Multiple sequence alignment - TraesCS3B01G530300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G530300 chr3B 100.000 4125 0 0 1 4125 771403284 771399160 0.000000e+00 7618.0
1 TraesCS3B01G530300 chr3B 85.455 1485 174 20 1901 3361 771388397 771386931 0.000000e+00 1507.0
2 TraesCS3B01G530300 chr3B 76.146 1287 226 46 1928 3177 771518954 771517712 5.900000e-168 601.0
3 TraesCS3B01G530300 chr3B 75.592 676 113 25 2724 3363 771342882 771342223 1.880000e-73 287.0
4 TraesCS3B01G530300 chr3B 79.570 279 52 2 1186 1464 771390167 771389894 1.170000e-45 195.0
5 TraesCS3B01G530300 chr3B 78.161 174 34 2 1301 1474 771325860 771325691 1.570000e-19 108.0
6 TraesCS3B01G530300 chr3A 94.251 1635 81 7 1774 3399 713681514 713679884 0.000000e+00 2486.0
7 TraesCS3B01G530300 chr3A 82.337 1438 188 34 1962 3369 713664798 713663397 0.000000e+00 1188.0
8 TraesCS3B01G530300 chr3A 91.852 810 57 7 385 1188 713682794 713681988 0.000000e+00 1122.0
9 TraesCS3B01G530300 chr3A 75.667 1500 248 65 1913 3356 713842230 713840792 1.250000e-179 640.0
10 TraesCS3B01G530300 chr3A 92.117 444 32 2 1181 1623 713681937 713681496 1.260000e-174 623.0
11 TraesCS3B01G530300 chr3A 92.953 298 18 2 3355 3651 713679898 713679603 8.190000e-117 431.0
12 TraesCS3B01G530300 chr3A 88.562 306 14 9 3 302 713683132 713682842 6.560000e-93 351.0
13 TraesCS3B01G530300 chr3A 83.077 325 51 2 823 1147 713844132 713843812 4.030000e-75 292.0
14 TraesCS3B01G530300 chr3A 86.111 252 14 7 3674 3925 713679438 713679208 6.850000e-63 252.0
15 TraesCS3B01G530300 chr3A 85.854 205 28 1 3922 4125 713678947 713678743 2.500000e-52 217.0
16 TraesCS3B01G530300 chr3A 76.000 375 56 20 2797 3158 713833002 713832649 3.300000e-36 163.0
17 TraesCS3B01G530300 chr3A 77.720 193 39 2 1282 1474 713632273 713632085 9.370000e-22 115.0
18 TraesCS3B01G530300 chr3A 82.569 109 19 0 3012 3120 713555870 713555762 3.390000e-16 97.1
19 TraesCS3B01G530300 chr3D 93.215 1179 48 14 2475 3651 578143503 578142355 0.000000e+00 1705.0
20 TraesCS3B01G530300 chr3D 88.770 1211 81 17 1 1188 578145796 578144618 0.000000e+00 1432.0
21 TraesCS3B01G530300 chr3D 81.358 1620 234 40 1774 3369 578106322 578104747 0.000000e+00 1256.0
22 TraesCS3B01G530300 chr3D 95.963 644 21 3 1777 2419 578144139 578143500 0.000000e+00 1040.0
23 TraesCS3B01G530300 chr3D 76.203 1496 244 55 1913 3356 578219074 578217639 0.000000e+00 688.0
24 TraesCS3B01G530300 chr3D 92.466 438 30 3 1188 1623 578144560 578144124 1.260000e-174 623.0
25 TraesCS3B01G530300 chr3D 86.780 469 39 12 3665 4125 578142133 578141680 6.160000e-138 501.0
26 TraesCS3B01G530300 chr3D 75.369 1015 169 47 2379 3367 578178670 578177711 8.250000e-112 414.0
27 TraesCS3B01G530300 chr3D 78.670 436 87 6 1972 2403 577863099 577863532 6.750000e-73 285.0
28 TraesCS3B01G530300 chr3D 78.436 422 71 10 758 1177 578167982 578167579 1.470000e-64 257.0
29 TraesCS3B01G530300 chr3D 77.233 347 59 10 1191 1520 578162414 578162071 7.040000e-43 185.0
30 TraesCS3B01G530300 chr3D 77.955 313 50 6 1186 1483 578106688 578106380 1.180000e-40 178.0
31 TraesCS3B01G530300 chr3D 78.231 294 45 6 1186 1464 577861219 577861508 1.970000e-38 171.0
32 TraesCS3B01G530300 chr3D 78.736 174 33 2 1301 1474 578065770 578065601 3.370000e-21 113.0
33 TraesCS3B01G530300 chr3D 78.161 174 34 2 1301 1474 577882525 577882694 1.570000e-19 108.0
34 TraesCS3B01G530300 chr3D 77.596 183 33 8 3012 3193 577826647 577826472 2.030000e-18 104.0
35 TraesCS3B01G530300 chr5B 97.452 157 4 0 1623 1779 690679694 690679538 6.800000e-68 268.0
36 TraesCS3B01G530300 chr5A 96.875 160 5 0 1624 1783 33872996 33873155 6.800000e-68 268.0
37 TraesCS3B01G530300 chr5A 96.835 158 5 0 1624 1781 472588247 472588404 8.790000e-67 265.0
38 TraesCS3B01G530300 chr5A 93.750 176 8 2 1607 1779 437033847 437034022 1.140000e-65 261.0
39 TraesCS3B01G530300 chr1B 96.894 161 4 1 1624 1784 600258947 600259106 6.800000e-68 268.0
40 TraesCS3B01G530300 chr1B 74.419 258 55 7 776 1029 506125200 506124950 2.620000e-17 100.0
41 TraesCS3B01G530300 chr2B 97.436 156 4 0 1624 1779 186376126 186376281 2.440000e-67 267.0
42 TraesCS3B01G530300 chr2B 97.436 156 4 0 1622 1777 262870141 262870296 2.440000e-67 267.0
43 TraesCS3B01G530300 chr4B 94.186 172 8 1 1610 1779 572045098 572045269 1.140000e-65 261.0
44 TraesCS3B01G530300 chr4A 91.257 183 14 2 1599 1779 11755998 11756180 8.850000e-62 248.0
45 TraesCS3B01G530300 chr4A 82.206 281 39 8 873 1149 45105469 45105196 8.920000e-57 231.0
46 TraesCS3B01G530300 chr4A 80.292 274 43 8 874 1143 46283205 46283471 3.250000e-46 196.0
47 TraesCS3B01G530300 chr1D 79.167 288 47 6 873 1155 348147918 348147639 1.960000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G530300 chr3B 771399160 771403284 4124 True 7618.000000 7618 100.000000 1 4125 1 chr3B.!!$R3 4124
1 TraesCS3B01G530300 chr3B 771386931 771390167 3236 True 851.000000 1507 82.512500 1186 3361 2 chr3B.!!$R5 2175
2 TraesCS3B01G530300 chr3B 771517712 771518954 1242 True 601.000000 601 76.146000 1928 3177 1 chr3B.!!$R4 1249
3 TraesCS3B01G530300 chr3B 771342223 771342882 659 True 287.000000 287 75.592000 2724 3363 1 chr3B.!!$R2 639
4 TraesCS3B01G530300 chr3A 713663397 713664798 1401 True 1188.000000 1188 82.337000 1962 3369 1 chr3A.!!$R3 1407
5 TraesCS3B01G530300 chr3A 713678743 713683132 4389 True 783.142857 2486 90.242857 3 4125 7 chr3A.!!$R5 4122
6 TraesCS3B01G530300 chr3A 713840792 713844132 3340 True 466.000000 640 79.372000 823 3356 2 chr3A.!!$R6 2533
7 TraesCS3B01G530300 chr3D 578141680 578145796 4116 True 1060.200000 1705 91.438800 1 4125 5 chr3D.!!$R8 4124
8 TraesCS3B01G530300 chr3D 578104747 578106688 1941 True 717.000000 1256 79.656500 1186 3369 2 chr3D.!!$R7 2183
9 TraesCS3B01G530300 chr3D 578217639 578219074 1435 True 688.000000 688 76.203000 1913 3356 1 chr3D.!!$R6 1443
10 TraesCS3B01G530300 chr3D 578177711 578178670 959 True 414.000000 414 75.369000 2379 3367 1 chr3D.!!$R5 988
11 TraesCS3B01G530300 chr3D 577861219 577863532 2313 False 228.000000 285 78.450500 1186 2403 2 chr3D.!!$F2 1217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 661 0.250209 CCGATGGAGCTCCCTTCATG 60.250 60.0 29.95 15.46 37.42 3.07 F
1162 1206 0.522626 TCAGCATGGCGATGTTGTTG 59.477 50.0 21.45 10.55 40.65 3.33 F
1769 4419 0.035056 GGTGCTAGTGCCCATGAGTT 60.035 55.0 0.00 0.00 38.71 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 4400 0.035056 AACTCATGGGCACTAGCACC 60.035 55.0 0.00 0.0 46.13 5.01 R
2306 6199 0.109365 CCGCGATTTGTGCCAATGAA 60.109 50.0 8.23 0.0 0.00 2.57 R
3658 7869 0.250124 ACGAGGCAATTCACGGACAA 60.250 50.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.800993 GCTATTAGCTAGGCATGATACACG 59.199 45.833 8.47 0.00 38.45 4.49
49 50 3.660501 TTAGCTAGGCATGATACACGG 57.339 47.619 0.00 0.00 0.00 4.94
50 51 0.681733 AGCTAGGCATGATACACGGG 59.318 55.000 0.00 0.00 0.00 5.28
51 52 0.679505 GCTAGGCATGATACACGGGA 59.320 55.000 0.00 0.00 0.00 5.14
52 53 1.070134 GCTAGGCATGATACACGGGAA 59.930 52.381 0.00 0.00 0.00 3.97
53 54 2.755650 CTAGGCATGATACACGGGAAC 58.244 52.381 0.00 0.00 0.00 3.62
54 55 1.204146 AGGCATGATACACGGGAACT 58.796 50.000 0.00 0.00 0.00 3.01
55 56 1.559682 AGGCATGATACACGGGAACTT 59.440 47.619 0.00 0.00 0.00 2.66
56 57 2.026262 AGGCATGATACACGGGAACTTT 60.026 45.455 0.00 0.00 0.00 2.66
57 58 2.354821 GGCATGATACACGGGAACTTTC 59.645 50.000 0.00 0.00 0.00 2.62
58 59 3.270877 GCATGATACACGGGAACTTTCT 58.729 45.455 0.00 0.00 0.00 2.52
59 60 3.063997 GCATGATACACGGGAACTTTCTG 59.936 47.826 0.00 0.00 0.00 3.02
159 164 2.880268 CTGTGCACACTCTGAATTTCCA 59.120 45.455 17.42 0.00 0.00 3.53
298 305 5.080969 TGAAAATACAAGAGGGGTCTACG 57.919 43.478 0.00 0.00 0.00 3.51
316 323 6.338937 GTCTACGTGATGAAAAGGGTCTATT 58.661 40.000 0.00 0.00 0.00 1.73
345 355 7.542534 AAATGTTCGGTAATATCTACGCAAA 57.457 32.000 0.00 0.00 0.00 3.68
383 393 5.450965 GCAAATTATGTTGTCCTGAGGATGG 60.451 44.000 3.65 0.00 32.73 3.51
422 461 2.888212 TGCTAAAGGAAATTGCCACCT 58.112 42.857 4.92 0.00 35.36 4.00
424 463 3.006752 TGCTAAAGGAAATTGCCACCTTG 59.993 43.478 4.92 0.00 42.25 3.61
443 482 1.135546 TGGCGACAACATAATTTGCCG 60.136 47.619 0.00 0.00 43.83 5.69
519 559 9.959749 GTAGTGAAATCCAAAAAGTTATGTTGA 57.040 29.630 0.00 0.00 0.00 3.18
621 661 0.250209 CCGATGGAGCTCCCTTCATG 60.250 60.000 29.95 15.46 37.42 3.07
692 732 3.449018 GCTAGGATGGAAGAACTGTCAGA 59.551 47.826 6.91 0.00 0.00 3.27
693 733 3.971245 AGGATGGAAGAACTGTCAGAC 57.029 47.619 6.91 0.00 0.00 3.51
694 734 3.515562 AGGATGGAAGAACTGTCAGACT 58.484 45.455 6.91 2.77 0.00 3.24
695 735 4.678256 AGGATGGAAGAACTGTCAGACTA 58.322 43.478 6.91 0.00 0.00 2.59
715 755 7.388776 CAGACTATGGATGTTTTGAGTTCTTCA 59.611 37.037 0.00 0.00 0.00 3.02
813 854 5.487433 TCCATTTCTACGCTTTGATCTTCA 58.513 37.500 0.00 0.00 0.00 3.02
869 913 5.362430 TGTTTCCAACAGCTGTTTAATCCTT 59.638 36.000 29.23 3.14 36.25 3.36
894 938 2.856222 CAGAGGCTTCCTGACAAGTTT 58.144 47.619 0.00 0.00 31.76 2.66
932 976 0.742281 CGTGAGCCCCATGAAGTGAG 60.742 60.000 0.00 0.00 33.60 3.51
969 1013 2.514592 CGGCATCGCTTGTGGGAT 60.515 61.111 0.00 0.00 45.09 3.85
1035 1079 2.853316 TGGGAGCAGTTTGCCCAT 59.147 55.556 0.00 0.00 46.57 4.00
1038 1082 2.277591 GGAGCAGTTTGCCCATGCA 61.278 57.895 0.00 0.00 46.52 3.96
1160 1204 2.216046 CTATCAGCATGGCGATGTTGT 58.784 47.619 21.45 13.19 40.65 3.32
1162 1206 0.522626 TCAGCATGGCGATGTTGTTG 59.477 50.000 21.45 10.55 40.65 3.33
1347 2577 5.060662 TGTGATCTTACAGTAGCACAGAC 57.939 43.478 0.00 0.00 33.00 3.51
1452 2778 1.336240 GCGTGGTACTCTGGTACGTTT 60.336 52.381 0.00 0.00 46.62 3.60
1485 4131 2.029470 CGCATTCTCTATCTCCCACCTC 60.029 54.545 0.00 0.00 0.00 3.85
1495 4141 7.288852 TCTCTATCTCCCACCTCTTAATTTCTG 59.711 40.741 0.00 0.00 0.00 3.02
1527 4173 8.817092 TTGTAATTCCTTAACCCCTAATGAAG 57.183 34.615 0.00 0.00 30.57 3.02
1535 4181 6.719829 CCTTAACCCCTAATGAAGTGAAAAGT 59.280 38.462 0.00 0.00 0.00 2.66
1538 4184 5.454966 ACCCCTAATGAAGTGAAAAGTTGT 58.545 37.500 0.00 0.00 0.00 3.32
1634 4284 7.906199 ATCATACAGTTTAGAGAACTAGGCT 57.094 36.000 0.00 0.00 0.00 4.58
1635 4285 7.101652 TCATACAGTTTAGAGAACTAGGCTG 57.898 40.000 0.00 0.00 37.75 4.85
1636 4286 6.663953 TCATACAGTTTAGAGAACTAGGCTGT 59.336 38.462 0.00 1.37 42.22 4.40
1637 4287 7.832685 TCATACAGTTTAGAGAACTAGGCTGTA 59.167 37.037 16.59 16.59 43.12 2.74
1638 4288 6.518208 ACAGTTTAGAGAACTAGGCTGTAG 57.482 41.667 0.00 0.00 40.21 2.74
1639 4289 5.105675 ACAGTTTAGAGAACTAGGCTGTAGC 60.106 44.000 0.00 0.00 40.21 3.58
1656 4306 2.187946 CCTAGTGGCAAGGGAGCG 59.812 66.667 0.00 0.00 34.64 5.03
1657 4307 2.512515 CTAGTGGCAAGGGAGCGC 60.513 66.667 0.00 0.00 34.64 5.92
1658 4308 3.315142 CTAGTGGCAAGGGAGCGCA 62.315 63.158 11.47 0.00 34.64 6.09
1659 4309 3.315142 TAGTGGCAAGGGAGCGCAG 62.315 63.158 11.47 0.00 34.64 5.18
1677 4327 3.555324 TGGCGTCTCCAGCAACCA 61.555 61.111 0.00 0.00 40.72 3.67
1678 4328 2.743928 GGCGTCTCCAGCAACCAG 60.744 66.667 0.00 0.00 36.08 4.00
1679 4329 2.743928 GCGTCTCCAGCAACCAGG 60.744 66.667 0.00 0.00 34.19 4.45
1680 4330 2.046892 CGTCTCCAGCAACCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
1681 4331 2.883828 CGTCTCCAGCAACCAGGGT 61.884 63.158 0.00 0.00 0.00 4.34
1682 4332 1.456287 GTCTCCAGCAACCAGGGTT 59.544 57.895 0.00 0.00 39.13 4.11
1683 4333 0.606673 GTCTCCAGCAACCAGGGTTC 60.607 60.000 0.00 0.00 36.00 3.62
1684 4334 1.672356 CTCCAGCAACCAGGGTTCG 60.672 63.158 0.00 0.00 36.00 3.95
1685 4335 2.111999 CTCCAGCAACCAGGGTTCGA 62.112 60.000 0.00 0.00 36.00 3.71
1686 4336 1.672356 CCAGCAACCAGGGTTCGAG 60.672 63.158 0.00 0.00 36.00 4.04
1687 4337 2.032681 AGCAACCAGGGTTCGAGC 59.967 61.111 0.00 2.37 36.00 5.03
1688 4338 3.056328 GCAACCAGGGTTCGAGCC 61.056 66.667 10.28 10.28 36.00 4.70
1689 4339 2.429930 CAACCAGGGTTCGAGCCA 59.570 61.111 20.67 0.00 38.48 4.75
1690 4340 1.966451 CAACCAGGGTTCGAGCCAC 60.966 63.158 20.67 9.47 38.48 5.01
1691 4341 3.530910 AACCAGGGTTCGAGCCACG 62.531 63.158 20.67 9.76 38.48 4.94
1692 4342 4.003788 CCAGGGTTCGAGCCACGT 62.004 66.667 20.67 0.71 43.13 4.49
1693 4343 2.432628 CAGGGTTCGAGCCACGTC 60.433 66.667 20.67 2.28 43.13 4.34
1694 4344 4.052229 AGGGTTCGAGCCACGTCG 62.052 66.667 20.67 0.00 43.13 5.12
1715 4365 4.884458 GGGGACGAATTTCTCATTTCTC 57.116 45.455 0.00 0.00 0.00 2.87
1716 4366 4.261801 GGGGACGAATTTCTCATTTCTCA 58.738 43.478 0.00 0.00 0.00 3.27
1717 4367 4.095036 GGGGACGAATTTCTCATTTCTCAC 59.905 45.833 0.00 0.00 0.00 3.51
1718 4368 4.695455 GGGACGAATTTCTCATTTCTCACA 59.305 41.667 0.00 0.00 0.00 3.58
1719 4369 5.181245 GGGACGAATTTCTCATTTCTCACAA 59.819 40.000 0.00 0.00 0.00 3.33
1720 4370 6.310197 GGACGAATTTCTCATTTCTCACAAG 58.690 40.000 0.00 0.00 0.00 3.16
1721 4371 6.246420 ACGAATTTCTCATTTCTCACAAGG 57.754 37.500 0.00 0.00 0.00 3.61
1722 4372 5.182001 ACGAATTTCTCATTTCTCACAAGGG 59.818 40.000 0.00 0.00 0.00 3.95
1723 4373 5.412594 CGAATTTCTCATTTCTCACAAGGGA 59.587 40.000 0.00 0.00 0.00 4.20
1724 4374 6.094603 CGAATTTCTCATTTCTCACAAGGGAT 59.905 38.462 0.00 0.00 0.00 3.85
1725 4375 6.770746 ATTTCTCATTTCTCACAAGGGATG 57.229 37.500 0.00 0.00 0.00 3.51
1726 4376 3.614092 TCTCATTTCTCACAAGGGATGC 58.386 45.455 0.00 0.00 0.00 3.91
1727 4377 3.265221 TCTCATTTCTCACAAGGGATGCT 59.735 43.478 0.00 0.00 0.00 3.79
1728 4378 4.015084 CTCATTTCTCACAAGGGATGCTT 58.985 43.478 0.00 0.00 0.00 3.91
1729 4379 4.012374 TCATTTCTCACAAGGGATGCTTC 58.988 43.478 0.00 0.00 0.00 3.86
1730 4380 3.795688 TTTCTCACAAGGGATGCTTCT 57.204 42.857 0.00 0.00 0.00 2.85
1731 4381 3.795688 TTCTCACAAGGGATGCTTCTT 57.204 42.857 0.00 0.00 0.00 2.52
1732 4382 3.340814 TCTCACAAGGGATGCTTCTTC 57.659 47.619 0.00 0.00 0.00 2.87
1733 4383 2.909006 TCTCACAAGGGATGCTTCTTCT 59.091 45.455 0.00 0.00 0.00 2.85
1734 4384 4.096681 TCTCACAAGGGATGCTTCTTCTA 58.903 43.478 0.00 0.00 0.00 2.10
1735 4385 4.532126 TCTCACAAGGGATGCTTCTTCTAA 59.468 41.667 0.00 0.00 0.00 2.10
1736 4386 5.013079 TCTCACAAGGGATGCTTCTTCTAAA 59.987 40.000 0.00 0.00 0.00 1.85
1737 4387 5.819991 TCACAAGGGATGCTTCTTCTAAAT 58.180 37.500 0.00 0.00 0.00 1.40
1738 4388 5.882557 TCACAAGGGATGCTTCTTCTAAATC 59.117 40.000 0.00 0.00 0.00 2.17
1739 4389 5.649395 CACAAGGGATGCTTCTTCTAAATCA 59.351 40.000 0.00 0.00 0.00 2.57
1740 4390 6.151648 CACAAGGGATGCTTCTTCTAAATCAA 59.848 38.462 0.00 0.00 0.00 2.57
1741 4391 6.894103 ACAAGGGATGCTTCTTCTAAATCAAT 59.106 34.615 0.00 0.00 0.00 2.57
1742 4392 8.055181 ACAAGGGATGCTTCTTCTAAATCAATA 58.945 33.333 0.00 0.00 0.00 1.90
1743 4393 8.906867 CAAGGGATGCTTCTTCTAAATCAATAA 58.093 33.333 0.00 0.00 0.00 1.40
1744 4394 9.479549 AAGGGATGCTTCTTCTAAATCAATAAA 57.520 29.630 0.00 0.00 0.00 1.40
1745 4395 8.907885 AGGGATGCTTCTTCTAAATCAATAAAC 58.092 33.333 0.00 0.00 0.00 2.01
1746 4396 8.138074 GGGATGCTTCTTCTAAATCAATAAACC 58.862 37.037 0.00 0.00 0.00 3.27
1747 4397 8.686334 GGATGCTTCTTCTAAATCAATAAACCA 58.314 33.333 0.00 0.00 0.00 3.67
1750 4400 8.469200 TGCTTCTTCTAAATCAATAAACCATGG 58.531 33.333 11.19 11.19 0.00 3.66
1751 4401 7.922811 GCTTCTTCTAAATCAATAAACCATGGG 59.077 37.037 18.09 0.00 0.00 4.00
1752 4402 8.893563 TTCTTCTAAATCAATAAACCATGGGT 57.106 30.769 18.09 6.57 37.65 4.51
1753 4403 8.292444 TCTTCTAAATCAATAAACCATGGGTG 57.708 34.615 18.09 6.03 35.34 4.61
1754 4404 6.463995 TCTAAATCAATAAACCATGGGTGC 57.536 37.500 18.09 0.00 35.34 5.01
1755 4405 6.194235 TCTAAATCAATAAACCATGGGTGCT 58.806 36.000 18.09 0.00 35.34 4.40
1756 4406 7.350382 TCTAAATCAATAAACCATGGGTGCTA 58.650 34.615 18.09 0.00 35.34 3.49
1757 4407 6.469782 AAATCAATAAACCATGGGTGCTAG 57.530 37.500 18.09 1.14 35.34 3.42
1758 4408 4.584638 TCAATAAACCATGGGTGCTAGT 57.415 40.909 18.09 0.00 35.34 2.57
1759 4409 4.269183 TCAATAAACCATGGGTGCTAGTG 58.731 43.478 18.09 9.64 35.34 2.74
1760 4410 2.122783 TAAACCATGGGTGCTAGTGC 57.877 50.000 18.09 0.00 35.34 4.40
1761 4411 0.611896 AAACCATGGGTGCTAGTGCC 60.612 55.000 18.09 0.00 35.34 5.01
1762 4412 2.124151 CCATGGGTGCTAGTGCCC 60.124 66.667 2.85 14.48 45.04 5.36
1766 4416 2.998097 GGGTGCTAGTGCCCATGA 59.002 61.111 15.91 0.00 44.23 3.07
1767 4417 1.153086 GGGTGCTAGTGCCCATGAG 60.153 63.158 15.91 0.00 44.23 2.90
1768 4418 1.604378 GGTGCTAGTGCCCATGAGT 59.396 57.895 0.00 0.00 38.71 3.41
1769 4419 0.035056 GGTGCTAGTGCCCATGAGTT 60.035 55.000 0.00 0.00 38.71 3.01
1770 4420 1.614317 GGTGCTAGTGCCCATGAGTTT 60.614 52.381 0.00 0.00 38.71 2.66
1771 4421 1.740025 GTGCTAGTGCCCATGAGTTTC 59.260 52.381 0.00 0.00 38.71 2.78
1772 4422 1.350684 TGCTAGTGCCCATGAGTTTCA 59.649 47.619 0.00 0.00 38.71 2.69
1773 4423 2.025981 TGCTAGTGCCCATGAGTTTCAT 60.026 45.455 0.00 0.00 36.49 2.57
1774 4424 2.615912 GCTAGTGCCCATGAGTTTCATC 59.384 50.000 0.00 0.00 34.28 2.92
1775 4425 3.683847 GCTAGTGCCCATGAGTTTCATCT 60.684 47.826 0.00 0.00 34.28 2.90
1776 4426 3.446442 AGTGCCCATGAGTTTCATCTT 57.554 42.857 0.00 0.00 34.28 2.40
1777 4427 3.771216 AGTGCCCATGAGTTTCATCTTT 58.229 40.909 0.00 0.00 34.28 2.52
1778 4428 4.154942 AGTGCCCATGAGTTTCATCTTTT 58.845 39.130 0.00 0.00 34.28 2.27
1779 4429 5.324409 AGTGCCCATGAGTTTCATCTTTTA 58.676 37.500 0.00 0.00 34.28 1.52
1780 4430 5.954150 AGTGCCCATGAGTTTCATCTTTTAT 59.046 36.000 0.00 0.00 34.28 1.40
1781 4431 6.096001 AGTGCCCATGAGTTTCATCTTTTATC 59.904 38.462 0.00 0.00 34.28 1.75
1782 4432 5.951148 TGCCCATGAGTTTCATCTTTTATCA 59.049 36.000 0.00 0.00 34.28 2.15
1783 4433 6.608405 TGCCCATGAGTTTCATCTTTTATCAT 59.392 34.615 0.00 0.00 34.28 2.45
1784 4434 7.779326 TGCCCATGAGTTTCATCTTTTATCATA 59.221 33.333 0.00 0.00 34.28 2.15
1785 4435 8.078596 GCCCATGAGTTTCATCTTTTATCATAC 58.921 37.037 0.00 0.00 34.28 2.39
1786 4436 9.123902 CCCATGAGTTTCATCTTTTATCATACA 57.876 33.333 0.00 0.00 34.28 2.29
1798 4448 8.732746 TCTTTTATCATACAGTTTAGGGAAGC 57.267 34.615 0.00 0.00 0.00 3.86
1799 4449 8.548877 TCTTTTATCATACAGTTTAGGGAAGCT 58.451 33.333 0.00 0.00 0.00 3.74
1802 4452 5.277857 TCATACAGTTTAGGGAAGCTAGC 57.722 43.478 6.62 6.62 0.00 3.42
1822 4472 7.935210 AGCTAGCTAGTGTTTTGGTTTTAACTA 59.065 33.333 17.69 0.00 0.00 2.24
2106 5999 3.775261 AAACAAGGCTTGGAAATGCAT 57.225 38.095 29.26 4.56 34.12 3.96
2271 6164 5.408356 AGTGACCGTACATCTAATTCACAC 58.592 41.667 0.00 0.00 35.41 3.82
2295 6188 2.799917 CGACCCGTGATCATTCTCCTTC 60.800 54.545 0.00 0.00 0.00 3.46
2328 6221 2.950673 TGGCACAAATCGCGGAAC 59.049 55.556 6.13 0.00 31.92 3.62
2405 6327 1.073763 TGTTGCCACTGTTAGGATGCT 59.926 47.619 0.00 0.00 0.00 3.79
2412 6337 1.073763 ACTGTTAGGATGCTTGTGCCA 59.926 47.619 0.00 0.00 38.71 4.92
2413 6338 1.470098 CTGTTAGGATGCTTGTGCCAC 59.530 52.381 0.00 0.00 38.71 5.01
2414 6339 1.202867 TGTTAGGATGCTTGTGCCACA 60.203 47.619 0.00 0.00 38.71 4.17
2415 6340 1.200020 GTTAGGATGCTTGTGCCACAC 59.800 52.381 0.00 0.00 38.71 3.82
2416 6341 0.692476 TAGGATGCTTGTGCCACACT 59.308 50.000 0.00 0.00 38.71 3.55
2417 6342 0.178981 AGGATGCTTGTGCCACACTT 60.179 50.000 0.00 0.00 38.71 3.16
2418 6343 0.242017 GGATGCTTGTGCCACACTTC 59.758 55.000 0.00 0.00 38.71 3.01
2419 6344 0.953727 GATGCTTGTGCCACACTTCA 59.046 50.000 0.00 0.00 38.71 3.02
2420 6345 0.956633 ATGCTTGTGCCACACTTCAG 59.043 50.000 0.00 0.00 38.71 3.02
2421 6346 0.394216 TGCTTGTGCCACACTTCAGT 60.394 50.000 0.00 0.00 38.71 3.41
2422 6347 0.740737 GCTTGTGCCACACTTCAGTT 59.259 50.000 0.00 0.00 35.11 3.16
2423 6348 1.268743 GCTTGTGCCACACTTCAGTTC 60.269 52.381 0.00 0.00 35.11 3.01
2424 6349 1.334869 CTTGTGCCACACTTCAGTTCC 59.665 52.381 0.00 0.00 35.11 3.62
2425 6350 0.465460 TGTGCCACACTTCAGTTCCC 60.465 55.000 0.00 0.00 35.11 3.97
2426 6351 0.465460 GTGCCACACTTCAGTTCCCA 60.465 55.000 0.00 0.00 0.00 4.37
2427 6352 0.478072 TGCCACACTTCAGTTCCCAT 59.522 50.000 0.00 0.00 0.00 4.00
2428 6353 1.133513 TGCCACACTTCAGTTCCCATT 60.134 47.619 0.00 0.00 0.00 3.16
2429 6354 2.107378 TGCCACACTTCAGTTCCCATTA 59.893 45.455 0.00 0.00 0.00 1.90
2430 6355 3.245229 TGCCACACTTCAGTTCCCATTAT 60.245 43.478 0.00 0.00 0.00 1.28
2431 6356 4.018870 TGCCACACTTCAGTTCCCATTATA 60.019 41.667 0.00 0.00 0.00 0.98
2432 6357 4.335594 GCCACACTTCAGTTCCCATTATAC 59.664 45.833 0.00 0.00 0.00 1.47
2433 6358 4.881850 CCACACTTCAGTTCCCATTATACC 59.118 45.833 0.00 0.00 0.00 2.73
2434 6359 5.339200 CCACACTTCAGTTCCCATTATACCT 60.339 44.000 0.00 0.00 0.00 3.08
2435 6360 5.586243 CACACTTCAGTTCCCATTATACCTG 59.414 44.000 0.00 0.00 0.00 4.00
2436 6361 5.250774 ACACTTCAGTTCCCATTATACCTGT 59.749 40.000 0.00 0.00 0.00 4.00
2437 6362 5.817816 CACTTCAGTTCCCATTATACCTGTC 59.182 44.000 0.00 0.00 0.00 3.51
2438 6363 5.726793 ACTTCAGTTCCCATTATACCTGTCT 59.273 40.000 0.00 0.00 0.00 3.41
2439 6364 5.871396 TCAGTTCCCATTATACCTGTCTC 57.129 43.478 0.00 0.00 0.00 3.36
2440 6365 5.277250 TCAGTTCCCATTATACCTGTCTCA 58.723 41.667 0.00 0.00 0.00 3.27
2441 6366 5.905331 TCAGTTCCCATTATACCTGTCTCAT 59.095 40.000 0.00 0.00 0.00 2.90
2442 6367 6.042093 TCAGTTCCCATTATACCTGTCTCATC 59.958 42.308 0.00 0.00 0.00 2.92
2443 6368 6.042552 CAGTTCCCATTATACCTGTCTCATCT 59.957 42.308 0.00 0.00 0.00 2.90
2444 6369 7.233553 CAGTTCCCATTATACCTGTCTCATCTA 59.766 40.741 0.00 0.00 0.00 1.98
2445 6370 7.958583 AGTTCCCATTATACCTGTCTCATCTAT 59.041 37.037 0.00 0.00 0.00 1.98
2446 6371 7.724490 TCCCATTATACCTGTCTCATCTATG 57.276 40.000 0.00 0.00 0.00 2.23
2447 6372 7.248976 TCCCATTATACCTGTCTCATCTATGT 58.751 38.462 0.00 0.00 0.00 2.29
2448 6373 7.179160 TCCCATTATACCTGTCTCATCTATGTG 59.821 40.741 0.00 0.00 0.00 3.21
2449 6374 7.179160 CCCATTATACCTGTCTCATCTATGTGA 59.821 40.741 0.00 0.00 0.00 3.58
2450 6375 8.588472 CCATTATACCTGTCTCATCTATGTGAA 58.412 37.037 0.00 0.00 32.81 3.18
2451 6376 9.987272 CATTATACCTGTCTCATCTATGTGAAA 57.013 33.333 0.00 0.00 32.81 2.69
2486 6549 2.163815 ACGAGTACTCTTCGGAACATGG 59.836 50.000 20.34 3.20 0.00 3.66
2756 6860 4.697514 TGCATAAGTGTCCTCTGATAAGC 58.302 43.478 0.00 0.00 0.00 3.09
2764 6868 8.540507 AAGTGTCCTCTGATAAGCTAAATAGA 57.459 34.615 0.00 0.00 0.00 1.98
2995 7129 0.108662 TGCGAGACACGAGCAATCAT 60.109 50.000 0.00 0.00 45.77 2.45
3173 7317 3.414269 TGCTGCAATGATCTTGAACTCA 58.586 40.909 0.00 0.00 0.00 3.41
3399 7607 6.018751 GCCAAAGAAAAAGGTTGATTTGACTC 60.019 38.462 0.00 0.00 30.15 3.36
3478 7689 4.551388 ACGTTGATCTTGAACTCTCAGAC 58.449 43.478 0.00 0.00 31.69 3.51
3512 7723 1.604604 CCTTTCTCCAAACGAGGCAA 58.395 50.000 0.00 0.00 39.30 4.52
3566 7777 8.479689 TCATTAGACGATTATCTTGGTGGTTTA 58.520 33.333 0.00 0.00 0.00 2.01
3630 7841 2.218603 GTCCGTTTGACCATTCTGTGT 58.781 47.619 0.00 0.00 38.09 3.72
3651 7862 0.520404 GTGTTGCTGACTGCTGATGG 59.480 55.000 5.87 0.00 43.37 3.51
3652 7863 0.607217 TGTTGCTGACTGCTGATGGG 60.607 55.000 5.87 0.00 43.37 4.00
3653 7864 0.607489 GTTGCTGACTGCTGATGGGT 60.607 55.000 5.87 0.00 43.37 4.51
3654 7865 0.321919 TTGCTGACTGCTGATGGGTC 60.322 55.000 5.87 0.00 43.37 4.46
3655 7866 1.451028 GCTGACTGCTGATGGGTCC 60.451 63.158 0.00 0.00 38.95 4.46
3656 7867 1.153489 CTGACTGCTGATGGGTCCG 60.153 63.158 0.00 0.00 0.00 4.79
3657 7868 1.892819 CTGACTGCTGATGGGTCCGT 61.893 60.000 0.00 0.00 0.00 4.69
3658 7869 1.296715 GACTGCTGATGGGTCCGTT 59.703 57.895 0.00 0.00 0.00 4.44
3659 7870 0.321653 GACTGCTGATGGGTCCGTTT 60.322 55.000 0.00 0.00 0.00 3.60
3660 7871 0.606401 ACTGCTGATGGGTCCGTTTG 60.606 55.000 0.00 0.00 0.00 2.93
3661 7872 0.606401 CTGCTGATGGGTCCGTTTGT 60.606 55.000 0.00 0.00 0.00 2.83
3662 7873 0.605319 TGCTGATGGGTCCGTTTGTC 60.605 55.000 0.00 0.00 0.00 3.18
3663 7874 1.305930 GCTGATGGGTCCGTTTGTCC 61.306 60.000 0.00 0.00 0.00 4.02
3676 8105 0.871722 TTTGTCCGTGAATTGCCTCG 59.128 50.000 0.00 0.00 0.00 4.63
3811 8240 5.235831 GGAGATATTTACGTTAACACTGCCC 59.764 44.000 6.39 0.00 0.00 5.36
3827 8256 1.682849 CCCCACAATCTCAACCGGA 59.317 57.895 9.46 0.00 0.00 5.14
3828 8257 0.676782 CCCCACAATCTCAACCGGAC 60.677 60.000 9.46 0.00 0.00 4.79
3829 8258 0.036164 CCCACAATCTCAACCGGACA 59.964 55.000 9.46 0.00 0.00 4.02
3830 8259 1.156736 CCACAATCTCAACCGGACAC 58.843 55.000 9.46 0.00 0.00 3.67
3831 8260 1.542328 CCACAATCTCAACCGGACACA 60.542 52.381 9.46 0.00 0.00 3.72
3832 8261 2.217750 CACAATCTCAACCGGACACAA 58.782 47.619 9.46 0.00 0.00 3.33
3833 8262 2.224079 CACAATCTCAACCGGACACAAG 59.776 50.000 9.46 0.00 0.00 3.16
3834 8263 1.806542 CAATCTCAACCGGACACAAGG 59.193 52.381 9.46 0.00 0.00 3.61
3835 8264 1.056660 ATCTCAACCGGACACAAGGT 58.943 50.000 9.46 0.00 43.68 3.50
3840 8269 2.523440 ACCGGACACAAGGTTGAGA 58.477 52.632 9.46 0.00 37.49 3.27
3841 8270 1.056660 ACCGGACACAAGGTTGAGAT 58.943 50.000 9.46 0.00 37.49 2.75
3844 8273 2.494059 CGGACACAAGGTTGAGATTGT 58.506 47.619 0.00 0.00 40.18 2.71
3869 8298 7.280876 GTGTCATAATTTCTCCAGCATGACTTA 59.719 37.037 12.52 0.00 41.66 2.24
3870 8299 7.280876 TGTCATAATTTCTCCAGCATGACTTAC 59.719 37.037 12.52 0.00 41.66 2.34
3916 8352 4.040339 TGCCACTTGATCACTAGAAGACAA 59.960 41.667 0.00 1.76 0.00 3.18
3945 8646 1.754803 CATCCAATGCTCTTGTGCCAT 59.245 47.619 0.00 0.00 0.00 4.40
3949 8650 2.159282 CCAATGCTCTTGTGCCATCTTC 60.159 50.000 0.00 0.00 0.00 2.87
3955 8656 3.131933 GCTCTTGTGCCATCTTCTCTCTA 59.868 47.826 0.00 0.00 0.00 2.43
3988 8689 3.055094 AGTCCACCTCAATATGCTTCGTT 60.055 43.478 0.00 0.00 0.00 3.85
3992 8693 5.105106 TCCACCTCAATATGCTTCGTTCTTA 60.105 40.000 0.00 0.00 0.00 2.10
4000 8701 8.726068 TCAATATGCTTCGTTCTTACATGAAAA 58.274 29.630 0.00 0.00 0.00 2.29
4002 8703 9.559958 AATATGCTTCGTTCTTACATGAAAAAG 57.440 29.630 0.00 0.10 0.00 2.27
4005 8706 6.037720 TGCTTCGTTCTTACATGAAAAAGTGA 59.962 34.615 0.00 0.00 0.00 3.41
4010 8711 8.455682 TCGTTCTTACATGAAAAAGTGAGTTTT 58.544 29.630 0.00 0.00 40.26 2.43
4030 8731 3.060736 TCACTTAATTAGGTTGCGCCA 57.939 42.857 4.18 0.00 40.61 5.69
4054 8755 4.911514 ATTATCACACCATAAAACCGGC 57.088 40.909 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.819105 TCAGAAAGTTCCCGTGTATCAT 57.181 40.909 0.00 0.00 0.00 2.45
44 45 4.141914 GGAGATATCAGAAAGTTCCCGTGT 60.142 45.833 5.32 0.00 0.00 4.49
45 46 4.141937 TGGAGATATCAGAAAGTTCCCGTG 60.142 45.833 5.32 0.00 0.00 4.94
46 47 4.030913 TGGAGATATCAGAAAGTTCCCGT 58.969 43.478 5.32 0.00 0.00 5.28
47 48 4.672587 TGGAGATATCAGAAAGTTCCCG 57.327 45.455 5.32 0.00 0.00 5.14
48 49 5.309282 AGGATGGAGATATCAGAAAGTTCCC 59.691 44.000 5.32 0.00 0.00 3.97
49 50 6.183361 ACAGGATGGAGATATCAGAAAGTTCC 60.183 42.308 5.32 1.83 43.62 3.62
50 51 6.825610 ACAGGATGGAGATATCAGAAAGTTC 58.174 40.000 5.32 0.00 43.62 3.01
51 52 6.821616 ACAGGATGGAGATATCAGAAAGTT 57.178 37.500 5.32 0.00 43.62 2.66
52 53 7.921041 TTACAGGATGGAGATATCAGAAAGT 57.079 36.000 5.32 0.00 43.62 2.66
53 54 8.646004 TCTTTACAGGATGGAGATATCAGAAAG 58.354 37.037 5.32 0.00 43.62 2.62
54 55 8.553085 TCTTTACAGGATGGAGATATCAGAAA 57.447 34.615 5.32 0.00 43.62 2.52
55 56 8.733092 ATCTTTACAGGATGGAGATATCAGAA 57.267 34.615 5.32 0.00 43.62 3.02
56 57 8.733092 AATCTTTACAGGATGGAGATATCAGA 57.267 34.615 5.32 0.00 43.62 3.27
57 58 9.790344 AAAATCTTTACAGGATGGAGATATCAG 57.210 33.333 5.32 0.00 43.62 2.90
203 208 1.216977 CGGTCCATGTGAACCGCTA 59.783 57.895 15.73 0.00 38.95 4.26
283 288 1.825474 CATCACGTAGACCCCTCTTGT 59.175 52.381 0.00 0.00 0.00 3.16
324 334 5.745294 GTCTTTGCGTAGATATTACCGAACA 59.255 40.000 0.00 0.00 0.00 3.18
325 335 5.174579 GGTCTTTGCGTAGATATTACCGAAC 59.825 44.000 0.00 0.00 0.00 3.95
363 373 3.202818 TGCCATCCTCAGGACAACATAAT 59.797 43.478 0.00 0.00 32.98 1.28
399 438 3.006859 GGTGGCAATTTCCTTTAGCAAGT 59.993 43.478 0.00 0.00 0.00 3.16
422 461 2.953020 GGCAAATTATGTTGTCGCCAA 58.047 42.857 0.00 0.00 37.98 4.52
493 532 9.959749 TCAACATAACTTTTTGGATTTCACTAC 57.040 29.630 0.00 0.00 0.00 2.73
621 661 3.409026 TGTCCTTCCAAAGCTTCTCTC 57.591 47.619 0.00 0.00 0.00 3.20
669 709 2.166459 TGACAGTTCTTCCATCCTAGCG 59.834 50.000 0.00 0.00 0.00 4.26
671 711 4.709397 AGTCTGACAGTTCTTCCATCCTAG 59.291 45.833 10.88 0.00 0.00 3.02
692 732 7.884877 TCATGAAGAACTCAAAACATCCATAGT 59.115 33.333 0.00 0.00 37.67 2.12
693 733 8.272545 TCATGAAGAACTCAAAACATCCATAG 57.727 34.615 0.00 0.00 37.67 2.23
694 734 8.812513 ATCATGAAGAACTCAAAACATCCATA 57.187 30.769 0.00 0.00 37.67 2.74
695 735 7.395206 TGATCATGAAGAACTCAAAACATCCAT 59.605 33.333 0.00 0.00 37.67 3.41
747 787 3.696548 TGAGAGATTGTGCGATCTGTACT 59.303 43.478 6.66 0.00 36.54 2.73
813 854 3.454812 ACCAACCAAACAGACTAGTGACT 59.545 43.478 0.00 0.00 0.00 3.41
869 913 1.133823 TGTCAGGAAGCCTCTGCAAAA 60.134 47.619 0.00 0.00 41.13 2.44
923 967 1.115467 CTCCCGTAGCCTCACTTCAT 58.885 55.000 0.00 0.00 0.00 2.57
969 1013 2.121786 GCGTCGAACACTACTTCAACA 58.878 47.619 0.00 0.00 0.00 3.33
972 1016 0.386352 CGGCGTCGAACACTACTTCA 60.386 55.000 1.44 0.00 39.00 3.02
1034 1078 1.153025 AGCCGCAGATCATGTGCAT 60.153 52.632 7.66 0.00 41.26 3.96
1035 1079 1.816679 GAGCCGCAGATCATGTGCA 60.817 57.895 7.66 0.00 41.26 4.57
1038 1082 2.107750 CCGAGCCGCAGATCATGT 59.892 61.111 0.00 0.00 0.00 3.21
1143 1187 0.522626 CAACAACATCGCCATGCTGA 59.477 50.000 1.52 0.00 31.49 4.26
1160 1204 4.135306 TGATTTAAACAGGCACGTACCAA 58.865 39.130 7.75 0.00 0.00 3.67
1162 1206 4.634443 AGATGATTTAAACAGGCACGTACC 59.366 41.667 0.00 0.00 0.00 3.34
1270 2500 4.005650 TCTGAAGATCATTCAACTGCACC 58.994 43.478 0.00 0.00 0.00 5.01
1347 2577 8.533965 CATTGACTAATTCATGTATTTTTGCCG 58.466 33.333 2.68 0.00 32.84 5.69
1452 2778 2.083774 GAGAATGCGGATGGTGAAACA 58.916 47.619 0.00 0.00 39.98 2.83
1485 4131 9.626045 GGAATTACAAAGTGGACAGAAATTAAG 57.374 33.333 0.00 0.00 0.00 1.85
1495 4141 5.184479 GGGGTTAAGGAATTACAAAGTGGAC 59.816 44.000 0.00 0.00 0.00 4.02
1527 4173 2.454055 GCTGACAGCACAACTTTTCAC 58.546 47.619 22.62 0.00 41.89 3.18
1581 4228 8.684973 AGAAAATGTACGTATCTACAGACAAC 57.315 34.615 0.00 0.00 30.12 3.32
1639 4289 2.187946 CGCTCCCTTGCCACTAGG 59.812 66.667 0.00 0.00 38.23 3.02
1640 4290 2.512515 GCGCTCCCTTGCCACTAG 60.513 66.667 0.00 0.00 0.00 2.57
1641 4291 3.315142 CTGCGCTCCCTTGCCACTA 62.315 63.158 9.73 0.00 0.00 2.74
1642 4292 4.711949 CTGCGCTCCCTTGCCACT 62.712 66.667 9.73 0.00 0.00 4.00
1656 4306 4.687215 TGCTGGAGACGCCACTGC 62.687 66.667 0.00 0.00 43.33 4.40
1657 4307 2.031012 TTGCTGGAGACGCCACTG 59.969 61.111 0.00 0.00 43.33 3.66
1658 4308 2.031163 GTTGCTGGAGACGCCACT 59.969 61.111 0.00 0.00 43.33 4.00
1659 4309 3.050275 GGTTGCTGGAGACGCCAC 61.050 66.667 0.00 0.00 43.33 5.01
1660 4310 3.535629 CTGGTTGCTGGAGACGCCA 62.536 63.158 0.00 0.00 46.96 5.69
1661 4311 2.743928 CTGGTTGCTGGAGACGCC 60.744 66.667 0.00 0.00 37.10 5.68
1662 4312 2.743928 CCTGGTTGCTGGAGACGC 60.744 66.667 0.00 0.00 0.00 5.19
1663 4313 2.046892 CCCTGGTTGCTGGAGACG 60.047 66.667 0.00 0.00 0.00 4.18
1664 4314 0.606673 GAACCCTGGTTGCTGGAGAC 60.607 60.000 6.24 0.00 38.60 3.36
1665 4315 1.761174 GAACCCTGGTTGCTGGAGA 59.239 57.895 6.24 0.00 38.60 3.71
1666 4316 1.672356 CGAACCCTGGTTGCTGGAG 60.672 63.158 6.24 0.00 38.60 3.86
1667 4317 2.111999 CTCGAACCCTGGTTGCTGGA 62.112 60.000 6.24 0.00 38.60 3.86
1668 4318 1.672356 CTCGAACCCTGGTTGCTGG 60.672 63.158 6.24 0.00 38.60 4.85
1669 4319 2.328099 GCTCGAACCCTGGTTGCTG 61.328 63.158 6.24 0.00 38.60 4.41
1670 4320 2.032681 GCTCGAACCCTGGTTGCT 59.967 61.111 6.24 0.00 38.60 3.91
1671 4321 3.056328 GGCTCGAACCCTGGTTGC 61.056 66.667 6.24 3.86 38.60 4.17
1672 4322 1.966451 GTGGCTCGAACCCTGGTTG 60.966 63.158 6.24 0.00 38.60 3.77
1673 4323 2.430367 GTGGCTCGAACCCTGGTT 59.570 61.111 1.61 0.07 41.54 3.67
1674 4324 4.003788 CGTGGCTCGAACCCTGGT 62.004 66.667 2.21 0.00 42.86 4.00
1675 4325 3.934391 GACGTGGCTCGAACCCTGG 62.934 68.421 16.57 0.00 42.86 4.45
1676 4326 2.432628 GACGTGGCTCGAACCCTG 60.433 66.667 16.57 0.00 42.86 4.45
1677 4327 4.052229 CGACGTGGCTCGAACCCT 62.052 66.667 16.57 0.00 42.86 4.34
1691 4341 2.311124 ATGAGAAATTCGTCCCCGAC 57.689 50.000 0.00 0.00 44.13 4.79
1692 4342 3.055385 AGAAATGAGAAATTCGTCCCCGA 60.055 43.478 0.00 0.00 42.41 5.14
1693 4343 3.270877 AGAAATGAGAAATTCGTCCCCG 58.729 45.455 0.00 0.00 0.00 5.73
1694 4344 4.095036 GTGAGAAATGAGAAATTCGTCCCC 59.905 45.833 0.00 0.00 0.00 4.81
1695 4345 4.695455 TGTGAGAAATGAGAAATTCGTCCC 59.305 41.667 0.00 0.00 0.00 4.46
1696 4346 5.862924 TGTGAGAAATGAGAAATTCGTCC 57.137 39.130 0.00 0.00 0.00 4.79
1697 4347 6.310197 CCTTGTGAGAAATGAGAAATTCGTC 58.690 40.000 0.00 0.00 0.00 4.20
1698 4348 5.182001 CCCTTGTGAGAAATGAGAAATTCGT 59.818 40.000 0.00 0.00 0.00 3.85
1699 4349 5.412594 TCCCTTGTGAGAAATGAGAAATTCG 59.587 40.000 0.00 0.00 0.00 3.34
1700 4350 6.824305 TCCCTTGTGAGAAATGAGAAATTC 57.176 37.500 0.00 0.00 0.00 2.17
1701 4351 6.350780 GCATCCCTTGTGAGAAATGAGAAATT 60.351 38.462 0.00 0.00 0.00 1.82
1702 4352 5.126707 GCATCCCTTGTGAGAAATGAGAAAT 59.873 40.000 0.00 0.00 0.00 2.17
1703 4353 4.460382 GCATCCCTTGTGAGAAATGAGAAA 59.540 41.667 0.00 0.00 0.00 2.52
1704 4354 4.012374 GCATCCCTTGTGAGAAATGAGAA 58.988 43.478 0.00 0.00 0.00 2.87
1705 4355 3.265221 AGCATCCCTTGTGAGAAATGAGA 59.735 43.478 0.00 0.00 0.00 3.27
1706 4356 3.618351 AGCATCCCTTGTGAGAAATGAG 58.382 45.455 0.00 0.00 0.00 2.90
1707 4357 3.726557 AGCATCCCTTGTGAGAAATGA 57.273 42.857 0.00 0.00 0.00 2.57
1708 4358 4.015084 AGAAGCATCCCTTGTGAGAAATG 58.985 43.478 0.00 0.00 32.78 2.32
1709 4359 4.313020 AGAAGCATCCCTTGTGAGAAAT 57.687 40.909 0.00 0.00 32.78 2.17
1710 4360 3.795688 AGAAGCATCCCTTGTGAGAAA 57.204 42.857 0.00 0.00 32.78 2.52
1711 4361 3.328931 AGAAGAAGCATCCCTTGTGAGAA 59.671 43.478 0.00 0.00 32.78 2.87
1712 4362 2.909006 AGAAGAAGCATCCCTTGTGAGA 59.091 45.455 0.00 0.00 32.78 3.27
1713 4363 3.347077 AGAAGAAGCATCCCTTGTGAG 57.653 47.619 0.00 0.00 32.78 3.51
1714 4364 4.908601 TTAGAAGAAGCATCCCTTGTGA 57.091 40.909 0.00 0.00 32.78 3.58
1715 4365 5.649395 TGATTTAGAAGAAGCATCCCTTGTG 59.351 40.000 0.00 0.00 32.78 3.33
1716 4366 5.819991 TGATTTAGAAGAAGCATCCCTTGT 58.180 37.500 0.00 0.00 32.78 3.16
1717 4367 6.764308 TTGATTTAGAAGAAGCATCCCTTG 57.236 37.500 0.00 0.00 32.78 3.61
1718 4368 9.479549 TTTATTGATTTAGAAGAAGCATCCCTT 57.520 29.630 0.00 0.00 36.19 3.95
1719 4369 8.907885 GTTTATTGATTTAGAAGAAGCATCCCT 58.092 33.333 0.00 0.00 0.00 4.20
1720 4370 8.138074 GGTTTATTGATTTAGAAGAAGCATCCC 58.862 37.037 0.00 0.00 0.00 3.85
1721 4371 8.686334 TGGTTTATTGATTTAGAAGAAGCATCC 58.314 33.333 0.00 0.00 0.00 3.51
1724 4374 8.469200 CCATGGTTTATTGATTTAGAAGAAGCA 58.531 33.333 2.57 0.00 0.00 3.91
1725 4375 7.922811 CCCATGGTTTATTGATTTAGAAGAAGC 59.077 37.037 11.73 0.00 0.00 3.86
1726 4376 8.971073 ACCCATGGTTTATTGATTTAGAAGAAG 58.029 33.333 11.73 0.00 27.29 2.85
1727 4377 8.748412 CACCCATGGTTTATTGATTTAGAAGAA 58.252 33.333 11.73 0.00 31.02 2.52
1728 4378 7.147915 GCACCCATGGTTTATTGATTTAGAAGA 60.148 37.037 11.73 0.00 31.02 2.87
1729 4379 6.980397 GCACCCATGGTTTATTGATTTAGAAG 59.020 38.462 11.73 0.00 31.02 2.85
1730 4380 6.667414 AGCACCCATGGTTTATTGATTTAGAA 59.333 34.615 11.73 0.00 31.02 2.10
1731 4381 6.194235 AGCACCCATGGTTTATTGATTTAGA 58.806 36.000 11.73 0.00 31.02 2.10
1732 4382 6.469782 AGCACCCATGGTTTATTGATTTAG 57.530 37.500 11.73 0.00 31.02 1.85
1733 4383 7.068103 CACTAGCACCCATGGTTTATTGATTTA 59.932 37.037 11.73 0.00 37.77 1.40
1734 4384 5.957774 ACTAGCACCCATGGTTTATTGATTT 59.042 36.000 11.73 0.00 37.77 2.17
1735 4385 5.360714 CACTAGCACCCATGGTTTATTGATT 59.639 40.000 11.73 0.00 37.77 2.57
1736 4386 4.889409 CACTAGCACCCATGGTTTATTGAT 59.111 41.667 11.73 0.98 37.77 2.57
1737 4387 4.269183 CACTAGCACCCATGGTTTATTGA 58.731 43.478 11.73 0.00 37.77 2.57
1738 4388 3.181487 GCACTAGCACCCATGGTTTATTG 60.181 47.826 11.73 0.74 41.58 1.90
1739 4389 3.023832 GCACTAGCACCCATGGTTTATT 58.976 45.455 11.73 0.00 41.58 1.40
1740 4390 2.654863 GCACTAGCACCCATGGTTTAT 58.345 47.619 11.73 0.00 41.58 1.40
1741 4391 1.340600 GGCACTAGCACCCATGGTTTA 60.341 52.381 11.73 0.00 44.61 2.01
1742 4392 0.611896 GGCACTAGCACCCATGGTTT 60.612 55.000 11.73 0.00 44.61 3.27
1743 4393 1.000896 GGCACTAGCACCCATGGTT 60.001 57.895 11.73 0.00 44.61 3.67
1744 4394 2.677228 GGCACTAGCACCCATGGT 59.323 61.111 11.73 0.00 44.61 3.55
1745 4395 2.124151 GGGCACTAGCACCCATGG 60.124 66.667 14.48 4.14 46.22 3.66
1749 4399 1.153086 CTCATGGGCACTAGCACCC 60.153 63.158 12.83 12.83 46.13 4.61
1750 4400 0.035056 AACTCATGGGCACTAGCACC 60.035 55.000 0.00 0.00 46.13 5.01
1752 4402 1.350684 TGAAACTCATGGGCACTAGCA 59.649 47.619 0.00 0.00 44.61 3.49
1753 4403 2.113860 TGAAACTCATGGGCACTAGC 57.886 50.000 0.00 0.00 41.10 3.42
1754 4404 4.148128 AGATGAAACTCATGGGCACTAG 57.852 45.455 0.00 0.00 37.20 2.57
1755 4405 4.574674 AAGATGAAACTCATGGGCACTA 57.425 40.909 0.00 0.00 37.20 2.74
1756 4406 3.446442 AAGATGAAACTCATGGGCACT 57.554 42.857 0.00 0.00 37.20 4.40
1757 4407 4.525912 AAAAGATGAAACTCATGGGCAC 57.474 40.909 0.00 0.00 37.20 5.01
1758 4408 5.951148 TGATAAAAGATGAAACTCATGGGCA 59.049 36.000 0.00 0.00 37.20 5.36
1759 4409 6.455360 TGATAAAAGATGAAACTCATGGGC 57.545 37.500 0.00 0.00 37.20 5.36
1760 4410 9.123902 TGTATGATAAAAGATGAAACTCATGGG 57.876 33.333 0.00 0.00 37.20 4.00
1772 4422 9.343539 GCTTCCCTAAACTGTATGATAAAAGAT 57.656 33.333 0.00 0.00 0.00 2.40
1773 4423 8.548877 AGCTTCCCTAAACTGTATGATAAAAGA 58.451 33.333 0.00 0.00 0.00 2.52
1774 4424 8.738645 AGCTTCCCTAAACTGTATGATAAAAG 57.261 34.615 0.00 0.00 0.00 2.27
1775 4425 9.832445 CTAGCTTCCCTAAACTGTATGATAAAA 57.168 33.333 0.00 0.00 0.00 1.52
1776 4426 7.931948 GCTAGCTTCCCTAAACTGTATGATAAA 59.068 37.037 7.70 0.00 0.00 1.40
1777 4427 7.290248 AGCTAGCTTCCCTAAACTGTATGATAA 59.710 37.037 12.68 0.00 0.00 1.75
1778 4428 6.782988 AGCTAGCTTCCCTAAACTGTATGATA 59.217 38.462 12.68 0.00 0.00 2.15
1779 4429 5.604650 AGCTAGCTTCCCTAAACTGTATGAT 59.395 40.000 12.68 0.00 0.00 2.45
1780 4430 4.962995 AGCTAGCTTCCCTAAACTGTATGA 59.037 41.667 12.68 0.00 0.00 2.15
1781 4431 5.283457 AGCTAGCTTCCCTAAACTGTATG 57.717 43.478 12.68 0.00 0.00 2.39
1782 4432 6.041069 CACTAGCTAGCTTCCCTAAACTGTAT 59.959 42.308 24.88 0.00 0.00 2.29
1783 4433 5.360144 CACTAGCTAGCTTCCCTAAACTGTA 59.640 44.000 24.88 0.00 0.00 2.74
1784 4434 4.160626 CACTAGCTAGCTTCCCTAAACTGT 59.839 45.833 24.88 4.06 0.00 3.55
1785 4435 4.160626 ACACTAGCTAGCTTCCCTAAACTG 59.839 45.833 24.88 9.07 0.00 3.16
1786 4436 4.354662 ACACTAGCTAGCTTCCCTAAACT 58.645 43.478 24.88 0.00 0.00 2.66
1787 4437 4.739587 ACACTAGCTAGCTTCCCTAAAC 57.260 45.455 24.88 0.00 0.00 2.01
1788 4438 5.757099 AAACACTAGCTAGCTTCCCTAAA 57.243 39.130 24.88 1.10 0.00 1.85
1789 4439 5.488341 CAAAACACTAGCTAGCTTCCCTAA 58.512 41.667 24.88 1.94 0.00 2.69
1790 4440 4.081087 CCAAAACACTAGCTAGCTTCCCTA 60.081 45.833 24.88 2.79 0.00 3.53
1791 4441 3.307762 CCAAAACACTAGCTAGCTTCCCT 60.308 47.826 24.88 0.00 0.00 4.20
1792 4442 3.010420 CCAAAACACTAGCTAGCTTCCC 58.990 50.000 24.88 0.00 0.00 3.97
1793 4443 3.676093 ACCAAAACACTAGCTAGCTTCC 58.324 45.455 24.88 0.00 0.00 3.46
1794 4444 5.690997 AAACCAAAACACTAGCTAGCTTC 57.309 39.130 24.88 0.00 0.00 3.86
1822 4472 6.183360 TGCAAACGTATCCTTCAGAAGTTTTT 60.183 34.615 9.41 0.00 32.15 1.94
1865 4515 8.504005 CCTTCAACTGATAACGTTGATTTAGTT 58.496 33.333 11.99 10.81 46.95 2.24
2106 5999 2.356022 CCGGATGGCCTGATATGCAATA 60.356 50.000 3.32 0.00 0.00 1.90
2271 6164 0.179100 AGAATGATCACGGGTCGCAG 60.179 55.000 0.00 0.00 0.00 5.18
2295 6188 2.229784 GTGCCAATGAAGGTTCTTCCAG 59.770 50.000 5.36 0.00 39.02 3.86
2306 6199 0.109365 CCGCGATTTGTGCCAATGAA 60.109 50.000 8.23 0.00 0.00 2.57
2307 6200 0.957888 TCCGCGATTTGTGCCAATGA 60.958 50.000 8.23 0.00 0.00 2.57
2405 6327 1.388547 GGAACTGAAGTGTGGCACAA 58.611 50.000 23.90 5.64 44.16 3.33
2412 6337 5.250774 ACAGGTATAATGGGAACTGAAGTGT 59.749 40.000 0.00 0.00 0.00 3.55
2413 6338 5.745227 ACAGGTATAATGGGAACTGAAGTG 58.255 41.667 0.00 0.00 0.00 3.16
2414 6339 5.726793 AGACAGGTATAATGGGAACTGAAGT 59.273 40.000 0.00 0.00 0.00 3.01
2415 6340 6.127054 TGAGACAGGTATAATGGGAACTGAAG 60.127 42.308 0.00 0.00 0.00 3.02
2416 6341 5.724370 TGAGACAGGTATAATGGGAACTGAA 59.276 40.000 0.00 0.00 0.00 3.02
2417 6342 5.277250 TGAGACAGGTATAATGGGAACTGA 58.723 41.667 0.00 0.00 0.00 3.41
2418 6343 5.614324 TGAGACAGGTATAATGGGAACTG 57.386 43.478 0.00 0.00 0.00 3.16
2419 6344 6.146760 AGATGAGACAGGTATAATGGGAACT 58.853 40.000 0.00 0.00 0.00 3.01
2420 6345 6.426646 AGATGAGACAGGTATAATGGGAAC 57.573 41.667 0.00 0.00 0.00 3.62
2421 6346 7.734865 ACATAGATGAGACAGGTATAATGGGAA 59.265 37.037 0.00 0.00 0.00 3.97
2422 6347 7.179160 CACATAGATGAGACAGGTATAATGGGA 59.821 40.741 0.00 0.00 0.00 4.37
2423 6348 7.179160 TCACATAGATGAGACAGGTATAATGGG 59.821 40.741 0.00 0.00 0.00 4.00
2424 6349 8.127150 TCACATAGATGAGACAGGTATAATGG 57.873 38.462 0.00 0.00 0.00 3.16
2425 6350 9.987272 TTTCACATAGATGAGACAGGTATAATG 57.013 33.333 0.00 0.00 0.00 1.90
2450 6375 8.120140 AGAGTACTCGTCACCTATAAGTTTTT 57.880 34.615 17.07 0.00 34.09 1.94
2451 6376 7.700022 AGAGTACTCGTCACCTATAAGTTTT 57.300 36.000 17.07 0.00 34.09 2.43
2452 6377 7.413877 CGAAGAGTACTCGTCACCTATAAGTTT 60.414 40.741 29.95 10.78 37.85 2.66
2453 6378 6.036953 CGAAGAGTACTCGTCACCTATAAGTT 59.963 42.308 29.95 11.16 37.85 2.66
2454 6379 5.523188 CGAAGAGTACTCGTCACCTATAAGT 59.477 44.000 29.95 3.53 37.85 2.24
2455 6380 5.050227 CCGAAGAGTACTCGTCACCTATAAG 60.050 48.000 29.95 15.69 37.85 1.73
2456 6381 4.813161 CCGAAGAGTACTCGTCACCTATAA 59.187 45.833 29.95 0.00 37.85 0.98
2457 6382 4.100035 TCCGAAGAGTACTCGTCACCTATA 59.900 45.833 29.95 11.62 37.85 1.31
2458 6383 3.118482 TCCGAAGAGTACTCGTCACCTAT 60.118 47.826 29.95 5.54 37.85 2.57
2459 6384 2.234661 TCCGAAGAGTACTCGTCACCTA 59.765 50.000 29.95 14.43 37.85 3.08
2460 6385 1.002888 TCCGAAGAGTACTCGTCACCT 59.997 52.381 29.95 6.90 37.85 4.00
2461 6386 1.446907 TCCGAAGAGTACTCGTCACC 58.553 55.000 29.95 11.49 37.85 4.02
2462 6387 2.225019 TGTTCCGAAGAGTACTCGTCAC 59.775 50.000 29.95 22.71 37.85 3.67
2463 6388 2.497138 TGTTCCGAAGAGTACTCGTCA 58.503 47.619 29.95 14.88 37.85 4.35
2464 6389 3.427243 CATGTTCCGAAGAGTACTCGTC 58.573 50.000 23.97 23.97 35.27 4.20
2465 6390 2.163815 CCATGTTCCGAAGAGTACTCGT 59.836 50.000 17.07 14.32 34.09 4.18
2466 6391 2.422479 TCCATGTTCCGAAGAGTACTCG 59.578 50.000 17.07 6.63 34.09 4.18
2467 6392 3.695060 TCTCCATGTTCCGAAGAGTACTC 59.305 47.826 15.41 15.41 0.00 2.59
2468 6393 3.697045 CTCTCCATGTTCCGAAGAGTACT 59.303 47.826 0.00 0.00 31.02 2.73
2469 6394 3.735514 GCTCTCCATGTTCCGAAGAGTAC 60.736 52.174 0.00 0.00 36.64 2.73
2470 6395 2.427453 GCTCTCCATGTTCCGAAGAGTA 59.573 50.000 0.00 0.00 36.64 2.59
2473 6398 1.266178 TGCTCTCCATGTTCCGAAGA 58.734 50.000 0.00 0.00 0.00 2.87
2486 6549 3.023119 TCCTCAGAGACTTCATGCTCTC 58.977 50.000 0.00 6.73 39.36 3.20
2716 6801 3.405831 TGCAATTGAGGAACTGACAGAG 58.594 45.455 10.34 0.00 41.55 3.35
2764 6868 5.703130 GCAGAGGTACTTGAGAGATTTGTTT 59.297 40.000 0.00 0.00 41.55 2.83
2775 6879 1.344438 CACAGGTGCAGAGGTACTTGA 59.656 52.381 2.42 0.00 41.55 3.02
2995 7129 4.225942 GGCCATCCATTGAGATAGGTCATA 59.774 45.833 0.00 0.00 0.00 2.15
3173 7317 3.244911 CCACACATAGTTTTCCACTCCCT 60.245 47.826 0.00 0.00 36.88 4.20
3411 7622 6.484288 ACATTTCTCACAGTGAATCCCATAA 58.516 36.000 4.41 0.00 0.00 1.90
3412 7623 6.065976 ACATTTCTCACAGTGAATCCCATA 57.934 37.500 4.41 0.00 0.00 2.74
3413 7624 4.927049 ACATTTCTCACAGTGAATCCCAT 58.073 39.130 4.41 0.00 0.00 4.00
3414 7625 4.371624 ACATTTCTCACAGTGAATCCCA 57.628 40.909 4.41 0.00 0.00 4.37
3478 7689 3.569873 AAGGCCACATACCTTTCGG 57.430 52.632 5.01 0.00 45.39 4.30
3594 7805 1.026718 GGACCCATCCAAAGCACTCG 61.027 60.000 0.00 0.00 45.47 4.18
3623 7834 2.419673 CAGTCAGCAACACAACACAGAA 59.580 45.455 0.00 0.00 0.00 3.02
3651 7862 1.069500 CAATTCACGGACAAACGGACC 60.069 52.381 0.00 0.00 38.39 4.46
3652 7863 1.662026 GCAATTCACGGACAAACGGAC 60.662 52.381 0.00 0.00 38.39 4.79
3653 7864 0.589223 GCAATTCACGGACAAACGGA 59.411 50.000 0.00 0.00 38.39 4.69
3654 7865 0.386731 GGCAATTCACGGACAAACGG 60.387 55.000 0.00 0.00 38.39 4.44
3655 7866 0.591170 AGGCAATTCACGGACAAACG 59.409 50.000 0.00 0.00 40.31 3.60
3656 7867 1.399727 CGAGGCAATTCACGGACAAAC 60.400 52.381 0.00 0.00 0.00 2.93
3657 7868 0.871722 CGAGGCAATTCACGGACAAA 59.128 50.000 0.00 0.00 0.00 2.83
3658 7869 0.250124 ACGAGGCAATTCACGGACAA 60.250 50.000 0.00 0.00 0.00 3.18
3659 7870 0.948623 CACGAGGCAATTCACGGACA 60.949 55.000 0.00 0.00 0.00 4.02
3660 7871 1.635663 CCACGAGGCAATTCACGGAC 61.636 60.000 0.00 0.00 0.00 4.79
3661 7872 1.375396 CCACGAGGCAATTCACGGA 60.375 57.895 0.00 0.00 0.00 4.69
3662 7873 2.398554 CCCACGAGGCAATTCACGG 61.399 63.158 0.00 0.00 0.00 4.94
3663 7874 3.177600 CCCACGAGGCAATTCACG 58.822 61.111 0.00 0.00 0.00 4.35
3725 8154 6.432607 TGATTCTTTGTGATCTCATCTTGC 57.567 37.500 0.00 0.00 0.00 4.01
3808 8237 2.046285 CCGGTTGAGATTGTGGGGC 61.046 63.158 0.00 0.00 0.00 5.80
3811 8240 1.156736 GTGTCCGGTTGAGATTGTGG 58.843 55.000 0.00 0.00 0.00 4.17
3829 8258 7.765695 AATTATGACACAATCTCAACCTTGT 57.234 32.000 0.00 0.00 36.04 3.16
3830 8259 8.517878 AGAAATTATGACACAATCTCAACCTTG 58.482 33.333 0.00 0.00 0.00 3.61
3831 8260 8.641498 AGAAATTATGACACAATCTCAACCTT 57.359 30.769 0.00 0.00 0.00 3.50
3832 8261 7.337942 GGAGAAATTATGACACAATCTCAACCT 59.662 37.037 0.00 0.00 34.86 3.50
3833 8262 7.121168 TGGAGAAATTATGACACAATCTCAACC 59.879 37.037 0.00 0.00 34.86 3.77
3834 8263 8.044060 TGGAGAAATTATGACACAATCTCAAC 57.956 34.615 0.00 0.00 34.86 3.18
3835 8264 7.148188 GCTGGAGAAATTATGACACAATCTCAA 60.148 37.037 0.00 0.00 34.86 3.02
3836 8265 6.317140 GCTGGAGAAATTATGACACAATCTCA 59.683 38.462 0.00 0.00 34.86 3.27
3837 8266 6.317140 TGCTGGAGAAATTATGACACAATCTC 59.683 38.462 0.00 0.00 0.00 2.75
3838 8267 6.182627 TGCTGGAGAAATTATGACACAATCT 58.817 36.000 0.00 0.00 0.00 2.40
3839 8268 6.441093 TGCTGGAGAAATTATGACACAATC 57.559 37.500 0.00 0.00 0.00 2.67
3840 8269 6.604396 TCATGCTGGAGAAATTATGACACAAT 59.396 34.615 0.00 0.00 0.00 2.71
3841 8270 5.945191 TCATGCTGGAGAAATTATGACACAA 59.055 36.000 0.00 0.00 0.00 3.33
3844 8273 5.748402 AGTCATGCTGGAGAAATTATGACA 58.252 37.500 15.04 0.00 44.04 3.58
3848 8277 6.851222 CGTAAGTCATGCTGGAGAAATTAT 57.149 37.500 0.00 0.00 0.00 1.28
3869 8298 7.655490 CATATGCCTTACTAAACCTACTACGT 58.345 38.462 0.00 0.00 0.00 3.57
3870 8299 6.585322 GCATATGCCTTACTAAACCTACTACG 59.415 42.308 17.26 0.00 34.31 3.51
3916 8352 6.925165 CACAAGAGCATTGGATGTTAGTTTTT 59.075 34.615 6.63 0.00 0.00 1.94
3945 8646 5.071370 ACTTCCACTTCGTTAGAGAGAAGA 58.929 41.667 11.53 0.00 44.76 2.87
3949 8650 3.506455 TGGACTTCCACTTCGTTAGAGAG 59.494 47.826 0.00 0.00 42.01 3.20
4002 8703 6.577427 CGCAACCTAATTAAGTGAAAACTCAC 59.423 38.462 0.00 0.00 40.69 3.51
4005 8706 5.458015 GCGCAACCTAATTAAGTGAAAACT 58.542 37.500 0.30 0.00 0.00 2.66
4010 8711 3.060736 TGGCGCAACCTAATTAAGTGA 57.939 42.857 10.83 0.00 40.22 3.41
4018 8719 4.218635 TGTGATAATTTTGGCGCAACCTAA 59.781 37.500 10.83 0.00 40.22 2.69
4024 8725 1.889170 TGGTGTGATAATTTTGGCGCA 59.111 42.857 10.83 0.00 0.00 6.09
4030 8731 6.103330 GCCGGTTTTATGGTGTGATAATTTT 58.897 36.000 1.90 0.00 0.00 1.82
4054 8755 0.950116 GAGTATCCCTACCACGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
4098 8799 3.323691 TGGTGCAGCTGAAACTACTTAGA 59.676 43.478 20.43 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.