Multiple sequence alignment - TraesCS3B01G529300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G529300 chr3B 100.000 3643 0 0 1 3643 770971473 770967831 0.000000e+00 6728.0
1 TraesCS3B01G529300 chr3B 93.745 1311 52 10 1641 2931 771171478 771172778 0.000000e+00 1940.0
2 TraesCS3B01G529300 chr3B 87.539 955 105 13 1703 2649 771054066 771053118 0.000000e+00 1092.0
3 TraesCS3B01G529300 chr3B 90.343 642 42 8 3003 3643 771174730 771175352 0.000000e+00 824.0
4 TraesCS3B01G529300 chr3B 80.498 241 34 8 3210 3448 419280170 419279941 4.840000e-39 172.0
5 TraesCS3B01G529300 chr3B 98.780 82 1 0 2927 3008 771172804 771172885 2.930000e-31 147.0
6 TraesCS3B01G529300 chr3D 91.997 1437 57 12 1603 2998 577790279 577788860 0.000000e+00 1964.0
7 TraesCS3B01G529300 chr3D 94.101 1085 41 6 1603 2686 577969040 577970102 0.000000e+00 1628.0
8 TraesCS3B01G529300 chr3D 87.487 943 114 4 1701 2641 577892931 577893871 0.000000e+00 1085.0
9 TraesCS3B01G529300 chr3D 87.649 923 107 5 1720 2637 579429346 579430266 0.000000e+00 1066.0
10 TraesCS3B01G529300 chr3D 86.373 477 53 5 3166 3641 577787963 577787498 9.020000e-141 510.0
11 TraesCS3B01G529300 chr3D 85.981 428 34 13 2733 3147 577970198 577970612 5.590000e-118 435.0
12 TraesCS3B01G529300 chr3D 89.209 278 10 4 855 1112 577968500 577968777 2.710000e-86 329.0
13 TraesCS3B01G529300 chr3D 88.849 278 11 2 855 1112 577791001 577790724 1.260000e-84 324.0
14 TraesCS3B01G529300 chr3D 89.147 258 20 6 1266 1520 577790732 577790480 7.590000e-82 315.0
15 TraesCS3B01G529300 chr3D 88.321 137 11 4 2983 3116 577788836 577788702 3.770000e-35 159.0
16 TraesCS3B01G529300 chr3D 91.111 90 8 0 1266 1355 577968769 577968858 4.940000e-24 122.0
17 TraesCS3B01G529300 chr3A 94.649 1196 52 5 1500 2691 713535681 713534494 0.000000e+00 1844.0
18 TraesCS3B01G529300 chr3A 87.698 1008 112 9 1650 2652 713623402 713622402 0.000000e+00 1164.0
19 TraesCS3B01G529300 chr3A 87.866 923 105 5 1720 2637 714614906 714615826 0.000000e+00 1077.0
20 TraesCS3B01G529300 chr3A 81.595 326 17 21 2733 3020 713534398 713534078 2.830000e-56 230.0
21 TraesCS3B01G529300 chr3A 80.135 297 22 15 855 1114 713536159 713535863 1.730000e-43 187.0
22 TraesCS3B01G529300 chr3A 93.258 89 6 0 3028 3116 713419870 713419782 8.210000e-27 132.0
23 TraesCS3B01G529300 chr3A 78.395 162 24 10 1100 1255 585704127 585704283 1.080000e-15 95.3
24 TraesCS3B01G529300 chr4D 96.805 532 13 2 278 809 488243354 488242827 0.000000e+00 885.0
25 TraesCS3B01G529300 chr4D 94.718 284 13 2 1 284 488244742 488244461 1.200000e-119 440.0
26 TraesCS3B01G529300 chr1B 95.911 538 20 2 278 813 421783263 421783800 0.000000e+00 870.0
27 TraesCS3B01G529300 chr1B 95.070 284 12 2 1 284 421781876 421782157 2.580000e-121 446.0
28 TraesCS3B01G529300 chr1B 80.498 241 34 8 3210 3448 625912679 625912450 4.840000e-39 172.0
29 TraesCS3B01G529300 chr2A 96.067 534 17 2 280 813 560170842 560170313 0.000000e+00 867.0
30 TraesCS3B01G529300 chr2A 90.892 538 40 6 278 813 439453369 439453899 0.000000e+00 713.0
31 TraesCS3B01G529300 chr2A 94.718 284 13 2 1 284 560172232 560171951 1.200000e-119 440.0
32 TraesCS3B01G529300 chr2A 80.335 239 37 5 3210 3448 736550014 736550242 4.840000e-39 172.0
33 TraesCS3B01G529300 chr7A 95.903 537 17 2 278 814 462183260 462182729 0.000000e+00 865.0
34 TraesCS3B01G529300 chr7A 90.706 538 42 7 278 813 248899414 248899945 0.000000e+00 710.0
35 TraesCS3B01G529300 chr7A 96.127 284 9 2 1 284 462184647 462184366 2.560000e-126 462.0
36 TraesCS3B01G529300 chr7A 94.982 279 12 2 6 284 248897999 248898275 1.550000e-118 436.0
37 TraesCS3B01G529300 chr7A 83.108 148 23 2 1109 1255 496609926 496610072 2.280000e-27 134.0
38 TraesCS3B01G529300 chr7A 82.781 151 23 3 1107 1255 486318514 486318663 8.210000e-27 132.0
39 TraesCS3B01G529300 chr7A 81.481 162 27 3 1107 1267 502891446 502891287 2.950000e-26 130.0
40 TraesCS3B01G529300 chr7A 82.119 151 24 3 1107 1255 485866786 485866935 3.820000e-25 126.0
41 TraesCS3B01G529300 chr7A 82.119 151 24 3 1107 1255 505172597 505172746 3.820000e-25 126.0
42 TraesCS3B01G529300 chr2D 95.725 538 20 2 278 815 41287082 41287616 0.000000e+00 863.0
43 TraesCS3B01G529300 chr2D 94.766 535 16 1 279 813 41355755 41356277 0.000000e+00 822.0
44 TraesCS3B01G529300 chr2D 95.775 284 10 2 1 284 41285733 41286014 1.190000e-124 457.0
45 TraesCS3B01G529300 chr2D 95.423 284 11 2 1 284 41354366 41354647 5.550000e-123 451.0
46 TraesCS3B01G529300 chr2D 83.832 167 22 4 1104 1268 446304218 446304055 1.750000e-33 154.0
47 TraesCS3B01G529300 chr5B 95.158 537 25 1 278 813 175294108 175294644 0.000000e+00 846.0
48 TraesCS3B01G529300 chr4A 81.743 241 35 6 3210 3450 58342717 58342486 3.710000e-45 193.0
49 TraesCS3B01G529300 chr4A 80.335 239 37 5 3210 3448 643150897 643151125 4.840000e-39 172.0
50 TraesCS3B01G529300 chr6A 80.165 242 35 8 3210 3451 560587339 560587567 6.260000e-38 169.0
51 TraesCS3B01G529300 chr5A 80.083 241 35 8 3210 3448 697057810 697058039 2.250000e-37 167.0
52 TraesCS3B01G529300 chr4B 81.325 166 27 3 1103 1267 507871185 507871347 8.210000e-27 132.0
53 TraesCS3B01G529300 chr2B 77.193 171 27 11 1104 1268 185424631 185424467 5.010000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G529300 chr3B 770967831 770971473 3642 True 6728.000000 6728 100.000000 1 3643 1 chr3B.!!$R2 3642
1 TraesCS3B01G529300 chr3B 771053118 771054066 948 True 1092.000000 1092 87.539000 1703 2649 1 chr3B.!!$R3 946
2 TraesCS3B01G529300 chr3B 771171478 771175352 3874 False 970.333333 1940 94.289333 1641 3643 3 chr3B.!!$F1 2002
3 TraesCS3B01G529300 chr3D 577892931 577893871 940 False 1085.000000 1085 87.487000 1701 2641 1 chr3D.!!$F1 940
4 TraesCS3B01G529300 chr3D 579429346 579430266 920 False 1066.000000 1066 87.649000 1720 2637 1 chr3D.!!$F2 917
5 TraesCS3B01G529300 chr3D 577787498 577791001 3503 True 654.400000 1964 88.937400 855 3641 5 chr3D.!!$R1 2786
6 TraesCS3B01G529300 chr3D 577968500 577970612 2112 False 628.500000 1628 90.100500 855 3147 4 chr3D.!!$F3 2292
7 TraesCS3B01G529300 chr3A 713622402 713623402 1000 True 1164.000000 1164 87.698000 1650 2652 1 chr3A.!!$R2 1002
8 TraesCS3B01G529300 chr3A 714614906 714615826 920 False 1077.000000 1077 87.866000 1720 2637 1 chr3A.!!$F2 917
9 TraesCS3B01G529300 chr3A 713534078 713536159 2081 True 753.666667 1844 85.459667 855 3020 3 chr3A.!!$R3 2165
10 TraesCS3B01G529300 chr4D 488242827 488244742 1915 True 662.500000 885 95.761500 1 809 2 chr4D.!!$R1 808
11 TraesCS3B01G529300 chr1B 421781876 421783800 1924 False 658.000000 870 95.490500 1 813 2 chr1B.!!$F1 812
12 TraesCS3B01G529300 chr2A 439453369 439453899 530 False 713.000000 713 90.892000 278 813 1 chr2A.!!$F1 535
13 TraesCS3B01G529300 chr2A 560170313 560172232 1919 True 653.500000 867 95.392500 1 813 2 chr2A.!!$R1 812
14 TraesCS3B01G529300 chr7A 462182729 462184647 1918 True 663.500000 865 96.015000 1 814 2 chr7A.!!$R2 813
15 TraesCS3B01G529300 chr7A 248897999 248899945 1946 False 573.000000 710 92.844000 6 813 2 chr7A.!!$F5 807
16 TraesCS3B01G529300 chr2D 41285733 41287616 1883 False 660.000000 863 95.750000 1 815 2 chr2D.!!$F1 814
17 TraesCS3B01G529300 chr2D 41354366 41356277 1911 False 636.500000 822 95.094500 1 813 2 chr2D.!!$F2 812
18 TraesCS3B01G529300 chr5B 175294108 175294644 536 False 846.000000 846 95.158000 278 813 1 chr5B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 2021 0.392193 TCTACCGGAGAGTGACGTCC 60.392 60.0 9.46 4.42 0.00 4.79 F
848 2041 0.459585 GGTGGCATGTCACGATACGT 60.460 55.0 23.35 0.00 42.36 3.57 F
915 2108 0.935831 CAACTCGACCACGTACGCAA 60.936 55.0 16.72 0.00 40.69 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 3044 0.255890 ATGCGGGTAAGAGTGGCATT 59.744 50.000 0.00 0.0 41.19 3.56 R
2455 3822 1.007038 TGGTTGTACGTCCGTGAGC 60.007 57.895 1.98 0.0 0.00 4.26 R
2849 4322 0.466963 TGAGCAGATGGATGATGCGT 59.533 50.000 0.00 0.0 44.64 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.681939 TGTTTCAATCACATCCTAAACCTAC 57.318 36.000 0.00 0.00 0.00 3.18
186 187 4.436584 GCTTCAGAATGTGTCTTGAATCCG 60.437 45.833 0.00 0.00 37.40 4.18
212 213 5.752036 TCTGAACTGATCTTGGATGTTCT 57.248 39.130 0.00 0.00 38.17 3.01
221 222 3.443052 TCTTGGATGTTCTTACCCGGTA 58.557 45.455 0.00 0.00 0.00 4.02
476 1662 0.755686 TGTTTGGTTGTTGGATGGCC 59.244 50.000 0.00 0.00 0.00 5.36
688 1878 3.120786 CGTATTCGCTCCGTTTCTGTTTT 60.121 43.478 0.00 0.00 0.00 2.43
809 2002 1.804748 GTTTCCGCTCCGTTTTCATCT 59.195 47.619 0.00 0.00 0.00 2.90
815 2008 2.194271 GCTCCGTTTTCATCTCTACCG 58.806 52.381 0.00 0.00 0.00 4.02
816 2009 2.810650 CTCCGTTTTCATCTCTACCGG 58.189 52.381 0.00 0.00 35.41 5.28
817 2010 2.426024 CTCCGTTTTCATCTCTACCGGA 59.574 50.000 9.46 0.00 40.37 5.14
818 2011 2.426024 TCCGTTTTCATCTCTACCGGAG 59.574 50.000 9.46 0.60 43.12 4.63
826 2019 3.156157 CTCTACCGGAGAGTGACGT 57.844 57.895 9.46 0.00 45.96 4.34
827 2020 1.008329 CTCTACCGGAGAGTGACGTC 58.992 60.000 9.46 9.11 45.96 4.34
828 2021 0.392193 TCTACCGGAGAGTGACGTCC 60.392 60.000 9.46 4.42 0.00 4.79
832 2025 2.567049 GGAGAGTGACGTCCGGTG 59.433 66.667 14.12 0.00 0.00 4.94
833 2026 2.567049 GAGAGTGACGTCCGGTGG 59.433 66.667 14.12 0.00 0.00 4.61
834 2027 3.628280 GAGAGTGACGTCCGGTGGC 62.628 68.421 14.12 0.00 0.00 5.01
835 2028 3.986006 GAGTGACGTCCGGTGGCA 61.986 66.667 14.12 0.00 0.00 4.92
836 2029 3.296709 GAGTGACGTCCGGTGGCAT 62.297 63.158 14.12 0.00 0.00 4.40
837 2030 3.118454 GTGACGTCCGGTGGCATG 61.118 66.667 14.12 0.00 0.00 4.06
838 2031 3.621805 TGACGTCCGGTGGCATGT 61.622 61.111 14.12 0.00 0.00 3.21
839 2032 2.813908 GACGTCCGGTGGCATGTC 60.814 66.667 3.51 0.00 0.00 3.06
840 2033 3.583276 GACGTCCGGTGGCATGTCA 62.583 63.158 3.51 0.00 0.00 3.58
841 2034 3.118454 CGTCCGGTGGCATGTCAC 61.118 66.667 22.34 22.34 36.95 3.67
842 2035 3.118454 GTCCGGTGGCATGTCACG 61.118 66.667 23.35 17.67 38.46 4.35
843 2036 3.307108 TCCGGTGGCATGTCACGA 61.307 61.111 23.35 13.59 38.46 4.35
844 2037 2.125147 CCGGTGGCATGTCACGAT 60.125 61.111 23.35 0.00 38.46 3.73
845 2038 1.142965 CCGGTGGCATGTCACGATA 59.857 57.895 23.35 0.00 38.46 2.92
846 2039 1.151777 CCGGTGGCATGTCACGATAC 61.152 60.000 23.35 9.18 38.46 2.24
847 2040 1.479420 CGGTGGCATGTCACGATACG 61.479 60.000 23.35 17.00 38.46 3.06
848 2041 0.459585 GGTGGCATGTCACGATACGT 60.460 55.000 23.35 0.00 42.36 3.57
849 2042 1.202325 GGTGGCATGTCACGATACGTA 60.202 52.381 23.35 0.00 38.32 3.57
850 2043 1.850441 GTGGCATGTCACGATACGTAC 59.150 52.381 15.79 0.00 38.32 3.67
851 2044 1.746787 TGGCATGTCACGATACGTACT 59.253 47.619 0.00 0.00 38.32 2.73
852 2045 2.944349 TGGCATGTCACGATACGTACTA 59.056 45.455 0.00 0.00 38.32 1.82
853 2046 3.242837 TGGCATGTCACGATACGTACTAC 60.243 47.826 0.00 0.00 38.32 2.73
870 2063 1.471684 CTACGCCGGAGTCAAAGTAGT 59.528 52.381 16.27 0.00 0.00 2.73
872 2065 1.888512 ACGCCGGAGTCAAAGTAGTTA 59.111 47.619 5.05 0.00 0.00 2.24
878 2071 3.251571 GGAGTCAAAGTAGTTACGCTGG 58.748 50.000 0.00 0.00 0.00 4.85
915 2108 0.935831 CAACTCGACCACGTACGCAA 60.936 55.000 16.72 0.00 40.69 4.85
1056 2286 1.396301 GCTCTCTTCATTGGAGCGTTG 59.604 52.381 0.00 0.00 42.03 4.10
1109 2339 9.877178 TCTCTCATGTTCTTATTTTCTACTTCC 57.123 33.333 0.00 0.00 0.00 3.46
1110 2340 9.883142 CTCTCATGTTCTTATTTTCTACTTCCT 57.117 33.333 0.00 0.00 0.00 3.36
1113 2343 9.151471 TCATGTTCTTATTTTCTACTTCCTTCG 57.849 33.333 0.00 0.00 0.00 3.79
1114 2344 8.936864 CATGTTCTTATTTTCTACTTCCTTCGT 58.063 33.333 0.00 0.00 0.00 3.85
1115 2345 8.897872 TGTTCTTATTTTCTACTTCCTTCGTT 57.102 30.769 0.00 0.00 0.00 3.85
1116 2346 8.985805 TGTTCTTATTTTCTACTTCCTTCGTTC 58.014 33.333 0.00 0.00 0.00 3.95
1117 2347 8.441608 GTTCTTATTTTCTACTTCCTTCGTTCC 58.558 37.037 0.00 0.00 0.00 3.62
1118 2348 7.904205 TCTTATTTTCTACTTCCTTCGTTCCT 58.096 34.615 0.00 0.00 0.00 3.36
1119 2349 9.028284 TCTTATTTTCTACTTCCTTCGTTCCTA 57.972 33.333 0.00 0.00 0.00 2.94
1120 2350 9.649167 CTTATTTTCTACTTCCTTCGTTCCTAA 57.351 33.333 0.00 0.00 0.00 2.69
1161 2391 8.433421 AAGATTCCACTACAAAATACATACGG 57.567 34.615 0.00 0.00 0.00 4.02
1162 2392 7.788026 AGATTCCACTACAAAATACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
1163 2393 8.429641 AGATTCCACTACAAAATACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
1164 2394 7.780008 TTCCACTACAAAATACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
1206 2436 8.976986 AGAGTGTGATTTCATTTATTTTGCTC 57.023 30.769 0.00 0.00 0.00 4.26
1207 2437 8.800332 AGAGTGTGATTTCATTTATTTTGCTCT 58.200 29.630 0.00 0.00 0.00 4.09
1208 2438 8.752766 AGTGTGATTTCATTTATTTTGCTCTG 57.247 30.769 0.00 0.00 0.00 3.35
1209 2439 8.362639 AGTGTGATTTCATTTATTTTGCTCTGT 58.637 29.630 0.00 0.00 0.00 3.41
1210 2440 9.624697 GTGTGATTTCATTTATTTTGCTCTGTA 57.375 29.630 0.00 0.00 0.00 2.74
1221 2451 8.896320 TTATTTTGCTCTGTAACTAGTTCACA 57.104 30.769 12.39 13.21 0.00 3.58
1222 2452 7.986085 ATTTTGCTCTGTAACTAGTTCACAT 57.014 32.000 12.39 0.00 0.00 3.21
1223 2453 6.785488 TTTGCTCTGTAACTAGTTCACATG 57.215 37.500 12.39 10.99 0.00 3.21
1224 2454 4.820897 TGCTCTGTAACTAGTTCACATGG 58.179 43.478 12.39 10.68 0.00 3.66
1225 2455 4.184629 GCTCTGTAACTAGTTCACATGGG 58.815 47.826 12.39 9.64 0.00 4.00
1226 2456 4.081642 GCTCTGTAACTAGTTCACATGGGA 60.082 45.833 12.39 0.00 0.00 4.37
1227 2457 5.568825 GCTCTGTAACTAGTTCACATGGGAA 60.569 44.000 12.39 6.21 0.00 3.97
1228 2458 6.620877 TCTGTAACTAGTTCACATGGGAAT 57.379 37.500 14.71 5.82 0.00 3.01
1229 2459 7.016153 TCTGTAACTAGTTCACATGGGAATT 57.984 36.000 14.71 12.60 0.00 2.17
1230 2460 7.458397 TCTGTAACTAGTTCACATGGGAATTT 58.542 34.615 14.71 8.22 0.00 1.82
1231 2461 7.942341 TCTGTAACTAGTTCACATGGGAATTTT 59.058 33.333 14.71 4.58 0.00 1.82
1232 2462 8.472007 TGTAACTAGTTCACATGGGAATTTTT 57.528 30.769 14.71 8.99 0.00 1.94
1233 2463 9.575868 TGTAACTAGTTCACATGGGAATTTTTA 57.424 29.630 14.71 8.05 0.00 1.52
1235 2465 8.934023 AACTAGTTCACATGGGAATTTTTAGA 57.066 30.769 14.71 0.00 0.00 2.10
1236 2466 8.934023 ACTAGTTCACATGGGAATTTTTAGAA 57.066 30.769 14.71 0.00 0.00 2.10
1237 2467 9.362151 ACTAGTTCACATGGGAATTTTTAGAAA 57.638 29.630 14.71 0.00 0.00 2.52
1238 2468 9.846248 CTAGTTCACATGGGAATTTTTAGAAAG 57.154 33.333 14.71 0.00 0.00 2.62
1239 2469 7.670364 AGTTCACATGGGAATTTTTAGAAAGG 58.330 34.615 14.71 0.00 0.00 3.11
1240 2470 6.036577 TCACATGGGAATTTTTAGAAAGGC 57.963 37.500 0.00 0.00 0.00 4.35
1241 2471 5.779771 TCACATGGGAATTTTTAGAAAGGCT 59.220 36.000 0.00 0.00 0.00 4.58
1242 2472 6.269769 TCACATGGGAATTTTTAGAAAGGCTT 59.730 34.615 0.00 0.00 0.00 4.35
1243 2473 7.453126 TCACATGGGAATTTTTAGAAAGGCTTA 59.547 33.333 0.00 0.00 0.00 3.09
1244 2474 8.260114 CACATGGGAATTTTTAGAAAGGCTTAT 58.740 33.333 0.00 0.00 0.00 1.73
1245 2475 9.487442 ACATGGGAATTTTTAGAAAGGCTTATA 57.513 29.630 0.00 0.00 0.00 0.98
1259 2489 8.921205 AGAAAGGCTTATATTTAGTAACTCGGA 58.079 33.333 0.00 0.00 0.00 4.55
1260 2490 9.194271 GAAAGGCTTATATTTAGTAACTCGGAG 57.806 37.037 0.00 2.83 0.00 4.63
1261 2491 7.229581 AGGCTTATATTTAGTAACTCGGAGG 57.770 40.000 10.23 0.00 0.00 4.30
1262 2492 6.210984 AGGCTTATATTTAGTAACTCGGAGGG 59.789 42.308 10.23 0.00 0.00 4.30
1263 2493 6.210185 GGCTTATATTTAGTAACTCGGAGGGA 59.790 42.308 10.23 0.00 0.00 4.20
1328 2559 5.395486 GTGTGTTTACGAGACAAAGCAAATC 59.605 40.000 0.00 0.00 32.76 2.17
1329 2560 4.909880 GTGTTTACGAGACAAAGCAAATCC 59.090 41.667 0.00 0.00 0.00 3.01
1335 2566 2.552315 GAGACAAAGCAAATCCACGGAA 59.448 45.455 0.00 0.00 0.00 4.30
1381 2612 4.873746 TTTGAAGAGTTCATCTCGTCCT 57.126 40.909 7.92 0.00 46.13 3.85
1409 2641 6.127842 GGTTTTTAAGAAATATGAGGGACGCA 60.128 38.462 0.00 0.00 45.75 5.24
1427 2659 4.053903 CGCAAACGTTTTGGTTCAAAAA 57.946 36.364 11.66 0.00 43.50 1.94
1471 2704 7.845066 ATTCTTGTAAAATACTCCCTCGTTC 57.155 36.000 0.00 0.00 0.00 3.95
1473 2706 6.161381 TCTTGTAAAATACTCCCTCGTTCAC 58.839 40.000 0.00 0.00 0.00 3.18
1630 2994 1.283905 GTTAACATGCCTACCCCACCT 59.716 52.381 0.00 0.00 0.00 4.00
1639 3003 1.354368 CCTACCCCACCTTTCACATGT 59.646 52.381 0.00 0.00 0.00 3.21
1652 3016 5.589855 CCTTTCACATGTATAGCCATTCACA 59.410 40.000 0.00 0.00 0.00 3.58
1660 3024 2.401583 TAGCCATTCACATCAACGCT 57.598 45.000 0.00 0.00 0.00 5.07
1680 3044 2.126228 CGACAGCTAAACGGCCGA 60.126 61.111 35.90 8.90 0.00 5.54
1754 3118 1.852067 GCGTGATCGGCAACAACCTT 61.852 55.000 3.88 0.00 37.56 3.50
2049 3416 4.473520 CGGCCATGCGGAACCTCT 62.474 66.667 2.24 0.00 0.00 3.69
2111 3478 1.783031 CGACCTCGATCCGGTTCGAT 61.783 60.000 31.65 21.19 46.16 3.59
2349 3716 3.071459 CTGTTCGACGCGATGGTGC 62.071 63.158 15.93 0.00 35.23 5.01
2643 4010 4.631813 CCTACAACATCCAGTTCAAGTAGC 59.368 45.833 0.00 0.00 38.74 3.58
2644 4011 4.357918 ACAACATCCAGTTCAAGTAGCT 57.642 40.909 0.00 0.00 38.74 3.32
2645 4012 5.483685 ACAACATCCAGTTCAAGTAGCTA 57.516 39.130 0.00 0.00 38.74 3.32
2646 4013 6.054860 ACAACATCCAGTTCAAGTAGCTAT 57.945 37.500 0.00 0.00 38.74 2.97
2647 4014 6.109359 ACAACATCCAGTTCAAGTAGCTATC 58.891 40.000 0.00 0.00 38.74 2.08
2649 4016 5.911752 ACATCCAGTTCAAGTAGCTATCTG 58.088 41.667 0.00 0.00 0.00 2.90
2772 4210 2.029290 ACTTCCGGGCGATGATACATAC 60.029 50.000 0.00 0.00 0.00 2.39
2773 4211 1.623163 TCCGGGCGATGATACATACA 58.377 50.000 0.00 0.00 0.00 2.29
2774 4212 2.176045 TCCGGGCGATGATACATACAT 58.824 47.619 0.00 0.00 0.00 2.29
2775 4213 2.165641 TCCGGGCGATGATACATACATC 59.834 50.000 0.00 0.00 40.19 3.06
2843 4316 1.076192 ATATGCCTCCAGCCATGCC 59.924 57.895 0.00 0.00 42.71 4.40
2844 4317 2.759641 ATATGCCTCCAGCCATGCCG 62.760 60.000 0.00 0.00 42.71 5.69
2873 4346 2.587194 ATCCATCTGCTCACGCGC 60.587 61.111 5.73 0.00 39.65 6.86
3016 6414 2.667199 ACTTACGTTGCGTGCCCC 60.667 61.111 0.00 0.00 41.39 5.80
3148 6552 3.512033 ACATAGCGAGAGGAGTGAAAC 57.488 47.619 0.00 0.00 0.00 2.78
3216 7324 6.372381 ACAAAAATGCAGGCCTTTGAATTATC 59.628 34.615 17.48 0.00 33.84 1.75
3302 7414 7.907389 TCAGAAATGTCACATATATAGGTCCC 58.093 38.462 0.00 0.00 0.00 4.46
3304 7416 6.792473 AGAAATGTCACATATATAGGTCCCCA 59.208 38.462 0.00 0.00 0.00 4.96
3337 7449 2.104792 AGGTGTCACATAAGCACACACT 59.895 45.455 5.12 0.00 41.93 3.55
3338 7450 2.878406 GGTGTCACATAAGCACACACTT 59.122 45.455 5.12 0.00 41.93 3.16
3339 7451 4.062293 GGTGTCACATAAGCACACACTTA 58.938 43.478 5.12 0.00 41.93 2.24
3340 7452 4.513692 GGTGTCACATAAGCACACACTTAA 59.486 41.667 5.12 0.00 41.93 1.85
3372 7484 5.698545 ACTTCAAAGAATCTTCGAAGACCTG 59.301 40.000 29.24 19.75 37.98 4.00
3380 7492 2.231478 TCTTCGAAGACCTGGATCACAC 59.769 50.000 23.74 0.00 34.32 3.82
3395 7507 6.406370 TGGATCACACTTTTCATAGTTCGAT 58.594 36.000 0.00 0.00 0.00 3.59
3399 7511 6.220201 TCACACTTTTCATAGTTCGATGACA 58.780 36.000 0.00 0.00 35.56 3.58
3487 7599 2.028484 GACAGGAACACGCCGTCA 59.972 61.111 0.00 0.00 34.14 4.35
3488 7600 1.593209 GACAGGAACACGCCGTCAA 60.593 57.895 0.00 0.00 34.14 3.18
3490 7602 0.534203 ACAGGAACACGCCGTCAAAT 60.534 50.000 0.00 0.00 0.00 2.32
3500 7612 2.159366 ACGCCGTCAAATTTTGTGTCAA 60.159 40.909 8.89 0.00 0.00 3.18
3555 7667 3.391382 AGTAGCAGGACGGCCCAC 61.391 66.667 1.76 0.00 37.41 4.61
3587 7699 1.214589 GGTTCGCTCGGCTTGTAGA 59.785 57.895 0.00 0.00 0.00 2.59
3612 7724 3.922910 AGTTGTAGGTCCGCTTTACTTC 58.077 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.511454 TGTCTTCAAACCATCTTGAACGAG 59.489 41.667 0.00 0.00 39.74 4.18
176 177 5.793817 TCAGTTCAGATTTCGGATTCAAGA 58.206 37.500 0.00 0.00 0.00 3.02
186 187 6.998968 ACATCCAAGATCAGTTCAGATTTC 57.001 37.500 0.00 0.00 0.00 2.17
212 213 2.178580 ACGTGGAATTCTACCGGGTAA 58.821 47.619 15.47 0.00 0.00 2.85
221 222 4.692625 GCAGCATATCATACGTGGAATTCT 59.307 41.667 5.23 0.00 0.00 2.40
429 1615 4.394300 AGCTCAAATCACAATAGTGCTCAC 59.606 41.667 0.00 0.00 45.49 3.51
688 1878 6.127647 ACAAATACGGAAACAGATACTACCGA 60.128 38.462 0.00 0.00 42.40 4.69
809 2002 0.392193 GGACGTCACTCTCCGGTAGA 60.392 60.000 18.91 8.21 0.00 2.59
815 2008 2.567049 CACCGGACGTCACTCTCC 59.433 66.667 18.91 0.00 0.00 3.71
816 2009 2.567049 CCACCGGACGTCACTCTC 59.433 66.667 18.91 0.00 0.00 3.20
817 2010 3.681835 GCCACCGGACGTCACTCT 61.682 66.667 18.91 0.00 0.00 3.24
818 2011 3.296709 ATGCCACCGGACGTCACTC 62.297 63.158 18.91 0.00 0.00 3.51
819 2012 3.311110 ATGCCACCGGACGTCACT 61.311 61.111 18.91 0.00 0.00 3.41
820 2013 3.118454 CATGCCACCGGACGTCAC 61.118 66.667 18.91 5.92 0.00 3.67
821 2014 3.583276 GACATGCCACCGGACGTCA 62.583 63.158 18.91 0.00 0.00 4.35
822 2015 2.813908 GACATGCCACCGGACGTC 60.814 66.667 9.46 7.13 0.00 4.34
823 2016 3.621805 TGACATGCCACCGGACGT 61.622 61.111 9.46 0.00 0.00 4.34
824 2017 3.118454 GTGACATGCCACCGGACG 61.118 66.667 9.46 0.00 0.00 4.79
825 2018 2.852495 ATCGTGACATGCCACCGGAC 62.852 60.000 9.46 0.00 33.67 4.79
826 2019 1.324005 TATCGTGACATGCCACCGGA 61.324 55.000 9.46 0.00 33.67 5.14
827 2020 1.142965 TATCGTGACATGCCACCGG 59.857 57.895 6.57 0.00 33.67 5.28
828 2021 1.479420 CGTATCGTGACATGCCACCG 61.479 60.000 6.57 0.49 33.67 4.94
829 2022 0.459585 ACGTATCGTGACATGCCACC 60.460 55.000 6.57 0.00 39.18 4.61
830 2023 1.850441 GTACGTATCGTGACATGCCAC 59.150 52.381 1.44 1.44 41.39 5.01
831 2024 1.746787 AGTACGTATCGTGACATGCCA 59.253 47.619 0.00 0.00 41.39 4.92
832 2025 2.486951 AGTACGTATCGTGACATGCC 57.513 50.000 0.00 0.00 41.39 4.40
833 2026 2.962834 CGTAGTACGTATCGTGACATGC 59.037 50.000 14.62 0.00 41.39 4.06
834 2027 2.962834 GCGTAGTACGTATCGTGACATG 59.037 50.000 22.81 0.00 44.73 3.21
835 2028 2.032549 GGCGTAGTACGTATCGTGACAT 60.033 50.000 22.81 0.00 44.73 3.06
836 2029 1.327460 GGCGTAGTACGTATCGTGACA 59.673 52.381 22.81 0.00 44.73 3.58
837 2030 1.654775 CGGCGTAGTACGTATCGTGAC 60.655 57.143 22.81 4.54 44.73 3.67
838 2031 0.576798 CGGCGTAGTACGTATCGTGA 59.423 55.000 22.81 0.00 44.73 4.35
839 2032 0.383491 CCGGCGTAGTACGTATCGTG 60.383 60.000 22.81 13.74 44.73 4.35
840 2033 0.529773 TCCGGCGTAGTACGTATCGT 60.530 55.000 22.81 0.00 44.73 3.73
841 2034 0.162507 CTCCGGCGTAGTACGTATCG 59.837 60.000 22.81 21.16 44.73 2.92
842 2035 1.193426 GACTCCGGCGTAGTACGTATC 59.807 57.143 22.81 12.30 44.73 2.24
843 2036 1.221414 GACTCCGGCGTAGTACGTAT 58.779 55.000 22.81 3.77 44.73 3.06
844 2037 0.108377 TGACTCCGGCGTAGTACGTA 60.108 55.000 22.81 6.76 44.73 3.57
845 2038 0.955428 TTGACTCCGGCGTAGTACGT 60.955 55.000 22.81 2.72 44.73 3.57
846 2039 0.168788 TTTGACTCCGGCGTAGTACG 59.831 55.000 18.37 18.37 45.88 3.67
847 2040 1.200948 ACTTTGACTCCGGCGTAGTAC 59.799 52.381 4.73 0.21 0.00 2.73
848 2041 1.538047 ACTTTGACTCCGGCGTAGTA 58.462 50.000 4.73 0.00 0.00 1.82
849 2042 1.471684 CTACTTTGACTCCGGCGTAGT 59.528 52.381 4.30 4.30 0.00 2.73
850 2043 1.471684 ACTACTTTGACTCCGGCGTAG 59.528 52.381 6.01 0.65 0.00 3.51
851 2044 1.538047 ACTACTTTGACTCCGGCGTA 58.462 50.000 6.01 0.00 0.00 4.42
852 2045 0.677842 AACTACTTTGACTCCGGCGT 59.322 50.000 6.01 0.00 0.00 5.68
853 2046 2.257034 GTAACTACTTTGACTCCGGCG 58.743 52.381 0.00 0.00 0.00 6.46
870 2063 3.592059 CTGCCTACTTTAACCAGCGTAA 58.408 45.455 0.00 0.00 0.00 3.18
872 2065 1.338769 CCTGCCTACTTTAACCAGCGT 60.339 52.381 0.00 0.00 0.00 5.07
878 2071 0.675522 TGCGCCCTGCCTACTTTAAC 60.676 55.000 4.18 0.00 45.60 2.01
915 2108 0.397816 ATAGAGGTTCTCAGCCCGCT 60.398 55.000 0.00 0.00 34.99 5.52
1056 2286 0.815734 TACTCGTAGGAACAGCAGCC 59.184 55.000 0.00 0.00 0.00 4.85
1135 2365 8.889717 CCGTATGTATTTTGTAGTGGAATCTTT 58.110 33.333 0.00 0.00 0.00 2.52
1136 2366 8.262227 TCCGTATGTATTTTGTAGTGGAATCTT 58.738 33.333 0.00 0.00 0.00 2.40
1137 2367 7.788026 TCCGTATGTATTTTGTAGTGGAATCT 58.212 34.615 0.00 0.00 0.00 2.40
1138 2368 8.495949 CATCCGTATGTATTTTGTAGTGGAATC 58.504 37.037 0.00 0.00 0.00 2.52
1139 2369 7.990886 ACATCCGTATGTATTTTGTAGTGGAAT 59.009 33.333 0.00 0.00 44.66 3.01
1140 2370 7.332557 ACATCCGTATGTATTTTGTAGTGGAA 58.667 34.615 0.00 0.00 44.66 3.53
1141 2371 6.880484 ACATCCGTATGTATTTTGTAGTGGA 58.120 36.000 0.00 0.00 44.66 4.02
1181 2411 8.800332 AGAGCAAAATAAATGAAATCACACTCT 58.200 29.630 0.00 0.00 0.00 3.24
1182 2412 8.857216 CAGAGCAAAATAAATGAAATCACACTC 58.143 33.333 0.00 0.00 0.00 3.51
1183 2413 8.362639 ACAGAGCAAAATAAATGAAATCACACT 58.637 29.630 0.00 0.00 0.00 3.55
1184 2414 8.524870 ACAGAGCAAAATAAATGAAATCACAC 57.475 30.769 0.00 0.00 0.00 3.82
1195 2425 9.332502 TGTGAACTAGTTACAGAGCAAAATAAA 57.667 29.630 8.42 0.00 0.00 1.40
1196 2426 8.896320 TGTGAACTAGTTACAGAGCAAAATAA 57.104 30.769 8.42 0.00 0.00 1.40
1197 2427 8.935844 CATGTGAACTAGTTACAGAGCAAAATA 58.064 33.333 8.42 0.00 0.00 1.40
1198 2428 7.094634 CCATGTGAACTAGTTACAGAGCAAAAT 60.095 37.037 8.42 0.00 0.00 1.82
1199 2429 6.204688 CCATGTGAACTAGTTACAGAGCAAAA 59.795 38.462 8.42 0.00 0.00 2.44
1200 2430 5.700832 CCATGTGAACTAGTTACAGAGCAAA 59.299 40.000 8.42 0.00 0.00 3.68
1201 2431 5.237815 CCATGTGAACTAGTTACAGAGCAA 58.762 41.667 8.42 0.00 0.00 3.91
1202 2432 4.322725 CCCATGTGAACTAGTTACAGAGCA 60.323 45.833 8.42 0.00 0.00 4.26
1203 2433 4.081642 TCCCATGTGAACTAGTTACAGAGC 60.082 45.833 8.42 0.00 0.00 4.09
1204 2434 5.661056 TCCCATGTGAACTAGTTACAGAG 57.339 43.478 8.42 9.70 0.00 3.35
1205 2435 6.620877 ATTCCCATGTGAACTAGTTACAGA 57.379 37.500 8.42 7.62 0.00 3.41
1206 2436 7.687941 AAATTCCCATGTGAACTAGTTACAG 57.312 36.000 8.42 7.54 0.00 2.74
1207 2437 8.472007 AAAAATTCCCATGTGAACTAGTTACA 57.528 30.769 8.42 13.07 0.00 2.41
1210 2440 8.934023 TCTAAAAATTCCCATGTGAACTAGTT 57.066 30.769 8.13 8.13 0.00 2.24
1211 2441 8.934023 TTCTAAAAATTCCCATGTGAACTAGT 57.066 30.769 0.00 0.00 0.00 2.57
1212 2442 9.846248 CTTTCTAAAAATTCCCATGTGAACTAG 57.154 33.333 0.00 0.00 0.00 2.57
1213 2443 8.802267 CCTTTCTAAAAATTCCCATGTGAACTA 58.198 33.333 0.00 0.00 0.00 2.24
1214 2444 7.670364 CCTTTCTAAAAATTCCCATGTGAACT 58.330 34.615 0.00 0.00 0.00 3.01
1215 2445 6.368791 GCCTTTCTAAAAATTCCCATGTGAAC 59.631 38.462 0.00 0.00 0.00 3.18
1216 2446 6.269769 AGCCTTTCTAAAAATTCCCATGTGAA 59.730 34.615 0.00 0.00 0.00 3.18
1217 2447 5.779771 AGCCTTTCTAAAAATTCCCATGTGA 59.220 36.000 0.00 0.00 0.00 3.58
1218 2448 6.041423 AGCCTTTCTAAAAATTCCCATGTG 57.959 37.500 0.00 0.00 0.00 3.21
1219 2449 6.686484 AAGCCTTTCTAAAAATTCCCATGT 57.314 33.333 0.00 0.00 0.00 3.21
1233 2463 8.921205 TCCGAGTTACTAAATATAAGCCTTTCT 58.079 33.333 0.00 0.00 0.00 2.52
1234 2464 9.194271 CTCCGAGTTACTAAATATAAGCCTTTC 57.806 37.037 0.00 0.00 0.00 2.62
1235 2465 8.148999 CCTCCGAGTTACTAAATATAAGCCTTT 58.851 37.037 0.00 0.00 0.00 3.11
1236 2466 7.256225 CCCTCCGAGTTACTAAATATAAGCCTT 60.256 40.741 0.00 0.00 0.00 4.35
1237 2467 6.210984 CCCTCCGAGTTACTAAATATAAGCCT 59.789 42.308 0.00 0.00 0.00 4.58
1238 2468 6.210185 TCCCTCCGAGTTACTAAATATAAGCC 59.790 42.308 0.00 0.00 0.00 4.35
1239 2469 7.224522 TCCCTCCGAGTTACTAAATATAAGC 57.775 40.000 0.00 0.00 0.00 3.09
1262 2492 4.485024 CATGCATGCAAAGGAGATACTC 57.515 45.455 26.68 0.00 0.00 2.59
1328 2559 5.682943 TGAATTCTTTAGTGTTTCCGTGG 57.317 39.130 7.05 0.00 0.00 4.94
1329 2560 7.133891 AGATGAATTCTTTAGTGTTTCCGTG 57.866 36.000 7.05 0.00 0.00 4.94
1362 2593 4.399618 CCTTAGGACGAGATGAACTCTTCA 59.600 45.833 0.00 0.00 43.04 3.02
1381 2612 9.169592 CGTCCCTCATATTTCTTAAAAACCTTA 57.830 33.333 0.00 0.00 0.00 2.69
1427 2659 5.243283 AGAATTTCTCTGCACTGCATTCTTT 59.757 36.000 3.64 0.00 38.13 2.52
1429 2661 4.333690 AGAATTTCTCTGCACTGCATTCT 58.666 39.130 3.64 6.81 38.13 2.40
1430 2662 4.698583 AGAATTTCTCTGCACTGCATTC 57.301 40.909 3.64 4.53 38.13 2.67
1431 2663 4.280174 ACAAGAATTTCTCTGCACTGCATT 59.720 37.500 3.64 0.00 38.13 3.56
1432 2664 3.825014 ACAAGAATTTCTCTGCACTGCAT 59.175 39.130 3.64 0.00 38.13 3.96
1433 2665 3.216800 ACAAGAATTTCTCTGCACTGCA 58.783 40.909 3.11 3.11 33.37 4.41
1434 2666 3.911661 ACAAGAATTTCTCTGCACTGC 57.088 42.857 0.00 0.00 33.37 4.40
1630 2994 6.827762 TGATGTGAATGGCTATACATGTGAAA 59.172 34.615 9.11 0.00 34.18 2.69
1639 3003 4.058124 GAGCGTTGATGTGAATGGCTATA 58.942 43.478 0.00 0.00 0.00 1.31
1652 3016 0.526211 TAGCTGTCGTGAGCGTTGAT 59.474 50.000 0.00 0.00 44.24 2.57
1660 3024 1.373748 GGCCGTTTAGCTGTCGTGA 60.374 57.895 0.00 0.00 0.00 4.35
1680 3044 0.255890 ATGCGGGTAAGAGTGGCATT 59.744 50.000 0.00 0.00 41.19 3.56
2093 3460 3.506108 TCGAACCGGATCGAGGTC 58.494 61.111 30.15 0.00 46.12 3.85
2111 3478 3.842925 GAAGGAGTTGGCCACCGCA 62.843 63.158 3.88 0.00 36.38 5.69
2455 3822 1.007038 TGGTTGTACGTCCGTGAGC 60.007 57.895 1.98 0.00 0.00 4.26
2457 3824 1.661480 CCTGGTTGTACGTCCGTGA 59.339 57.895 1.98 0.00 0.00 4.35
2459 3826 2.576832 CCCCTGGTTGTACGTCCGT 61.577 63.158 0.00 0.00 0.00 4.69
2645 4012 9.635404 GATGTAGGTATAGGAGTATAAGCAGAT 57.365 37.037 0.00 0.00 0.00 2.90
2646 4013 8.837737 AGATGTAGGTATAGGAGTATAAGCAGA 58.162 37.037 0.00 0.00 0.00 4.26
2647 4014 9.469097 AAGATGTAGGTATAGGAGTATAAGCAG 57.531 37.037 0.00 0.00 0.00 4.24
2649 4016 9.463902 TGAAGATGTAGGTATAGGAGTATAAGC 57.536 37.037 0.00 0.00 0.00 3.09
2748 4182 2.035449 TGTATCATCGCCCGGAAGTTAG 59.965 50.000 0.73 0.00 0.00 2.34
2798 4240 7.699812 GGATCACAAATTCATAACTGCTTCTTC 59.300 37.037 0.00 0.00 0.00 2.87
2799 4241 7.177216 TGGATCACAAATTCATAACTGCTTCTT 59.823 33.333 0.00 0.00 0.00 2.52
2800 4242 6.660521 TGGATCACAAATTCATAACTGCTTCT 59.339 34.615 0.00 0.00 0.00 2.85
2846 4319 2.735663 GAGCAGATGGATGATGCGTAAG 59.264 50.000 0.00 0.00 44.64 2.34
2847 4320 2.102925 TGAGCAGATGGATGATGCGTAA 59.897 45.455 0.00 0.00 44.64 3.18
2848 4321 1.688197 TGAGCAGATGGATGATGCGTA 59.312 47.619 0.00 0.00 44.64 4.42
2849 4322 0.466963 TGAGCAGATGGATGATGCGT 59.533 50.000 0.00 0.00 44.64 5.24
2850 4323 0.866427 GTGAGCAGATGGATGATGCG 59.134 55.000 0.00 0.00 44.64 4.73
2851 4324 0.866427 CGTGAGCAGATGGATGATGC 59.134 55.000 0.00 0.00 40.29 3.91
2873 4346 2.202570 CGTTACTGGCGAGGTCGG 60.203 66.667 0.00 0.00 40.23 4.79
3016 6414 3.776781 TACATGGGTGGACGGGCG 61.777 66.667 0.00 0.00 0.00 6.13
3023 6421 1.368641 CATCACACGTACATGGGTGG 58.631 55.000 15.32 7.12 38.46 4.61
3024 6422 1.368641 CCATCACACGTACATGGGTG 58.631 55.000 10.46 10.96 39.98 4.61
3055 6459 0.179171 TTCCTGTCTCGTCGCGATTC 60.179 55.000 14.06 0.00 34.61 2.52
3148 6552 3.120408 CGTGACAGCTCTGAAATTGGAAG 60.120 47.826 3.60 0.00 0.00 3.46
3149 6553 2.807967 CGTGACAGCTCTGAAATTGGAA 59.192 45.455 3.60 0.00 0.00 3.53
3216 7324 8.347771 ACATTGATGACCGATATGAAGATTTTG 58.652 33.333 0.00 0.00 0.00 2.44
3302 7414 7.687941 ATGTGACACCTCTTAAATAGTTTGG 57.312 36.000 2.45 0.00 0.00 3.28
3304 7416 8.947115 GCTTATGTGACACCTCTTAAATAGTTT 58.053 33.333 2.45 0.00 0.00 2.66
3313 7425 3.181455 TGTGTGCTTATGTGACACCTCTT 60.181 43.478 2.45 0.00 39.43 2.85
3338 7450 9.773328 CGAAGATTCTTTGAAGTGCAATAATTA 57.227 29.630 7.78 0.00 36.15 1.40
3339 7451 8.514594 TCGAAGATTCTTTGAAGTGCAATAATT 58.485 29.630 13.01 0.00 36.15 1.40
3340 7452 8.044060 TCGAAGATTCTTTGAAGTGCAATAAT 57.956 30.769 13.01 0.00 36.15 1.28
3372 7484 6.535150 TCATCGAACTATGAAAAGTGTGATCC 59.465 38.462 0.00 0.00 32.97 3.36
3380 7492 9.034544 TCACATATGTCATCGAACTATGAAAAG 57.965 33.333 5.07 0.00 37.61 2.27
3395 7507 5.482163 TTTCAGAGGTGTCACATATGTCA 57.518 39.130 11.60 0.00 0.00 3.58
3399 7511 7.851228 TGAACTATTTCAGAGGTGTCACATAT 58.149 34.615 5.12 0.00 36.79 1.78
3511 7623 4.497507 GCAAATTAAGAATCGGTACAGGCC 60.498 45.833 0.00 0.00 0.00 5.19
3555 7667 1.810030 GAACCTACGGCCGCAGAAG 60.810 63.158 27.21 17.47 0.00 2.85
3587 7699 3.975168 AAAGCGGACCTACAACTACAT 57.025 42.857 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.