Multiple sequence alignment - TraesCS3B01G529100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G529100 chr3B 100.000 3158 0 0 1 3158 770954739 770951582 0.000000e+00 5832.0
1 TraesCS3B01G529100 chr3B 93.004 1072 71 3 1204 2273 771253072 771254141 0.000000e+00 1561.0
2 TraesCS3B01G529100 chr3B 87.592 951 116 2 1200 2149 773542548 773543497 0.000000e+00 1101.0
3 TraesCS3B01G529100 chr3B 85.368 950 134 4 1210 2158 773568649 773569594 0.000000e+00 979.0
4 TraesCS3B01G529100 chr3B 92.288 389 29 1 1532 1920 771220742 771221129 4.600000e-153 551.0
5 TraesCS3B01G529100 chr3B 85.558 457 52 7 1 451 771193600 771194048 1.720000e-127 466.0
6 TraesCS3B01G529100 chr3B 89.164 323 19 8 1966 2273 771221219 771221540 3.820000e-104 388.0
7 TraesCS3B01G529100 chr3B 93.802 242 8 6 220 458 771251693 771251930 1.080000e-94 357.0
8 TraesCS3B01G529100 chr3B 90.610 213 19 1 2261 2473 519399110 519399321 6.670000e-72 281.0
9 TraesCS3B01G529100 chr3B 90.857 175 5 1 878 1052 771194641 771194804 1.140000e-54 224.0
10 TraesCS3B01G529100 chr3B 85.903 227 11 3 878 1102 771252781 771252988 4.100000e-54 222.0
11 TraesCS3B01G529100 chr3B 82.805 221 18 13 538 744 771251965 771252179 2.500000e-41 180.0
12 TraesCS3B01G529100 chr3B 82.018 228 20 12 1 228 771251027 771251233 1.160000e-39 174.0
13 TraesCS3B01G529100 chr3B 93.939 99 4 1 450 548 240275334 240275238 7.060000e-32 148.0
14 TraesCS3B01G529100 chr3B 91.667 108 5 3 441 548 766128286 766128183 2.540000e-31 147.0
15 TraesCS3B01G529100 chr3B 89.286 56 5 1 787 841 771194304 771194359 5.650000e-08 69.4
16 TraesCS3B01G529100 chr3D 91.678 1418 80 19 878 2273 578052466 578053867 0.000000e+00 1930.0
17 TraesCS3B01G529100 chr3D 90.169 1424 100 22 878 2273 577658327 577656916 0.000000e+00 1818.0
18 TraesCS3B01G529100 chr3D 87.684 950 117 0 1200 2149 579292674 579293623 0.000000e+00 1107.0
19 TraesCS3B01G529100 chr3D 85.670 649 72 10 2526 3158 20687020 20686377 0.000000e+00 664.0
20 TraesCS3B01G529100 chr3D 82.869 502 83 3 1210 1709 579305617 579306117 6.210000e-122 448.0
21 TraesCS3B01G529100 chr3D 77.567 789 105 44 1 744 578051057 578051818 8.150000e-111 411.0
22 TraesCS3B01G529100 chr3D 88.546 227 21 3 230 453 577659215 577658991 1.440000e-68 270.0
23 TraesCS3B01G529100 chr3D 81.043 211 23 14 546 744 577658924 577658719 5.460000e-33 152.0
24 TraesCS3B01G529100 chr3D 92.308 104 5 3 433 536 603574472 603574572 9.130000e-31 145.0
25 TraesCS3B01G529100 chr3D 73.451 226 54 6 1850 2072 578259719 578259497 2.610000e-11 80.5
26 TraesCS3B01G529100 chr3D 83.750 80 10 2 764 841 577658733 577658655 4.370000e-09 73.1
27 TraesCS3B01G529100 chr3D 87.500 56 6 1 787 841 578051828 578051883 2.630000e-06 63.9
28 TraesCS3B01G529100 chr3A 86.609 926 124 0 1200 2125 714535154 714536079 0.000000e+00 1024.0
29 TraesCS3B01G529100 chr3A 85.504 952 129 7 1210 2158 714541357 714542302 0.000000e+00 985.0
30 TraesCS3B01G529100 chr3A 87.773 229 23 4 227 451 713217427 713217200 2.420000e-66 263.0
31 TraesCS3B01G529100 chr3A 92.814 167 11 1 878 1044 713216335 713216170 1.130000e-59 241.0
32 TraesCS3B01G529100 chr3A 78.067 269 48 9 1844 2102 575132906 575132639 3.260000e-35 159.0
33 TraesCS3B01G529100 chr4D 87.538 650 60 11 2523 3158 487405370 487404728 0.000000e+00 732.0
34 TraesCS3B01G529100 chr4D 87.152 646 66 11 2526 3158 133736206 133735565 0.000000e+00 717.0
35 TraesCS3B01G529100 chr4D 84.579 642 72 15 2530 3158 351687780 351687153 2.080000e-171 612.0
36 TraesCS3B01G529100 chr2B 86.244 647 66 13 2528 3158 160751965 160751326 0.000000e+00 680.0
37 TraesCS3B01G529100 chr2B 87.558 217 25 2 2261 2475 39161143 39160927 1.880000e-62 250.0
38 TraesCS3B01G529100 chr2B 89.474 114 7 3 436 548 468332941 468333050 4.250000e-29 139.0
39 TraesCS3B01G529100 chr5D 85.670 649 69 12 2526 3158 41123964 41123324 0.000000e+00 662.0
40 TraesCS3B01G529100 chr1B 84.699 647 82 11 2524 3158 648129740 648130381 5.750000e-177 630.0
41 TraesCS3B01G529100 chr1B 89.908 218 20 1 2261 2476 589055878 589055661 2.400000e-71 279.0
42 TraesCS3B01G529100 chr1B 89.100 211 21 2 2261 2470 553450062 553450271 8.690000e-66 261.0
43 TraesCS3B01G529100 chr1A 84.485 651 74 18 2526 3158 555394939 555394298 4.480000e-173 617.0
44 TraesCS3B01G529100 chr1A 77.869 244 36 13 1844 2072 504616124 504616364 5.490000e-28 135.0
45 TraesCS3B01G529100 chr6A 84.292 643 84 11 2526 3158 614976703 614976068 2.080000e-171 612.0
46 TraesCS3B01G529100 chr6A 93.939 99 4 1 450 548 308174324 308174420 7.060000e-32 148.0
47 TraesCS3B01G529100 chr6B 91.080 213 18 1 2261 2472 352091755 352091543 1.430000e-73 287.0
48 TraesCS3B01G529100 chr6B 88.688 221 24 1 2261 2480 350017047 350016827 5.190000e-68 268.0
49 TraesCS3B01G529100 chr6B 88.128 219 22 4 2264 2480 405058897 405059113 1.120000e-64 257.0
50 TraesCS3B01G529100 chr6B 96.591 88 3 0 448 535 654640644 654640731 2.540000e-31 147.0
51 TraesCS3B01G529100 chr6B 91.509 106 6 3 444 548 424080609 424080506 3.280000e-30 143.0
52 TraesCS3B01G529100 chr5B 88.626 211 22 1 2262 2470 622627013 622626803 4.040000e-64 255.0
53 TraesCS3B01G529100 chr4B 86.842 228 27 2 2259 2483 4781539 4781312 5.230000e-63 252.0
54 TraesCS3B01G529100 chr4B 96.591 88 3 0 448 535 541473604 541473691 2.540000e-31 147.0
55 TraesCS3B01G529100 chr1D 90.265 113 5 6 435 544 298620969 298620860 3.280000e-30 143.0
56 TraesCS3B01G529100 chr1D 77.869 244 36 13 1844 2072 408529679 408529919 5.490000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G529100 chr3B 770951582 770954739 3157 True 5832.000000 5832 100.000000 1 3158 1 chr3B.!!$R3 3157
1 TraesCS3B01G529100 chr3B 773542548 773543497 949 False 1101.000000 1101 87.592000 1200 2149 1 chr3B.!!$F2 949
2 TraesCS3B01G529100 chr3B 773568649 773569594 945 False 979.000000 979 85.368000 1210 2158 1 chr3B.!!$F3 948
3 TraesCS3B01G529100 chr3B 771251027 771254141 3114 False 498.800000 1561 87.506400 1 2273 5 chr3B.!!$F6 2272
4 TraesCS3B01G529100 chr3B 771220742 771221540 798 False 469.500000 551 90.726000 1532 2273 2 chr3B.!!$F5 741
5 TraesCS3B01G529100 chr3B 771193600 771194804 1204 False 253.133333 466 88.567000 1 1052 3 chr3B.!!$F4 1051
6 TraesCS3B01G529100 chr3D 579292674 579293623 949 False 1107.000000 1107 87.684000 1200 2149 1 chr3D.!!$F1 949
7 TraesCS3B01G529100 chr3D 578051057 578053867 2810 False 801.633333 1930 85.581667 1 2273 3 chr3D.!!$F4 2272
8 TraesCS3B01G529100 chr3D 20686377 20687020 643 True 664.000000 664 85.670000 2526 3158 1 chr3D.!!$R1 632
9 TraesCS3B01G529100 chr3D 577656916 577659215 2299 True 578.275000 1818 85.877000 230 2273 4 chr3D.!!$R3 2043
10 TraesCS3B01G529100 chr3D 579305617 579306117 500 False 448.000000 448 82.869000 1210 1709 1 chr3D.!!$F2 499
11 TraesCS3B01G529100 chr3A 714535154 714536079 925 False 1024.000000 1024 86.609000 1200 2125 1 chr3A.!!$F1 925
12 TraesCS3B01G529100 chr3A 714541357 714542302 945 False 985.000000 985 85.504000 1210 2158 1 chr3A.!!$F2 948
13 TraesCS3B01G529100 chr3A 713216170 713217427 1257 True 252.000000 263 90.293500 227 1044 2 chr3A.!!$R2 817
14 TraesCS3B01G529100 chr4D 487404728 487405370 642 True 732.000000 732 87.538000 2523 3158 1 chr4D.!!$R3 635
15 TraesCS3B01G529100 chr4D 133735565 133736206 641 True 717.000000 717 87.152000 2526 3158 1 chr4D.!!$R1 632
16 TraesCS3B01G529100 chr4D 351687153 351687780 627 True 612.000000 612 84.579000 2530 3158 1 chr4D.!!$R2 628
17 TraesCS3B01G529100 chr2B 160751326 160751965 639 True 680.000000 680 86.244000 2528 3158 1 chr2B.!!$R2 630
18 TraesCS3B01G529100 chr5D 41123324 41123964 640 True 662.000000 662 85.670000 2526 3158 1 chr5D.!!$R1 632
19 TraesCS3B01G529100 chr1B 648129740 648130381 641 False 630.000000 630 84.699000 2524 3158 1 chr1B.!!$F2 634
20 TraesCS3B01G529100 chr1A 555394298 555394939 641 True 617.000000 617 84.485000 2526 3158 1 chr1A.!!$R1 632
21 TraesCS3B01G529100 chr6A 614976068 614976703 635 True 612.000000 612 84.292000 2526 3158 1 chr6A.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.109086 TCTCGCAGGAGAAAGAAGCG 60.109 55.0 0.00 0.00 46.11 4.68 F
77 78 0.251341 ACTTGCCCATCCCAAGACAC 60.251 55.0 8.01 0.00 41.64 3.67 F
1095 2716 0.317854 TCAACATAGCCGATCGAGCG 60.318 55.0 17.57 17.57 34.64 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 2633 0.036577 AGCGTGCAGAGAGAAGCAAT 60.037 50.0 0.0 0.0 43.20 3.56 R
1151 2805 0.541063 TACGCTGTGGGAGAAGGTGA 60.541 55.0 0.0 0.0 0.00 4.02 R
2781 4510 0.463116 GGCGTCCATCGGGTTACAAT 60.463 55.0 0.0 0.0 40.26 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.109086 TCTCGCAGGAGAAAGAAGCG 60.109 55.000 0.00 0.00 46.11 4.68
57 58 3.417101 CACCTTACACAAACATAGCCCA 58.583 45.455 0.00 0.00 0.00 5.36
74 75 0.251742 CCAACTTGCCCATCCCAAGA 60.252 55.000 8.01 0.00 41.64 3.02
77 78 0.251341 ACTTGCCCATCCCAAGACAC 60.251 55.000 8.01 0.00 41.64 3.67
78 79 1.303236 TTGCCCATCCCAAGACACG 60.303 57.895 0.00 0.00 0.00 4.49
81 82 1.078426 CCCATCCCAAGACACGGTC 60.078 63.158 0.00 0.00 0.00 4.79
126 127 3.963428 ACTGCTCCGACTTCATACTTT 57.037 42.857 0.00 0.00 0.00 2.66
127 128 4.273148 ACTGCTCCGACTTCATACTTTT 57.727 40.909 0.00 0.00 0.00 2.27
128 129 4.642429 ACTGCTCCGACTTCATACTTTTT 58.358 39.130 0.00 0.00 0.00 1.94
151 152 2.988684 GGGCATGCCAAACGGTCA 60.989 61.111 36.56 0.00 37.98 4.02
167 168 1.156736 GTCAACCACGAAGGACATGG 58.843 55.000 0.00 0.00 41.22 3.66
258 727 5.332743 TGTAGAAATGCCCTTCCAAATTCT 58.667 37.500 0.00 0.00 32.89 2.40
264 733 2.892852 TGCCCTTCCAAATTCTTGACTG 59.107 45.455 0.00 0.00 34.14 3.51
265 734 2.353109 GCCCTTCCAAATTCTTGACTGC 60.353 50.000 0.00 0.00 34.14 4.40
367 857 0.321564 CATCACCCTGACTGGCGAAA 60.322 55.000 0.00 0.00 0.00 3.46
368 858 0.620556 ATCACCCTGACTGGCGAAAT 59.379 50.000 0.00 0.00 0.00 2.17
468 1011 5.888901 ACATATATACTCCCTCCGTCTCAA 58.111 41.667 0.00 0.00 0.00 3.02
469 1012 6.312529 ACATATATACTCCCTCCGTCTCAAA 58.687 40.000 0.00 0.00 0.00 2.69
470 1013 6.781014 ACATATATACTCCCTCCGTCTCAAAA 59.219 38.462 0.00 0.00 0.00 2.44
471 1014 7.455008 ACATATATACTCCCTCCGTCTCAAAAT 59.545 37.037 0.00 0.00 0.00 1.82
473 1016 7.850935 ATATACTCCCTCCGTCTCAAAATAA 57.149 36.000 0.00 0.00 0.00 1.40
474 1017 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
476 1019 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
477 1020 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
479 1022 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
481 1024 5.120830 CCTCCGTCTCAAAATAAGTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
482 1025 5.849510 TCCGTCTCAAAATAAGTGTCTTGA 58.150 37.500 0.00 0.00 0.00 3.02
483 1026 5.926542 TCCGTCTCAAAATAAGTGTCTTGAG 59.073 40.000 4.63 4.63 43.97 3.02
486 1029 6.073548 CGTCTCAAAATAAGTGTCTTGAGCTT 60.074 38.462 5.91 0.00 42.87 3.74
487 1030 7.116376 CGTCTCAAAATAAGTGTCTTGAGCTTA 59.884 37.037 5.91 0.00 42.87 3.09
489 1032 8.150945 TCTCAAAATAAGTGTCTTGAGCTTAGT 58.849 33.333 5.91 0.00 42.87 2.24
490 1033 9.424319 CTCAAAATAAGTGTCTTGAGCTTAGTA 57.576 33.333 0.00 0.00 38.63 1.82
491 1034 9.204570 TCAAAATAAGTGTCTTGAGCTTAGTAC 57.795 33.333 0.00 0.00 0.00 2.73
492 1035 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
493 1036 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
494 1037 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
495 1038 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
496 1039 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
497 1040 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
498 1041 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
499 1042 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
500 1043 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
501 1044 9.502091 TGTCTTGAGCTTAGTACAAATTTGTAT 57.498 29.630 28.69 20.33 44.59 2.29
526 1069 9.694137 ATTAGAGTTAGTACAAAGTTGAGACAC 57.306 33.333 0.00 0.00 0.00 3.67
527 1070 7.349412 AGAGTTAGTACAAAGTTGAGACACT 57.651 36.000 0.00 0.00 0.00 3.55
528 1071 7.783042 AGAGTTAGTACAAAGTTGAGACACTT 58.217 34.615 0.00 0.00 38.74 3.16
529 1072 8.910944 AGAGTTAGTACAAAGTTGAGACACTTA 58.089 33.333 0.00 0.00 35.87 2.24
530 1073 9.694137 GAGTTAGTACAAAGTTGAGACACTTAT 57.306 33.333 0.00 0.00 35.87 1.73
535 1078 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
536 1079 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
545 1088 5.643777 AGACACTTATTTTGGAAGATGGACG 59.356 40.000 0.00 0.00 0.00 4.79
650 1199 0.949397 CACTTGCATGCAGTCAGTGT 59.051 50.000 30.19 17.61 31.40 3.55
651 1200 1.335810 CACTTGCATGCAGTCAGTGTT 59.664 47.619 30.19 7.90 31.40 3.32
652 1201 2.026641 ACTTGCATGCAGTCAGTGTTT 58.973 42.857 21.50 0.00 0.00 2.83
653 1202 2.223641 ACTTGCATGCAGTCAGTGTTTG 60.224 45.455 21.50 4.95 0.00 2.93
656 1208 1.334556 GCATGCAGTCAGTGTTTGTGA 59.665 47.619 14.21 0.00 0.00 3.58
660 1212 3.544684 TGCAGTCAGTGTTTGTGAGATT 58.455 40.909 0.00 0.00 0.00 2.40
663 1215 5.588246 TGCAGTCAGTGTTTGTGAGATTTTA 59.412 36.000 0.00 0.00 0.00 1.52
674 1226 9.107177 TGTTTGTGAGATTTTATTTTTGTGCAT 57.893 25.926 0.00 0.00 0.00 3.96
691 1243 6.831727 TGTGCATTCAGTGAAAGATTTTTG 57.168 33.333 10.14 2.86 0.00 2.44
697 1249 8.268738 GCATTCAGTGAAAGATTTTTGTTGTAC 58.731 33.333 10.14 0.00 0.00 2.90
698 1250 9.520204 CATTCAGTGAAAGATTTTTGTTGTACT 57.480 29.630 10.14 0.00 0.00 2.73
701 1253 9.352784 TCAGTGAAAGATTTTTGTTGTACTTTG 57.647 29.630 0.00 0.00 0.00 2.77
702 1254 8.110002 CAGTGAAAGATTTTTGTTGTACTTTGC 58.890 33.333 0.00 0.00 0.00 3.68
705 1261 8.655092 TGAAAGATTTTTGTTGTACTTTGCAAG 58.345 29.630 0.00 0.00 0.00 4.01
744 1481 2.618045 GCCACTGGCTGGTAATGTAGTT 60.618 50.000 13.28 0.00 46.69 2.24
745 1482 3.686016 CCACTGGCTGGTAATGTAGTTT 58.314 45.455 0.00 0.00 34.90 2.66
746 1483 4.079253 CCACTGGCTGGTAATGTAGTTTT 58.921 43.478 0.00 0.00 34.90 2.43
774 1511 6.757897 TTTTGAGAATTCGGCTGATAATGT 57.242 33.333 0.00 0.00 0.00 2.71
775 1512 7.857734 TTTTGAGAATTCGGCTGATAATGTA 57.142 32.000 0.00 0.00 0.00 2.29
776 1513 7.482654 TTTGAGAATTCGGCTGATAATGTAG 57.517 36.000 0.00 0.00 0.00 2.74
777 1514 6.405278 TGAGAATTCGGCTGATAATGTAGA 57.595 37.500 0.00 0.00 0.00 2.59
778 1515 6.216569 TGAGAATTCGGCTGATAATGTAGAC 58.783 40.000 0.00 0.00 0.00 2.59
779 1516 6.040955 TGAGAATTCGGCTGATAATGTAGACT 59.959 38.462 0.00 0.00 0.00 3.24
780 1517 7.230712 TGAGAATTCGGCTGATAATGTAGACTA 59.769 37.037 0.00 0.00 0.00 2.59
781 1518 7.371936 AGAATTCGGCTGATAATGTAGACTAC 58.628 38.462 5.62 5.62 0.00 2.73
782 1519 6.650427 ATTCGGCTGATAATGTAGACTACA 57.350 37.500 17.43 17.43 43.80 2.74
834 1882 4.398319 CTGAGTGGGCCTTAGAAAAGAAA 58.602 43.478 4.53 0.00 34.37 2.52
836 1884 6.134535 TGAGTGGGCCTTAGAAAAGAAATA 57.865 37.500 4.53 0.00 34.37 1.40
841 1889 8.113462 AGTGGGCCTTAGAAAAGAAATACATTA 58.887 33.333 4.53 0.00 34.37 1.90
867 2457 7.775053 TTTTGTGTATGCTTTTCCTCCTATT 57.225 32.000 0.00 0.00 0.00 1.73
903 2508 0.601576 TGAACAATCCACCGTCCGTG 60.602 55.000 0.00 0.00 42.62 4.94
1011 2630 9.391006 ACGGTACACAATATTATGATTGTTTCT 57.609 29.630 0.00 0.00 45.65 2.52
1044 2663 2.418976 CTCTGCACGCTACTACTACACA 59.581 50.000 0.00 0.00 0.00 3.72
1045 2664 2.161012 TCTGCACGCTACTACTACACAC 59.839 50.000 0.00 0.00 0.00 3.82
1046 2665 1.135888 TGCACGCTACTACTACACACG 60.136 52.381 0.00 0.00 0.00 4.49
1047 2666 1.531912 CACGCTACTACTACACACGC 58.468 55.000 0.00 0.00 0.00 5.34
1048 2667 1.135888 CACGCTACTACTACACACGCA 60.136 52.381 0.00 0.00 0.00 5.24
1049 2668 1.135859 ACGCTACTACTACACACGCAC 60.136 52.381 0.00 0.00 0.00 5.34
1050 2669 1.531912 GCTACTACTACACACGCACG 58.468 55.000 0.00 0.00 0.00 5.34
1051 2670 1.792993 GCTACTACTACACACGCACGG 60.793 57.143 0.00 0.00 0.00 4.94
1081 2700 5.413213 CGGTTTGGGTCTGTATAAATCAACA 59.587 40.000 0.00 0.00 0.00 3.33
1082 2701 6.094881 CGGTTTGGGTCTGTATAAATCAACAT 59.905 38.462 0.00 0.00 0.00 2.71
1095 2716 0.317854 TCAACATAGCCGATCGAGCG 60.318 55.000 17.57 17.57 34.64 5.03
1102 2739 4.420143 CCGATCGAGCGGTTCATT 57.580 55.556 32.79 0.00 46.07 2.57
1105 2742 1.277326 CGATCGAGCGGTTCATTCAA 58.723 50.000 16.65 0.00 0.00 2.69
1132 2781 5.571741 GTGCACACATTGATCTTCATTCTTG 59.428 40.000 13.17 0.00 0.00 3.02
1142 2796 3.067106 TCTTCATTCTTGAACTGCGGTC 58.933 45.455 0.00 0.00 36.94 4.79
1151 2805 2.020720 TGAACTGCGGTCACAATTTGT 58.979 42.857 0.00 0.00 0.00 2.83
1155 2809 0.665835 TGCGGTCACAATTTGTCACC 59.334 50.000 12.20 12.20 0.00 4.02
1160 2814 3.058914 CGGTCACAATTTGTCACCTTCTC 60.059 47.826 18.78 0.00 0.00 2.87
1162 2816 3.253432 GTCACAATTTGTCACCTTCTCCC 59.747 47.826 0.00 0.00 0.00 4.30
1163 2817 3.117701 TCACAATTTGTCACCTTCTCCCA 60.118 43.478 0.00 0.00 0.00 4.37
1164 2818 3.004734 CACAATTTGTCACCTTCTCCCAC 59.995 47.826 0.00 0.00 0.00 4.61
1166 2820 2.638480 TTTGTCACCTTCTCCCACAG 57.362 50.000 0.00 0.00 0.00 3.66
1177 2831 1.899814 TCTCCCACAGCGTACAAATCT 59.100 47.619 0.00 0.00 0.00 2.40
1185 2839 3.427528 ACAGCGTACAAATCTGTAACGTG 59.572 43.478 0.00 0.00 39.75 4.49
1186 2840 2.991190 AGCGTACAAATCTGTAACGTGG 59.009 45.455 0.00 0.00 39.75 4.94
1188 2842 3.319755 CGTACAAATCTGTAACGTGGGT 58.680 45.455 0.00 0.00 39.75 4.51
1189 2843 4.484236 CGTACAAATCTGTAACGTGGGTA 58.516 43.478 0.00 0.00 39.75 3.69
1190 2844 4.324402 CGTACAAATCTGTAACGTGGGTAC 59.676 45.833 0.00 0.00 39.75 3.34
1191 2845 4.612264 ACAAATCTGTAACGTGGGTACT 57.388 40.909 0.00 0.00 32.54 2.73
1192 2846 5.726980 ACAAATCTGTAACGTGGGTACTA 57.273 39.130 0.00 0.00 32.54 1.82
1193 2847 6.290294 ACAAATCTGTAACGTGGGTACTAT 57.710 37.500 0.00 0.00 32.54 2.12
1194 2848 6.103997 ACAAATCTGTAACGTGGGTACTATG 58.896 40.000 0.00 0.00 32.54 2.23
1195 2849 4.931661 ATCTGTAACGTGGGTACTATGG 57.068 45.455 0.00 0.00 0.00 2.74
1196 2850 3.025978 TCTGTAACGTGGGTACTATGGG 58.974 50.000 0.00 0.00 0.00 4.00
1197 2851 2.101917 CTGTAACGTGGGTACTATGGGG 59.898 54.545 0.00 0.00 0.00 4.96
1198 2852 2.110578 GTAACGTGGGTACTATGGGGT 58.889 52.381 0.00 0.00 0.00 4.95
1239 2893 3.371097 CTCGGTGGGCGTGTGCTAT 62.371 63.158 0.00 0.00 42.25 2.97
1625 3280 2.454832 ATATCGCAGGCCACCATCGG 62.455 60.000 5.01 0.00 0.00 4.18
1764 3419 0.166597 TCGTCTACACGTACAAGGCG 59.833 55.000 10.63 10.63 46.76 5.52
1857 3512 0.949105 ACCAGAACATGTTCGACGCC 60.949 55.000 28.18 8.57 43.97 5.68
1863 3518 0.944311 ACATGTTCGACGCCAGTGTC 60.944 55.000 0.00 1.16 35.49 3.67
2072 3771 3.430218 GTGTTCTCCATGTTCAACGAGAG 59.570 47.826 0.00 0.00 33.15 3.20
2158 3857 1.081892 CATCACCTTCGGCAAGTGAG 58.918 55.000 0.00 0.00 0.00 3.51
2161 3860 1.004440 ACCTTCGGCAAGTGAGCTC 60.004 57.895 6.82 6.82 34.17 4.09
2162 3861 1.294780 CCTTCGGCAAGTGAGCTCT 59.705 57.895 16.19 0.00 34.17 4.09
2170 3872 3.677148 CGGCAAGTGAGCTCTTATTGAGA 60.677 47.826 22.20 0.00 45.39 3.27
2206 3914 2.545596 ATGTACGCGGCCATGCATG 61.546 57.895 20.19 20.19 34.15 4.06
2207 3915 2.894879 GTACGCGGCCATGCATGA 60.895 61.111 28.31 2.78 34.15 3.07
2273 3990 5.695816 TGTGTGGCTGAATTTTAAGCATTTC 59.304 36.000 9.93 0.00 41.36 2.17
2274 3991 5.695816 GTGTGGCTGAATTTTAAGCATTTCA 59.304 36.000 9.93 0.00 41.36 2.69
2275 3992 5.695816 TGTGGCTGAATTTTAAGCATTTCAC 59.304 36.000 9.93 8.81 41.36 3.18
2276 3993 5.120674 GTGGCTGAATTTTAAGCATTTCACC 59.879 40.000 9.93 0.00 41.36 4.02
2277 3994 4.631377 GGCTGAATTTTAAGCATTTCACCC 59.369 41.667 9.93 0.00 41.36 4.61
2278 3995 4.631377 GCTGAATTTTAAGCATTTCACCCC 59.369 41.667 4.40 0.00 39.31 4.95
2279 3996 4.815269 TGAATTTTAAGCATTTCACCCCG 58.185 39.130 0.00 0.00 0.00 5.73
2280 3997 4.524714 TGAATTTTAAGCATTTCACCCCGA 59.475 37.500 0.00 0.00 0.00 5.14
2281 3998 5.011125 TGAATTTTAAGCATTTCACCCCGAA 59.989 36.000 0.00 0.00 0.00 4.30
2282 3999 3.926821 TTTAAGCATTTCACCCCGAAC 57.073 42.857 0.00 0.00 31.73 3.95
2283 4000 1.444836 TAAGCATTTCACCCCGAACG 58.555 50.000 0.00 0.00 31.73 3.95
2284 4001 0.536460 AAGCATTTCACCCCGAACGT 60.536 50.000 0.00 0.00 31.73 3.99
2285 4002 0.536460 AGCATTTCACCCCGAACGTT 60.536 50.000 0.00 0.00 31.73 3.99
2286 4003 0.312729 GCATTTCACCCCGAACGTTT 59.687 50.000 0.46 0.00 31.73 3.60
2287 4004 1.269361 GCATTTCACCCCGAACGTTTT 60.269 47.619 0.46 0.00 31.73 2.43
2288 4005 2.800273 GCATTTCACCCCGAACGTTTTT 60.800 45.455 0.46 0.00 31.73 1.94
2289 4006 3.550436 GCATTTCACCCCGAACGTTTTTA 60.550 43.478 0.46 0.00 31.73 1.52
2290 4007 3.689309 TTTCACCCCGAACGTTTTTAC 57.311 42.857 0.46 0.00 31.73 2.01
2291 4008 2.322355 TCACCCCGAACGTTTTTACA 57.678 45.000 0.46 0.00 0.00 2.41
2292 4009 2.848691 TCACCCCGAACGTTTTTACAT 58.151 42.857 0.46 0.00 0.00 2.29
2293 4010 2.548904 TCACCCCGAACGTTTTTACATG 59.451 45.455 0.46 0.00 0.00 3.21
2294 4011 2.548904 CACCCCGAACGTTTTTACATGA 59.451 45.455 0.46 0.00 0.00 3.07
2295 4012 2.549329 ACCCCGAACGTTTTTACATGAC 59.451 45.455 0.46 0.00 0.00 3.06
2296 4013 2.548904 CCCCGAACGTTTTTACATGACA 59.451 45.455 0.46 0.00 0.00 3.58
2297 4014 3.003482 CCCCGAACGTTTTTACATGACAA 59.997 43.478 0.46 0.00 0.00 3.18
2298 4015 3.969981 CCCGAACGTTTTTACATGACAAC 59.030 43.478 0.46 0.00 0.00 3.32
2299 4016 4.260866 CCCGAACGTTTTTACATGACAACT 60.261 41.667 0.46 0.00 0.00 3.16
2300 4017 5.267776 CCGAACGTTTTTACATGACAACTT 58.732 37.500 0.46 0.00 0.00 2.66
2301 4018 5.740099 CCGAACGTTTTTACATGACAACTTT 59.260 36.000 0.46 0.00 0.00 2.66
2302 4019 6.906143 CCGAACGTTTTTACATGACAACTTTA 59.094 34.615 0.46 0.00 0.00 1.85
2303 4020 7.111041 CCGAACGTTTTTACATGACAACTTTAG 59.889 37.037 0.46 0.00 0.00 1.85
2304 4021 7.637132 CGAACGTTTTTACATGACAACTTTAGT 59.363 33.333 0.46 0.00 0.00 2.24
2305 4022 9.281075 GAACGTTTTTACATGACAACTTTAGTT 57.719 29.630 0.46 0.00 39.12 2.24
2318 4035 2.806244 ACTTTAGTTGACGTGATGTGGC 59.194 45.455 0.00 0.00 0.00 5.01
2319 4036 2.535012 TTAGTTGACGTGATGTGGCA 57.465 45.000 0.00 0.00 0.00 4.92
2320 4037 2.535012 TAGTTGACGTGATGTGGCAA 57.465 45.000 0.00 0.00 0.00 4.52
2321 4038 1.896220 AGTTGACGTGATGTGGCAAT 58.104 45.000 0.00 0.00 0.00 3.56
2322 4039 2.229792 AGTTGACGTGATGTGGCAATT 58.770 42.857 0.00 0.00 0.00 2.32
2323 4040 2.622942 AGTTGACGTGATGTGGCAATTT 59.377 40.909 0.00 0.00 0.00 1.82
2324 4041 3.068024 AGTTGACGTGATGTGGCAATTTT 59.932 39.130 0.00 0.00 0.00 1.82
2325 4042 4.277174 AGTTGACGTGATGTGGCAATTTTA 59.723 37.500 0.00 0.00 0.00 1.52
2326 4043 4.418013 TGACGTGATGTGGCAATTTTAG 57.582 40.909 0.00 0.00 0.00 1.85
2327 4044 3.818210 TGACGTGATGTGGCAATTTTAGT 59.182 39.130 0.00 0.00 0.00 2.24
2328 4045 4.277174 TGACGTGATGTGGCAATTTTAGTT 59.723 37.500 0.00 0.00 0.00 2.24
2329 4046 4.545610 ACGTGATGTGGCAATTTTAGTTG 58.454 39.130 0.00 0.00 0.00 3.16
2330 4047 4.037446 ACGTGATGTGGCAATTTTAGTTGT 59.963 37.500 0.00 0.00 0.00 3.32
2331 4048 4.981674 CGTGATGTGGCAATTTTAGTTGTT 59.018 37.500 0.00 0.00 0.00 2.83
2332 4049 6.146216 CGTGATGTGGCAATTTTAGTTGTTA 58.854 36.000 0.00 0.00 0.00 2.41
2333 4050 6.638873 CGTGATGTGGCAATTTTAGTTGTTAA 59.361 34.615 0.00 0.00 0.00 2.01
2334 4051 7.148983 CGTGATGTGGCAATTTTAGTTGTTAAG 60.149 37.037 0.00 0.00 0.00 1.85
2335 4052 7.865385 GTGATGTGGCAATTTTAGTTGTTAAGA 59.135 33.333 0.00 0.00 0.00 2.10
2336 4053 7.865385 TGATGTGGCAATTTTAGTTGTTAAGAC 59.135 33.333 0.00 0.00 0.00 3.01
2337 4054 7.101652 TGTGGCAATTTTAGTTGTTAAGACA 57.898 32.000 0.00 0.00 0.00 3.41
2338 4055 7.721402 TGTGGCAATTTTAGTTGTTAAGACAT 58.279 30.769 0.00 0.00 35.29 3.06
2339 4056 7.651304 TGTGGCAATTTTAGTTGTTAAGACATG 59.349 33.333 0.00 0.00 35.29 3.21
2340 4057 7.865385 GTGGCAATTTTAGTTGTTAAGACATGA 59.135 33.333 0.00 0.00 35.29 3.07
2341 4058 7.865385 TGGCAATTTTAGTTGTTAAGACATGAC 59.135 33.333 0.00 0.00 35.29 3.06
2342 4059 7.865385 GGCAATTTTAGTTGTTAAGACATGACA 59.135 33.333 0.00 0.00 35.29 3.58
2343 4060 9.243637 GCAATTTTAGTTGTTAAGACATGACAA 57.756 29.630 0.00 0.00 35.29 3.18
2349 4066 7.698836 AGTTGTTAAGACATGACAATTTTGC 57.301 32.000 0.00 0.00 35.91 3.68
2350 4067 6.701400 AGTTGTTAAGACATGACAATTTTGCC 59.299 34.615 0.00 0.00 35.91 4.52
2351 4068 5.537188 TGTTAAGACATGACAATTTTGCCC 58.463 37.500 0.00 0.00 0.00 5.36
2352 4069 3.683365 AAGACATGACAATTTTGCCCC 57.317 42.857 0.00 0.00 0.00 5.80
2353 4070 2.607499 AGACATGACAATTTTGCCCCA 58.393 42.857 0.00 0.00 0.00 4.96
2354 4071 2.564062 AGACATGACAATTTTGCCCCAG 59.436 45.455 0.00 0.00 0.00 4.45
2355 4072 2.299867 GACATGACAATTTTGCCCCAGT 59.700 45.455 0.00 0.00 0.00 4.00
2356 4073 2.705127 ACATGACAATTTTGCCCCAGTT 59.295 40.909 0.00 0.00 0.00 3.16
2357 4074 3.244181 ACATGACAATTTTGCCCCAGTTC 60.244 43.478 0.00 0.00 0.00 3.01
2358 4075 2.392662 TGACAATTTTGCCCCAGTTCA 58.607 42.857 0.00 0.00 0.00 3.18
2359 4076 2.971330 TGACAATTTTGCCCCAGTTCAT 59.029 40.909 0.00 0.00 0.00 2.57
2360 4077 3.390639 TGACAATTTTGCCCCAGTTCATT 59.609 39.130 0.00 0.00 0.00 2.57
2361 4078 4.141528 TGACAATTTTGCCCCAGTTCATTT 60.142 37.500 0.00 0.00 0.00 2.32
2362 4079 4.790937 ACAATTTTGCCCCAGTTCATTTT 58.209 34.783 0.00 0.00 0.00 1.82
2363 4080 5.199723 ACAATTTTGCCCCAGTTCATTTTT 58.800 33.333 0.00 0.00 0.00 1.94
2382 4099 3.724508 TTTGTCGGACAATTGCAATGT 57.275 38.095 22.97 12.97 38.00 2.71
2383 4100 3.724508 TTGTCGGACAATTGCAATGTT 57.275 38.095 19.07 2.34 32.34 2.71
2384 4101 3.724508 TGTCGGACAATTGCAATGTTT 57.275 38.095 13.82 0.00 0.00 2.83
2385 4102 3.379240 TGTCGGACAATTGCAATGTTTG 58.621 40.909 13.82 11.14 0.00 2.93
2386 4103 5.786617 TTGTCGGACAATTGCAATGTTTGC 61.787 41.667 19.07 4.75 44.19 3.68
2396 4113 2.886862 CAATGTTTGCCAACCTCACA 57.113 45.000 0.00 0.00 31.02 3.58
2397 4114 3.389925 CAATGTTTGCCAACCTCACAT 57.610 42.857 0.00 0.00 31.02 3.21
2398 4115 3.061322 CAATGTTTGCCAACCTCACATG 58.939 45.455 0.00 0.00 31.02 3.21
2399 4116 2.064434 TGTTTGCCAACCTCACATGA 57.936 45.000 0.00 0.00 31.02 3.07
2400 4117 2.382882 TGTTTGCCAACCTCACATGAA 58.617 42.857 0.00 0.00 31.02 2.57
2401 4118 2.100584 TGTTTGCCAACCTCACATGAAC 59.899 45.455 0.00 0.00 31.02 3.18
2402 4119 2.362077 GTTTGCCAACCTCACATGAACT 59.638 45.455 0.00 0.00 0.00 3.01
2403 4120 3.500448 TTGCCAACCTCACATGAACTA 57.500 42.857 0.00 0.00 0.00 2.24
2404 4121 3.500448 TGCCAACCTCACATGAACTAA 57.500 42.857 0.00 0.00 0.00 2.24
2405 4122 3.826524 TGCCAACCTCACATGAACTAAA 58.173 40.909 0.00 0.00 0.00 1.85
2406 4123 4.211125 TGCCAACCTCACATGAACTAAAA 58.789 39.130 0.00 0.00 0.00 1.52
2407 4124 4.832266 TGCCAACCTCACATGAACTAAAAT 59.168 37.500 0.00 0.00 0.00 1.82
2408 4125 5.304101 TGCCAACCTCACATGAACTAAAATT 59.696 36.000 0.00 0.00 0.00 1.82
2409 4126 5.634859 GCCAACCTCACATGAACTAAAATTG 59.365 40.000 0.00 0.00 0.00 2.32
2410 4127 5.634859 CCAACCTCACATGAACTAAAATTGC 59.365 40.000 0.00 0.00 0.00 3.56
2411 4128 6.215121 CAACCTCACATGAACTAAAATTGCA 58.785 36.000 0.00 0.00 0.00 4.08
2412 4129 6.403866 ACCTCACATGAACTAAAATTGCAA 57.596 33.333 0.00 0.00 0.00 4.08
2413 4130 6.996509 ACCTCACATGAACTAAAATTGCAAT 58.003 32.000 5.99 5.99 0.00 3.56
2414 4131 8.121305 ACCTCACATGAACTAAAATTGCAATA 57.879 30.769 13.39 0.00 0.00 1.90
2415 4132 8.584157 ACCTCACATGAACTAAAATTGCAATAA 58.416 29.630 13.39 0.56 0.00 1.40
2416 4133 9.421806 CCTCACATGAACTAAAATTGCAATAAA 57.578 29.630 13.39 0.19 0.00 1.40
2436 4153 2.939460 AAACATTCGGGTTGCTATGC 57.061 45.000 0.00 0.00 0.00 3.14
2437 4154 2.128771 AACATTCGGGTTGCTATGCT 57.871 45.000 0.00 0.00 0.00 3.79
2438 4155 2.128771 ACATTCGGGTTGCTATGCTT 57.871 45.000 0.00 0.00 0.00 3.91
2439 4156 3.275617 ACATTCGGGTTGCTATGCTTA 57.724 42.857 0.00 0.00 0.00 3.09
2440 4157 3.616219 ACATTCGGGTTGCTATGCTTAA 58.384 40.909 0.00 0.00 0.00 1.85
2441 4158 4.013728 ACATTCGGGTTGCTATGCTTAAA 58.986 39.130 0.00 0.00 0.00 1.52
2442 4159 4.461081 ACATTCGGGTTGCTATGCTTAAAA 59.539 37.500 0.00 0.00 0.00 1.52
2443 4160 5.127031 ACATTCGGGTTGCTATGCTTAAAAT 59.873 36.000 0.00 0.00 0.00 1.82
2444 4161 4.893424 TCGGGTTGCTATGCTTAAAATC 57.107 40.909 0.00 0.00 0.00 2.17
2445 4162 3.630312 TCGGGTTGCTATGCTTAAAATCC 59.370 43.478 0.00 0.00 0.00 3.01
2446 4163 3.548014 CGGGTTGCTATGCTTAAAATCCG 60.548 47.826 10.27 10.27 0.00 4.18
2447 4164 3.630312 GGGTTGCTATGCTTAAAATCCGA 59.370 43.478 0.00 0.00 0.00 4.55
2448 4165 4.097286 GGGTTGCTATGCTTAAAATCCGAA 59.903 41.667 0.00 0.00 0.00 4.30
2449 4166 5.034797 GGTTGCTATGCTTAAAATCCGAAC 58.965 41.667 0.00 0.00 0.00 3.95
2450 4167 4.530094 TGCTATGCTTAAAATCCGAACG 57.470 40.909 0.00 0.00 0.00 3.95
2451 4168 3.936453 TGCTATGCTTAAAATCCGAACGT 59.064 39.130 0.00 0.00 0.00 3.99
2452 4169 4.393680 TGCTATGCTTAAAATCCGAACGTT 59.606 37.500 0.00 0.00 0.00 3.99
2453 4170 4.962151 GCTATGCTTAAAATCCGAACGTTC 59.038 41.667 18.47 18.47 0.00 3.95
2466 4183 4.789095 CGAACGTTCGGGATTTATCATT 57.211 40.909 36.53 0.00 46.30 2.57
2467 4184 4.514506 CGAACGTTCGGGATTTATCATTG 58.485 43.478 36.53 8.97 46.30 2.82
2468 4185 3.963383 ACGTTCGGGATTTATCATTGC 57.037 42.857 0.00 0.00 0.00 3.56
2469 4186 2.616842 ACGTTCGGGATTTATCATTGCC 59.383 45.455 0.00 0.00 0.00 4.52
2470 4187 2.349438 CGTTCGGGATTTATCATTGCCG 60.349 50.000 0.00 0.00 31.82 5.69
2471 4188 2.616842 GTTCGGGATTTATCATTGCCGT 59.383 45.455 2.89 0.00 32.26 5.68
2472 4189 2.925724 TCGGGATTTATCATTGCCGTT 58.074 42.857 2.89 0.00 32.26 4.44
2473 4190 4.074627 TCGGGATTTATCATTGCCGTTA 57.925 40.909 2.89 0.00 32.26 3.18
2474 4191 4.452825 TCGGGATTTATCATTGCCGTTAA 58.547 39.130 2.89 0.00 32.26 2.01
2475 4192 5.067273 TCGGGATTTATCATTGCCGTTAAT 58.933 37.500 2.89 0.00 32.26 1.40
2476 4193 5.533154 TCGGGATTTATCATTGCCGTTAATT 59.467 36.000 2.89 0.00 32.26 1.40
2477 4194 6.039941 TCGGGATTTATCATTGCCGTTAATTT 59.960 34.615 2.89 0.00 32.26 1.82
2478 4195 7.228906 TCGGGATTTATCATTGCCGTTAATTTA 59.771 33.333 2.89 0.00 32.26 1.40
2479 4196 7.863375 CGGGATTTATCATTGCCGTTAATTTAA 59.137 33.333 0.00 0.00 0.00 1.52
2480 4197 9.705290 GGGATTTATCATTGCCGTTAATTTAAT 57.295 29.630 0.00 0.00 0.00 1.40
2512 4229 9.583765 GACTATTCTTCCTAGTCGTTACAATTT 57.416 33.333 0.00 0.00 36.71 1.82
2513 4230 9.367444 ACTATTCTTCCTAGTCGTTACAATTTG 57.633 33.333 0.00 0.00 0.00 2.32
2514 4231 6.476243 TTCTTCCTAGTCGTTACAATTTGC 57.524 37.500 0.00 0.00 0.00 3.68
2515 4232 5.790593 TCTTCCTAGTCGTTACAATTTGCT 58.209 37.500 0.00 0.00 0.00 3.91
2516 4233 6.927416 TCTTCCTAGTCGTTACAATTTGCTA 58.073 36.000 0.00 0.00 0.00 3.49
2517 4234 6.810182 TCTTCCTAGTCGTTACAATTTGCTAC 59.190 38.462 0.00 0.00 0.00 3.58
2518 4235 5.413499 TCCTAGTCGTTACAATTTGCTACC 58.587 41.667 0.00 0.00 0.00 3.18
2519 4236 5.186409 TCCTAGTCGTTACAATTTGCTACCT 59.814 40.000 0.00 0.00 0.00 3.08
2520 4237 5.519206 CCTAGTCGTTACAATTTGCTACCTC 59.481 44.000 0.00 0.00 0.00 3.85
2521 4238 5.148651 AGTCGTTACAATTTGCTACCTCT 57.851 39.130 0.00 0.00 0.00 3.69
2651 4376 0.033504 CGCGGCATATAGAGTTGGGT 59.966 55.000 0.00 0.00 0.00 4.51
2700 4425 1.974343 TATTTGGTGCGCCCGCTTT 60.974 52.632 15.15 0.00 42.51 3.51
2724 4449 4.299547 TGGCACACTCGAGCGCTT 62.300 61.111 13.26 0.00 0.00 4.68
2881 4622 0.821711 CACGGGGAGTTTTGGCTTCA 60.822 55.000 0.00 0.00 0.00 3.02
2884 4625 1.185618 GGGGAGTTTTGGCTTCACCC 61.186 60.000 0.00 0.00 37.83 4.61
3084 4833 2.351276 GGCTCCGGCTCCTCAAAA 59.649 61.111 0.00 0.00 38.73 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.163613 GGGCTATGTTTGTGTAAGGTGC 59.836 50.000 0.00 0.00 0.00 5.01
57 58 0.482446 TGTCTTGGGATGGGCAAGTT 59.518 50.000 0.00 0.00 0.00 2.66
96 97 1.515088 CGGAGCAGTACTGTCGCAG 60.515 63.158 23.44 13.91 37.52 5.18
97 98 1.969589 TCGGAGCAGTACTGTCGCA 60.970 57.895 23.44 11.96 0.00 5.10
104 105 4.373348 AAGTATGAAGTCGGAGCAGTAC 57.627 45.455 0.00 0.00 0.00 2.73
126 127 1.135094 TTTGGCATGCCCCTCAAAAA 58.865 45.000 33.44 21.96 34.56 1.94
127 128 0.396060 GTTTGGCATGCCCCTCAAAA 59.604 50.000 33.44 22.68 32.01 2.44
128 129 1.814772 CGTTTGGCATGCCCCTCAAA 61.815 55.000 33.44 23.04 34.56 2.69
129 130 2.274645 CGTTTGGCATGCCCCTCAA 61.275 57.895 33.44 18.39 34.56 3.02
130 131 2.676121 CGTTTGGCATGCCCCTCA 60.676 61.111 33.44 12.76 34.56 3.86
131 132 3.451894 CCGTTTGGCATGCCCCTC 61.452 66.667 33.44 20.66 34.56 4.30
134 135 2.569354 TTGACCGTTTGGCATGCCC 61.569 57.895 33.44 17.44 39.70 5.36
167 168 0.792640 CAAGACAGACATGGTCGTGC 59.207 55.000 0.00 0.00 37.79 5.34
179 180 1.100510 CCATGATGGTGGCAAGACAG 58.899 55.000 2.54 0.00 31.35 3.51
223 224 5.813672 GGGCATTTCTACAACGTGTCTTATA 59.186 40.000 0.00 0.00 0.00 0.98
224 225 4.634443 GGGCATTTCTACAACGTGTCTTAT 59.366 41.667 0.00 0.00 0.00 1.73
258 727 6.373216 ACGCTTAATTAAGTTATGGCAGTCAA 59.627 34.615 22.94 0.00 35.75 3.18
264 733 6.277918 ACGTACGCTTAATTAAGTTATGGC 57.722 37.500 22.94 10.14 35.75 4.40
265 734 8.338985 TGTACGTACGCTTAATTAAGTTATGG 57.661 34.615 22.94 13.82 35.75 2.74
455 998 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
456 999 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
459 1002 5.849510 TCAAGACACTTATTTTGAGACGGA 58.150 37.500 0.00 0.00 0.00 4.69
461 1004 5.406780 AGCTCAAGACACTTATTTTGAGACG 59.593 40.000 15.10 0.00 45.82 4.18
462 1005 6.793492 AGCTCAAGACACTTATTTTGAGAC 57.207 37.500 15.10 7.85 45.82 3.36
463 1006 8.150945 ACTAAGCTCAAGACACTTATTTTGAGA 58.849 33.333 15.10 0.00 45.82 3.27
464 1007 8.316640 ACTAAGCTCAAGACACTTATTTTGAG 57.683 34.615 8.33 8.33 45.75 3.02
465 1008 9.204570 GTACTAAGCTCAAGACACTTATTTTGA 57.795 33.333 3.19 0.00 0.00 2.69
468 1011 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
469 1012 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
470 1013 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
471 1014 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
473 1016 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
474 1017 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
500 1043 9.694137 GTGTCTCAACTTTGTACTAACTCTAAT 57.306 33.333 0.00 0.00 0.00 1.73
501 1044 8.910944 AGTGTCTCAACTTTGTACTAACTCTAA 58.089 33.333 0.00 0.00 0.00 2.10
502 1045 8.461249 AGTGTCTCAACTTTGTACTAACTCTA 57.539 34.615 0.00 0.00 0.00 2.43
503 1046 7.349412 AGTGTCTCAACTTTGTACTAACTCT 57.651 36.000 0.00 0.00 0.00 3.24
504 1047 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
509 1052 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
510 1053 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
511 1054 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
512 1055 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
513 1056 8.405531 TCTTCCAAAATAAGTGTCTCAACTTTG 58.594 33.333 0.00 0.00 40.77 2.77
514 1057 8.519799 TCTTCCAAAATAAGTGTCTCAACTTT 57.480 30.769 0.00 0.00 40.77 2.66
515 1058 8.571336 CATCTTCCAAAATAAGTGTCTCAACTT 58.429 33.333 0.00 0.00 42.89 2.66
516 1059 7.175641 CCATCTTCCAAAATAAGTGTCTCAACT 59.824 37.037 0.00 0.00 0.00 3.16
517 1060 7.174946 TCCATCTTCCAAAATAAGTGTCTCAAC 59.825 37.037 0.00 0.00 0.00 3.18
518 1061 7.174946 GTCCATCTTCCAAAATAAGTGTCTCAA 59.825 37.037 0.00 0.00 0.00 3.02
519 1062 6.655003 GTCCATCTTCCAAAATAAGTGTCTCA 59.345 38.462 0.00 0.00 0.00 3.27
520 1063 6.183360 CGTCCATCTTCCAAAATAAGTGTCTC 60.183 42.308 0.00 0.00 0.00 3.36
521 1064 5.643777 CGTCCATCTTCCAAAATAAGTGTCT 59.356 40.000 0.00 0.00 0.00 3.41
522 1065 5.163754 CCGTCCATCTTCCAAAATAAGTGTC 60.164 44.000 0.00 0.00 0.00 3.67
523 1066 4.700213 CCGTCCATCTTCCAAAATAAGTGT 59.300 41.667 0.00 0.00 0.00 3.55
524 1067 4.941263 TCCGTCCATCTTCCAAAATAAGTG 59.059 41.667 0.00 0.00 0.00 3.16
525 1068 4.941873 GTCCGTCCATCTTCCAAAATAAGT 59.058 41.667 0.00 0.00 0.00 2.24
526 1069 4.941263 TGTCCGTCCATCTTCCAAAATAAG 59.059 41.667 0.00 0.00 0.00 1.73
527 1070 4.912586 TGTCCGTCCATCTTCCAAAATAA 58.087 39.130 0.00 0.00 0.00 1.40
528 1071 4.513442 CTGTCCGTCCATCTTCCAAAATA 58.487 43.478 0.00 0.00 0.00 1.40
529 1072 3.347216 CTGTCCGTCCATCTTCCAAAAT 58.653 45.455 0.00 0.00 0.00 1.82
530 1073 2.552155 CCTGTCCGTCCATCTTCCAAAA 60.552 50.000 0.00 0.00 0.00 2.44
531 1074 1.003118 CCTGTCCGTCCATCTTCCAAA 59.997 52.381 0.00 0.00 0.00 3.28
532 1075 0.613260 CCTGTCCGTCCATCTTCCAA 59.387 55.000 0.00 0.00 0.00 3.53
533 1076 0.252057 TCCTGTCCGTCCATCTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
534 1077 0.461961 CTCCTGTCCGTCCATCTTCC 59.538 60.000 0.00 0.00 0.00 3.46
535 1078 1.187087 ACTCCTGTCCGTCCATCTTC 58.813 55.000 0.00 0.00 0.00 2.87
536 1079 2.100989 GTACTCCTGTCCGTCCATCTT 58.899 52.381 0.00 0.00 0.00 2.40
545 1088 1.201880 GTCCACTTCGTACTCCTGTCC 59.798 57.143 0.00 0.00 0.00 4.02
622 1171 3.192001 ACTGCATGCAAGTGTATTGGAAG 59.808 43.478 22.88 7.50 0.00 3.46
651 1200 9.322773 TGAATGCACAAAAATAAAATCTCACAA 57.677 25.926 0.00 0.00 0.00 3.33
652 1201 8.883954 TGAATGCACAAAAATAAAATCTCACA 57.116 26.923 0.00 0.00 0.00 3.58
653 1202 8.981647 ACTGAATGCACAAAAATAAAATCTCAC 58.018 29.630 0.00 0.00 0.00 3.51
656 1208 9.545105 TTCACTGAATGCACAAAAATAAAATCT 57.455 25.926 0.00 0.00 0.00 2.40
660 1212 8.939201 TCTTTCACTGAATGCACAAAAATAAA 57.061 26.923 0.00 0.00 0.00 1.40
663 1215 8.441312 AAATCTTTCACTGAATGCACAAAAAT 57.559 26.923 0.00 0.00 0.00 1.82
674 1226 9.921637 AAAGTACAACAAAAATCTTTCACTGAA 57.078 25.926 0.00 0.00 0.00 3.02
751 1488 6.757897 ACATTATCAGCCGAATTCTCAAAA 57.242 33.333 3.52 0.00 0.00 2.44
752 1489 7.224753 GTCTACATTATCAGCCGAATTCTCAAA 59.775 37.037 3.52 0.00 0.00 2.69
753 1490 6.701841 GTCTACATTATCAGCCGAATTCTCAA 59.298 38.462 3.52 0.00 0.00 3.02
754 1491 6.040955 AGTCTACATTATCAGCCGAATTCTCA 59.959 38.462 3.52 0.00 0.00 3.27
755 1492 6.451393 AGTCTACATTATCAGCCGAATTCTC 58.549 40.000 3.52 0.00 0.00 2.87
756 1493 6.412362 AGTCTACATTATCAGCCGAATTCT 57.588 37.500 3.52 0.00 0.00 2.40
757 1494 7.145985 TGTAGTCTACATTATCAGCCGAATTC 58.854 38.462 8.70 0.00 32.89 2.17
758 1495 7.050970 TGTAGTCTACATTATCAGCCGAATT 57.949 36.000 8.70 0.00 32.89 2.17
759 1496 6.650427 TGTAGTCTACATTATCAGCCGAAT 57.350 37.500 8.70 0.00 32.89 3.34
760 1497 6.650427 ATGTAGTCTACATTATCAGCCGAA 57.350 37.500 18.13 0.00 46.69 4.30
791 1528 5.648960 TCAGCATGCATTTCTTCACTAATCA 59.351 36.000 21.98 0.00 34.76 2.57
794 1531 5.005740 ACTCAGCATGCATTTCTTCACTAA 58.994 37.500 21.98 0.00 34.76 2.24
799 1846 2.159282 CCCACTCAGCATGCATTTCTTC 60.159 50.000 21.98 0.00 34.76 2.87
805 1852 2.441532 GGCCCACTCAGCATGCAT 60.442 61.111 21.98 1.69 34.76 3.96
836 1884 9.423061 GAGGAAAAGCATACACAAAAATAATGT 57.577 29.630 0.00 0.00 0.00 2.71
841 1889 6.670695 AGGAGGAAAAGCATACACAAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
855 2445 3.482436 ACGTTGCACAATAGGAGGAAAA 58.518 40.909 0.00 0.00 0.00 2.29
856 2446 3.134574 ACGTTGCACAATAGGAGGAAA 57.865 42.857 0.00 0.00 0.00 3.13
880 2485 1.674817 GGACGGTGGATTGTTCACGAT 60.675 52.381 0.00 0.00 36.09 3.73
903 2508 4.173256 CGGCAATTGAAAAATGGTAGGAC 58.827 43.478 10.34 0.00 0.00 3.85
1004 2623 5.278169 GCAGAGAGAAGCAATGAAGAAACAA 60.278 40.000 0.00 0.00 0.00 2.83
1005 2624 4.214971 GCAGAGAGAAGCAATGAAGAAACA 59.785 41.667 0.00 0.00 0.00 2.83
1006 2625 4.214971 TGCAGAGAGAAGCAATGAAGAAAC 59.785 41.667 0.00 0.00 37.90 2.78
1007 2626 4.214971 GTGCAGAGAGAAGCAATGAAGAAA 59.785 41.667 0.00 0.00 43.20 2.52
1008 2627 3.750130 GTGCAGAGAGAAGCAATGAAGAA 59.250 43.478 0.00 0.00 43.20 2.52
1009 2628 3.332919 GTGCAGAGAGAAGCAATGAAGA 58.667 45.455 0.00 0.00 43.20 2.87
1010 2629 2.093941 CGTGCAGAGAGAAGCAATGAAG 59.906 50.000 0.00 0.00 43.20 3.02
1011 2630 2.071540 CGTGCAGAGAGAAGCAATGAA 58.928 47.619 0.00 0.00 43.20 2.57
1012 2631 1.718396 CGTGCAGAGAGAAGCAATGA 58.282 50.000 0.00 0.00 43.20 2.57
1013 2632 0.096628 GCGTGCAGAGAGAAGCAATG 59.903 55.000 0.00 0.00 43.20 2.82
1014 2633 0.036577 AGCGTGCAGAGAGAAGCAAT 60.037 50.000 0.00 0.00 43.20 3.56
1046 2665 4.659874 CAAACCGTGCGTCCGTGC 62.660 66.667 0.00 0.00 0.00 5.34
1047 2666 4.007940 CCAAACCGTGCGTCCGTG 62.008 66.667 0.00 0.00 0.00 4.94
1050 2669 3.351416 GACCCAAACCGTGCGTCC 61.351 66.667 0.00 0.00 30.04 4.79
1051 2670 2.280592 AGACCCAAACCGTGCGTC 60.281 61.111 0.00 0.00 35.58 5.19
1095 2716 3.779759 TGTGTGCACTTTTGAATGAACC 58.220 40.909 19.41 0.00 0.00 3.62
1096 2717 5.519566 TCAATGTGTGCACTTTTGAATGAAC 59.480 36.000 19.41 4.01 34.06 3.18
1102 2739 5.067544 TGAAGATCAATGTGTGCACTTTTGA 59.932 36.000 22.67 22.67 37.98 2.69
1105 2742 5.717078 ATGAAGATCAATGTGTGCACTTT 57.283 34.783 19.41 6.42 0.00 2.66
1132 2781 2.032799 TGACAAATTGTGACCGCAGTTC 59.967 45.455 2.20 0.00 0.00 3.01
1142 2796 3.004734 GTGGGAGAAGGTGACAAATTGTG 59.995 47.826 2.20 0.00 0.00 3.33
1151 2805 0.541063 TACGCTGTGGGAGAAGGTGA 60.541 55.000 0.00 0.00 0.00 4.02
1155 2809 2.163818 TTTGTACGCTGTGGGAGAAG 57.836 50.000 0.00 0.00 0.00 2.85
1160 2814 1.808411 ACAGATTTGTACGCTGTGGG 58.192 50.000 8.94 0.00 41.02 4.61
1162 2816 3.427528 ACGTTACAGATTTGTACGCTGTG 59.572 43.478 16.07 3.65 42.38 3.66
1163 2817 3.427528 CACGTTACAGATTTGTACGCTGT 59.572 43.478 14.03 12.84 44.38 4.40
1164 2818 3.181534 CCACGTTACAGATTTGTACGCTG 60.182 47.826 14.03 11.88 39.44 5.18
1166 2820 2.093152 CCCACGTTACAGATTTGTACGC 59.907 50.000 14.03 3.83 39.44 4.42
1177 2831 2.109774 CCCCATAGTACCCACGTTACA 58.890 52.381 0.00 0.00 0.00 2.41
1185 2839 4.738381 AGTAGTAGACCCCATAGTACCC 57.262 50.000 0.00 0.00 31.93 3.69
1186 2840 5.301298 CACAAGTAGTAGACCCCATAGTACC 59.699 48.000 0.00 0.00 31.93 3.34
1188 2842 4.891756 GCACAAGTAGTAGACCCCATAGTA 59.108 45.833 0.00 0.00 0.00 1.82
1189 2843 3.705072 GCACAAGTAGTAGACCCCATAGT 59.295 47.826 0.00 0.00 0.00 2.12
1190 2844 3.704566 TGCACAAGTAGTAGACCCCATAG 59.295 47.826 0.00 0.00 0.00 2.23
1191 2845 3.704566 CTGCACAAGTAGTAGACCCCATA 59.295 47.826 0.00 0.00 0.00 2.74
1192 2846 2.501723 CTGCACAAGTAGTAGACCCCAT 59.498 50.000 0.00 0.00 0.00 4.00
1193 2847 1.899814 CTGCACAAGTAGTAGACCCCA 59.100 52.381 0.00 0.00 0.00 4.96
1194 2848 1.207329 CCTGCACAAGTAGTAGACCCC 59.793 57.143 0.00 0.00 0.00 4.95
1195 2849 2.166664 CTCCTGCACAAGTAGTAGACCC 59.833 54.545 0.00 0.00 0.00 4.46
1196 2850 2.417515 GCTCCTGCACAAGTAGTAGACC 60.418 54.545 0.00 0.00 39.41 3.85
1197 2851 2.732597 CGCTCCTGCACAAGTAGTAGAC 60.733 54.545 0.00 0.00 39.64 2.59
1198 2852 1.472878 CGCTCCTGCACAAGTAGTAGA 59.527 52.381 0.00 0.00 39.64 2.59
1656 3311 4.373116 GGCTTGGACTCGTCGGCA 62.373 66.667 0.00 0.00 0.00 5.69
1815 3470 2.675423 TACTCGCCGTCCTGCACT 60.675 61.111 0.00 0.00 0.00 4.40
2158 3857 2.464865 ACGCGTGATCTCAATAAGAGC 58.535 47.619 12.93 0.00 44.35 4.09
2161 3860 2.451132 ACGACGCGTGATCTCAATAAG 58.549 47.619 20.70 0.00 39.18 1.73
2162 3861 2.447250 GACGACGCGTGATCTCAATAA 58.553 47.619 20.70 0.00 41.37 1.40
2170 3872 2.016393 ATGGATGGACGACGCGTGAT 62.016 55.000 20.70 3.22 41.37 3.06
2174 3880 1.065109 TACATGGATGGACGACGCG 59.935 57.895 3.53 3.53 0.00 6.01
2273 3990 2.548904 TCATGTAAAAACGTTCGGGGTG 59.451 45.455 0.00 0.00 0.00 4.61
2274 3991 2.549329 GTCATGTAAAAACGTTCGGGGT 59.451 45.455 0.00 0.00 0.00 4.95
2275 3992 2.548904 TGTCATGTAAAAACGTTCGGGG 59.451 45.455 0.00 0.00 0.00 5.73
2276 3993 3.881780 TGTCATGTAAAAACGTTCGGG 57.118 42.857 0.00 0.00 0.00 5.14
2277 3994 4.839796 AGTTGTCATGTAAAAACGTTCGG 58.160 39.130 0.00 0.00 0.00 4.30
2278 3995 6.784068 AAAGTTGTCATGTAAAAACGTTCG 57.216 33.333 0.00 0.00 0.00 3.95
2279 3996 8.831000 ACTAAAGTTGTCATGTAAAAACGTTC 57.169 30.769 0.00 0.00 0.00 3.95
2296 4013 3.250040 GCCACATCACGTCAACTAAAGTT 59.750 43.478 0.00 0.00 39.12 2.66
2297 4014 2.806244 GCCACATCACGTCAACTAAAGT 59.194 45.455 0.00 0.00 0.00 2.66
2298 4015 2.805671 TGCCACATCACGTCAACTAAAG 59.194 45.455 0.00 0.00 0.00 1.85
2299 4016 2.839975 TGCCACATCACGTCAACTAAA 58.160 42.857 0.00 0.00 0.00 1.85
2300 4017 2.535012 TGCCACATCACGTCAACTAA 57.465 45.000 0.00 0.00 0.00 2.24
2301 4018 2.535012 TTGCCACATCACGTCAACTA 57.465 45.000 0.00 0.00 0.00 2.24
2302 4019 1.896220 ATTGCCACATCACGTCAACT 58.104 45.000 0.00 0.00 0.00 3.16
2303 4020 2.704725 AATTGCCACATCACGTCAAC 57.295 45.000 0.00 0.00 0.00 3.18
2304 4021 3.724508 AAAATTGCCACATCACGTCAA 57.275 38.095 0.00 0.00 0.00 3.18
2305 4022 3.818210 ACTAAAATTGCCACATCACGTCA 59.182 39.130 0.00 0.00 0.00 4.35
2306 4023 4.419522 ACTAAAATTGCCACATCACGTC 57.580 40.909 0.00 0.00 0.00 4.34
2307 4024 4.037446 ACAACTAAAATTGCCACATCACGT 59.963 37.500 0.00 0.00 32.47 4.49
2308 4025 4.545610 ACAACTAAAATTGCCACATCACG 58.454 39.130 0.00 0.00 32.47 4.35
2309 4026 7.865385 TCTTAACAACTAAAATTGCCACATCAC 59.135 33.333 0.00 0.00 32.47 3.06
2310 4027 7.865385 GTCTTAACAACTAAAATTGCCACATCA 59.135 33.333 0.00 0.00 32.47 3.07
2311 4028 7.865385 TGTCTTAACAACTAAAATTGCCACATC 59.135 33.333 0.00 0.00 32.47 3.06
2312 4029 7.721402 TGTCTTAACAACTAAAATTGCCACAT 58.279 30.769 0.00 0.00 32.47 3.21
2313 4030 7.101652 TGTCTTAACAACTAAAATTGCCACA 57.898 32.000 0.00 0.00 32.47 4.17
2314 4031 7.865385 TCATGTCTTAACAACTAAAATTGCCAC 59.135 33.333 0.00 0.00 39.30 5.01
2315 4032 7.865385 GTCATGTCTTAACAACTAAAATTGCCA 59.135 33.333 0.00 0.00 39.30 4.92
2316 4033 7.865385 TGTCATGTCTTAACAACTAAAATTGCC 59.135 33.333 0.00 0.00 39.30 4.52
2317 4034 8.795786 TGTCATGTCTTAACAACTAAAATTGC 57.204 30.769 0.00 0.00 39.30 3.56
2323 4040 9.243637 GCAAAATTGTCATGTCTTAACAACTAA 57.756 29.630 0.00 0.00 39.30 2.24
2324 4041 7.865385 GGCAAAATTGTCATGTCTTAACAACTA 59.135 33.333 0.00 0.00 39.30 2.24
2325 4042 6.701400 GGCAAAATTGTCATGTCTTAACAACT 59.299 34.615 0.00 0.00 39.30 3.16
2326 4043 6.073819 GGGCAAAATTGTCATGTCTTAACAAC 60.074 38.462 0.00 0.00 39.30 3.32
2327 4044 5.988561 GGGCAAAATTGTCATGTCTTAACAA 59.011 36.000 0.00 0.00 39.30 2.83
2328 4045 5.510520 GGGGCAAAATTGTCATGTCTTAACA 60.511 40.000 0.00 0.00 40.38 2.41
2329 4046 4.929211 GGGGCAAAATTGTCATGTCTTAAC 59.071 41.667 0.00 0.00 33.59 2.01
2330 4047 4.590647 TGGGGCAAAATTGTCATGTCTTAA 59.409 37.500 0.00 0.00 33.59 1.85
2331 4048 4.155709 TGGGGCAAAATTGTCATGTCTTA 58.844 39.130 0.00 0.00 33.59 2.10
2332 4049 2.971330 TGGGGCAAAATTGTCATGTCTT 59.029 40.909 0.00 0.00 33.59 3.01
2333 4050 2.564062 CTGGGGCAAAATTGTCATGTCT 59.436 45.455 0.00 0.00 33.59 3.41
2334 4051 2.299867 ACTGGGGCAAAATTGTCATGTC 59.700 45.455 0.00 0.00 33.59 3.06
2335 4052 2.328319 ACTGGGGCAAAATTGTCATGT 58.672 42.857 0.00 0.00 33.59 3.21
2336 4053 3.244146 TGAACTGGGGCAAAATTGTCATG 60.244 43.478 0.00 0.00 33.59 3.07
2337 4054 2.971330 TGAACTGGGGCAAAATTGTCAT 59.029 40.909 0.00 0.00 33.59 3.06
2338 4055 2.392662 TGAACTGGGGCAAAATTGTCA 58.607 42.857 0.00 0.00 33.59 3.58
2339 4056 3.683365 ATGAACTGGGGCAAAATTGTC 57.317 42.857 0.00 0.00 0.00 3.18
2340 4057 4.436113 AAATGAACTGGGGCAAAATTGT 57.564 36.364 0.00 0.00 0.00 2.71
2341 4058 5.771153 AAAAATGAACTGGGGCAAAATTG 57.229 34.783 0.00 0.00 0.00 2.32
2360 4077 4.437239 ACATTGCAATTGTCCGACAAAAA 58.563 34.783 17.64 10.32 41.96 1.94
2361 4078 4.052159 ACATTGCAATTGTCCGACAAAA 57.948 36.364 17.64 8.13 41.96 2.44
2362 4079 3.724508 ACATTGCAATTGTCCGACAAA 57.275 38.095 17.64 1.66 41.96 2.83
2363 4080 3.724508 AACATTGCAATTGTCCGACAA 57.275 38.095 16.15 16.15 42.95 3.18
2364 4081 3.379240 CAAACATTGCAATTGTCCGACA 58.621 40.909 9.83 0.00 0.00 4.35
2377 4094 2.886862 TGTGAGGTTGGCAAACATTG 57.113 45.000 18.93 0.00 38.10 2.82
2378 4095 2.964464 TCATGTGAGGTTGGCAAACATT 59.036 40.909 18.93 0.00 38.10 2.71
2379 4096 2.596346 TCATGTGAGGTTGGCAAACAT 58.404 42.857 18.93 13.33 38.10 2.71
2380 4097 2.064434 TCATGTGAGGTTGGCAAACA 57.936 45.000 18.93 11.46 38.10 2.83
2381 4098 2.362077 AGTTCATGTGAGGTTGGCAAAC 59.638 45.455 7.31 7.31 35.40 2.93
2382 4099 2.665165 AGTTCATGTGAGGTTGGCAAA 58.335 42.857 0.00 0.00 0.00 3.68
2383 4100 2.363306 AGTTCATGTGAGGTTGGCAA 57.637 45.000 0.00 0.00 0.00 4.52
2384 4101 3.500448 TTAGTTCATGTGAGGTTGGCA 57.500 42.857 0.00 0.00 0.00 4.92
2385 4102 4.846779 TTTTAGTTCATGTGAGGTTGGC 57.153 40.909 0.00 0.00 0.00 4.52
2386 4103 5.634859 GCAATTTTAGTTCATGTGAGGTTGG 59.365 40.000 0.00 0.00 0.00 3.77
2387 4104 6.215121 TGCAATTTTAGTTCATGTGAGGTTG 58.785 36.000 0.00 0.00 0.00 3.77
2388 4105 6.403866 TGCAATTTTAGTTCATGTGAGGTT 57.596 33.333 0.00 0.00 0.00 3.50
2389 4106 6.403866 TTGCAATTTTAGTTCATGTGAGGT 57.596 33.333 0.00 0.00 0.00 3.85
2390 4107 8.984891 TTATTGCAATTTTAGTTCATGTGAGG 57.015 30.769 18.75 0.00 0.00 3.86
2415 4132 3.258123 AGCATAGCAACCCGAATGTTTTT 59.742 39.130 0.00 0.00 0.00 1.94
2416 4133 2.825532 AGCATAGCAACCCGAATGTTTT 59.174 40.909 0.00 0.00 0.00 2.43
2417 4134 2.446435 AGCATAGCAACCCGAATGTTT 58.554 42.857 0.00 0.00 0.00 2.83
2418 4135 2.128771 AGCATAGCAACCCGAATGTT 57.871 45.000 0.00 0.00 0.00 2.71
2419 4136 2.128771 AAGCATAGCAACCCGAATGT 57.871 45.000 0.00 0.00 0.00 2.71
2420 4137 4.630894 TTTAAGCATAGCAACCCGAATG 57.369 40.909 0.00 0.00 0.00 2.67
2421 4138 5.221244 GGATTTTAAGCATAGCAACCCGAAT 60.221 40.000 0.00 0.00 0.00 3.34
2422 4139 4.097286 GGATTTTAAGCATAGCAACCCGAA 59.903 41.667 0.00 0.00 0.00 4.30
2423 4140 3.630312 GGATTTTAAGCATAGCAACCCGA 59.370 43.478 0.00 0.00 0.00 5.14
2424 4141 3.548014 CGGATTTTAAGCATAGCAACCCG 60.548 47.826 0.00 0.00 0.00 5.28
2425 4142 3.630312 TCGGATTTTAAGCATAGCAACCC 59.370 43.478 0.00 0.00 0.00 4.11
2426 4143 4.893424 TCGGATTTTAAGCATAGCAACC 57.107 40.909 0.00 0.00 0.00 3.77
2427 4144 4.728608 CGTTCGGATTTTAAGCATAGCAAC 59.271 41.667 0.00 0.00 0.00 4.17
2428 4145 4.393680 ACGTTCGGATTTTAAGCATAGCAA 59.606 37.500 0.00 0.00 0.00 3.91
2429 4146 3.936453 ACGTTCGGATTTTAAGCATAGCA 59.064 39.130 0.00 0.00 0.00 3.49
2430 4147 4.531659 ACGTTCGGATTTTAAGCATAGC 57.468 40.909 0.00 0.00 0.00 2.97
2431 4148 5.188194 CGAACGTTCGGATTTTAAGCATAG 58.812 41.667 36.53 8.35 46.30 2.23
2432 4149 5.133707 CGAACGTTCGGATTTTAAGCATA 57.866 39.130 36.53 0.00 46.30 3.14
2433 4150 3.998522 CGAACGTTCGGATTTTAAGCAT 58.001 40.909 36.53 0.00 46.30 3.79
2434 4151 3.443054 CGAACGTTCGGATTTTAAGCA 57.557 42.857 36.53 0.00 46.30 3.91
2446 4163 4.279659 GCAATGATAAATCCCGAACGTTC 58.720 43.478 18.47 18.47 0.00 3.95
2447 4164 3.066203 GGCAATGATAAATCCCGAACGTT 59.934 43.478 0.00 0.00 0.00 3.99
2448 4165 2.616842 GGCAATGATAAATCCCGAACGT 59.383 45.455 0.00 0.00 0.00 3.99
2449 4166 2.349438 CGGCAATGATAAATCCCGAACG 60.349 50.000 0.00 0.00 38.04 3.95
2450 4167 2.616842 ACGGCAATGATAAATCCCGAAC 59.383 45.455 10.93 0.00 39.04 3.95
2451 4168 2.925724 ACGGCAATGATAAATCCCGAA 58.074 42.857 10.93 0.00 39.04 4.30
2452 4169 2.631160 ACGGCAATGATAAATCCCGA 57.369 45.000 10.93 0.00 39.04 5.14
2453 4170 4.822036 TTAACGGCAATGATAAATCCCG 57.178 40.909 0.00 0.00 41.31 5.14
2454 4171 9.705290 ATTAAATTAACGGCAATGATAAATCCC 57.295 29.630 0.00 0.00 0.00 3.85
2486 4203 9.583765 AAATTGTAACGACTAGGAAGAATAGTC 57.416 33.333 0.00 3.55 43.72 2.59
2487 4204 9.367444 CAAATTGTAACGACTAGGAAGAATAGT 57.633 33.333 0.00 0.00 36.19 2.12
2488 4205 8.328864 GCAAATTGTAACGACTAGGAAGAATAG 58.671 37.037 0.00 0.00 0.00 1.73
2489 4206 8.038944 AGCAAATTGTAACGACTAGGAAGAATA 58.961 33.333 0.00 0.00 0.00 1.75
2490 4207 6.879458 AGCAAATTGTAACGACTAGGAAGAAT 59.121 34.615 0.00 0.00 0.00 2.40
2491 4208 6.228258 AGCAAATTGTAACGACTAGGAAGAA 58.772 36.000 0.00 0.00 0.00 2.52
2492 4209 5.790593 AGCAAATTGTAACGACTAGGAAGA 58.209 37.500 0.00 0.00 0.00 2.87
2493 4210 6.035758 GGTAGCAAATTGTAACGACTAGGAAG 59.964 42.308 0.00 0.00 0.00 3.46
2494 4211 5.870978 GGTAGCAAATTGTAACGACTAGGAA 59.129 40.000 0.00 0.00 0.00 3.36
2495 4212 5.186409 AGGTAGCAAATTGTAACGACTAGGA 59.814 40.000 0.00 0.00 0.00 2.94
2496 4213 5.416947 AGGTAGCAAATTGTAACGACTAGG 58.583 41.667 0.00 0.00 0.00 3.02
2497 4214 6.331061 AGAGGTAGCAAATTGTAACGACTAG 58.669 40.000 0.00 0.00 0.00 2.57
2498 4215 6.276832 AGAGGTAGCAAATTGTAACGACTA 57.723 37.500 0.00 0.00 0.00 2.59
2499 4216 5.148651 AGAGGTAGCAAATTGTAACGACT 57.851 39.130 0.00 0.00 0.00 4.18
2500 4217 6.755141 TCATAGAGGTAGCAAATTGTAACGAC 59.245 38.462 0.00 0.00 0.00 4.34
2501 4218 6.869695 TCATAGAGGTAGCAAATTGTAACGA 58.130 36.000 0.00 0.00 0.00 3.85
2502 4219 6.978659 TCTCATAGAGGTAGCAAATTGTAACG 59.021 38.462 0.00 0.00 0.00 3.18
2503 4220 7.042389 GCTCTCATAGAGGTAGCAAATTGTAAC 60.042 40.741 6.10 0.00 42.54 2.50
2504 4221 6.986817 GCTCTCATAGAGGTAGCAAATTGTAA 59.013 38.462 6.10 0.00 42.54 2.41
2505 4222 6.098266 TGCTCTCATAGAGGTAGCAAATTGTA 59.902 38.462 7.65 0.00 42.54 2.41
2506 4223 5.104776 TGCTCTCATAGAGGTAGCAAATTGT 60.105 40.000 7.65 0.00 42.54 2.71
2507 4224 5.363101 TGCTCTCATAGAGGTAGCAAATTG 58.637 41.667 7.65 0.00 42.54 2.32
2508 4225 5.620738 TGCTCTCATAGAGGTAGCAAATT 57.379 39.130 7.65 0.00 42.54 1.82
2509 4226 5.543405 AGATGCTCTCATAGAGGTAGCAAAT 59.457 40.000 12.48 4.31 40.88 2.32
2510 4227 4.898265 AGATGCTCTCATAGAGGTAGCAAA 59.102 41.667 12.48 0.00 40.88 3.68
2511 4228 4.478203 AGATGCTCTCATAGAGGTAGCAA 58.522 43.478 12.48 0.72 40.88 3.91
2512 4229 4.078537 GAGATGCTCTCATAGAGGTAGCA 58.921 47.826 11.30 11.30 42.90 3.49
2513 4230 3.443681 GGAGATGCTCTCATAGAGGTAGC 59.556 52.174 13.06 1.91 45.12 3.58
2514 4231 4.661222 TGGAGATGCTCTCATAGAGGTAG 58.339 47.826 13.06 0.00 45.12 3.18
2515 4232 4.731313 TGGAGATGCTCTCATAGAGGTA 57.269 45.455 13.06 0.00 45.12 3.08
2516 4233 3.609256 TGGAGATGCTCTCATAGAGGT 57.391 47.619 13.06 0.00 45.12 3.85
2517 4234 3.006752 GGTTGGAGATGCTCTCATAGAGG 59.993 52.174 13.06 0.00 45.12 3.69
2518 4235 3.305267 CGGTTGGAGATGCTCTCATAGAG 60.305 52.174 13.06 0.00 45.12 2.43
2519 4236 2.625314 CGGTTGGAGATGCTCTCATAGA 59.375 50.000 13.06 0.00 45.12 1.98
2520 4237 2.865670 GCGGTTGGAGATGCTCTCATAG 60.866 54.545 13.06 3.72 45.12 2.23
2521 4238 1.069204 GCGGTTGGAGATGCTCTCATA 59.931 52.381 13.06 2.07 45.12 2.15
2539 4256 1.996713 GCGTTTATTTAGCGCGGCG 60.997 57.895 19.62 19.62 41.70 6.46
2707 4432 4.299547 AAGCGCTCGAGTGTGCCA 62.300 61.111 25.72 0.00 43.73 4.92
2724 4449 4.124351 CGAAGAGGGTACGGCGCA 62.124 66.667 10.83 0.00 0.00 6.09
2768 4497 1.235948 TTACAATTTTCGCCGGCGGT 61.236 50.000 44.95 34.24 40.25 5.68
2780 4509 1.375551 GCGTCCATCGGGTTACAATT 58.624 50.000 0.00 0.00 40.26 2.32
2781 4510 0.463116 GGCGTCCATCGGGTTACAAT 60.463 55.000 0.00 0.00 40.26 2.71
2782 4511 1.078988 GGCGTCCATCGGGTTACAA 60.079 57.895 0.00 0.00 40.26 2.41
2783 4512 2.580276 GGCGTCCATCGGGTTACA 59.420 61.111 0.00 0.00 40.26 2.41
2784 4513 2.202974 GGGCGTCCATCGGGTTAC 60.203 66.667 0.00 0.00 40.26 2.50
2785 4514 3.840594 CGGGCGTCCATCGGGTTA 61.841 66.667 6.96 0.00 40.26 2.85
2814 4543 1.616187 CGACTGTAGGAAGGGTGAGGA 60.616 57.143 0.00 0.00 0.00 3.71
2935 4676 1.296392 CTGCCAAGGTCATCCGTGA 59.704 57.895 2.10 0.00 44.02 4.35
2972 4713 4.769063 CACGTGGTATGGCGGGCA 62.769 66.667 7.95 6.74 0.00 5.36
2998 4744 4.496927 CGCATTTGGGGGCTTCGC 62.497 66.667 0.00 0.00 0.00 4.70
3081 4830 5.415221 TGCAAGTTTTTCCTCAACGATTTT 58.585 33.333 0.00 0.00 0.00 1.82
3084 4833 3.004734 CCTGCAAGTTTTTCCTCAACGAT 59.995 43.478 0.00 0.00 0.00 3.73
3138 4888 1.664649 CAACAAGTGAGCTCGCCGA 60.665 57.895 23.37 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.