
9 TraesCS3B01G531000 chr3B 771981632 771985549 3917 True 254.500000 261 84.301000 636 3766 2 chr3B.!!$R12 3130
10 TraesCS3B01G531000 chr3B 772005966 772009339 3373 True 218.500000 263 84.444000 636 3764 2 chr3B.!!$R13 3128
11 TraesCS3B01G531000 chr3D 578563172 578569663 6491 False 4650.500000 5419 93.191500 642 7023 2 chr3D.!!$F4 6381
12 TraesCS3B01G531000 chr3D 578521043 578525729 4686 False 1479.666667 2486 87.810667 2396 6358 3 chr3D.!!$F2 3962
13 TraesCS3B01G531000 chr3D 578549518 578552699 3181 False 991.500000 1393 90.694000 3960 5563 2 chr3D.!!$F3 1603
14 TraesCS3B01G531000 chr3D 559488397 559489246 849 False 697.000000 697 81.706000 2669 3551 1 chr3D.!!$F1 882
15 TraesCS3B01G531000 chr3A 714105854 714110859 5005 True 1369.666667 2477 87.838333 2396 6122 3 chr3A.!!$R5 3726
16 TraesCS3B01G531000 chr3A 714023506 714029736 6230 True 1210.250000 4272 92.972500 3795 7023 4 chr3A.!!$R2 3228
17 TraesCS3B01G531000 chr3A 714061302 714064924 3622 True 1039.000000 2318 91.957667 636 3763 3 chr3A.!!$R3 3127
18 TraesCS3B01G531000 chr3A 714084898 714088649 3751 True 693.300000 2098 90.384000 3646 5980 4 chr3A.!!$R4 2334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 581 0.031449 ATTGTTTTTGTCCGCACCCG 59.969 50.000 0.00 0.0 0.00 5.28 F
952 962 0.389426 GTCCTCGCGCTCTACCAAAA 60.389 55.000 5.56 0.0 0.00 2.44 F
1506 2546 0.108186 CGAAGCTCAGCACCATGGTA 60.108 55.000 19.28 0.0 0.00 3.25 F
1868 5256 0.252881 TCCTGCCTGGTCCAAGAGAT 60.253 55.000 0.00 0.0 37.07 2.75 F
2019 5408 0.790207 CCGGGCAATGACGAATATCG 59.210 55.000 0.00 0.0 46.93 2.92 F
3054 6495 1.942657 CGAAATCAAGTGGCGATGGAT 59.057 47.619 0.00 0.0 0.00 3.41 F
3868 7408 3.564225 GCGGAACTGGAGAAAGAGAAAAA 59.436 43.478 0.00 0.0 0.00 1.94 F
4746 15343 2.996734 CCAAAGGGGCCACGCATT 60.997 61.111 4.39 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 2523 0.108424 ATGGTGCTGAGCTTCGTCTC 60.108 55.000 5.83 0.00 0.00 3.36 R
2001 5390 0.790207 CCGATATTCGTCATTGCCCG 59.210 55.000 0.00 0.00 38.40 6.13 R
2723 6145 5.008415 ACATCCGAATGATCAAAGCAAGATC 59.992 40.000 0.00 6.21 41.72 2.75 R
3596 7134 0.552848 ATCATGCCCCCACTCGAAAT 59.447 50.000 0.00 0.00 0.00 2.17 R
3868 7408 4.080975 CCTTCTCCAGCTTCTCATTCTTCT 60.081 45.833 0.00 0.00 0.00 2.85 R
4222 13000 0.624795 GGGGGAGGGAGGTGATCTTT 60.625 60.000 0.00 0.00 0.00 2.52 R
4824 15421 5.378230 TTGTTGGATGCTTAGAGATGGAT 57.622 39.130 0.00 0.00 0.00 3.41 R
6314 21584 0.388649 GCTGTGACCACGGTCTACTG 60.389 60.000 16.88 15.77 44.80 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.404040 GATGGTTCTGGGTTGTGGGA 59.596 55.000 0.00 0.00 0.00 4.37
277 279 4.137543 GGAGTTTTACCATAGGAGGCATG 58.862 47.826 0.00 0.00 0.00 4.06
286 288 3.885297 CCATAGGAGGCATGGTAAACAAG 59.115 47.826 0.00 0.00 38.53 3.16
320 322 7.311408 CAAAATCAAAAGAAAGCCCAAAACAA 58.689 30.769 0.00 0.00 0.00 2.83
321 323 7.459795 AAATCAAAAGAAAGCCCAAAACAAA 57.540 28.000 0.00 0.00 0.00 2.83
322 324 7.459795 AATCAAAAGAAAGCCCAAAACAAAA 57.540 28.000 0.00 0.00 0.00 2.44
323 325 6.493449 TCAAAAGAAAGCCCAAAACAAAAG 57.507 33.333 0.00 0.00 0.00 2.27
324 326 5.414144 TCAAAAGAAAGCCCAAAACAAAAGG 59.586 36.000 0.00 0.00 0.00 3.11
325 327 4.568072 AAGAAAGCCCAAAACAAAAGGT 57.432 36.364 0.00 0.00 0.00 3.50
326 328 4.568072 AGAAAGCCCAAAACAAAAGGTT 57.432 36.364 0.00 0.00 42.98 3.50
354 356 9.627123 TCTTTTTGAAAGAGACTAAATCCAAGA 57.373 29.630 0.00 0.00 0.00 3.02
358 360 9.627123 TTTGAAAGAGACTAAATCCAAGAAAGA 57.373 29.630 0.00 0.00 0.00 2.52
359 361 9.799106 TTGAAAGAGACTAAATCCAAGAAAGAT 57.201 29.630 0.00 0.00 0.00 2.40
360 362 9.799106 TGAAAGAGACTAAATCCAAGAAAGATT 57.201 29.630 0.00 0.00 35.46 2.40
386 388 7.721286 TTTTGAGAGAGCAAACTTAGAAGAG 57.279 36.000 0.00 0.00 37.48 2.85
387 389 5.398603 TGAGAGAGCAAACTTAGAAGAGG 57.601 43.478 0.00 0.00 0.00 3.69
388 390 4.221703 TGAGAGAGCAAACTTAGAAGAGGG 59.778 45.833 0.00 0.00 0.00 4.30
389 391 4.421131 AGAGAGCAAACTTAGAAGAGGGA 58.579 43.478 0.00 0.00 0.00 4.20
390 392 5.029474 AGAGAGCAAACTTAGAAGAGGGAT 58.971 41.667 0.00 0.00 0.00 3.85
391 393 5.487131 AGAGAGCAAACTTAGAAGAGGGATT 59.513 40.000 0.00 0.00 0.00 3.01
392 394 6.012945 AGAGAGCAAACTTAGAAGAGGGATTT 60.013 38.462 0.00 0.00 0.00 2.17
393 395 6.547402 AGAGCAAACTTAGAAGAGGGATTTT 58.453 36.000 0.00 0.00 0.00 1.82
394 396 7.690256 AGAGCAAACTTAGAAGAGGGATTTTA 58.310 34.615 0.00 0.00 0.00 1.52
395 397 8.164070 AGAGCAAACTTAGAAGAGGGATTTTAA 58.836 33.333 0.00 0.00 0.00 1.52
396 398 8.341892 AGCAAACTTAGAAGAGGGATTTTAAG 57.658 34.615 0.00 0.00 0.00 1.85
397 399 8.164070 AGCAAACTTAGAAGAGGGATTTTAAGA 58.836 33.333 0.00 0.00 0.00 2.10
398 400 8.793592 GCAAACTTAGAAGAGGGATTTTAAGAA 58.206 33.333 0.00 0.00 0.00 2.52
400 402 9.521841 AAACTTAGAAGAGGGATTTTAAGAAGG 57.478 33.333 0.00 0.00 0.00 3.46
401 403 7.634718 ACTTAGAAGAGGGATTTTAAGAAGGG 58.365 38.462 0.00 0.00 0.00 3.95
402 404 7.239984 ACTTAGAAGAGGGATTTTAAGAAGGGT 59.760 37.037 0.00 0.00 0.00 4.34
403 405 6.470456 AGAAGAGGGATTTTAAGAAGGGTT 57.530 37.500 0.00 0.00 0.00 4.11
404 406 6.864421 AGAAGAGGGATTTTAAGAAGGGTTT 58.136 36.000 0.00 0.00 0.00 3.27
405 407 7.996788 AGAAGAGGGATTTTAAGAAGGGTTTA 58.003 34.615 0.00 0.00 0.00 2.01
406 408 8.453681 AGAAGAGGGATTTTAAGAAGGGTTTAA 58.546 33.333 0.00 0.00 0.00 1.52
407 409 9.085645 GAAGAGGGATTTTAAGAAGGGTTTAAA 57.914 33.333 0.00 0.00 0.00 1.52
408 410 9.615660 AAGAGGGATTTTAAGAAGGGTTTAAAT 57.384 29.630 0.00 0.00 32.00 1.40
409 411 9.035890 AGAGGGATTTTAAGAAGGGTTTAAATG 57.964 33.333 0.00 0.00 32.00 2.32
410 412 8.966155 AGGGATTTTAAGAAGGGTTTAAATGA 57.034 30.769 0.00 0.00 32.00 2.57
411 413 8.812972 AGGGATTTTAAGAAGGGTTTAAATGAC 58.187 33.333 0.00 0.00 32.00 3.06
412 414 8.038944 GGGATTTTAAGAAGGGTTTAAATGACC 58.961 37.037 0.00 0.00 32.00 4.02
413 415 8.812972 GGATTTTAAGAAGGGTTTAAATGACCT 58.187 33.333 0.00 0.00 37.34 3.85
421 423 7.669089 AAGGGTTTAAATGACCTTCTTCAAA 57.331 32.000 13.08 0.00 38.96 2.69
422 424 7.050970 AGGGTTTAAATGACCTTCTTCAAAC 57.949 36.000 0.00 0.00 37.34 2.93
423 425 6.041637 AGGGTTTAAATGACCTTCTTCAAACC 59.958 38.462 0.00 0.00 37.34 3.27
424 426 6.183360 GGGTTTAAATGACCTTCTTCAAACCA 60.183 38.462 13.20 0.00 35.59 3.67
425 427 7.269316 GGTTTAAATGACCTTCTTCAAACCAA 58.731 34.615 7.77 0.00 34.66 3.67
426 428 7.438160 GGTTTAAATGACCTTCTTCAAACCAAG 59.562 37.037 7.77 0.00 34.66 3.61
427 429 4.590850 AATGACCTTCTTCAAACCAAGC 57.409 40.909 0.00 0.00 0.00 4.01
428 430 3.011566 TGACCTTCTTCAAACCAAGCA 57.988 42.857 0.00 0.00 0.00 3.91
429 431 3.360867 TGACCTTCTTCAAACCAAGCAA 58.639 40.909 0.00 0.00 0.00 3.91
430 432 3.381272 TGACCTTCTTCAAACCAAGCAAG 59.619 43.478 0.00 0.00 0.00 4.01
431 433 2.101415 ACCTTCTTCAAACCAAGCAAGC 59.899 45.455 0.00 0.00 0.00 4.01
432 434 2.546584 CCTTCTTCAAACCAAGCAAGCC 60.547 50.000 0.00 0.00 0.00 4.35
433 435 2.071778 TCTTCAAACCAAGCAAGCCT 57.928 45.000 0.00 0.00 0.00 4.58
434 436 1.956477 TCTTCAAACCAAGCAAGCCTC 59.044 47.619 0.00 0.00 0.00 4.70
435 437 0.667993 TTCAAACCAAGCAAGCCTCG 59.332 50.000 0.00 0.00 0.00 4.63
436 438 0.179032 TCAAACCAAGCAAGCCTCGA 60.179 50.000 0.00 0.00 0.00 4.04
437 439 0.667993 CAAACCAAGCAAGCCTCGAA 59.332 50.000 0.00 0.00 0.00 3.71
438 440 0.668535 AAACCAAGCAAGCCTCGAAC 59.331 50.000 0.00 0.00 0.00 3.95
439 441 0.179018 AACCAAGCAAGCCTCGAACT 60.179 50.000 0.00 0.00 0.00 3.01
440 442 0.685097 ACCAAGCAAGCCTCGAACTA 59.315 50.000 0.00 0.00 0.00 2.24
441 443 1.071699 ACCAAGCAAGCCTCGAACTAA 59.928 47.619 0.00 0.00 0.00 2.24
442 444 2.151202 CCAAGCAAGCCTCGAACTAAA 58.849 47.619 0.00 0.00 0.00 1.85
443 445 2.552315 CCAAGCAAGCCTCGAACTAAAA 59.448 45.455 0.00 0.00 0.00 1.52
444 446 3.004315 CCAAGCAAGCCTCGAACTAAAAA 59.996 43.478 0.00 0.00 0.00 1.94
445 447 3.898517 AGCAAGCCTCGAACTAAAAAC 57.101 42.857 0.00 0.00 0.00 2.43
446 448 3.211045 AGCAAGCCTCGAACTAAAAACA 58.789 40.909 0.00 0.00 0.00 2.83
447 449 3.630312 AGCAAGCCTCGAACTAAAAACAA 59.370 39.130 0.00 0.00 0.00 2.83
448 450 4.097286 AGCAAGCCTCGAACTAAAAACAAA 59.903 37.500 0.00 0.00 0.00 2.83
449 451 4.801516 GCAAGCCTCGAACTAAAAACAAAA 59.198 37.500 0.00 0.00 0.00 2.44
450 452 5.289917 GCAAGCCTCGAACTAAAAACAAAAA 59.710 36.000 0.00 0.00 0.00 1.94
451 453 6.692392 CAAGCCTCGAACTAAAAACAAAAAC 58.308 36.000 0.00 0.00 0.00 2.43
452 454 5.345702 AGCCTCGAACTAAAAACAAAAACC 58.654 37.500 0.00 0.00 0.00 3.27
453 455 5.103687 GCCTCGAACTAAAAACAAAAACCA 58.896 37.500 0.00 0.00 0.00 3.67
454 456 5.005012 GCCTCGAACTAAAAACAAAAACCAC 59.995 40.000 0.00 0.00 0.00 4.16
455 457 6.094061 CCTCGAACTAAAAACAAAAACCACA 58.906 36.000 0.00 0.00 0.00 4.17
456 458 6.586844 CCTCGAACTAAAAACAAAAACCACAA 59.413 34.615 0.00 0.00 0.00 3.33
457 459 7.116519 CCTCGAACTAAAAACAAAAACCACAAA 59.883 33.333 0.00 0.00 0.00 2.83
458 460 8.361592 TCGAACTAAAAACAAAAACCACAAAA 57.638 26.923 0.00 0.00 0.00 2.44
459 461 8.989980 TCGAACTAAAAACAAAAACCACAAAAT 58.010 25.926 0.00 0.00 0.00 1.82
460 462 9.600646 CGAACTAAAAACAAAAACCACAAAATT 57.399 25.926 0.00 0.00 0.00 1.82
469 471 7.793907 CAAAAACCACAAAATTTTTGGAGTG 57.206 32.000 25.73 18.95 45.60 3.51
470 472 7.366513 CAAAAACCACAAAATTTTTGGAGTGT 58.633 30.769 25.73 12.92 45.60 3.55
471 473 6.735678 AAACCACAAAATTTTTGGAGTGTC 57.264 33.333 25.73 0.00 34.24 3.67
472 474 5.413309 ACCACAAAATTTTTGGAGTGTCA 57.587 34.783 25.73 0.00 34.24 3.58
473 475 5.175127 ACCACAAAATTTTTGGAGTGTCAC 58.825 37.500 25.73 0.00 34.24 3.67
474 476 5.174395 CCACAAAATTTTTGGAGTGTCACA 58.826 37.500 22.27 0.00 31.39 3.58
475 477 5.291614 CCACAAAATTTTTGGAGTGTCACAG 59.708 40.000 22.27 1.86 31.39 3.66
476 478 6.098679 CACAAAATTTTTGGAGTGTCACAGA 58.901 36.000 22.27 0.00 0.00 3.41
477 479 6.254157 CACAAAATTTTTGGAGTGTCACAGAG 59.746 38.462 22.27 0.00 0.00 3.35
478 480 4.574599 AATTTTTGGAGTGTCACAGAGC 57.425 40.909 5.62 0.00 0.00 4.09
479 481 1.967319 TTTTGGAGTGTCACAGAGCC 58.033 50.000 5.62 1.81 0.00 4.70
480 482 0.108585 TTTGGAGTGTCACAGAGCCC 59.891 55.000 5.62 0.00 0.00 5.19
481 483 1.768684 TTGGAGTGTCACAGAGCCCC 61.769 60.000 5.62 0.00 0.00 5.80
482 484 2.217038 GGAGTGTCACAGAGCCCCA 61.217 63.158 5.62 0.00 0.00 4.96
483 485 1.754745 GAGTGTCACAGAGCCCCAA 59.245 57.895 5.62 0.00 0.00 4.12
484 486 0.108585 GAGTGTCACAGAGCCCCAAA 59.891 55.000 5.62 0.00 0.00 3.28
485 487 0.179018 AGTGTCACAGAGCCCCAAAC 60.179 55.000 5.62 0.00 0.00 2.93
486 488 1.150536 TGTCACAGAGCCCCAAACC 59.849 57.895 0.00 0.00 0.00 3.27
487 489 1.352622 TGTCACAGAGCCCCAAACCT 61.353 55.000 0.00 0.00 0.00 3.50
488 490 0.890996 GTCACAGAGCCCCAAACCTG 60.891 60.000 0.00 0.00 0.00 4.00
489 491 1.604593 CACAGAGCCCCAAACCTGG 60.605 63.158 0.00 0.00 43.10 4.45
495 497 4.305956 CCCCAAACCTGGCCAGCT 62.306 66.667 28.39 11.78 41.99 4.24
496 498 2.677875 CCCAAACCTGGCCAGCTC 60.678 66.667 28.39 0.00 41.99 4.09
497 499 2.677875 CCAAACCTGGCCAGCTCC 60.678 66.667 28.39 0.00 35.39 4.70
498 500 2.677875 CAAACCTGGCCAGCTCCC 60.678 66.667 28.39 0.00 0.00 4.30
499 501 4.351054 AAACCTGGCCAGCTCCCG 62.351 66.667 28.39 15.70 0.00 5.14
503 505 2.844362 CTGGCCAGCTCCCGGATA 60.844 66.667 22.33 0.00 0.00 2.59
504 506 2.844362 TGGCCAGCTCCCGGATAG 60.844 66.667 0.00 0.09 0.00 2.08
505 507 4.321966 GGCCAGCTCCCGGATAGC 62.322 72.222 18.10 18.10 40.40 2.97
506 508 4.321966 GCCAGCTCCCGGATAGCC 62.322 72.222 21.04 6.48 41.02 3.93
507 509 2.844362 CCAGCTCCCGGATAGCCA 60.844 66.667 21.04 0.00 41.02 4.75
508 510 2.219875 CCAGCTCCCGGATAGCCAT 61.220 63.158 21.04 5.20 41.02 4.40
509 511 1.004080 CAGCTCCCGGATAGCCATG 60.004 63.158 21.04 12.48 41.02 3.66
510 512 2.219875 AGCTCCCGGATAGCCATGG 61.220 63.158 21.04 7.63 41.02 3.66
511 513 2.217038 GCTCCCGGATAGCCATGGA 61.217 63.158 18.40 5.26 34.53 3.41
512 514 1.978473 CTCCCGGATAGCCATGGAG 59.022 63.158 18.40 15.89 42.87 3.86
513 515 1.536418 TCCCGGATAGCCATGGAGG 60.536 63.158 18.40 7.81 41.84 4.30
524 526 1.948104 CCATGGAGGCAATTGCATTG 58.052 50.000 30.32 18.72 44.36 2.82
525 527 1.208535 CCATGGAGGCAATTGCATTGT 59.791 47.619 30.32 12.64 44.36 2.71
526 528 2.355310 CCATGGAGGCAATTGCATTGTT 60.355 45.455 30.32 10.35 44.36 2.83
527 529 3.118702 CCATGGAGGCAATTGCATTGTTA 60.119 43.478 30.32 12.39 44.36 2.41
528 530 4.505808 CATGGAGGCAATTGCATTGTTAA 58.494 39.130 30.32 10.12 44.36 2.01
529 531 4.613925 TGGAGGCAATTGCATTGTTAAA 57.386 36.364 30.32 5.61 44.36 1.52
530 532 4.314121 TGGAGGCAATTGCATTGTTAAAC 58.686 39.130 30.32 10.63 44.36 2.01
531 533 4.202295 TGGAGGCAATTGCATTGTTAAACA 60.202 37.500 30.32 12.62 44.36 2.83
532 534 4.937015 GGAGGCAATTGCATTGTTAAACAT 59.063 37.500 30.32 0.00 44.36 2.71
533 535 5.163834 GGAGGCAATTGCATTGTTAAACATG 60.164 40.000 30.32 0.00 44.36 3.21
534 536 4.696402 AGGCAATTGCATTGTTAAACATGG 59.304 37.500 30.32 0.00 44.36 3.66
535 537 4.694509 GGCAATTGCATTGTTAAACATGGA 59.305 37.500 30.32 0.00 44.36 3.41
536 538 5.390779 GGCAATTGCATTGTTAAACATGGAC 60.391 40.000 30.32 4.32 44.36 4.02
537 539 5.178996 GCAATTGCATTGTTAAACATGGACA 59.821 36.000 25.36 0.00 42.20 4.02
538 540 6.592166 CAATTGCATTGTTAAACATGGACAC 58.408 36.000 0.00 0.00 35.57 3.67
539 541 4.250116 TGCATTGTTAAACATGGACACC 57.750 40.909 0.00 0.00 0.00 4.16
540 542 3.006323 TGCATTGTTAAACATGGACACCC 59.994 43.478 0.00 0.00 0.00 4.61
541 543 3.258123 GCATTGTTAAACATGGACACCCT 59.742 43.478 0.00 0.00 0.00 4.34
542 544 4.262420 GCATTGTTAAACATGGACACCCTT 60.262 41.667 0.00 0.00 0.00 3.95
543 545 4.927978 TTGTTAAACATGGACACCCTTG 57.072 40.909 0.00 0.00 41.81 3.61
544 546 2.625790 TGTTAAACATGGACACCCTTGC 59.374 45.455 0.00 0.00 40.27 4.01
545 547 1.917872 TAAACATGGACACCCTTGCC 58.082 50.000 0.00 0.00 40.27 4.52
546 548 0.831711 AAACATGGACACCCTTGCCC 60.832 55.000 0.00 0.00 40.27 5.36
547 549 2.017668 AACATGGACACCCTTGCCCA 62.018 55.000 0.00 0.00 40.27 5.36
548 550 1.679977 CATGGACACCCTTGCCCAG 60.680 63.158 0.00 0.00 31.90 4.45
549 551 2.162906 ATGGACACCCTTGCCCAGT 61.163 57.895 0.00 0.00 31.48 4.00
550 552 1.729267 ATGGACACCCTTGCCCAGTT 61.729 55.000 0.00 0.00 31.48 3.16
551 553 1.903404 GGACACCCTTGCCCAGTTG 60.903 63.158 0.00 0.00 0.00 3.16
552 554 1.150536 GACACCCTTGCCCAGTTGA 59.849 57.895 0.00 0.00 0.00 3.18
553 555 0.251341 GACACCCTTGCCCAGTTGAT 60.251 55.000 0.00 0.00 0.00 2.57
554 556 0.540365 ACACCCTTGCCCAGTTGATG 60.540 55.000 0.00 0.00 0.00 3.07
555 557 0.540365 CACCCTTGCCCAGTTGATGT 60.540 55.000 0.00 0.00 0.00 3.06
556 558 0.188342 ACCCTTGCCCAGTTGATGTT 59.812 50.000 0.00 0.00 0.00 2.71
557 559 1.427368 ACCCTTGCCCAGTTGATGTTA 59.573 47.619 0.00 0.00 0.00 2.41
558 560 1.818674 CCCTTGCCCAGTTGATGTTAC 59.181 52.381 0.00 0.00 0.00 2.50
559 561 2.513753 CCTTGCCCAGTTGATGTTACA 58.486 47.619 0.00 0.00 0.00 2.41
560 562 2.890311 CCTTGCCCAGTTGATGTTACAA 59.110 45.455 0.00 0.00 0.00 2.41
561 563 3.511146 CCTTGCCCAGTTGATGTTACAAT 59.489 43.478 0.00 0.00 32.36 2.71
562 564 4.021192 CCTTGCCCAGTTGATGTTACAATT 60.021 41.667 0.00 0.00 32.36 2.32
563 565 4.517952 TGCCCAGTTGATGTTACAATTG 57.482 40.909 3.24 3.24 37.28 2.32
564 566 3.894427 TGCCCAGTTGATGTTACAATTGT 59.106 39.130 16.68 16.68 36.32 2.71
565 567 4.343526 TGCCCAGTTGATGTTACAATTGTT 59.656 37.500 17.78 0.00 36.32 2.83
566 568 5.163364 TGCCCAGTTGATGTTACAATTGTTT 60.163 36.000 17.78 0.00 36.32 2.83
567 569 5.757808 GCCCAGTTGATGTTACAATTGTTTT 59.242 36.000 17.78 0.00 36.32 2.43
568 570 6.259829 GCCCAGTTGATGTTACAATTGTTTTT 59.740 34.615 17.78 0.00 36.32 1.94
569 571 7.629130 CCCAGTTGATGTTACAATTGTTTTTG 58.371 34.615 17.78 3.35 36.32 2.44
570 572 7.279758 CCCAGTTGATGTTACAATTGTTTTTGT 59.720 33.333 17.78 0.00 42.31 2.83
571 573 8.327429 CCAGTTGATGTTACAATTGTTTTTGTC 58.673 33.333 17.78 9.56 40.25 3.18
572 574 8.327429 CAGTTGATGTTACAATTGTTTTTGTCC 58.673 33.333 17.78 1.76 40.25 4.02
573 575 7.221838 AGTTGATGTTACAATTGTTTTTGTCCG 59.778 33.333 17.78 0.00 40.25 4.79
574 576 5.460419 TGATGTTACAATTGTTTTTGTCCGC 59.540 36.000 17.78 0.00 40.25 5.54
575 577 4.744570 TGTTACAATTGTTTTTGTCCGCA 58.255 34.783 17.78 0.81 40.25 5.69
576 578 4.563184 TGTTACAATTGTTTTTGTCCGCAC 59.437 37.500 17.78 0.00 40.25 5.34
577 579 2.545731 ACAATTGTTTTTGTCCGCACC 58.454 42.857 4.92 0.00 34.83 5.01
578 580 1.864082 CAATTGTTTTTGTCCGCACCC 59.136 47.619 0.00 0.00 0.00 4.61
579 581 0.031449 ATTGTTTTTGTCCGCACCCG 59.969 50.000 0.00 0.00 0.00 5.28
580 582 1.030488 TTGTTTTTGTCCGCACCCGA 61.030 50.000 0.00 0.00 36.29 5.14
581 583 1.281656 GTTTTTGTCCGCACCCGAG 59.718 57.895 0.00 0.00 36.29 4.63
582 584 2.548295 TTTTTGTCCGCACCCGAGC 61.548 57.895 0.00 0.00 36.29 5.03
590 592 2.280186 GCACCCGAGCGGATTAGG 60.280 66.667 11.05 0.00 37.50 2.69
591 593 3.090219 GCACCCGAGCGGATTAGGT 62.090 63.158 11.05 0.00 37.50 3.08
592 594 1.520666 CACCCGAGCGGATTAGGTT 59.479 57.895 11.05 0.00 37.50 3.50
593 595 0.748450 CACCCGAGCGGATTAGGTTA 59.252 55.000 11.05 0.00 37.50 2.85
594 596 1.137479 CACCCGAGCGGATTAGGTTAA 59.863 52.381 11.05 0.00 37.50 2.01
595 597 1.832998 ACCCGAGCGGATTAGGTTAAA 59.167 47.619 11.05 0.00 37.50 1.52
596 598 2.236893 ACCCGAGCGGATTAGGTTAAAA 59.763 45.455 11.05 0.00 37.50 1.52
597 599 3.118149 ACCCGAGCGGATTAGGTTAAAAT 60.118 43.478 11.05 0.00 37.50 1.82
598 600 3.497262 CCCGAGCGGATTAGGTTAAAATC 59.503 47.826 11.05 0.00 37.50 2.17
599 601 3.497262 CCGAGCGGATTAGGTTAAAATCC 59.503 47.826 2.00 7.17 46.01 3.01
600 602 3.497262 CGAGCGGATTAGGTTAAAATCCC 59.503 47.826 10.49 5.35 46.52 3.85
601 603 3.819337 GAGCGGATTAGGTTAAAATCCCC 59.181 47.826 10.49 3.74 46.52 4.81
602 604 2.889045 GCGGATTAGGTTAAAATCCCCC 59.111 50.000 10.49 1.36 46.52 5.40
624 626 3.206150 CCTACCATGAAAGGGATCAACG 58.794 50.000 0.00 0.00 43.46 4.10
625 627 3.118408 CCTACCATGAAAGGGATCAACGA 60.118 47.826 0.00 0.00 43.46 3.85
626 628 2.991250 ACCATGAAAGGGATCAACGAG 58.009 47.619 0.00 0.00 43.46 4.18
627 629 2.292267 CCATGAAAGGGATCAACGAGG 58.708 52.381 0.00 0.00 43.46 4.63
628 630 2.092968 CCATGAAAGGGATCAACGAGGA 60.093 50.000 0.00 0.00 43.46 3.71
629 631 3.609853 CATGAAAGGGATCAACGAGGAA 58.390 45.455 0.00 0.00 32.06 3.36
630 632 3.053831 TGAAAGGGATCAACGAGGAAC 57.946 47.619 0.00 0.00 0.00 3.62
631 633 2.290071 TGAAAGGGATCAACGAGGAACC 60.290 50.000 0.00 0.00 0.00 3.62
632 634 1.358152 AAGGGATCAACGAGGAACCA 58.642 50.000 8.92 0.00 31.76 3.67
633 635 1.358152 AGGGATCAACGAGGAACCAA 58.642 50.000 8.92 0.00 31.76 3.67
634 636 1.702957 AGGGATCAACGAGGAACCAAA 59.297 47.619 8.92 0.00 31.76 3.28
635 637 2.308866 AGGGATCAACGAGGAACCAAAT 59.691 45.455 8.92 0.00 31.76 2.32
636 638 3.089284 GGGATCAACGAGGAACCAAATT 58.911 45.455 8.92 0.00 31.76 1.82
637 639 3.509967 GGGATCAACGAGGAACCAAATTT 59.490 43.478 8.92 0.00 31.76 1.82
638 640 4.021456 GGGATCAACGAGGAACCAAATTTT 60.021 41.667 8.92 0.00 31.76 1.82
639 641 4.923281 GGATCAACGAGGAACCAAATTTTG 59.077 41.667 1.99 1.99 30.62 2.44
663 665 2.506881 CGCCGAGCCCAATTTTGC 60.507 61.111 0.00 0.00 0.00 3.68
664 666 2.656055 GCCGAGCCCAATTTTGCA 59.344 55.556 0.00 0.00 0.00 4.08
678 680 5.511202 CCAATTTTGCACAGGGTCTGTAAAT 60.511 40.000 0.00 1.76 43.43 1.40
694 696 2.240493 AAATGCCCGACCTAGAATCG 57.760 50.000 8.85 8.85 39.33 3.34
730 733 1.732077 GCGCATGGCATTTCTTCGAAA 60.732 47.619 0.30 0.00 42.87 3.46
764 767 8.496707 AAATCATTTGCCTGATTAAAATGGTC 57.503 30.769 6.67 0.00 43.37 4.02
786 789 7.920151 TGGTCAAAACTCAGATGTGTATTTTTG 59.080 33.333 14.43 14.43 33.60 2.44
817 820 2.113139 CACTGAAACAGCCCCCGT 59.887 61.111 0.00 0.00 34.37 5.28
873 876 3.516700 CCAGCAAATCTTTGGAAGGGATT 59.483 43.478 4.93 0.00 38.57 3.01
883 886 3.219176 TGGAAGGGATTGATGCTCATC 57.781 47.619 3.03 3.03 38.29 2.92
893 896 3.007473 TGATGCTCATCAATTGGCAGA 57.993 42.857 9.88 0.70 44.14 4.26
895 898 3.380320 TGATGCTCATCAATTGGCAGAAG 59.620 43.478 9.88 0.00 44.14 2.85
926 936 0.835276 AGCTATGCATGCACTGGAGA 59.165 50.000 25.37 0.00 0.00 3.71
945 955 2.749044 TTACCGTCCTCGCGCTCT 60.749 61.111 5.56 0.00 35.54 4.09
952 962 0.389426 GTCCTCGCGCTCTACCAAAA 60.389 55.000 5.56 0.00 0.00 2.44
973 983 2.993264 GGTCGTCGTCTTCCCCCA 60.993 66.667 0.00 0.00 0.00 4.96
974 984 2.572284 GTCGTCGTCTTCCCCCAG 59.428 66.667 0.00 0.00 0.00 4.45
975 985 2.116772 TCGTCGTCTTCCCCCAGT 59.883 61.111 0.00 0.00 0.00 4.00
995 1008 2.839486 ACTCTGAATTCCAACTCGCA 57.161 45.000 2.27 0.00 0.00 5.10
1037 1050 2.364842 ATGCGTCCTCCCAGCTCT 60.365 61.111 0.00 0.00 0.00 4.09
1244 1257 2.664436 CGACGGCGACCAAGGTTTC 61.664 63.158 16.62 0.00 40.82 2.78
1245 1258 2.281276 ACGGCGACCAAGGTTTCC 60.281 61.111 16.62 0.00 0.00 3.13
1309 1796 6.705863 AGATTGTTTCTTGCTCTTTGTTCT 57.294 33.333 0.00 0.00 0.00 3.01
1349 1836 8.291740 GGCGGAGAAGTTTTTACTGTATTTTTA 58.708 33.333 0.00 0.00 0.00 1.52
1388 1877 1.615883 CCGTCTACAGATCTCATGGGG 59.384 57.143 0.00 0.00 0.00 4.96
1395 2427 6.931840 GTCTACAGATCTCATGGGGAAAATAC 59.068 42.308 0.00 0.00 0.00 1.89
1409 2441 5.123936 GGGAAAATACACATAGGTCCTCAC 58.876 45.833 0.00 0.00 0.00 3.51
1442 2482 0.757188 CTACCCATCGTCTCCTGCCT 60.757 60.000 0.00 0.00 0.00 4.75
1461 2501 1.163420 TATTAATGGCTGCCGCACCG 61.163 55.000 14.98 0.00 38.10 4.94
1483 2523 6.071840 ACCGAATTCCTAAATCTCTATCCGAG 60.072 42.308 0.00 0.00 41.30 4.63
1506 2546 0.108186 CGAAGCTCAGCACCATGGTA 60.108 55.000 19.28 0.00 0.00 3.25
1591 2631 9.740239 CTGGTTACCATTCAAATTTCTATGATG 57.260 33.333 3.88 1.58 30.82 3.07
1645 2685 1.346722 AGTTGCTTGTAGGCCTTACGT 59.653 47.619 12.58 0.00 34.87 3.57
1688 5075 0.530870 GACTGGCACGGCTTCCTATC 60.531 60.000 0.00 0.00 39.14 2.08
1851 5239 3.594134 CCAGATGAGTGAAGTCTGTTCC 58.406 50.000 0.00 0.00 38.10 3.62
1852 5240 3.260380 CCAGATGAGTGAAGTCTGTTCCT 59.740 47.826 0.00 0.00 38.10 3.36
1853 5241 4.244066 CAGATGAGTGAAGTCTGTTCCTG 58.756 47.826 0.00 0.00 35.72 3.86
1854 5242 2.533266 TGAGTGAAGTCTGTTCCTGC 57.467 50.000 0.00 0.00 0.00 4.85
1855 5243 1.070758 TGAGTGAAGTCTGTTCCTGCC 59.929 52.381 0.00 0.00 0.00 4.85
1868 5256 0.252881 TCCTGCCTGGTCCAAGAGAT 60.253 55.000 0.00 0.00 37.07 2.75
1882 5270 7.926555 TGGTCCAAGAGATAGAATCGAAATTAC 59.073 37.037 0.00 0.00 0.00 1.89
1890 5278 9.105206 GAGATAGAATCGAAATTACGTCAGTAC 57.895 37.037 0.00 0.00 31.60 2.73
2019 5408 0.790207 CCGGGCAATGACGAATATCG 59.210 55.000 0.00 0.00 46.93 2.92
2211 5604 4.180817 CAGGAGGGACAAAACAAACAAAC 58.819 43.478 0.00 0.00 0.00 2.93
2365 5762 2.595463 GGCACAGCAAGGTGAGCA 60.595 61.111 19.93 0.00 41.32 4.26
2366 5763 1.975407 GGCACAGCAAGGTGAGCAT 60.975 57.895 19.93 0.00 41.32 3.79
2388 5785 7.548427 AGCATAAAATCATCTCATCACGATAGG 59.452 37.037 0.00 0.00 43.77 2.57
2506 5926 2.003301 GTAGGTTAGCTGCAGTTCTGC 58.997 52.381 16.64 16.65 39.61 4.26
2723 6145 4.217983 CCCCGAGTAAGTATAAGTAGCTGG 59.782 50.000 0.00 0.00 0.00 4.85
3054 6495 1.942657 CGAAATCAAGTGGCGATGGAT 59.057 47.619 0.00 0.00 0.00 3.41
3070 6511 3.812156 TGGATACCGATCATGAAACGT 57.188 42.857 19.06 9.93 33.27 3.99
3577 7115 8.651589 ATTCACTCGGGTTATAAGATCATCTA 57.348 34.615 0.00 0.00 0.00 1.98
3596 7134 7.791029 TCATCTAAGATGCATGTGGTAAGTTA 58.209 34.615 2.46 0.00 0.00 2.24
3716 7255 7.600752 TCGTTCTTTGTCTTTGAAATTTTGGTT 59.399 29.630 0.00 0.00 0.00 3.67
3733 7272 9.710900 AATTTTGGTTGATTCCTTTCAATCTAC 57.289 29.630 0.00 0.00 37.57 2.59
3806 7345 9.141400 GAACAGAAATACTTTGAACTACGATCT 57.859 33.333 0.00 0.00 0.00 2.75
3868 7408 3.564225 GCGGAACTGGAGAAAGAGAAAAA 59.436 43.478 0.00 0.00 0.00 1.94
3996 9928 6.721571 TGTTCTATTGCTAGTTTGCTACAC 57.278 37.500 0.00 0.00 0.00 2.90
4151 12929 9.784680 GTGTCGTTATCTCTAAGTCATTTCTAA 57.215 33.333 0.00 0.00 0.00 2.10
4222 13000 5.520748 AGGAGAAGCAAATTCCTCCTTTA 57.479 39.130 0.00 0.00 40.08 1.85
4746 15343 2.996734 CCAAAGGGGCCACGCATT 60.997 61.111 4.39 0.00 0.00 3.56
4824 15421 6.775142 TCAACAGGTTTGATCCATTTAGTTCA 59.225 34.615 0.00 0.00 0.00 3.18
4994 15598 5.868801 CCATGGTGTTTGTATGTCCAAAATC 59.131 40.000 2.57 0.00 36.17 2.17
6202 21460 3.125146 CCGTTATGGATGGATAATGTGCG 59.875 47.826 0.00 0.00 42.00 5.34
6275 21537 8.777413 TCAGAAATTAGCAGTATGTTATGATGC 58.223 33.333 0.00 0.00 39.31 3.91
6370 21640 0.031111 TGCAGGTAGCTGGGTAGGAT 60.031 55.000 22.69 0.00 45.94 3.24
6989 25744 3.467119 GTACGCGTGCACAGTCCG 61.467 66.667 24.59 15.07 0.00 4.79
7006 25761 2.398554 CGGTCCAGGTTTGCGATGG 61.399 63.158 0.00 0.00 35.30 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.308866 CACCCCTGGATAGTCCTTTGTT 59.691 50.000 0.00 0.00 37.46 2.83
328 330 9.627123 TCTTGGATTTAGTCTCTTTCAAAAAGA 57.373 29.630 2.44 2.44 0.00 2.52
332 334 9.627123 TCTTTCTTGGATTTAGTCTCTTTCAAA 57.373 29.630 0.00 0.00 0.00 2.69
333 335 9.799106 ATCTTTCTTGGATTTAGTCTCTTTCAA 57.201 29.630 0.00 0.00 0.00 2.69
334 336 9.799106 AATCTTTCTTGGATTTAGTCTCTTTCA 57.201 29.630 0.00 0.00 30.26 2.69
361 363 7.227512 CCTCTTCTAAGTTTGCTCTCTCAAAAA 59.772 37.037 0.00 0.00 37.65 1.94
362 364 6.708054 CCTCTTCTAAGTTTGCTCTCTCAAAA 59.292 38.462 0.00 0.00 37.65 2.44
363 365 6.226787 CCTCTTCTAAGTTTGCTCTCTCAAA 58.773 40.000 0.00 0.00 33.94 2.69
364 366 5.279708 CCCTCTTCTAAGTTTGCTCTCTCAA 60.280 44.000 0.00 0.00 0.00 3.02
365 367 4.221703 CCCTCTTCTAAGTTTGCTCTCTCA 59.778 45.833 0.00 0.00 0.00 3.27
366 368 4.464597 TCCCTCTTCTAAGTTTGCTCTCTC 59.535 45.833 0.00 0.00 0.00 3.20
367 369 4.421131 TCCCTCTTCTAAGTTTGCTCTCT 58.579 43.478 0.00 0.00 0.00 3.10
368 370 4.810191 TCCCTCTTCTAAGTTTGCTCTC 57.190 45.455 0.00 0.00 0.00 3.20
369 371 5.770685 AATCCCTCTTCTAAGTTTGCTCT 57.229 39.130 0.00 0.00 0.00 4.09
370 372 6.825944 AAAATCCCTCTTCTAAGTTTGCTC 57.174 37.500 0.00 0.00 0.00 4.26
371 373 8.164070 TCTTAAAATCCCTCTTCTAAGTTTGCT 58.836 33.333 0.00 0.00 0.00 3.91
372 374 8.336801 TCTTAAAATCCCTCTTCTAAGTTTGC 57.663 34.615 0.00 0.00 0.00 3.68
374 376 9.521841 CCTTCTTAAAATCCCTCTTCTAAGTTT 57.478 33.333 0.00 0.00 0.00 2.66
375 377 8.110271 CCCTTCTTAAAATCCCTCTTCTAAGTT 58.890 37.037 0.00 0.00 0.00 2.66
376 378 7.239984 ACCCTTCTTAAAATCCCTCTTCTAAGT 59.760 37.037 0.00 0.00 0.00 2.24
377 379 7.634718 ACCCTTCTTAAAATCCCTCTTCTAAG 58.365 38.462 0.00 0.00 0.00 2.18
378 380 7.584396 ACCCTTCTTAAAATCCCTCTTCTAA 57.416 36.000 0.00 0.00 0.00 2.10
379 381 7.584396 AACCCTTCTTAAAATCCCTCTTCTA 57.416 36.000 0.00 0.00 0.00 2.10
380 382 6.470456 AACCCTTCTTAAAATCCCTCTTCT 57.530 37.500 0.00 0.00 0.00 2.85
381 383 8.645814 TTAAACCCTTCTTAAAATCCCTCTTC 57.354 34.615 0.00 0.00 0.00 2.87
382 384 9.615660 ATTTAAACCCTTCTTAAAATCCCTCTT 57.384 29.630 0.00 0.00 33.26 2.85
383 385 9.035890 CATTTAAACCCTTCTTAAAATCCCTCT 57.964 33.333 0.00 0.00 33.26 3.69
384 386 9.031537 TCATTTAAACCCTTCTTAAAATCCCTC 57.968 33.333 0.00 0.00 33.26 4.30
385 387 8.812972 GTCATTTAAACCCTTCTTAAAATCCCT 58.187 33.333 0.00 0.00 33.26 4.20
386 388 8.038944 GGTCATTTAAACCCTTCTTAAAATCCC 58.961 37.037 0.00 0.00 33.26 3.85
387 389 8.812972 AGGTCATTTAAACCCTTCTTAAAATCC 58.187 33.333 0.00 0.00 37.52 3.01
397 399 7.418597 GGTTTGAAGAAGGTCATTTAAACCCTT 60.419 37.037 12.93 12.93 43.74 3.95
398 400 6.041637 GGTTTGAAGAAGGTCATTTAAACCCT 59.958 38.462 11.28 0.00 43.74 4.34
399 401 6.183360 TGGTTTGAAGAAGGTCATTTAAACCC 60.183 38.462 16.78 0.00 46.52 4.11
400 402 6.811954 TGGTTTGAAGAAGGTCATTTAAACC 58.188 36.000 14.11 14.11 46.90 3.27
401 403 7.042725 GCTTGGTTTGAAGAAGGTCATTTAAAC 60.043 37.037 0.00 0.00 35.38 2.01
402 404 6.983890 GCTTGGTTTGAAGAAGGTCATTTAAA 59.016 34.615 0.00 0.00 0.00 1.52
403 405 6.097554 TGCTTGGTTTGAAGAAGGTCATTTAA 59.902 34.615 0.00 0.00 0.00 1.52
404 406 5.596361 TGCTTGGTTTGAAGAAGGTCATTTA 59.404 36.000 0.00 0.00 0.00 1.40
405 407 4.405358 TGCTTGGTTTGAAGAAGGTCATTT 59.595 37.500 0.00 0.00 0.00 2.32
406 408 3.960102 TGCTTGGTTTGAAGAAGGTCATT 59.040 39.130 0.00 0.00 0.00 2.57
407 409 3.565307 TGCTTGGTTTGAAGAAGGTCAT 58.435 40.909 0.00 0.00 0.00 3.06
408 410 3.011566 TGCTTGGTTTGAAGAAGGTCA 57.988 42.857 0.00 0.00 0.00 4.02
409 411 3.796844 GCTTGCTTGGTTTGAAGAAGGTC 60.797 47.826 0.00 0.00 0.00 3.85
410 412 2.101415 GCTTGCTTGGTTTGAAGAAGGT 59.899 45.455 0.00 0.00 0.00 3.50
411 413 2.546584 GGCTTGCTTGGTTTGAAGAAGG 60.547 50.000 0.00 0.00 0.00 3.46
412 414 2.363359 AGGCTTGCTTGGTTTGAAGAAG 59.637 45.455 0.00 0.00 0.00 2.85
413 415 2.362077 GAGGCTTGCTTGGTTTGAAGAA 59.638 45.455 0.00 0.00 0.00 2.52
414 416 1.956477 GAGGCTTGCTTGGTTTGAAGA 59.044 47.619 0.00 0.00 0.00 2.87
415 417 1.335324 CGAGGCTTGCTTGGTTTGAAG 60.335 52.381 0.00 0.00 0.00 3.02
416 418 0.667993 CGAGGCTTGCTTGGTTTGAA 59.332 50.000 0.00 0.00 0.00 2.69
417 419 0.179032 TCGAGGCTTGCTTGGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
418 420 0.667993 TTCGAGGCTTGCTTGGTTTG 59.332 50.000 0.00 0.00 0.00 2.93
419 421 0.668535 GTTCGAGGCTTGCTTGGTTT 59.331 50.000 0.00 0.00 0.00 3.27
420 422 0.179018 AGTTCGAGGCTTGCTTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
421 423 0.685097 TAGTTCGAGGCTTGCTTGGT 59.315 50.000 0.00 0.00 0.00 3.67
422 424 1.808411 TTAGTTCGAGGCTTGCTTGG 58.192 50.000 0.00 0.00 0.00 3.61
423 425 3.896648 TTTTAGTTCGAGGCTTGCTTG 57.103 42.857 0.00 0.00 0.00 4.01
424 426 3.630312 TGTTTTTAGTTCGAGGCTTGCTT 59.370 39.130 0.00 0.00 0.00 3.91
425 427 3.211045 TGTTTTTAGTTCGAGGCTTGCT 58.789 40.909 0.00 0.00 0.00 3.91
426 428 3.619233 TGTTTTTAGTTCGAGGCTTGC 57.381 42.857 0.00 0.00 0.00 4.01
427 429 6.237728 GGTTTTTGTTTTTAGTTCGAGGCTTG 60.238 38.462 0.00 0.00 0.00 4.01
428 430 5.808540 GGTTTTTGTTTTTAGTTCGAGGCTT 59.191 36.000 0.00 0.00 0.00 4.35
429 431 5.105675 TGGTTTTTGTTTTTAGTTCGAGGCT 60.106 36.000 0.00 0.00 0.00 4.58
430 432 5.005012 GTGGTTTTTGTTTTTAGTTCGAGGC 59.995 40.000 0.00 0.00 0.00 4.70
431 433 6.094061 TGTGGTTTTTGTTTTTAGTTCGAGG 58.906 36.000 0.00 0.00 0.00 4.63
432 434 7.569677 TTGTGGTTTTTGTTTTTAGTTCGAG 57.430 32.000 0.00 0.00 0.00 4.04
433 435 7.941795 TTTGTGGTTTTTGTTTTTAGTTCGA 57.058 28.000 0.00 0.00 0.00 3.71
434 436 9.600646 AATTTTGTGGTTTTTGTTTTTAGTTCG 57.399 25.926 0.00 0.00 0.00 3.95
440 442 9.599866 TCCAAAAATTTTGTGGTTTTTGTTTTT 57.400 22.222 16.32 0.00 46.27 1.94
441 443 9.254133 CTCCAAAAATTTTGTGGTTTTTGTTTT 57.746 25.926 16.32 0.00 46.27 2.43
442 444 8.417106 ACTCCAAAAATTTTGTGGTTTTTGTTT 58.583 25.926 16.32 3.95 46.27 2.83
443 445 7.864882 CACTCCAAAAATTTTGTGGTTTTTGTT 59.135 29.630 16.32 4.21 46.27 2.83
444 446 7.013750 ACACTCCAAAAATTTTGTGGTTTTTGT 59.986 29.630 16.32 12.23 46.27 2.83
445 447 7.366513 ACACTCCAAAAATTTTGTGGTTTTTG 58.633 30.769 16.32 13.48 46.80 2.44
446 448 7.229506 TGACACTCCAAAAATTTTGTGGTTTTT 59.770 29.630 16.32 2.58 37.85 1.94
447 449 6.712547 TGACACTCCAAAAATTTTGTGGTTTT 59.287 30.769 16.32 2.27 33.88 2.43
448 450 6.148645 GTGACACTCCAAAAATTTTGTGGTTT 59.851 34.615 16.32 8.12 33.88 3.27
449 451 5.641636 GTGACACTCCAAAAATTTTGTGGTT 59.358 36.000 16.32 4.31 33.88 3.67
450 452 5.175127 GTGACACTCCAAAAATTTTGTGGT 58.825 37.500 16.32 11.36 33.88 4.16
451 453 5.174395 TGTGACACTCCAAAAATTTTGTGG 58.826 37.500 16.15 18.31 0.00 4.17
452 454 6.098679 TCTGTGACACTCCAAAAATTTTGTG 58.901 36.000 16.15 14.32 0.00 3.33
453 455 6.279513 TCTGTGACACTCCAAAAATTTTGT 57.720 33.333 16.15 0.00 0.00 2.83
454 456 5.232838 GCTCTGTGACACTCCAAAAATTTTG 59.767 40.000 11.24 11.24 0.00 2.44
455 457 5.351458 GCTCTGTGACACTCCAAAAATTTT 58.649 37.500 7.20 0.00 0.00 1.82
456 458 4.202151 GGCTCTGTGACACTCCAAAAATTT 60.202 41.667 7.20 0.00 0.00 1.82
457 459 3.319122 GGCTCTGTGACACTCCAAAAATT 59.681 43.478 7.20 0.00 0.00 1.82
458 460 2.887152 GGCTCTGTGACACTCCAAAAAT 59.113 45.455 7.20 0.00 0.00 1.82
459 461 2.297701 GGCTCTGTGACACTCCAAAAA 58.702 47.619 7.20 0.00 0.00 1.94
460 462 1.476833 GGGCTCTGTGACACTCCAAAA 60.477 52.381 7.20 0.00 0.00 2.44
461 463 0.108585 GGGCTCTGTGACACTCCAAA 59.891 55.000 7.20 0.00 0.00 3.28
462 464 1.754745 GGGCTCTGTGACACTCCAA 59.245 57.895 7.20 0.00 0.00 3.53
463 465 2.217038 GGGGCTCTGTGACACTCCA 61.217 63.158 7.20 0.00 0.00 3.86
464 466 1.768684 TTGGGGCTCTGTGACACTCC 61.769 60.000 7.20 3.07 0.00 3.85
465 467 0.108585 TTTGGGGCTCTGTGACACTC 59.891 55.000 7.20 0.00 0.00 3.51
466 468 0.179018 GTTTGGGGCTCTGTGACACT 60.179 55.000 7.20 0.00 0.00 3.55
467 469 1.172812 GGTTTGGGGCTCTGTGACAC 61.173 60.000 0.00 0.00 0.00 3.67
468 470 1.150536 GGTTTGGGGCTCTGTGACA 59.849 57.895 0.00 0.00 0.00 3.58
469 471 0.890996 CAGGTTTGGGGCTCTGTGAC 60.891 60.000 0.00 0.00 0.00 3.67
470 472 1.455849 CAGGTTTGGGGCTCTGTGA 59.544 57.895 0.00 0.00 0.00 3.58
471 473 1.604593 CCAGGTTTGGGGCTCTGTG 60.605 63.158 0.00 0.00 41.05 3.66
472 474 2.846532 CCAGGTTTGGGGCTCTGT 59.153 61.111 0.00 0.00 41.05 3.41
473 475 2.677875 GCCAGGTTTGGGGCTCTG 60.678 66.667 0.00 0.00 46.74 3.35
478 480 4.305956 AGCTGGCCAGGTTTGGGG 62.306 66.667 31.61 5.74 45.16 4.96
479 481 2.677875 GAGCTGGCCAGGTTTGGG 60.678 66.667 36.40 10.40 45.16 4.12
481 483 2.677875 GGGAGCTGGCCAGGTTTG 60.678 66.667 36.40 12.02 39.57 2.93
482 484 4.351054 CGGGAGCTGGCCAGGTTT 62.351 66.667 36.40 9.54 39.57 3.27
486 488 2.844362 TATCCGGGAGCTGGCCAG 60.844 66.667 29.34 29.34 0.00 4.85
487 489 2.844362 CTATCCGGGAGCTGGCCA 60.844 66.667 4.71 4.71 0.00 5.36
488 490 4.321966 GCTATCCGGGAGCTGGCC 62.322 72.222 18.76 0.00 36.96 5.36
489 491 4.321966 GGCTATCCGGGAGCTGGC 62.322 72.222 23.23 10.55 39.98 4.85
490 492 2.219875 ATGGCTATCCGGGAGCTGG 61.220 63.158 23.23 0.00 39.98 4.85
491 493 1.004080 CATGGCTATCCGGGAGCTG 60.004 63.158 23.23 13.99 39.98 4.24
492 494 2.219875 CCATGGCTATCCGGGAGCT 61.220 63.158 23.23 7.10 39.98 4.09
493 495 2.177594 CTCCATGGCTATCCGGGAGC 62.178 65.000 18.05 18.05 44.39 4.70
494 496 1.978473 CTCCATGGCTATCCGGGAG 59.022 63.158 6.96 8.30 44.70 4.30
495 497 1.536418 CCTCCATGGCTATCCGGGA 60.536 63.158 6.96 0.00 37.06 5.14
496 498 3.072476 CCTCCATGGCTATCCGGG 58.928 66.667 6.96 0.00 34.14 5.73
515 517 5.700373 GGTGTCCATGTTTAACAATGCAATT 59.300 36.000 0.66 0.00 36.63 2.32
516 518 5.237048 GGTGTCCATGTTTAACAATGCAAT 58.763 37.500 0.66 0.00 0.00 3.56
517 519 4.502259 GGGTGTCCATGTTTAACAATGCAA 60.502 41.667 0.66 0.00 0.00 4.08
518 520 3.006323 GGGTGTCCATGTTTAACAATGCA 59.994 43.478 0.66 0.00 0.00 3.96
519 521 3.258123 AGGGTGTCCATGTTTAACAATGC 59.742 43.478 0.66 0.00 34.83 3.56
520 522 5.229423 CAAGGGTGTCCATGTTTAACAATG 58.771 41.667 0.66 1.63 34.83 2.82
521 523 4.262420 GCAAGGGTGTCCATGTTTAACAAT 60.262 41.667 0.66 0.00 34.45 2.71
522 524 3.068873 GCAAGGGTGTCCATGTTTAACAA 59.931 43.478 0.66 0.00 34.45 2.83
523 525 2.625790 GCAAGGGTGTCCATGTTTAACA 59.374 45.455 0.00 0.00 34.45 2.41
524 526 2.029380 GGCAAGGGTGTCCATGTTTAAC 60.029 50.000 0.00 0.00 34.45 2.01
525 527 2.243810 GGCAAGGGTGTCCATGTTTAA 58.756 47.619 0.00 0.00 34.45 1.52
526 528 1.917872 GGCAAGGGTGTCCATGTTTA 58.082 50.000 0.00 0.00 34.45 2.01
527 529 2.745379 GGCAAGGGTGTCCATGTTT 58.255 52.632 0.00 0.00 34.45 2.83
528 530 4.519610 GGCAAGGGTGTCCATGTT 57.480 55.556 0.00 0.00 34.45 2.71
534 536 0.251341 ATCAACTGGGCAAGGGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
535 537 0.540365 CATCAACTGGGCAAGGGTGT 60.540 55.000 0.00 0.00 0.00 4.16
536 538 0.540365 ACATCAACTGGGCAAGGGTG 60.540 55.000 0.00 0.00 0.00 4.61
537 539 0.188342 AACATCAACTGGGCAAGGGT 59.812 50.000 0.00 0.00 0.00 4.34
538 540 1.818674 GTAACATCAACTGGGCAAGGG 59.181 52.381 0.00 0.00 0.00 3.95
539 541 2.513753 TGTAACATCAACTGGGCAAGG 58.486 47.619 0.00 0.00 0.00 3.61
540 542 4.789012 ATTGTAACATCAACTGGGCAAG 57.211 40.909 0.00 0.00 0.00 4.01
541 543 4.343526 ACAATTGTAACATCAACTGGGCAA 59.656 37.500 9.97 0.00 30.31 4.52
542 544 3.894427 ACAATTGTAACATCAACTGGGCA 59.106 39.130 9.97 0.00 30.31 5.36
543 545 4.519540 ACAATTGTAACATCAACTGGGC 57.480 40.909 9.97 0.00 30.31 5.36
544 546 7.279758 ACAAAAACAATTGTAACATCAACTGGG 59.720 33.333 12.39 0.00 41.56 4.45
545 547 8.195617 ACAAAAACAATTGTAACATCAACTGG 57.804 30.769 12.39 0.00 41.56 4.00
546 548 8.327429 GGACAAAAACAATTGTAACATCAACTG 58.673 33.333 12.39 2.57 43.31 3.16
547 549 7.221838 CGGACAAAAACAATTGTAACATCAACT 59.778 33.333 12.39 0.00 43.31 3.16
548 550 7.334009 CGGACAAAAACAATTGTAACATCAAC 58.666 34.615 12.39 0.00 43.31 3.18
549 551 6.019479 GCGGACAAAAACAATTGTAACATCAA 60.019 34.615 12.39 0.00 43.31 2.57
550 552 5.460419 GCGGACAAAAACAATTGTAACATCA 59.540 36.000 12.39 0.00 43.31 3.07
551 553 5.460419 TGCGGACAAAAACAATTGTAACATC 59.540 36.000 12.39 6.40 43.31 3.06
552 554 5.233263 GTGCGGACAAAAACAATTGTAACAT 59.767 36.000 12.39 0.00 43.31 2.71
553 555 4.563184 GTGCGGACAAAAACAATTGTAACA 59.437 37.500 12.39 0.00 43.31 2.41
554 556 4.026393 GGTGCGGACAAAAACAATTGTAAC 60.026 41.667 12.39 0.42 43.31 2.50
555 557 4.113354 GGTGCGGACAAAAACAATTGTAA 58.887 39.130 12.39 0.00 43.31 2.41
556 558 3.491104 GGGTGCGGACAAAAACAATTGTA 60.491 43.478 12.39 0.00 43.31 2.41
557 559 2.545731 GGTGCGGACAAAAACAATTGT 58.454 42.857 9.96 4.92 45.82 2.71
558 560 1.864082 GGGTGCGGACAAAAACAATTG 59.136 47.619 9.96 3.24 36.37 2.32
559 561 1.537135 CGGGTGCGGACAAAAACAATT 60.537 47.619 9.96 0.00 0.00 2.32
560 562 0.031449 CGGGTGCGGACAAAAACAAT 59.969 50.000 9.96 0.00 0.00 2.71
561 563 1.030488 TCGGGTGCGGACAAAAACAA 61.030 50.000 9.96 0.00 0.00 2.83
562 564 1.440938 CTCGGGTGCGGACAAAAACA 61.441 55.000 9.96 0.00 0.00 2.83
563 565 1.281656 CTCGGGTGCGGACAAAAAC 59.718 57.895 9.96 0.00 0.00 2.43
564 566 2.548295 GCTCGGGTGCGGACAAAAA 61.548 57.895 9.96 0.00 0.00 1.94
565 567 2.975799 GCTCGGGTGCGGACAAAA 60.976 61.111 9.96 0.00 0.00 2.44
573 575 2.280186 CCTAATCCGCTCGGGTGC 60.280 66.667 8.59 0.00 37.00 5.01
574 576 0.748450 TAACCTAATCCGCTCGGGTG 59.252 55.000 8.59 0.00 37.00 4.61
575 577 1.488390 TTAACCTAATCCGCTCGGGT 58.512 50.000 8.59 0.00 37.00 5.28
576 578 2.607631 TTTAACCTAATCCGCTCGGG 57.392 50.000 8.59 0.00 35.59 5.14
577 579 3.497262 GGATTTTAACCTAATCCGCTCGG 59.503 47.826 1.14 1.14 41.05 4.63
578 580 4.727235 GGATTTTAACCTAATCCGCTCG 57.273 45.455 2.39 0.00 41.05 5.03
603 605 3.118408 TCGTTGATCCCTTTCATGGTAGG 60.118 47.826 6.96 6.96 0.00 3.18
604 606 4.122776 CTCGTTGATCCCTTTCATGGTAG 58.877 47.826 0.00 0.00 0.00 3.18
605 607 3.118408 CCTCGTTGATCCCTTTCATGGTA 60.118 47.826 0.00 0.00 0.00 3.25
606 608 2.356125 CCTCGTTGATCCCTTTCATGGT 60.356 50.000 0.00 0.00 0.00 3.55
607 609 2.092968 TCCTCGTTGATCCCTTTCATGG 60.093 50.000 0.00 0.00 0.00 3.66
608 610 3.266510 TCCTCGTTGATCCCTTTCATG 57.733 47.619 0.00 0.00 0.00 3.07
609 611 3.610911 GTTCCTCGTTGATCCCTTTCAT 58.389 45.455 0.00 0.00 0.00 2.57
610 612 2.290071 GGTTCCTCGTTGATCCCTTTCA 60.290 50.000 0.00 0.00 0.00 2.69
611 613 2.290071 TGGTTCCTCGTTGATCCCTTTC 60.290 50.000 0.00 0.00 0.00 2.62
612 614 1.702957 TGGTTCCTCGTTGATCCCTTT 59.297 47.619 0.00 0.00 0.00 3.11
613 615 1.358152 TGGTTCCTCGTTGATCCCTT 58.642 50.000 0.00 0.00 0.00 3.95
614 616 1.358152 TTGGTTCCTCGTTGATCCCT 58.642 50.000 0.00 0.00 0.00 4.20
615 617 2.194201 TTTGGTTCCTCGTTGATCCC 57.806 50.000 0.00 0.00 0.00 3.85
616 618 4.783764 AAATTTGGTTCCTCGTTGATCC 57.216 40.909 0.00 0.00 0.00 3.36
617 619 4.385748 GCAAAATTTGGTTCCTCGTTGATC 59.614 41.667 7.89 0.00 0.00 2.92
618 620 4.202202 TGCAAAATTTGGTTCCTCGTTGAT 60.202 37.500 7.89 0.00 0.00 2.57
619 621 3.131223 TGCAAAATTTGGTTCCTCGTTGA 59.869 39.130 7.89 0.00 0.00 3.18
620 622 3.245048 GTGCAAAATTTGGTTCCTCGTTG 59.755 43.478 7.89 0.00 0.00 4.10
621 623 3.453424 GTGCAAAATTTGGTTCCTCGTT 58.547 40.909 7.89 0.00 0.00 3.85
622 624 2.223947 GGTGCAAAATTTGGTTCCTCGT 60.224 45.455 7.89 0.00 0.00 4.18
623 625 2.223923 TGGTGCAAAATTTGGTTCCTCG 60.224 45.455 7.89 0.00 0.00 4.63
624 626 3.392882 CTGGTGCAAAATTTGGTTCCTC 58.607 45.455 7.89 0.00 0.00 3.71
625 627 2.485302 GCTGGTGCAAAATTTGGTTCCT 60.485 45.455 7.89 0.00 39.41 3.36
626 628 1.872952 GCTGGTGCAAAATTTGGTTCC 59.127 47.619 7.89 0.00 39.41 3.62
627 629 1.526464 CGCTGGTGCAAAATTTGGTTC 59.474 47.619 7.89 0.00 39.64 3.62
628 630 1.580815 CGCTGGTGCAAAATTTGGTT 58.419 45.000 7.89 0.00 39.64 3.67
629 631 0.879839 GCGCTGGTGCAAAATTTGGT 60.880 50.000 7.89 0.00 39.64 3.67
630 632 1.567746 GGCGCTGGTGCAAAATTTGG 61.568 55.000 7.64 0.00 39.64 3.28
631 633 1.861440 GGCGCTGGTGCAAAATTTG 59.139 52.632 7.64 0.57 39.64 2.32
632 634 1.664333 CGGCGCTGGTGCAAAATTT 60.664 52.632 8.83 0.00 39.64 1.82
633 635 2.049248 CGGCGCTGGTGCAAAATT 60.049 55.556 8.83 0.00 39.64 1.82
634 636 2.981560 CTCGGCGCTGGTGCAAAAT 61.982 57.895 17.88 0.00 39.64 1.82
635 637 3.659092 CTCGGCGCTGGTGCAAAA 61.659 61.111 17.88 0.00 39.64 2.44
655 657 4.582701 TTACAGACCCTGTGCAAAATTG 57.417 40.909 9.64 0.00 45.01 2.32
663 665 1.463674 GGGCATTTACAGACCCTGTG 58.536 55.000 9.64 0.00 45.01 3.66
678 680 0.681887 TGACGATTCTAGGTCGGGCA 60.682 55.000 18.28 13.89 43.06 5.36
762 765 8.856490 ACAAAAATACACATCTGAGTTTTGAC 57.144 30.769 12.11 0.00 0.00 3.18
893 896 3.924144 GCATAGCTGCTAGCAGTATCTT 58.076 45.455 37.91 23.16 45.56 2.40
918 928 1.473278 GAGGACGGTAACTCTCCAGTG 59.527 57.143 5.38 0.00 34.30 3.66
926 936 3.048941 GAGCGCGAGGACGGTAACT 62.049 63.158 12.10 0.00 45.00 2.24
945 955 2.624838 AGACGACGACCTTCTTTTGGTA 59.375 45.455 0.00 0.00 38.03 3.25
952 962 1.249469 GGGGAAGACGACGACCTTCT 61.249 60.000 23.15 7.15 38.92 2.85
973 983 3.258372 TGCGAGTTGGAATTCAGAGTACT 59.742 43.478 7.93 0.00 0.00 2.73
974 984 3.585862 TGCGAGTTGGAATTCAGAGTAC 58.414 45.455 7.93 0.00 0.00 2.73
975 985 3.953712 TGCGAGTTGGAATTCAGAGTA 57.046 42.857 7.93 0.00 0.00 2.59
995 1008 2.029828 GGAGTACGATCTGATTGGCGAT 60.030 50.000 9.61 0.00 0.00 4.58
1037 1050 2.845550 CGATCTGATGGGCGACGGA 61.846 63.158 0.00 0.00 0.00 4.69
1309 1796 1.064946 CCGCCGTTTGCAAGAAACA 59.935 52.632 0.00 0.00 41.33 2.83
1349 1836 1.673168 GATCCTGAATTGGAGCGCTT 58.327 50.000 13.26 0.00 39.78 4.68
1388 1877 5.123936 GGGTGAGGACCTATGTGTATTTTC 58.876 45.833 0.00 0.00 42.66 2.29
1409 2441 4.081972 CGATGGGTAGATAGAAGACATGGG 60.082 50.000 0.00 0.00 0.00 4.00
1442 2482 1.163420 CGGTGCGGCAGCCATTAATA 61.163 55.000 24.71 0.00 44.33 0.98
1483 2523 0.108424 ATGGTGCTGAGCTTCGTCTC 60.108 55.000 5.83 0.00 0.00 3.36
1492 2532 1.271325 TGGTTGTACCATGGTGCTGAG 60.271 52.381 29.82 0.00 44.79 3.35
1506 2546 3.508845 ACTGAGCATAGGTTTGGTTGT 57.491 42.857 0.00 0.00 0.00 3.32
1512 2552 2.829720 TGACGGTACTGAGCATAGGTTT 59.170 45.455 9.17 0.00 0.00 3.27
1591 2631 5.838531 AGCATCAAGGTAGACAGTAGTAC 57.161 43.478 0.00 0.00 0.00 2.73
1851 5239 2.392662 TCTATCTCTTGGACCAGGCAG 58.607 52.381 0.00 0.00 0.00 4.85
1852 5240 2.550277 TCTATCTCTTGGACCAGGCA 57.450 50.000 0.00 0.00 0.00 4.75
1853 5241 3.553922 CGATTCTATCTCTTGGACCAGGC 60.554 52.174 0.00 0.00 0.00 4.85
1854 5242 3.891977 TCGATTCTATCTCTTGGACCAGG 59.108 47.826 0.00 0.00 0.00 4.45
1855 5243 5.521906 TTCGATTCTATCTCTTGGACCAG 57.478 43.478 0.00 0.00 0.00 4.00
1890 5278 7.998212 GTGAAGAAGATTTTATTGTGTTTTGCG 59.002 33.333 0.00 0.00 0.00 4.85
2001 5390 0.790207 CCGATATTCGTCATTGCCCG 59.210 55.000 0.00 0.00 38.40 6.13
2053 5443 3.047280 GCACACGGAACCATGCGA 61.047 61.111 0.00 0.00 43.91 5.10
2104 5495 1.675641 GTGCTTCATGGAGCCCGTT 60.676 57.895 23.49 0.00 42.01 4.44
2211 5604 4.370049 TGCATGTTGATGTCAAGGTTTTG 58.630 39.130 0.00 0.00 36.39 2.44
2365 5762 8.037758 GTCCCTATCGTGATGAGATGATTTTAT 58.962 37.037 0.00 0.00 0.00 1.40
2366 5763 7.233553 AGTCCCTATCGTGATGAGATGATTTTA 59.766 37.037 0.00 0.00 0.00 1.52
2506 5926 6.438741 TCAAATATAGCCATGAGAGGTCTAGG 59.561 42.308 0.00 0.00 0.00 3.02
2723 6145 5.008415 ACATCCGAATGATCAAAGCAAGATC 59.992 40.000 0.00 6.21 41.72 2.75
3054 6495 6.782298 TTTTGTAACGTTTCATGATCGGTA 57.218 33.333 5.91 16.17 0.00 4.02
3577 7115 6.597672 TCGAAATAACTTACCACATGCATCTT 59.402 34.615 0.00 0.00 0.00 2.40
3596 7134 0.552848 ATCATGCCCCCACTCGAAAT 59.447 50.000 0.00 0.00 0.00 2.17
3716 7255 8.099364 GTGAAACTGTAGATTGAAAGGAATCA 57.901 34.615 0.00 0.00 35.16 2.57
3806 7345 4.164030 TCTTCCTGCAATACCAGATGCTTA 59.836 41.667 0.00 0.00 42.97 3.09
3868 7408 4.080975 CCTTCTCCAGCTTCTCATTCTTCT 60.081 45.833 0.00 0.00 0.00 2.85
4058 12834 8.680039 TTTCTCTTTAAGTTTTTCATACCCGA 57.320 30.769 0.00 0.00 0.00 5.14
4151 12929 4.032960 TGGCACTCTACACATGGAAAAT 57.967 40.909 0.00 0.00 0.00 1.82
4222 13000 0.624795 GGGGGAGGGAGGTGATCTTT 60.625 60.000 0.00 0.00 0.00 2.52
4746 15343 7.297936 TGTTCTAAGTGAATCCAACAGTAGA 57.702 36.000 0.00 0.00 36.99 2.59
4824 15421 5.378230 TTGTTGGATGCTTAGAGATGGAT 57.622 39.130 0.00 0.00 0.00 3.41
5011 15615 6.237901 TCCATGCAAAGTCTAAGTACAATGT 58.762 36.000 0.00 0.00 0.00 2.71
5813 18252 7.075009 ACCAATCTCCCATTACCCAATAACTAT 59.925 37.037 0.00 0.00 0.00 2.12
6202 21460 3.783943 CGCGTGAAAATAACAGTAATGGC 59.216 43.478 0.00 0.00 0.00 4.40
6299 21561 4.995487 GGTCTACTGTTTTCTTACCCACAG 59.005 45.833 0.00 0.00 42.08 3.66
6314 21584 0.388649 GCTGTGACCACGGTCTACTG 60.389 60.000 16.88 15.77 44.80 2.74
6942 25697 1.728323 TCATGGACTTGGAGGTGACA 58.272 50.000 0.00 0.00 0.00 3.58
6989 25744 1.303317 ACCATCGCAAACCTGGACC 60.303 57.895 0.00 0.00 34.08 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.