Multiple sequence alignment - TraesCS3B01G528100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G528100 chr3B 100.000 3505 0 0 1 3505 769815310 769811806 0.000000e+00 6473.0
1 TraesCS3B01G528100 chr3B 93.536 1315 62 16 1726 3033 769632368 769631070 0.000000e+00 1936.0
2 TraesCS3B01G528100 chr3B 95.777 1042 39 2 606 1644 770120021 770118982 0.000000e+00 1676.0
3 TraesCS3B01G528100 chr3B 94.207 794 43 1 940 1730 769633203 769632410 0.000000e+00 1208.0
4 TraesCS3B01G528100 chr3B 97.879 613 9 1 1 609 770120664 770120052 0.000000e+00 1057.0
5 TraesCS3B01G528100 chr3B 90.398 729 41 10 1 704 769634329 769633605 0.000000e+00 931.0
6 TraesCS3B01G528100 chr3B 90.691 666 48 7 1726 2380 770116992 770116330 0.000000e+00 874.0
7 TraesCS3B01G528100 chr3B 73.664 767 145 33 1799 2520 770108240 770107486 9.720000e-61 244.0
8 TraesCS3B01G528100 chr3B 73.144 741 147 31 1817 2521 770403345 770402621 5.890000e-53 219.0
9 TraesCS3B01G528100 chr3B 73.082 743 144 34 1817 2521 769377498 769376774 2.740000e-51 213.0
10 TraesCS3B01G528100 chr3B 72.825 747 151 30 1817 2527 769267038 769266308 1.280000e-49 207.0
11 TraesCS3B01G528100 chr3B 79.468 263 49 5 2046 2304 769403637 769403376 7.730000e-42 182.0
12 TraesCS3B01G528100 chr3B 72.037 751 151 35 1817 2527 770312209 770311478 6.020000e-38 169.0
13 TraesCS3B01G528100 chr3B 72.370 713 134 37 1823 2496 769157507 769158195 2.160000e-37 167.0
14 TraesCS3B01G528100 chr3B 72.150 535 108 24 1796 2301 769309479 769308957 1.320000e-24 124.0
15 TraesCS3B01G528100 chr3B 94.937 79 4 0 1652 1730 770117112 770117034 1.320000e-24 124.0
16 TraesCS3B01G528100 chr3B 70.921 760 158 39 1801 2521 770357773 770357038 1.710000e-23 121.0
17 TraesCS3B01G528100 chr3B 93.750 64 3 1 703 766 769633574 769633512 1.040000e-15 95.3
18 TraesCS3B01G528100 chr3B 87.013 77 10 0 1817 1893 769456182 769456106 1.730000e-13 87.9
19 TraesCS3B01G528100 chr3D 97.596 1040 24 1 1726 2765 577340465 577339427 0.000000e+00 1781.0
20 TraesCS3B01G528100 chr3D 95.844 794 30 1 940 1730 577341300 577340507 0.000000e+00 1280.0
21 TraesCS3B01G528100 chr3D 90.502 737 35 22 1 704 577342409 577341675 0.000000e+00 941.0
22 TraesCS3B01G528100 chr3D 90.419 167 11 3 764 928 577341516 577341353 7.620000e-52 215.0
23 TraesCS3B01G528100 chr3A 94.717 795 37 3 940 1730 712629598 712628805 0.000000e+00 1230.0
24 TraesCS3B01G528100 chr3A 93.505 816 37 4 1935 2750 712620344 712619545 0.000000e+00 1199.0
25 TraesCS3B01G528100 chr3A 94.824 425 11 8 33 446 712630751 712630327 0.000000e+00 652.0
26 TraesCS3B01G528100 chr3A 97.619 210 5 0 1726 1935 712628763 712628554 9.250000e-96 361.0
27 TraesCS3B01G528100 chr3A 73.651 797 144 42 1793 2545 712654285 712653511 7.510000e-62 248.0
28 TraesCS3B01G528100 chr3A 91.720 157 12 1 456 612 712630279 712630124 2.120000e-52 217.0
29 TraesCS3B01G528100 chr3A 95.918 98 4 0 607 704 712630093 712629996 3.620000e-35 159.0
30 TraesCS3B01G528100 chr3A 88.636 88 6 2 3029 3113 712589804 712589718 1.720000e-18 104.0
31 TraesCS3B01G528100 chr2D 92.250 400 19 9 3110 3505 4820242 4820633 1.100000e-154 556.0
32 TraesCS3B01G528100 chr2D 92.000 400 20 9 3110 3505 4777645 4778036 5.110000e-153 551.0
33 TraesCS3B01G528100 chr2D 91.750 400 21 9 3110 3505 4735144 4735535 2.380000e-151 545.0
34 TraesCS3B01G528100 chr2D 91.250 400 23 9 3110 3505 4714219 4714610 5.150000e-148 534.0
35 TraesCS3B01G528100 chr2D 89.968 309 18 10 3110 3414 4675821 4676120 1.530000e-103 387.0
36 TraesCS3B01G528100 chr2D 89.968 309 18 10 3110 3414 4694046 4694345 1.530000e-103 387.0
37 TraesCS3B01G528100 chr2D 95.000 100 4 1 3407 3505 4677552 4677651 4.680000e-34 156.0
38 TraesCS3B01G528100 chr2D 95.000 100 4 1 3407 3505 4695814 4695913 4.680000e-34 156.0
39 TraesCS3B01G528100 chrUn 72.168 715 132 40 1823 2496 344086456 344087144 4.680000e-34 156.0
40 TraesCS3B01G528100 chrUn 89.062 64 6 1 2433 2496 333458287 333458225 1.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G528100 chr3B 769811806 769815310 3504 True 6473.000 6473 100.00000 1 3505 1 chr3B.!!$R6 3504
1 TraesCS3B01G528100 chr3B 769631070 769634329 3259 True 1042.575 1936 92.97275 1 3033 4 chr3B.!!$R11 3032
2 TraesCS3B01G528100 chr3B 770116330 770120664 4334 True 932.750 1676 94.82100 1 2380 4 chr3B.!!$R12 2379
3 TraesCS3B01G528100 chr3B 770107486 770108240 754 True 244.000 244 73.66400 1799 2520 1 chr3B.!!$R7 721
4 TraesCS3B01G528100 chr3B 770402621 770403345 724 True 219.000 219 73.14400 1817 2521 1 chr3B.!!$R10 704
5 TraesCS3B01G528100 chr3B 769376774 769377498 724 True 213.000 213 73.08200 1817 2521 1 chr3B.!!$R3 704
6 TraesCS3B01G528100 chr3B 769266308 769267038 730 True 207.000 207 72.82500 1817 2527 1 chr3B.!!$R1 710
7 TraesCS3B01G528100 chr3D 577339427 577342409 2982 True 1054.250 1781 93.59025 1 2765 4 chr3D.!!$R1 2764
8 TraesCS3B01G528100 chr3A 712619545 712620344 799 True 1199.000 1199 93.50500 1935 2750 1 chr3A.!!$R2 815
9 TraesCS3B01G528100 chr3A 712628554 712630751 2197 True 523.800 1230 94.95960 33 1935 5 chr3A.!!$R4 1902
10 TraesCS3B01G528100 chr3A 712653511 712654285 774 True 248.000 248 73.65100 1793 2545 1 chr3A.!!$R3 752
11 TraesCS3B01G528100 chr2D 4675821 4677651 1830 False 271.500 387 92.48400 3110 3505 2 chr2D.!!$F5 395
12 TraesCS3B01G528100 chr2D 4694046 4695913 1867 False 271.500 387 92.48400 3110 3505 2 chr2D.!!$F6 395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.397941 CAGGGGAGAGCAACAACAGA 59.602 55.000 0.00 0.00 0.00 3.41 F
1390 1644 3.076621 TGTGAAGGTGATCATTGCTCAC 58.923 45.455 11.33 11.33 41.83 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1682 0.174389 ACTCTGTAGCACCATCAGCG 59.826 55.0 0.0 0.0 37.01 5.18 R
3269 5506 0.871722 TGCACTGTTGGCGTTCATAC 59.128 50.0 0.0 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 0.397941 CAGGGGAGAGCAACAACAGA 59.602 55.000 0.00 0.00 0.00 3.41
261 270 8.574251 TCACCACTATTATGTGCAAGTTTTAT 57.426 30.769 0.00 0.00 36.68 1.40
938 1192 4.907875 AGCTCCCTTCTAGTTGCCATAATA 59.092 41.667 0.00 0.00 0.00 0.98
1100 1354 6.236409 ACGATGATAAATCAGATGAAGCCAT 58.764 36.000 0.00 0.00 40.64 4.40
1390 1644 3.076621 TGTGAAGGTGATCATTGCTCAC 58.923 45.455 11.33 11.33 41.83 3.51
1428 1682 3.368236 CCGTTCAAAGATTCGAGAGGTTC 59.632 47.826 0.00 0.00 0.00 3.62
1520 1777 4.041321 CCCTCTCATCAGGCATATCTTCAA 59.959 45.833 0.00 0.00 31.23 2.69
1534 1791 1.748493 TCTTCAAAGGCAAAACGCTGT 59.252 42.857 0.00 0.00 41.91 4.40
1700 3820 2.493675 TGCTGCGTCTTTCAGAGAGTAT 59.506 45.455 0.00 0.00 34.31 2.12
1707 3827 6.766467 TGCGTCTTTCAGAGAGTATAGACATA 59.234 38.462 0.00 0.00 34.31 2.29
1708 3828 7.445707 TGCGTCTTTCAGAGAGTATAGACATAT 59.554 37.037 0.00 0.00 34.31 1.78
1765 3931 5.313772 TCCAACTCCCTACCCAAGATTTTTA 59.686 40.000 0.00 0.00 0.00 1.52
1906 4093 3.093814 TGCCTTCTCATGTCGGTAACTA 58.906 45.455 0.00 0.00 0.00 2.24
2734 4963 5.771666 ACTATGCTAGTATTTGGCAATGCAT 59.228 36.000 7.79 17.85 41.76 3.96
2792 5021 1.968493 TCTTCGTGAACCAGGCTTAGT 59.032 47.619 0.00 0.00 0.00 2.24
2820 5049 3.318275 TCAGGCTCAATATACGACTCCAC 59.682 47.826 0.00 0.00 0.00 4.02
2825 5054 4.774586 CTCAATATACGACTCCACGACTC 58.225 47.826 0.00 0.00 37.03 3.36
2826 5055 4.449131 TCAATATACGACTCCACGACTCT 58.551 43.478 0.00 0.00 37.03 3.24
2901 5133 0.753262 GATGATACCCTCCGCACTGT 59.247 55.000 0.00 0.00 0.00 3.55
2912 5144 1.084370 CCGCACTGTCCCGAGAATTC 61.084 60.000 0.00 0.00 0.00 2.17
2915 5147 2.416836 CGCACTGTCCCGAGAATTCTTA 60.417 50.000 9.87 0.00 0.00 2.10
2925 5157 8.079809 TGTCCCGAGAATTCTTAAAAACATTTC 58.920 33.333 9.87 0.00 0.00 2.17
2927 5159 9.509956 TCCCGAGAATTCTTAAAAACATTTCTA 57.490 29.630 9.87 0.00 0.00 2.10
2969 5201 5.429957 GATGTGGTCATCAGGAAATTAGC 57.570 43.478 3.72 0.00 46.78 3.09
2986 5218 6.469782 AATTAGCAGACATGGTTTTATGGG 57.530 37.500 0.00 0.00 38.36 4.00
3003 5239 9.719355 GTTTTATGGGGTACAATTGAAAAGATT 57.281 29.630 13.59 0.00 0.00 2.40
3008 5244 9.889128 ATGGGGTACAATTGAAAAGATTATTTG 57.111 29.630 13.59 0.00 0.00 2.32
3011 5247 9.382275 GGGTACAATTGAAAAGATTATTTGCAT 57.618 29.630 13.59 0.00 0.00 3.96
3094 5330 6.822667 TTTGCATAAACATGAGTCATGAGT 57.177 33.333 34.38 23.57 43.81 3.41
3095 5331 5.806366 TGCATAAACATGAGTCATGAGTG 57.194 39.130 34.38 24.94 43.81 3.51
3096 5332 5.247862 TGCATAAACATGAGTCATGAGTGT 58.752 37.500 34.38 18.59 43.81 3.55
3097 5333 5.706833 TGCATAAACATGAGTCATGAGTGTT 59.293 36.000 34.38 23.20 43.81 3.32
3098 5334 6.207221 TGCATAAACATGAGTCATGAGTGTTT 59.793 34.615 34.38 26.67 43.81 2.83
3099 5335 7.390162 TGCATAAACATGAGTCATGAGTGTTTA 59.610 33.333 34.38 27.67 43.81 2.01
3100 5336 8.236586 GCATAAACATGAGTCATGAGTGTTTAA 58.763 33.333 34.38 16.41 43.92 1.52
3101 5337 9.764870 CATAAACATGAGTCATGAGTGTTTAAG 57.235 33.333 34.38 22.46 43.92 1.85
3102 5338 6.808008 AACATGAGTCATGAGTGTTTAAGG 57.192 37.500 34.38 8.40 43.81 2.69
3103 5339 4.697352 ACATGAGTCATGAGTGTTTAAGGC 59.303 41.667 34.38 0.00 43.81 4.35
3104 5340 4.350368 TGAGTCATGAGTGTTTAAGGCA 57.650 40.909 8.05 0.00 0.00 4.75
3105 5341 4.065088 TGAGTCATGAGTGTTTAAGGCAC 58.935 43.478 8.05 4.64 37.13 5.01
3107 5343 5.011635 TGAGTCATGAGTGTTTAAGGCACTA 59.988 40.000 8.05 5.07 45.99 2.74
3108 5344 5.865085 AGTCATGAGTGTTTAAGGCACTAA 58.135 37.500 1.14 7.86 45.99 2.24
3109 5345 5.934625 AGTCATGAGTGTTTAAGGCACTAAG 59.065 40.000 1.14 7.68 45.99 2.18
3110 5346 5.932303 GTCATGAGTGTTTAAGGCACTAAGA 59.068 40.000 12.71 9.28 45.99 2.10
3111 5347 6.426937 GTCATGAGTGTTTAAGGCACTAAGAA 59.573 38.462 12.71 3.33 45.99 2.52
3112 5348 6.426937 TCATGAGTGTTTAAGGCACTAAGAAC 59.573 38.462 12.71 3.96 45.99 3.01
3113 5349 5.676552 TGAGTGTTTAAGGCACTAAGAACA 58.323 37.500 12.71 5.92 45.99 3.18
3114 5350 6.116806 TGAGTGTTTAAGGCACTAAGAACAA 58.883 36.000 12.71 0.00 45.99 2.83
3115 5351 6.037830 TGAGTGTTTAAGGCACTAAGAACAAC 59.962 38.462 12.71 2.37 45.99 3.32
3116 5352 6.120220 AGTGTTTAAGGCACTAAGAACAACT 58.880 36.000 11.50 0.00 44.41 3.16
3117 5353 7.277396 AGTGTTTAAGGCACTAAGAACAACTA 58.723 34.615 11.50 0.00 44.41 2.24
3118 5354 7.226128 AGTGTTTAAGGCACTAAGAACAACTAC 59.774 37.037 11.50 0.00 44.41 2.73
3119 5355 7.226128 GTGTTTAAGGCACTAAGAACAACTACT 59.774 37.037 5.37 0.00 38.49 2.57
3120 5356 8.423349 TGTTTAAGGCACTAAGAACAACTACTA 58.577 33.333 0.00 0.00 38.49 1.82
3121 5357 9.264719 GTTTAAGGCACTAAGAACAACTACTAA 57.735 33.333 0.00 0.00 38.49 2.24
3123 5359 9.649167 TTAAGGCACTAAGAACAACTACTAATC 57.351 33.333 0.00 0.00 38.49 1.75
3130 5366 4.243270 AGAACAACTACTAATCGTGCACC 58.757 43.478 12.15 0.00 0.00 5.01
3236 5473 8.954950 TTATTTGAAATTGCTGAAGGAAACAA 57.045 26.923 0.00 0.00 0.00 2.83
3254 5491 8.600449 GGAAACAAAATTCCAATTGTCATACA 57.400 30.769 4.43 0.00 46.70 2.29
3255 5492 9.218440 GGAAACAAAATTCCAATTGTCATACAT 57.782 29.630 4.43 0.00 46.70 2.29
3257 5494 7.599630 ACAAAATTCCAATTGTCATACATGC 57.400 32.000 4.43 0.00 34.84 4.06
3258 5495 7.160049 ACAAAATTCCAATTGTCATACATGCA 58.840 30.769 4.43 0.00 34.84 3.96
3259 5496 7.660617 ACAAAATTCCAATTGTCATACATGCAA 59.339 29.630 4.43 0.00 34.84 4.08
3260 5497 7.837202 AAATTCCAATTGTCATACATGCAAG 57.163 32.000 4.43 0.00 31.19 4.01
3261 5498 4.374843 TCCAATTGTCATACATGCAAGC 57.625 40.909 4.43 0.00 31.19 4.01
3264 5501 3.788333 ATTGTCATACATGCAAGCCAC 57.212 42.857 0.00 0.00 31.19 5.01
3266 5503 2.725637 TGTCATACATGCAAGCCACAT 58.274 42.857 0.00 0.00 0.00 3.21
3269 5506 2.871633 TCATACATGCAAGCCACATACG 59.128 45.455 0.00 0.00 0.00 3.06
3273 5510 2.613595 ACATGCAAGCCACATACGTATG 59.386 45.455 29.48 29.48 39.55 2.39
3392 5629 7.445707 TCCTTGCACATACAGTTTTACACATAA 59.554 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
261 270 1.167851 CAGGGCGCAAAATCTGAGAA 58.832 50.000 10.83 0.00 0.00 2.87
576 628 6.736179 AGAGGTTTCCTAATTCTCCCTTAAGT 59.264 38.462 0.97 0.00 31.76 2.24
583 635 4.434520 CGACAGAGGTTTCCTAATTCTCC 58.565 47.826 0.00 0.00 31.76 3.71
938 1192 6.122964 GGAGCATCTTTAGATTTTGTACCCT 58.877 40.000 0.00 0.00 33.73 4.34
1100 1354 0.395862 CTCTAGGCCACTTCCTCCGA 60.396 60.000 5.01 0.00 37.66 4.55
1339 1593 0.813821 GAGGAGACAAATGCCTTGGC 59.186 55.000 4.43 4.43 44.30 4.52
1428 1682 0.174389 ACTCTGTAGCACCATCAGCG 59.826 55.000 0.00 0.00 37.01 5.18
1534 1791 2.027285 CCGGATGCATCACCATATACCA 60.027 50.000 27.25 0.00 0.00 3.25
1700 3820 7.338703 ACTTGACTGTAGTTCCGAATATGTCTA 59.661 37.037 0.00 0.00 0.00 2.59
1707 3827 3.006967 AGCACTTGACTGTAGTTCCGAAT 59.993 43.478 0.00 0.00 0.00 3.34
1708 3828 2.364324 AGCACTTGACTGTAGTTCCGAA 59.636 45.455 0.00 0.00 0.00 4.30
1765 3931 2.375174 TCAGCCTCTGGTGGTAAACATT 59.625 45.455 0.00 0.00 40.42 2.71
2380 4606 3.472943 ATCTGCTCCTGCCGCATCC 62.473 63.158 0.00 0.00 36.70 3.51
2589 4818 2.023673 CAACACAAGGTCCTGCTTTCA 58.976 47.619 0.00 0.00 0.00 2.69
2812 5041 3.093566 CACAAGAGTCGTGGAGTCG 57.906 57.895 10.89 0.00 37.12 4.18
2820 5049 7.596749 ATTATTAGTCAAACCACAAGAGTCG 57.403 36.000 0.00 0.00 0.00 4.18
2825 5054 8.730680 AGCAGTAATTATTAGTCAAACCACAAG 58.269 33.333 0.00 0.00 0.00 3.16
2826 5055 8.630054 AGCAGTAATTATTAGTCAAACCACAA 57.370 30.769 0.00 0.00 0.00 3.33
2849 5081 2.675348 AGCGAGAGTTAATTGCAAGAGC 59.325 45.455 4.94 0.00 42.57 4.09
2867 5099 9.953697 GAGGGTATCATCTAGTTATATTAAGCG 57.046 37.037 0.00 0.00 0.00 4.68
2886 5118 2.064581 GGGACAGTGCGGAGGGTAT 61.065 63.158 0.00 0.00 0.00 2.73
2901 5133 8.404107 AGAAATGTTTTTAAGAATTCTCGGGA 57.596 30.769 8.78 0.00 0.00 5.14
2950 5182 4.333926 GTCTGCTAATTTCCTGATGACCAC 59.666 45.833 0.00 0.00 0.00 4.16
2961 5193 6.980397 CCCATAAAACCATGTCTGCTAATTTC 59.020 38.462 0.00 0.00 0.00 2.17
2966 5198 3.268334 ACCCCATAAAACCATGTCTGCTA 59.732 43.478 0.00 0.00 0.00 3.49
2969 5201 4.594970 TGTACCCCATAAAACCATGTCTG 58.405 43.478 0.00 0.00 0.00 3.51
3069 5305 7.595875 CACTCATGACTCATGTTTATGCAAAAA 59.404 33.333 16.96 0.00 41.98 1.94
3070 5306 7.085746 CACTCATGACTCATGTTTATGCAAAA 58.914 34.615 16.96 0.00 41.98 2.44
3071 5307 6.207221 ACACTCATGACTCATGTTTATGCAAA 59.793 34.615 16.96 0.00 41.98 3.68
3072 5308 5.706833 ACACTCATGACTCATGTTTATGCAA 59.293 36.000 16.96 0.00 41.98 4.08
3073 5309 5.247862 ACACTCATGACTCATGTTTATGCA 58.752 37.500 16.96 0.00 41.98 3.96
3074 5310 5.808042 ACACTCATGACTCATGTTTATGC 57.192 39.130 16.96 0.00 41.98 3.14
3075 5311 9.764870 CTTAAACACTCATGACTCATGTTTATG 57.235 33.333 20.00 18.65 42.32 1.90
3076 5312 8.950210 CCTTAAACACTCATGACTCATGTTTAT 58.050 33.333 20.00 7.91 42.32 1.40
3077 5313 7.094805 GCCTTAAACACTCATGACTCATGTTTA 60.095 37.037 16.96 17.59 42.08 2.01
3078 5314 6.294176 GCCTTAAACACTCATGACTCATGTTT 60.294 38.462 16.96 18.92 43.78 2.83
3079 5315 5.182001 GCCTTAAACACTCATGACTCATGTT 59.818 40.000 16.96 7.70 41.98 2.71
3080 5316 4.697352 GCCTTAAACACTCATGACTCATGT 59.303 41.667 16.96 0.00 41.98 3.21
3081 5317 4.696877 TGCCTTAAACACTCATGACTCATG 59.303 41.667 12.25 12.25 42.60 3.07
3082 5318 4.697352 GTGCCTTAAACACTCATGACTCAT 59.303 41.667 0.00 0.00 35.12 2.90
3083 5319 4.065088 GTGCCTTAAACACTCATGACTCA 58.935 43.478 0.00 0.00 35.12 3.41
3084 5320 4.319177 AGTGCCTTAAACACTCATGACTC 58.681 43.478 5.23 0.00 45.06 3.36
3085 5321 4.357918 AGTGCCTTAAACACTCATGACT 57.642 40.909 5.23 0.00 45.06 3.41
3086 5322 5.932303 TCTTAGTGCCTTAAACACTCATGAC 59.068 40.000 12.72 0.00 45.06 3.06
3087 5323 6.109156 TCTTAGTGCCTTAAACACTCATGA 57.891 37.500 12.72 0.00 45.06 3.07
3088 5324 6.204688 TGTTCTTAGTGCCTTAAACACTCATG 59.795 38.462 12.72 6.48 45.06 3.07
3089 5325 6.296026 TGTTCTTAGTGCCTTAAACACTCAT 58.704 36.000 12.72 0.00 45.06 2.90
3090 5326 5.676552 TGTTCTTAGTGCCTTAAACACTCA 58.323 37.500 12.72 3.76 45.06 3.41
3091 5327 6.260271 AGTTGTTCTTAGTGCCTTAAACACTC 59.740 38.462 12.72 1.96 45.06 3.51
3093 5329 6.373186 AGTTGTTCTTAGTGCCTTAAACAC 57.627 37.500 0.96 0.96 38.35 3.32
3094 5330 7.277396 AGTAGTTGTTCTTAGTGCCTTAAACA 58.723 34.615 0.00 0.00 0.00 2.83
3095 5331 7.725818 AGTAGTTGTTCTTAGTGCCTTAAAC 57.274 36.000 0.00 0.00 0.00 2.01
3097 5333 9.649167 GATTAGTAGTTGTTCTTAGTGCCTTAA 57.351 33.333 0.00 0.00 0.00 1.85
3098 5334 7.972277 CGATTAGTAGTTGTTCTTAGTGCCTTA 59.028 37.037 0.00 0.00 0.00 2.69
3099 5335 6.812160 CGATTAGTAGTTGTTCTTAGTGCCTT 59.188 38.462 0.00 0.00 0.00 4.35
3100 5336 6.071503 ACGATTAGTAGTTGTTCTTAGTGCCT 60.072 38.462 0.00 0.00 0.00 4.75
3101 5337 6.034683 CACGATTAGTAGTTGTTCTTAGTGCC 59.965 42.308 0.00 0.00 0.00 5.01
3102 5338 6.453922 GCACGATTAGTAGTTGTTCTTAGTGC 60.454 42.308 0.00 0.00 41.09 4.40
3103 5339 6.584942 TGCACGATTAGTAGTTGTTCTTAGTG 59.415 38.462 0.00 0.00 0.00 2.74
3104 5340 6.585322 GTGCACGATTAGTAGTTGTTCTTAGT 59.415 38.462 0.00 0.00 0.00 2.24
3105 5341 6.034683 GGTGCACGATTAGTAGTTGTTCTTAG 59.965 42.308 11.45 0.00 0.00 2.18
3106 5342 5.865552 GGTGCACGATTAGTAGTTGTTCTTA 59.134 40.000 11.45 0.00 0.00 2.10
3107 5343 4.689345 GGTGCACGATTAGTAGTTGTTCTT 59.311 41.667 11.45 0.00 0.00 2.52
3108 5344 4.021368 AGGTGCACGATTAGTAGTTGTTCT 60.021 41.667 11.45 0.00 0.00 3.01
3109 5345 4.091509 CAGGTGCACGATTAGTAGTTGTTC 59.908 45.833 11.45 0.00 0.00 3.18
3110 5346 3.994392 CAGGTGCACGATTAGTAGTTGTT 59.006 43.478 11.45 0.00 0.00 2.83
3111 5347 3.585862 CAGGTGCACGATTAGTAGTTGT 58.414 45.455 11.45 0.00 0.00 3.32
3112 5348 2.348666 GCAGGTGCACGATTAGTAGTTG 59.651 50.000 11.45 0.00 41.59 3.16
3113 5349 2.618053 GCAGGTGCACGATTAGTAGTT 58.382 47.619 11.45 0.00 41.59 2.24
3114 5350 2.295253 GCAGGTGCACGATTAGTAGT 57.705 50.000 11.45 0.00 41.59 2.73
3130 5366 8.285394 ATCTTATTTAGATACGTGCATTTGCAG 58.715 33.333 5.29 3.27 46.00 4.41
3165 5401 9.613428 TCAGATTTATACCGACATGAAAAGAAT 57.387 29.630 0.00 0.00 0.00 2.40
3224 5461 7.495279 TGACAATTGGAATTTTGTTTCCTTCAG 59.505 33.333 10.83 0.00 44.63 3.02
3236 5473 6.314400 GCTTGCATGTATGACAATTGGAATTT 59.686 34.615 10.83 0.00 0.00 1.82
3242 5479 3.861113 GTGGCTTGCATGTATGACAATTG 59.139 43.478 6.80 3.24 0.00 2.32
3244 5481 3.090790 TGTGGCTTGCATGTATGACAAT 58.909 40.909 6.80 0.00 0.00 2.71
3245 5482 2.512705 TGTGGCTTGCATGTATGACAA 58.487 42.857 6.80 0.00 0.00 3.18
3246 5483 2.197283 TGTGGCTTGCATGTATGACA 57.803 45.000 0.82 0.82 0.00 3.58
3247 5484 3.303329 CGTATGTGGCTTGCATGTATGAC 60.303 47.826 0.70 0.00 0.00 3.06
3248 5485 2.871633 CGTATGTGGCTTGCATGTATGA 59.128 45.455 0.70 0.00 0.00 2.15
3249 5486 2.613595 ACGTATGTGGCTTGCATGTATG 59.386 45.455 1.14 0.00 0.00 2.39
3250 5487 2.917933 ACGTATGTGGCTTGCATGTAT 58.082 42.857 1.14 0.00 0.00 2.29
3251 5488 2.394930 ACGTATGTGGCTTGCATGTA 57.605 45.000 1.14 0.00 0.00 2.29
3252 5489 2.394930 TACGTATGTGGCTTGCATGT 57.605 45.000 0.00 0.00 0.00 3.21
3253 5490 2.871633 TCATACGTATGTGGCTTGCATG 59.128 45.455 29.56 7.70 35.26 4.06
3254 5491 3.192541 TCATACGTATGTGGCTTGCAT 57.807 42.857 29.56 0.00 35.26 3.96
3255 5492 2.675844 GTTCATACGTATGTGGCTTGCA 59.324 45.455 29.56 9.85 35.26 4.08
3256 5493 2.285602 CGTTCATACGTATGTGGCTTGC 60.286 50.000 29.56 14.48 42.72 4.01
3257 5494 3.569304 CGTTCATACGTATGTGGCTTG 57.431 47.619 29.56 14.24 42.72 4.01
3269 5506 0.871722 TGCACTGTTGGCGTTCATAC 59.128 50.000 0.00 0.00 0.00 2.39
3273 5510 1.323235 GTTTTTGCACTGTTGGCGTTC 59.677 47.619 0.00 0.00 0.00 3.95
3279 5516 6.847289 GCTTGAAATATGTTTTTGCACTGTTG 59.153 34.615 0.00 0.00 0.00 3.33
3282 5519 6.421501 TGAGCTTGAAATATGTTTTTGCACTG 59.578 34.615 0.00 0.00 0.00 3.66
3341 5578 7.710896 AGTAATTCAATGATTTTGCCTAGCTC 58.289 34.615 0.00 0.00 0.00 4.09
3455 7171 9.865321 ATTTGAATGGTGTCATCTTTGAATAAG 57.135 29.630 0.00 0.00 32.48 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.