Multiple sequence alignment - TraesCS3B01G528200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G528200 chr3B 100.000 3605 0 0 1 3605 770345728 770349332 0.000000e+00 6658.0
1 TraesCS3B01G528200 chr3B 97.145 3187 74 7 435 3605 769297845 769301030 0.000000e+00 5365.0
2 TraesCS3B01G528200 chr3B 85.111 1753 241 11 916 2657 769404854 769403111 0.000000e+00 1773.0
3 TraesCS3B01G528200 chr3B 78.212 1432 239 50 992 2394 769995122 769993735 0.000000e+00 848.0
4 TraesCS3B01G528200 chr3B 97.337 413 11 0 1 413 756242350 756241938 0.000000e+00 702.0
5 TraesCS3B01G528200 chr3B 74.739 1722 337 42 692 2394 769907180 769905538 0.000000e+00 680.0
6 TraesCS3B01G528200 chr3B 79.086 875 169 10 962 1827 769192423 769191554 1.110000e-164 590.0
7 TraesCS3B01G528200 chr3B 78.440 923 180 14 925 1834 769156565 769157481 5.190000e-163 584.0
8 TraesCS3B01G528200 chr3B 74.438 1424 299 45 992 2393 770229024 770227644 1.460000e-153 553.0
9 TraesCS3B01G528200 chr3B 86.331 417 56 1 1956 2372 769002086 769001671 1.530000e-123 453.0
10 TraesCS3B01G528200 chr3B 86.990 392 45 3 2961 3352 769248485 769248100 1.540000e-118 436.0
11 TraesCS3B01G528200 chr3B 85.819 409 47 6 2949 3352 769305484 769305082 1.200000e-114 424.0
12 TraesCS3B01G528200 chr3B 85.575 409 48 6 2949 3352 770353783 770353381 5.570000e-113 418.0
13 TraesCS3B01G528200 chr3B 74.352 1041 209 38 809 1824 770353541 770352534 1.210000e-104 390.0
14 TraesCS3B01G528200 chr3B 74.258 1045 209 40 809 1827 769305242 769304232 5.650000e-103 385.0
15 TraesCS3B01G528200 chr3B 74.970 843 187 17 992 1824 769484345 769483517 2.050000e-97 366.0
16 TraesCS3B01G528200 chr3B 73.709 852 191 27 992 1827 770309974 770309140 5.850000e-78 302.0
17 TraesCS3B01G528200 chr3B 89.212 241 21 5 2949 3187 769418224 769417987 2.720000e-76 296.0
18 TraesCS3B01G528200 chr3B 88.832 197 14 6 492 686 769907531 769907341 6.020000e-58 235.0
19 TraesCS3B01G528200 chr3B 84.360 211 17 3 3151 3352 770310196 770309993 3.670000e-45 193.0
20 TraesCS3B01G528200 chr3B 90.647 139 13 0 2367 2505 768990036 768989898 6.150000e-43 185.0
21 TraesCS3B01G528200 chr3B 84.810 79 11 1 992 1069 769248081 769248003 1.070000e-10 78.7
22 TraesCS3B01G528200 chr5B 97.821 413 9 0 1 413 684054833 684055245 0.000000e+00 713.0
23 TraesCS3B01G528200 chr5B 97.094 413 12 0 1 413 649831202 649830790 0.000000e+00 697.0
24 TraesCS3B01G528200 chr5B 92.574 202 15 0 3347 3548 678086368 678086569 1.270000e-74 291.0
25 TraesCS3B01G528200 chr4A 97.094 413 12 0 1 413 621509782 621510194 0.000000e+00 697.0
26 TraesCS3B01G528200 chr7A 96.610 413 14 0 1 413 552978743 552978331 0.000000e+00 686.0
27 TraesCS3B01G528200 chr7A 98.333 60 1 0 3546 3605 36085728 36085669 4.920000e-19 106.0
28 TraesCS3B01G528200 chr6B 96.610 413 14 0 1 413 38966370 38966782 0.000000e+00 686.0
29 TraesCS3B01G528200 chr6B 96.368 413 15 0 1 413 692810686 692811098 0.000000e+00 680.0
30 TraesCS3B01G528200 chr6B 93.151 438 23 1 1 438 68673842 68674272 1.410000e-178 636.0
31 TraesCS3B01G528200 chr6B 95.844 385 16 0 29 413 49670587 49670203 1.100000e-174 623.0
32 TraesCS3B01G528200 chr3D 79.594 838 155 11 1001 1827 577284295 577283463 1.440000e-163 586.0
33 TraesCS3B01G528200 chrUn 78.280 907 179 13 925 1818 344085514 344086415 5.220000e-158 568.0
34 TraesCS3B01G528200 chrUn 86.224 392 48 3 2961 3352 298658322 298657937 1.550000e-113 420.0
35 TraesCS3B01G528200 chrUn 86.224 392 48 3 2961 3352 311035274 311035659 1.550000e-113 420.0
36 TraesCS3B01G528200 chrUn 86.224 392 48 3 2961 3352 311053079 311052694 1.550000e-113 420.0
37 TraesCS3B01G528200 chrUn 86.224 392 48 3 2961 3352 344523874 344524259 1.550000e-113 420.0
38 TraesCS3B01G528200 chrUn 96.667 60 2 0 3546 3605 65418024 65417965 2.290000e-17 100.0
39 TraesCS3B01G528200 chrUn 96.667 60 2 0 3546 3605 96359591 96359650 2.290000e-17 100.0
40 TraesCS3B01G528200 chrUn 96.667 60 2 0 3546 3605 404037375 404037434 2.290000e-17 100.0
41 TraesCS3B01G528200 chr2D 89.076 357 20 2 45 400 621814068 621814406 3.330000e-115 425.0
42 TraesCS3B01G528200 chr7B 96.392 194 7 0 3355 3548 638415089 638414896 1.610000e-83 320.0
43 TraesCS3B01G528200 chr1B 95.385 195 8 1 3355 3548 13047977 13048171 3.500000e-80 309.0
44 TraesCS3B01G528200 chr1D 94.872 195 10 0 3354 3548 418390418 418390224 4.520000e-79 305.0
45 TraesCS3B01G528200 chr7D 94.819 193 10 0 3356 3548 630764952 630764760 5.850000e-78 302.0
46 TraesCS3B01G528200 chr7D 94.330 194 10 1 3356 3548 74721525 74721718 2.720000e-76 296.0
47 TraesCS3B01G528200 chr2B 93.564 202 11 2 3349 3548 525788417 525788216 2.100000e-77 300.0
48 TraesCS3B01G528200 chr2B 94.330 194 10 1 3356 3548 63035676 63035483 2.720000e-76 296.0
49 TraesCS3B01G528200 chr2B 98.333 60 1 0 3546 3605 109123097 109123038 4.920000e-19 106.0
50 TraesCS3B01G528200 chr6D 96.667 60 2 0 3546 3605 358103605 358103664 2.290000e-17 100.0
51 TraesCS3B01G528200 chr4D 96.667 60 2 0 3546 3605 71407426 71407367 2.290000e-17 100.0
52 TraesCS3B01G528200 chr2A 95.312 64 2 1 3543 3605 771284359 771284296 2.290000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G528200 chr3B 770345728 770349332 3604 False 6658.0 6658 100.0000 1 3605 1 chr3B.!!$F3 3604
1 TraesCS3B01G528200 chr3B 769297845 769301030 3185 False 5365.0 5365 97.1450 435 3605 1 chr3B.!!$F2 3170
2 TraesCS3B01G528200 chr3B 769403111 769404854 1743 True 1773.0 1773 85.1110 916 2657 1 chr3B.!!$R5 1741
3 TraesCS3B01G528200 chr3B 769993735 769995122 1387 True 848.0 848 78.2120 992 2394 1 chr3B.!!$R8 1402
4 TraesCS3B01G528200 chr3B 769191554 769192423 869 True 590.0 590 79.0860 962 1827 1 chr3B.!!$R4 865
5 TraesCS3B01G528200 chr3B 769156565 769157481 916 False 584.0 584 78.4400 925 1834 1 chr3B.!!$F1 909
6 TraesCS3B01G528200 chr3B 770227644 770229024 1380 True 553.0 553 74.4380 992 2393 1 chr3B.!!$R9 1401
7 TraesCS3B01G528200 chr3B 769905538 769907531 1993 True 457.5 680 81.7855 492 2394 2 chr3B.!!$R12 1902
8 TraesCS3B01G528200 chr3B 769304232 769305484 1252 True 404.5 424 80.0385 809 3352 2 chr3B.!!$R11 2543
9 TraesCS3B01G528200 chr3B 770352534 770353783 1249 True 404.0 418 79.9635 809 3352 2 chr3B.!!$R14 2543
10 TraesCS3B01G528200 chr3B 769483517 769484345 828 True 366.0 366 74.9700 992 1824 1 chr3B.!!$R7 832
11 TraesCS3B01G528200 chr3B 770309140 770310196 1056 True 247.5 302 79.0345 992 3352 2 chr3B.!!$R13 2360
12 TraesCS3B01G528200 chr3D 577283463 577284295 832 True 586.0 586 79.5940 1001 1827 1 chr3D.!!$R1 826
13 TraesCS3B01G528200 chrUn 344085514 344086415 901 False 568.0 568 78.2800 925 1818 1 chrUn.!!$F3 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.172803 AACTATGCCGACGACCAGAC 59.827 55.000 0.00 0.0 0.00 3.51 F
416 417 0.179018 GACGGGAAATGGCCTAGCAT 60.179 55.000 3.32 0.0 0.00 3.79 F
429 430 0.315568 CTAGCATAGGTGGCGAGTCC 59.684 60.000 0.00 0.0 34.22 3.85 F
862 1034 0.588252 CACCACAGCCAACGAAAGAG 59.412 55.000 0.00 0.0 0.00 2.85 F
2424 2647 2.190313 TGCGGTGGCATCAGATCC 59.810 61.111 0.00 0.0 46.21 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1541 1.067250 GCCAGCACGAGAGGAGATC 59.933 63.158 0.00 0.0 0.00 2.75 R
2229 2446 1.271379 TGTGTAAGGCCTTGCTTCTCC 60.271 52.381 30.31 15.2 0.00 3.71 R
2424 2647 1.012486 GTTTCCTACCTCGCCGTGTG 61.012 60.000 0.00 0.0 0.00 3.82 R
2531 2754 0.179056 CACGGTCCACAGTTTGAGGT 60.179 55.000 0.00 0.0 29.78 3.85 R
3539 3763 0.680618 TCTGCTTGTTTGCCCATTGG 59.319 50.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.474806 CCTACAGCAAAGCCGTCG 58.525 61.111 0.00 0.00 0.00 5.12
18 19 2.100631 CCTACAGCAAAGCCGTCGG 61.101 63.158 6.99 6.99 0.00 4.79
29 30 4.924019 CCGTCGGCATAGGTGAAA 57.076 55.556 0.00 0.00 0.00 2.69
31 32 0.725117 CCGTCGGCATAGGTGAAAAC 59.275 55.000 0.00 0.00 0.00 2.43
32 33 0.725117 CGTCGGCATAGGTGAAAACC 59.275 55.000 0.00 0.00 0.00 3.27
41 42 2.109425 AGGTGAAAACCTATGCCGAC 57.891 50.000 0.00 0.00 38.58 4.79
42 43 0.725117 GGTGAAAACCTATGCCGACG 59.275 55.000 0.00 0.00 0.00 5.12
43 44 0.725117 GTGAAAACCTATGCCGACGG 59.275 55.000 10.29 10.29 0.00 4.79
67 68 2.050269 CCGTAGGCATACCCTCCTG 58.950 63.158 2.42 0.00 46.14 3.86
68 69 1.367840 CGTAGGCATACCCTCCTGC 59.632 63.158 2.42 0.00 44.96 4.85
72 73 2.512896 GCATACCCTCCTGCCAGG 59.487 66.667 3.69 3.69 36.46 4.45
73 74 2.072487 GCATACCCTCCTGCCAGGA 61.072 63.158 13.96 13.96 43.43 3.86
81 82 4.767255 CCTGCCAGGAGTCACCGC 62.767 72.222 4.15 0.00 44.74 5.68
82 83 4.007644 CTGCCAGGAGTCACCGCA 62.008 66.667 0.00 0.00 44.74 5.69
83 84 3.947132 CTGCCAGGAGTCACCGCAG 62.947 68.421 9.35 9.35 43.03 5.18
103 104 1.807226 CCGCCACGTGACAGAGATA 59.193 57.895 19.30 0.00 0.00 1.98
104 105 0.385751 CCGCCACGTGACAGAGATAT 59.614 55.000 19.30 0.00 0.00 1.63
105 106 1.481240 CGCCACGTGACAGAGATATG 58.519 55.000 19.30 0.00 0.00 1.78
106 107 1.212616 GCCACGTGACAGAGATATGC 58.787 55.000 19.30 3.51 0.00 3.14
111 112 1.759994 GTGACAGAGATATGCCGACG 58.240 55.000 0.00 0.00 0.00 5.12
112 113 0.668535 TGACAGAGATATGCCGACGG 59.331 55.000 10.29 10.29 0.00 4.79
140 141 3.491964 CCGTCGGCATAGATTTTCACCTA 60.492 47.826 0.00 0.00 0.00 3.08
141 142 4.307432 CGTCGGCATAGATTTTCACCTAT 58.693 43.478 0.00 0.00 0.00 2.57
147 148 5.597813 CATAGATTTTCACCTATGCCGAC 57.402 43.478 0.00 0.00 36.81 4.79
148 149 2.550978 AGATTTTCACCTATGCCGACG 58.449 47.619 0.00 0.00 0.00 5.12
149 150 1.597663 GATTTTCACCTATGCCGACGG 59.402 52.381 10.29 10.29 0.00 4.79
179 180 2.586079 CATACCTCTGCCACGCGG 60.586 66.667 12.47 0.00 36.06 6.46
196 197 2.509786 GCGGCCCGTGATTCGTTA 60.510 61.111 4.45 0.00 37.94 3.18
198 199 2.522638 CGGCCCGTGATTCGTTAGC 61.523 63.158 0.00 0.00 37.94 3.09
199 200 2.522638 GGCCCGTGATTCGTTAGCG 61.523 63.158 0.00 0.00 37.94 4.26
202 203 1.082117 CCCGTGATTCGTTAGCGCTT 61.082 55.000 18.68 0.00 38.14 4.68
203 204 0.719465 CCGTGATTCGTTAGCGCTTT 59.281 50.000 18.68 0.00 38.14 3.51
205 206 2.158143 CGTGATTCGTTAGCGCTTTTG 58.842 47.619 18.68 5.56 38.14 2.44
207 208 3.153735 GTGATTCGTTAGCGCTTTTGAC 58.846 45.455 18.68 9.04 38.14 3.18
208 209 2.159894 TGATTCGTTAGCGCTTTTGACG 60.160 45.455 18.68 20.52 38.14 4.35
209 210 0.509499 TTCGTTAGCGCTTTTGACGG 59.491 50.000 18.68 6.79 38.14 4.79
210 211 1.509162 CGTTAGCGCTTTTGACGGC 60.509 57.895 18.68 0.00 0.00 5.68
217 218 2.556287 CTTTTGACGGCGCAGTCC 59.444 61.111 32.66 18.00 40.26 3.85
229 230 3.027170 GCAGTCCGTTGCCGTCATG 62.027 63.158 0.00 0.00 38.13 3.07
231 232 1.667830 AGTCCGTTGCCGTCATGTG 60.668 57.895 0.00 0.00 0.00 3.21
232 233 1.666553 GTCCGTTGCCGTCATGTGA 60.667 57.895 0.00 0.00 0.00 3.58
233 234 1.069935 TCCGTTGCCGTCATGTGAA 59.930 52.632 0.00 0.00 0.00 3.18
234 235 0.533085 TCCGTTGCCGTCATGTGAAA 60.533 50.000 0.00 0.00 0.00 2.69
235 236 0.309302 CCGTTGCCGTCATGTGAAAA 59.691 50.000 0.00 0.00 0.00 2.29
237 238 2.241722 CGTTGCCGTCATGTGAAAATC 58.758 47.619 0.00 0.00 0.00 2.17
238 239 2.350293 CGTTGCCGTCATGTGAAAATCA 60.350 45.455 0.00 0.00 0.00 2.57
249 250 3.695506 GTGAAAATCACTGCCGACGGC 62.696 57.143 31.85 31.85 43.73 5.68
259 260 1.932277 GCCGACGGCTAAACTATGC 59.068 57.895 31.30 0.14 46.69 3.14
260 261 1.496403 GCCGACGGCTAAACTATGCC 61.496 60.000 31.30 0.00 46.69 4.40
265 266 3.654178 GGCTAAACTATGCCGACGA 57.346 52.632 0.00 0.00 39.71 4.20
266 267 1.206523 GGCTAAACTATGCCGACGAC 58.793 55.000 0.00 0.00 39.71 4.34
267 268 1.206523 GCTAAACTATGCCGACGACC 58.793 55.000 0.00 0.00 0.00 4.79
268 269 1.470285 GCTAAACTATGCCGACGACCA 60.470 52.381 0.00 0.00 0.00 4.02
269 270 2.460918 CTAAACTATGCCGACGACCAG 58.539 52.381 0.00 0.00 0.00 4.00
270 271 0.892755 AAACTATGCCGACGACCAGA 59.107 50.000 0.00 0.00 0.00 3.86
271 272 0.172803 AACTATGCCGACGACCAGAC 59.827 55.000 0.00 0.00 0.00 3.51
272 273 1.298413 CTATGCCGACGACCAGACG 60.298 63.158 0.00 0.00 37.73 4.18
277 278 2.504244 CGACGACCAGACGGAAGC 60.504 66.667 0.00 0.00 37.61 3.86
278 279 2.126031 GACGACCAGACGGAAGCC 60.126 66.667 0.00 0.00 37.61 4.35
315 316 3.357504 GCCGACGGCTAAACTATGT 57.642 52.632 31.30 0.00 46.69 2.29
316 317 1.206523 GCCGACGGCTAAACTATGTC 58.793 55.000 31.30 0.00 46.69 3.06
317 318 2.446231 GCCGACGGCTAAACTATGTCG 61.446 57.143 31.30 6.12 46.69 4.35
320 321 2.107178 GACGGCTAAACTATGTCGACG 58.893 52.381 11.62 0.00 35.13 5.12
321 322 1.202222 ACGGCTAAACTATGTCGACGG 60.202 52.381 11.62 6.27 35.13 4.79
322 323 1.202222 CGGCTAAACTATGTCGACGGT 60.202 52.381 11.62 6.93 32.57 4.83
323 324 2.457970 GGCTAAACTATGTCGACGGTC 58.542 52.381 11.62 0.00 0.00 4.79
324 325 2.098770 GGCTAAACTATGTCGACGGTCT 59.901 50.000 11.62 0.00 0.00 3.85
325 326 3.106672 GCTAAACTATGTCGACGGTCTG 58.893 50.000 11.62 1.90 0.00 3.51
326 327 3.181503 GCTAAACTATGTCGACGGTCTGA 60.182 47.826 11.62 2.78 0.00 3.27
327 328 2.915738 AACTATGTCGACGGTCTGAC 57.084 50.000 19.23 19.23 35.67 3.51
331 332 2.710440 TGTCGACGGTCTGACAAGA 58.290 52.632 23.51 5.49 41.82 3.02
341 342 2.991434 TCTGACAAGACTACGCTGAC 57.009 50.000 0.00 0.00 0.00 3.51
359 360 3.242268 CGTGATCTACGCTGACAGG 57.758 57.895 4.26 0.00 46.92 4.00
360 361 0.248661 CGTGATCTACGCTGACAGGG 60.249 60.000 17.34 17.34 46.92 4.45
361 362 0.528684 GTGATCTACGCTGACAGGGC 60.529 60.000 18.71 3.56 0.00 5.19
362 363 0.684479 TGATCTACGCTGACAGGGCT 60.684 55.000 18.71 9.14 0.00 5.19
363 364 1.319541 GATCTACGCTGACAGGGCTA 58.680 55.000 18.71 9.73 0.00 3.93
364 365 1.889829 GATCTACGCTGACAGGGCTAT 59.110 52.381 18.71 9.92 0.00 2.97
365 366 1.032794 TCTACGCTGACAGGGCTATG 58.967 55.000 18.71 7.24 0.00 2.23
366 367 0.598680 CTACGCTGACAGGGCTATGC 60.599 60.000 18.71 0.00 0.00 3.14
402 403 1.996292 CATAGATGTATGCCGACGGG 58.004 55.000 17.22 0.00 29.82 5.28
403 404 1.544246 CATAGATGTATGCCGACGGGA 59.456 52.381 17.22 14.58 34.06 5.14
404 405 1.694844 TAGATGTATGCCGACGGGAA 58.305 50.000 13.59 0.00 34.06 3.97
405 406 0.828022 AGATGTATGCCGACGGGAAA 59.172 50.000 13.59 1.24 34.06 3.13
406 407 1.416401 AGATGTATGCCGACGGGAAAT 59.584 47.619 13.59 6.74 34.06 2.17
407 408 1.531149 GATGTATGCCGACGGGAAATG 59.469 52.381 13.59 0.00 34.06 2.32
408 409 0.462937 TGTATGCCGACGGGAAATGG 60.463 55.000 13.59 0.00 34.06 3.16
411 412 4.796495 GCCGACGGGAAATGGCCT 62.796 66.667 17.22 0.00 41.70 5.19
412 413 2.904905 CCGACGGGAAATGGCCTA 59.095 61.111 5.81 0.00 34.06 3.93
413 414 1.227556 CCGACGGGAAATGGCCTAG 60.228 63.158 5.81 0.00 34.06 3.02
414 415 1.887707 CGACGGGAAATGGCCTAGC 60.888 63.158 3.32 0.00 0.00 3.42
415 416 1.223487 GACGGGAAATGGCCTAGCA 59.777 57.895 3.32 0.00 0.00 3.49
416 417 0.179018 GACGGGAAATGGCCTAGCAT 60.179 55.000 3.32 0.00 0.00 3.79
417 418 1.071699 GACGGGAAATGGCCTAGCATA 59.928 52.381 3.32 0.00 0.00 3.14
418 419 1.072331 ACGGGAAATGGCCTAGCATAG 59.928 52.381 3.32 0.00 38.80 2.23
428 429 3.875838 CTAGCATAGGTGGCGAGTC 57.124 57.895 0.00 0.00 34.22 3.36
429 430 0.315568 CTAGCATAGGTGGCGAGTCC 59.684 60.000 0.00 0.00 34.22 3.85
430 431 1.452953 TAGCATAGGTGGCGAGTCCG 61.453 60.000 0.00 0.00 37.80 4.79
431 432 2.417516 CATAGGTGGCGAGTCCGG 59.582 66.667 0.00 0.00 37.80 5.14
432 433 2.043248 ATAGGTGGCGAGTCCGGT 60.043 61.111 0.00 0.00 37.80 5.28
433 434 1.105167 CATAGGTGGCGAGTCCGGTA 61.105 60.000 0.00 0.00 37.80 4.02
434 435 0.822532 ATAGGTGGCGAGTCCGGTAG 60.823 60.000 0.00 0.00 37.80 3.18
435 436 2.202236 TAGGTGGCGAGTCCGGTAGT 62.202 60.000 0.00 0.00 37.80 2.73
436 437 2.181021 GTGGCGAGTCCGGTAGTG 59.819 66.667 0.00 0.00 37.80 2.74
437 438 3.755628 TGGCGAGTCCGGTAGTGC 61.756 66.667 0.00 1.76 37.80 4.40
438 439 4.849329 GGCGAGTCCGGTAGTGCG 62.849 72.222 0.00 0.74 36.06 5.34
461 462 5.400782 CGCAAGCATGATTCTAGTACTAGTG 59.599 44.000 25.58 18.04 34.84 2.74
679 684 9.262472 GTACATCGAAGTTGTATTGAACATTTC 57.738 33.333 0.00 0.00 38.10 2.17
717 877 1.222115 AAGTTGCGACGAACTCAGGC 61.222 55.000 0.00 0.00 35.01 4.85
722 882 1.079819 CGACGAACTCAGGCCATGT 60.080 57.895 5.01 0.00 0.00 3.21
723 883 1.354337 CGACGAACTCAGGCCATGTG 61.354 60.000 5.01 4.10 0.00 3.21
826 998 1.543429 GCAGGCCGGCTTAGATATGTT 60.543 52.381 28.56 0.00 0.00 2.71
862 1034 0.588252 CACCACAGCCAACGAAAGAG 59.412 55.000 0.00 0.00 0.00 2.85
938 1117 2.819608 GCAACAAGGCTAGTCCATTTCA 59.180 45.455 6.07 0.00 37.29 2.69
1438 1629 3.223157 CGAAAATTTGAGTGGTACGCAC 58.777 45.455 6.42 6.42 44.14 5.34
1949 2148 3.535280 TCATGACAGCGTGCCTTTATA 57.465 42.857 0.00 0.00 0.00 0.98
1989 2197 3.496515 CCAAGGGCAACAATGGAAACAAT 60.497 43.478 0.00 0.00 44.29 2.71
2131 2348 3.307339 GGACACTGCTCCAGAGAATTTCT 60.307 47.826 0.00 0.00 35.18 2.52
2156 2373 8.319057 TCACCTTTGAAGCTAGGAATCTTATA 57.681 34.615 7.28 0.00 35.45 0.98
2314 2537 5.765182 CCCAAGGCGATAACTCATCTTTATT 59.235 40.000 0.00 0.00 0.00 1.40
2400 2623 2.797156 CGTGGAGAAGACAAGAACACTG 59.203 50.000 0.00 0.00 0.00 3.66
2401 2624 3.134458 GTGGAGAAGACAAGAACACTGG 58.866 50.000 0.00 0.00 0.00 4.00
2424 2647 2.190313 TGCGGTGGCATCAGATCC 59.810 61.111 0.00 0.00 46.21 3.36
2466 2689 3.641434 AAGAGCACGAGTACTAGGGTA 57.359 47.619 7.11 0.00 0.00 3.69
2498 2721 8.468399 TCATATGCAGCAGATTCAACAAATAAA 58.532 29.630 0.00 0.00 0.00 1.40
2505 2728 8.514594 CAGCAGATTCAACAAATAAAGGAAGTA 58.485 33.333 0.00 0.00 0.00 2.24
2518 2741 5.382664 AAAGGAAGTACAGTGGAAAAGGA 57.617 39.130 0.00 0.00 0.00 3.36
2531 2754 5.667626 AGTGGAAAAGGATAGCCAGAGATTA 59.332 40.000 0.00 0.00 36.29 1.75
2539 2762 5.071115 AGGATAGCCAGAGATTACCTCAAAC 59.929 44.000 0.00 0.00 44.40 2.93
2541 2764 4.213564 AGCCAGAGATTACCTCAAACTG 57.786 45.455 0.00 0.00 44.40 3.16
2547 2770 4.020128 AGAGATTACCTCAAACTGTGGACC 60.020 45.833 1.92 0.00 44.40 4.46
2574 2797 4.338815 TCGGAGAGATTGCGGAGT 57.661 55.556 0.00 0.00 41.44 3.85
2671 2894 5.248477 TGCTTGTTGAAATCTACCCTAGACT 59.752 40.000 0.00 0.00 37.69 3.24
2677 2900 4.710375 TGAAATCTACCCTAGACTGGTGAC 59.290 45.833 0.00 0.00 37.69 3.67
2697 2921 5.538118 TGACGTATTGAGTCAGATTTGTGT 58.462 37.500 0.00 0.00 42.91 3.72
2710 2934 5.420421 TCAGATTTGTGTCTTTTGTTTCCCA 59.580 36.000 0.00 0.00 0.00 4.37
2714 2938 4.383850 TGTGTCTTTTGTTTCCCATGTG 57.616 40.909 0.00 0.00 0.00 3.21
2715 2939 3.123050 GTGTCTTTTGTTTCCCATGTGC 58.877 45.455 0.00 0.00 0.00 4.57
2717 2941 3.450457 TGTCTTTTGTTTCCCATGTGCTT 59.550 39.130 0.00 0.00 0.00 3.91
2726 2950 4.574674 TTCCCATGTGCTTAGATGTCTT 57.425 40.909 0.00 0.00 0.00 3.01
2732 2956 6.403636 CCCATGTGCTTAGATGTCTTGTTTAC 60.404 42.308 0.00 0.00 0.00 2.01
2965 3189 6.638096 ATGTTGCATCCAAATCGATATTCA 57.362 33.333 0.00 0.00 31.68 2.57
3337 3561 3.612247 TTCTTGAGCAGAGCGGCCC 62.612 63.158 0.00 0.00 31.12 5.80
3406 3630 3.326297 GCCAGATAAGCCCATTAGTCTCT 59.674 47.826 0.00 0.00 0.00 3.10
3412 3636 4.851639 AAGCCCATTAGTCTCTGTTCAT 57.148 40.909 0.00 0.00 0.00 2.57
3495 3719 2.693115 TGGGGGTATTGGTCCCGG 60.693 66.667 0.00 0.00 45.46 5.73
3539 3763 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
3562 3786 1.412079 TGGGCAAACAAGCAGAATGT 58.588 45.000 0.00 0.00 39.31 2.71
3576 3800 7.548780 ACAAGCAGAATGTTTTTATGTGTTGTT 59.451 29.630 0.00 0.00 37.46 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.725117 GTTTTCACCTATGCCGACGG 59.275 55.000 10.29 10.29 0.00 4.79
13 14 0.725117 GGTTTTCACCTATGCCGACG 59.275 55.000 0.00 0.00 40.44 5.12
24 25 0.725117 CCGTCGGCATAGGTTTTCAC 59.275 55.000 0.00 0.00 0.00 3.18
50 51 1.367840 GCAGGAGGGTATGCCTACG 59.632 63.158 0.00 0.00 36.41 3.51
56 57 4.399764 TCCTGGCAGGAGGGTATG 57.600 61.111 32.01 4.36 40.06 2.39
64 65 4.767255 GCGGTGACTCCTGGCAGG 62.767 72.222 28.01 28.01 36.46 4.85
65 66 3.947132 CTGCGGTGACTCCTGGCAG 62.947 68.421 7.75 7.75 41.60 4.85
67 68 4.767255 CCTGCGGTGACTCCTGGC 62.767 72.222 0.00 0.00 0.00 4.85
68 69 4.767255 GCCTGCGGTGACTCCTGG 62.767 72.222 0.00 0.00 0.00 4.45
84 85 2.279502 TATCTCTGTCACGTGGCGGC 62.280 60.000 24.15 0.00 0.00 6.53
85 86 0.385751 ATATCTCTGTCACGTGGCGG 59.614 55.000 23.05 23.05 0.00 6.13
87 88 1.212616 GCATATCTCTGTCACGTGGC 58.787 55.000 14.58 14.58 0.00 5.01
92 93 1.600663 CCGTCGGCATATCTCTGTCAC 60.601 57.143 0.00 0.00 0.00 3.67
93 94 0.668535 CCGTCGGCATATCTCTGTCA 59.331 55.000 0.00 0.00 0.00 3.58
94 95 3.481009 CCGTCGGCATATCTCTGTC 57.519 57.895 0.00 0.00 0.00 3.51
119 120 2.550978 AGGTGAAAATCTATGCCGACG 58.449 47.619 0.00 0.00 0.00 5.12
120 121 5.597813 CATAGGTGAAAATCTATGCCGAC 57.402 43.478 0.00 0.00 37.22 4.79
125 126 4.150627 CGTCGGCATAGGTGAAAATCTATG 59.849 45.833 2.27 2.27 43.26 2.23
127 128 3.491964 CCGTCGGCATAGGTGAAAATCTA 60.492 47.826 0.00 0.00 0.00 1.98
130 131 1.663695 CCGTCGGCATAGGTGAAAAT 58.336 50.000 0.00 0.00 0.00 1.82
131 132 3.146783 CCGTCGGCATAGGTGAAAA 57.853 52.632 0.00 0.00 0.00 2.29
132 133 4.924019 CCGTCGGCATAGGTGAAA 57.076 55.556 0.00 0.00 0.00 2.69
161 162 3.264897 CGCGTGGCAGAGGTATGC 61.265 66.667 0.00 0.00 45.74 3.14
187 188 2.159894 CGTCAAAAGCGCTAACGAATCA 60.160 45.455 22.31 0.00 43.93 2.57
188 189 2.418714 CGTCAAAAGCGCTAACGAATC 58.581 47.619 22.31 6.75 43.93 2.52
189 190 1.127951 CCGTCAAAAGCGCTAACGAAT 59.872 47.619 26.09 3.85 43.93 3.34
190 191 0.509499 CCGTCAAAAGCGCTAACGAA 59.491 50.000 26.09 5.88 43.93 3.85
191 192 1.893168 GCCGTCAAAAGCGCTAACGA 61.893 55.000 26.09 14.93 43.93 3.85
192 193 1.509162 GCCGTCAAAAGCGCTAACG 60.509 57.895 12.05 18.00 44.07 3.18
194 195 2.857448 CGCCGTCAAAAGCGCTAA 59.143 55.556 12.05 0.00 46.50 3.09
199 200 2.127232 GACTGCGCCGTCAAAAGC 60.127 61.111 24.70 0.00 34.11 3.51
220 221 2.987413 GTGATTTTCACATGACGGCA 57.013 45.000 0.00 0.00 46.22 5.69
242 243 2.601562 GGCATAGTTTAGCCGTCGG 58.398 57.895 6.99 6.99 41.70 4.79
249 250 2.098607 TCTGGTCGTCGGCATAGTTTAG 59.901 50.000 0.00 0.00 0.00 1.85
250 251 2.093890 TCTGGTCGTCGGCATAGTTTA 58.906 47.619 0.00 0.00 0.00 2.01
251 252 0.892755 TCTGGTCGTCGGCATAGTTT 59.107 50.000 0.00 0.00 0.00 2.66
252 253 0.172803 GTCTGGTCGTCGGCATAGTT 59.827 55.000 0.00 0.00 0.00 2.24
253 254 1.807886 GTCTGGTCGTCGGCATAGT 59.192 57.895 0.00 0.00 0.00 2.12
254 255 1.298413 CGTCTGGTCGTCGGCATAG 60.298 63.158 0.00 0.00 0.00 2.23
255 256 2.767445 CCGTCTGGTCGTCGGCATA 61.767 63.158 0.00 0.00 37.50 3.14
256 257 4.129737 CCGTCTGGTCGTCGGCAT 62.130 66.667 0.00 0.00 37.50 4.40
258 259 3.966026 CTTCCGTCTGGTCGTCGGC 62.966 68.421 0.00 0.00 42.84 5.54
259 260 2.178521 CTTCCGTCTGGTCGTCGG 59.821 66.667 0.00 0.00 44.19 4.79
260 261 2.504244 GCTTCCGTCTGGTCGTCG 60.504 66.667 0.00 0.00 36.30 5.12
261 262 2.126031 GGCTTCCGTCTGGTCGTC 60.126 66.667 0.00 0.00 36.30 4.20
262 263 4.052229 CGGCTTCCGTCTGGTCGT 62.052 66.667 0.00 0.00 42.73 4.34
298 299 1.064505 TCGACATAGTTTAGCCGTCGG 59.935 52.381 6.99 6.99 47.00 4.79
300 301 2.107178 CGTCGACATAGTTTAGCCGTC 58.893 52.381 17.16 0.00 0.00 4.79
301 302 1.202222 CCGTCGACATAGTTTAGCCGT 60.202 52.381 17.16 0.00 0.00 5.68
302 303 1.202222 ACCGTCGACATAGTTTAGCCG 60.202 52.381 17.16 0.00 0.00 5.52
303 304 2.098770 AGACCGTCGACATAGTTTAGCC 59.901 50.000 17.16 0.00 0.00 3.93
304 305 3.106672 CAGACCGTCGACATAGTTTAGC 58.893 50.000 17.16 0.00 0.00 3.09
305 306 4.142752 TGTCAGACCGTCGACATAGTTTAG 60.143 45.833 17.16 4.32 37.23 1.85
306 307 3.752747 TGTCAGACCGTCGACATAGTTTA 59.247 43.478 17.16 0.00 37.23 2.01
307 308 2.555325 TGTCAGACCGTCGACATAGTTT 59.445 45.455 17.16 2.00 37.23 2.66
308 309 2.156917 TGTCAGACCGTCGACATAGTT 58.843 47.619 17.16 0.00 37.23 2.24
309 310 1.817357 TGTCAGACCGTCGACATAGT 58.183 50.000 17.16 9.50 37.23 2.12
310 311 2.418976 TCTTGTCAGACCGTCGACATAG 59.581 50.000 17.16 18.28 41.55 2.23
311 312 2.161012 GTCTTGTCAGACCGTCGACATA 59.839 50.000 17.16 12.35 43.50 2.29
312 313 1.068472 GTCTTGTCAGACCGTCGACAT 60.068 52.381 17.16 2.13 43.50 3.06
313 314 0.309922 GTCTTGTCAGACCGTCGACA 59.690 55.000 17.16 16.91 43.50 4.35
314 315 3.089117 GTCTTGTCAGACCGTCGAC 57.911 57.895 5.18 5.18 43.50 4.20
322 323 1.197036 CGTCAGCGTAGTCTTGTCAGA 59.803 52.381 0.00 0.00 0.00 3.27
323 324 1.607713 CGTCAGCGTAGTCTTGTCAG 58.392 55.000 0.00 0.00 0.00 3.51
324 325 3.767287 CGTCAGCGTAGTCTTGTCA 57.233 52.632 0.00 0.00 0.00 3.58
342 343 0.528684 GCCCTGTCAGCGTAGATCAC 60.529 60.000 0.00 0.00 0.00 3.06
343 344 0.684479 AGCCCTGTCAGCGTAGATCA 60.684 55.000 0.00 0.00 34.64 2.92
344 345 1.319541 TAGCCCTGTCAGCGTAGATC 58.680 55.000 0.00 0.00 34.64 2.75
345 346 1.615883 CATAGCCCTGTCAGCGTAGAT 59.384 52.381 0.00 0.00 34.64 1.98
346 347 1.032794 CATAGCCCTGTCAGCGTAGA 58.967 55.000 0.00 0.00 34.64 2.59
347 348 0.598680 GCATAGCCCTGTCAGCGTAG 60.599 60.000 0.00 0.00 34.64 3.51
348 349 1.441729 GCATAGCCCTGTCAGCGTA 59.558 57.895 0.00 0.00 34.64 4.42
349 350 2.187946 GCATAGCCCTGTCAGCGT 59.812 61.111 0.00 0.00 34.64 5.07
350 351 2.590007 GGCATAGCCCTGTCAGCG 60.590 66.667 0.00 0.00 44.06 5.18
375 376 2.271800 GCATACATCTATGCCTACGGC 58.728 52.381 1.74 0.00 46.80 5.68
383 384 1.544246 TCCCGTCGGCATACATCTATG 59.456 52.381 5.50 0.00 33.92 2.23
384 385 1.919240 TCCCGTCGGCATACATCTAT 58.081 50.000 5.50 0.00 0.00 1.98
385 386 1.694844 TTCCCGTCGGCATACATCTA 58.305 50.000 5.50 0.00 0.00 1.98
386 387 0.828022 TTTCCCGTCGGCATACATCT 59.172 50.000 5.50 0.00 0.00 2.90
387 388 1.531149 CATTTCCCGTCGGCATACATC 59.469 52.381 5.50 0.00 0.00 3.06
388 389 1.593196 CATTTCCCGTCGGCATACAT 58.407 50.000 5.50 0.00 0.00 2.29
389 390 0.462937 CCATTTCCCGTCGGCATACA 60.463 55.000 5.50 0.00 0.00 2.29
390 391 1.782028 GCCATTTCCCGTCGGCATAC 61.782 60.000 5.50 0.00 44.25 2.39
391 392 1.525077 GCCATTTCCCGTCGGCATA 60.525 57.895 5.50 0.00 44.25 3.14
392 393 2.828549 GCCATTTCCCGTCGGCAT 60.829 61.111 5.50 0.00 44.25 4.40
394 395 3.394635 TAGGCCATTTCCCGTCGGC 62.395 63.158 5.01 0.00 44.10 5.54
395 396 1.227556 CTAGGCCATTTCCCGTCGG 60.228 63.158 5.01 3.60 0.00 4.79
396 397 1.887707 GCTAGGCCATTTCCCGTCG 60.888 63.158 5.01 0.00 0.00 5.12
397 398 0.179018 ATGCTAGGCCATTTCCCGTC 60.179 55.000 5.01 0.00 0.00 4.79
398 399 1.072331 CTATGCTAGGCCATTTCCCGT 59.928 52.381 5.01 0.00 0.00 5.28
399 400 1.611673 CCTATGCTAGGCCATTTCCCG 60.612 57.143 5.01 0.00 39.48 5.14
400 401 2.206576 CCTATGCTAGGCCATTTCCC 57.793 55.000 5.01 0.00 39.48 3.97
410 411 0.315568 GGACTCGCCACCTATGCTAG 59.684 60.000 0.00 0.00 36.34 3.42
411 412 1.452953 CGGACTCGCCACCTATGCTA 61.453 60.000 0.00 0.00 35.94 3.49
412 413 2.786495 CGGACTCGCCACCTATGCT 61.786 63.158 0.00 0.00 35.94 3.79
413 414 2.279517 CGGACTCGCCACCTATGC 60.280 66.667 0.00 0.00 35.94 3.14
414 415 1.105167 TACCGGACTCGCCACCTATG 61.105 60.000 9.46 0.00 35.94 2.23
415 416 0.822532 CTACCGGACTCGCCACCTAT 60.823 60.000 9.46 0.00 35.94 2.57
416 417 1.452651 CTACCGGACTCGCCACCTA 60.453 63.158 9.46 0.00 35.94 3.08
417 418 2.754658 CTACCGGACTCGCCACCT 60.755 66.667 9.46 0.00 35.94 4.00
418 419 3.066814 ACTACCGGACTCGCCACC 61.067 66.667 9.46 0.00 35.94 4.61
419 420 2.181021 CACTACCGGACTCGCCAC 59.819 66.667 9.46 0.00 35.94 5.01
420 421 3.755628 GCACTACCGGACTCGCCA 61.756 66.667 9.46 0.00 35.94 5.69
421 422 4.849329 CGCACTACCGGACTCGCC 62.849 72.222 9.46 0.00 34.56 5.54
423 424 3.620300 TTGCGCACTACCGGACTCG 62.620 63.158 11.12 5.17 0.00 4.18
424 425 1.805945 CTTGCGCACTACCGGACTC 60.806 63.158 11.12 0.00 0.00 3.36
425 426 2.261671 CTTGCGCACTACCGGACT 59.738 61.111 11.12 0.00 0.00 3.85
426 427 3.488090 GCTTGCGCACTACCGGAC 61.488 66.667 11.12 0.00 35.78 4.79
427 428 3.997397 TGCTTGCGCACTACCGGA 61.997 61.111 11.12 0.00 42.25 5.14
434 435 7.971105 CTAGTACTAGAATCATGCTTGCGCAC 61.971 46.154 23.20 0.00 41.30 5.34
435 436 6.018017 CTAGTACTAGAATCATGCTTGCGCA 61.018 44.000 23.20 5.66 42.09 6.09
436 437 3.126831 AGTACTAGAATCATGCTTGCGC 58.873 45.455 0.00 0.00 0.00 6.09
437 438 5.400782 CACTAGTACTAGAATCATGCTTGCG 59.599 44.000 31.93 5.80 36.97 4.85
438 439 5.694006 CCACTAGTACTAGAATCATGCTTGC 59.306 44.000 31.93 0.00 36.97 4.01
461 462 2.294449 AAGGAGACAAGGAAAAGGCC 57.706 50.000 0.00 0.00 0.00 5.19
717 877 3.055719 GGGACACCGCACACATGG 61.056 66.667 0.00 0.00 0.00 3.66
722 882 0.902984 AGTATCTGGGACACCGCACA 60.903 55.000 0.00 0.00 40.75 4.57
723 883 0.249398 AAGTATCTGGGACACCGCAC 59.751 55.000 0.00 0.00 40.75 5.34
826 998 2.560981 TGGTGAATCAAGTGAGCGACTA 59.439 45.455 0.00 0.00 33.09 2.59
892 1067 2.483363 CCAAGCTGGCTATCTCACTCTG 60.483 54.545 0.00 0.00 0.00 3.35
1350 1541 1.067250 GCCAGCACGAGAGGAGATC 59.933 63.158 0.00 0.00 0.00 2.75
1438 1629 2.423185 TCATAAATTCACCAGCGCCTTG 59.577 45.455 2.29 0.00 0.00 3.61
1571 1765 4.441415 GTCTTACGCCGAAGAACTGATATG 59.559 45.833 0.00 0.00 37.20 1.78
1949 2148 2.180204 GCATCGCCGCCACTACAAT 61.180 57.895 0.00 0.00 0.00 2.71
2131 2348 5.505181 AAGATTCCTAGCTTCAAAGGTGA 57.495 39.130 4.76 0.00 37.33 4.02
2156 2373 5.015072 TCCTCTAGAGAGTCATGAGGCATAT 59.985 44.000 21.76 0.00 42.77 1.78
2229 2446 1.271379 TGTGTAAGGCCTTGCTTCTCC 60.271 52.381 30.31 15.20 0.00 3.71
2314 2537 3.069079 AGTCGTAGCCTGAGTGTTAGA 57.931 47.619 0.00 0.00 0.00 2.10
2424 2647 1.012486 GTTTCCTACCTCGCCGTGTG 61.012 60.000 0.00 0.00 0.00 3.82
2466 2689 4.885325 TGAATCTGCTGCATATGACAATGT 59.115 37.500 6.97 0.00 0.00 2.71
2498 2721 5.338463 GCTATCCTTTTCCACTGTACTTCCT 60.338 44.000 0.00 0.00 0.00 3.36
2505 2728 2.912956 TCTGGCTATCCTTTTCCACTGT 59.087 45.455 0.00 0.00 0.00 3.55
2518 2741 5.426833 ACAGTTTGAGGTAATCTCTGGCTAT 59.573 40.000 0.00 0.00 42.86 2.97
2531 2754 0.179056 CACGGTCCACAGTTTGAGGT 60.179 55.000 0.00 0.00 29.78 3.85
2547 2770 1.994507 ATCTCTCCGAGGAACGCACG 61.995 60.000 0.00 0.00 41.07 5.34
2574 2797 3.860378 GCTCAATCCATGCCGAAAACAAA 60.860 43.478 0.00 0.00 0.00 2.83
2671 2894 4.801330 AATCTGACTCAATACGTCACCA 57.199 40.909 0.00 0.00 36.54 4.17
2677 2900 6.712241 AAGACACAAATCTGACTCAATACG 57.288 37.500 0.00 0.00 0.00 3.06
2689 2913 6.018832 CACATGGGAAACAAAAGACACAAATC 60.019 38.462 0.00 0.00 0.00 2.17
2697 2921 5.136828 TCTAAGCACATGGGAAACAAAAGA 58.863 37.500 0.00 0.00 0.00 2.52
2710 2934 6.372659 CCAGTAAACAAGACATCTAAGCACAT 59.627 38.462 0.00 0.00 0.00 3.21
2714 2938 4.938226 AGCCAGTAAACAAGACATCTAAGC 59.062 41.667 0.00 0.00 0.00 3.09
2715 2939 5.352569 CCAGCCAGTAAACAAGACATCTAAG 59.647 44.000 0.00 0.00 0.00 2.18
2717 2941 4.530553 TCCAGCCAGTAAACAAGACATCTA 59.469 41.667 0.00 0.00 0.00 1.98
2726 2950 3.420893 CAAAGGATCCAGCCAGTAAACA 58.579 45.455 15.82 0.00 0.00 2.83
2732 2956 1.547372 CAAACCAAAGGATCCAGCCAG 59.453 52.381 15.82 0.68 0.00 4.85
3050 3274 2.863809 ACAGAATGGGTGTTGGAGAAC 58.136 47.619 0.00 0.00 43.62 3.01
3145 3369 6.968263 ATCTCTAAATCTGCTAGCTGTACA 57.032 37.500 17.23 0.00 0.00 2.90
3146 3370 7.923344 TGAAATCTCTAAATCTGCTAGCTGTAC 59.077 37.037 17.23 0.00 0.00 2.90
3285 3509 4.851639 ATCTTGTTGTTCTCCTATGGCT 57.148 40.909 0.00 0.00 0.00 4.75
3440 3664 3.692406 GCCTCACGAACCGGGACT 61.692 66.667 6.32 0.00 32.99 3.85
3495 3719 1.971695 CCAAAGGGGCCAGACGAAC 60.972 63.158 4.39 0.00 0.00 3.95
3539 3763 0.680618 TCTGCTTGTTTGCCCATTGG 59.319 50.000 0.00 0.00 0.00 3.16
3562 3786 5.543507 AGGGCATGAACAACACATAAAAA 57.456 34.783 0.00 0.00 0.00 1.94
3576 3800 4.849235 TGTATTCCCACATATAGGGCATGA 59.151 41.667 0.00 0.00 46.36 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.