Multiple sequence alignment - TraesCS3B01G527500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G527500 chr3B 100.000 908 0 0 818 1725 769398121 769399028 0.000000e+00 1677.0
1 TraesCS3B01G527500 chr3B 90.840 786 46 13 826 1594 770556449 770557225 0.000000e+00 1029.0
2 TraesCS3B01G527500 chr3B 100.000 550 0 0 1 550 769397304 769397853 0.000000e+00 1016.0
3 TraesCS3B01G527500 chr3B 100.000 427 0 0 2171 2597 769399474 769399900 0.000000e+00 789.0
4 TraesCS3B01G527500 chr3B 82.000 100 10 7 1600 1695 769398998 769398903 7.710000e-11 78.7
5 TraesCS3B01G527500 chr3A 89.769 909 57 20 818 1725 712698676 712699549 0.000000e+00 1131.0
6 TraesCS3B01G527500 chr3A 90.758 422 35 2 2177 2597 22541319 22541737 6.280000e-156 560.0
7 TraesCS3B01G527500 chr3A 79.332 479 75 17 1127 1594 712729476 712729011 5.390000e-82 315.0
8 TraesCS3B01G527500 chr3A 100.000 33 0 0 1600 1632 712699519 712699487 7.760000e-06 62.1
9 TraesCS3B01G527500 chr3A 100.000 30 0 0 1633 1662 712699512 712699483 3.610000e-04 56.5
10 TraesCS3B01G527500 chr3D 89.301 916 45 23 818 1723 577381907 577382779 0.000000e+00 1099.0
11 TraesCS3B01G527500 chr3D 91.274 424 33 2 2175 2597 567944905 567945325 2.240000e-160 575.0
12 TraesCS3B01G527500 chr3D 84.008 494 68 8 49 538 577381430 577381916 5.060000e-127 464.0
13 TraesCS3B01G527500 chr3D 90.141 71 6 1 1127 1197 577414854 577414785 9.900000e-15 91.6
14 TraesCS3B01G527500 chr3D 100.000 33 0 0 1600 1632 577382751 577382719 7.760000e-06 62.1
15 TraesCS3B01G527500 chr3D 100.000 30 0 0 1633 1662 577382744 577382715 3.610000e-04 56.5
16 TraesCS3B01G527500 chr7B 91.469 422 32 2 2177 2597 747636124 747636542 6.230000e-161 577.0
17 TraesCS3B01G527500 chr4A 91.469 422 32 2 2177 2597 609392511 609392929 6.230000e-161 577.0
18 TraesCS3B01G527500 chr4A 90.758 422 35 2 2177 2597 609308887 609309305 6.280000e-156 560.0
19 TraesCS3B01G527500 chr6B 91.232 422 33 2 2177 2597 506865192 506864774 2.900000e-159 571.0
20 TraesCS3B01G527500 chr5B 90.867 427 35 2 2172 2597 523851484 523851907 1.040000e-158 569.0
21 TraesCS3B01G527500 chr2D 91.038 424 32 4 2175 2597 437964034 437964452 3.750000e-158 568.0
22 TraesCS3B01G527500 chr2B 90.995 422 34 2 2177 2597 35016194 35015776 1.350000e-157 566.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G527500 chr3B 769397304 769399900 2596 False 1160.666667 1677 100.0000 1 2597 3 chr3B.!!$F2 2596
1 TraesCS3B01G527500 chr3B 770556449 770557225 776 False 1029.000000 1029 90.8400 826 1594 1 chr3B.!!$F1 768
2 TraesCS3B01G527500 chr3A 712698676 712699549 873 False 1131.000000 1131 89.7690 818 1725 1 chr3A.!!$F2 907
3 TraesCS3B01G527500 chr3D 577381430 577382779 1349 False 781.500000 1099 86.6545 49 1723 2 chr3D.!!$F2 1674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 543 0.03467 GCAGGATCTCAAAGGCACCT 60.035 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 2559 0.105709 TGCCTGACTGGATCCGGATA 60.106 55.0 27.9 13.66 38.35 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.591792 AAGAAAACAGAATGAGAAAAGAAAAGG 57.408 29.630 0.00 0.00 39.69 3.11
47 48 7.708322 AGAAAACAGAATGAGAAAAGAAAAGGC 59.292 33.333 0.00 0.00 39.69 4.35
48 49 6.469782 AACAGAATGAGAAAAGAAAAGGCA 57.530 33.333 0.00 0.00 39.69 4.75
49 50 6.469782 ACAGAATGAGAAAAGAAAAGGCAA 57.530 33.333 0.00 0.00 39.69 4.52
50 51 6.276091 ACAGAATGAGAAAAGAAAAGGCAAC 58.724 36.000 0.00 0.00 39.69 4.17
127 128 2.431683 CGCATACATGGGGGAGGG 59.568 66.667 0.00 0.00 37.12 4.30
137 138 4.424711 GGGGAGGGCATGCGTGAA 62.425 66.667 12.44 0.00 0.00 3.18
163 164 4.448210 AGCGAGTTAAAAAGTGTGGAAGA 58.552 39.130 0.00 0.00 0.00 2.87
164 165 5.063880 AGCGAGTTAAAAAGTGTGGAAGAT 58.936 37.500 0.00 0.00 0.00 2.40
165 166 5.049405 AGCGAGTTAAAAAGTGTGGAAGATG 60.049 40.000 0.00 0.00 0.00 2.90
171 172 3.372440 AAAGTGTGGAAGATGGGGATC 57.628 47.619 0.00 0.00 0.00 3.36
172 173 0.833287 AGTGTGGAAGATGGGGATCG 59.167 55.000 0.00 0.00 0.00 3.69
176 177 1.131638 TGGAAGATGGGGATCGAAGG 58.868 55.000 0.00 0.00 0.00 3.46
186 187 1.546476 GGGATCGAAGGAGATATGCGT 59.454 52.381 0.00 0.00 0.00 5.24
190 191 3.355626 TCGAAGGAGATATGCGTCAAG 57.644 47.619 0.00 0.00 0.00 3.02
191 192 2.688446 TCGAAGGAGATATGCGTCAAGT 59.312 45.455 0.00 0.00 0.00 3.16
211 212 0.982704 ACTCTGCTGCTTGTGGATCT 59.017 50.000 0.00 0.00 0.00 2.75
224 225 4.257267 TGTGGATCTGTGGCTTATATCG 57.743 45.455 0.00 0.00 0.00 2.92
231 232 3.318275 TCTGTGGCTTATATCGGTCTCAC 59.682 47.826 0.00 0.00 0.00 3.51
232 233 2.364324 TGTGGCTTATATCGGTCTCACC 59.636 50.000 0.00 0.00 34.05 4.02
236 237 4.202535 TGGCTTATATCGGTCTCACCTCTA 60.203 45.833 0.00 0.00 35.66 2.43
244 245 5.578005 TCGGTCTCACCTCTATAAAACAG 57.422 43.478 0.00 0.00 35.66 3.16
245 246 4.113354 CGGTCTCACCTCTATAAAACAGC 58.887 47.826 0.00 0.00 35.66 4.40
246 247 4.113354 GGTCTCACCTCTATAAAACAGCG 58.887 47.826 0.00 0.00 34.73 5.18
249 250 5.867716 GTCTCACCTCTATAAAACAGCGAAA 59.132 40.000 0.00 0.00 0.00 3.46
255 256 6.985059 ACCTCTATAAAACAGCGAAATAGGAC 59.015 38.462 0.00 0.00 0.00 3.85
258 259 2.467566 AAACAGCGAAATAGGACGGT 57.532 45.000 0.00 0.00 40.75 4.83
266 267 3.181523 GCGAAATAGGACGGTGACTTTTC 60.182 47.826 0.00 0.00 0.00 2.29
270 271 5.422214 AATAGGACGGTGACTTTTCATCT 57.578 39.130 0.00 0.00 33.11 2.90
299 300 6.589830 ATCGAATCGGTTTCTTCACTAATG 57.410 37.500 1.76 0.00 31.73 1.90
304 305 4.513442 TCGGTTTCTTCACTAATGGATGG 58.487 43.478 0.00 0.00 0.00 3.51
309 310 6.016777 GGTTTCTTCACTAATGGATGGCATAG 60.017 42.308 0.00 0.00 0.00 2.23
310 311 4.645535 TCTTCACTAATGGATGGCATAGC 58.354 43.478 0.00 0.00 0.00 2.97
316 317 0.324943 ATGGATGGCATAGCGGGTAC 59.675 55.000 0.00 0.00 0.00 3.34
323 324 4.959560 TGGCATAGCGGGTACTTTATAA 57.040 40.909 0.00 0.00 0.00 0.98
324 325 4.890088 TGGCATAGCGGGTACTTTATAAG 58.110 43.478 0.00 0.00 0.00 1.73
331 332 5.346522 AGCGGGTACTTTATAAGAACTTCG 58.653 41.667 0.00 0.00 0.00 3.79
334 335 5.363101 GGGTACTTTATAAGAACTTCGGGG 58.637 45.833 0.00 0.00 0.00 5.73
335 336 5.363101 GGTACTTTATAAGAACTTCGGGGG 58.637 45.833 0.00 0.00 0.00 5.40
337 338 6.098266 GGTACTTTATAAGAACTTCGGGGGTA 59.902 42.308 0.00 0.00 0.00 3.69
340 341 7.052248 ACTTTATAAGAACTTCGGGGGTATTG 58.948 38.462 0.00 0.00 0.00 1.90
345 346 3.824443 AGAACTTCGGGGGTATTGTTTTG 59.176 43.478 0.00 0.00 0.00 2.44
349 350 0.806241 CGGGGGTATTGTTTTGGACG 59.194 55.000 0.00 0.00 0.00 4.79
353 354 1.814394 GGGTATTGTTTTGGACGGACC 59.186 52.381 0.00 0.00 39.54 4.46
361 362 2.326773 TTTGGACGGACCGCCAGAAA 62.327 55.000 23.13 16.04 42.61 2.52
362 363 2.119484 TTGGACGGACCGCCAGAAAT 62.119 55.000 23.13 0.68 42.61 2.17
363 364 2.106683 GGACGGACCGCCAGAAATG 61.107 63.158 15.39 0.00 0.00 2.32
368 369 1.068588 CGGACCGCCAGAAATGATAGA 59.931 52.381 0.00 0.00 0.00 1.98
405 406 9.791801 TTAGGCAAAGATAAAGATATATGTGCA 57.208 29.630 7.64 0.00 43.02 4.57
406 407 8.874744 AGGCAAAGATAAAGATATATGTGCAT 57.125 30.769 7.64 0.00 43.02 3.96
426 429 8.872845 TGTGCATATGTATGAATTATGATCGTC 58.127 33.333 4.29 0.00 35.75 4.20
445 448 8.557029 TGATCGTCTATGTATGTACTGTGTTAG 58.443 37.037 0.00 0.00 0.00 2.34
486 489 2.485479 CGGATCGATGAGGTGGGAAAAT 60.485 50.000 0.54 0.00 0.00 1.82
487 490 3.244078 CGGATCGATGAGGTGGGAAAATA 60.244 47.826 0.54 0.00 0.00 1.40
489 492 4.757149 GGATCGATGAGGTGGGAAAATAAG 59.243 45.833 0.54 0.00 0.00 1.73
490 493 5.454755 GGATCGATGAGGTGGGAAAATAAGA 60.455 44.000 0.54 0.00 0.00 2.10
501 504 5.912955 GTGGGAAAATAAGAAACGTGACAAG 59.087 40.000 0.00 0.00 0.00 3.16
502 505 5.591067 TGGGAAAATAAGAAACGTGACAAGT 59.409 36.000 0.00 0.00 0.00 3.16
503 506 6.140786 GGGAAAATAAGAAACGTGACAAGTC 58.859 40.000 0.00 0.00 0.00 3.01
507 510 7.548196 AAATAAGAAACGTGACAAGTCTTCA 57.452 32.000 13.98 0.00 31.28 3.02
528 531 2.887568 CGCGACTGGTGCAGGATC 60.888 66.667 0.00 0.00 35.51 3.36
529 532 2.581354 GCGACTGGTGCAGGATCT 59.419 61.111 0.00 0.00 35.51 2.75
530 533 1.520342 GCGACTGGTGCAGGATCTC 60.520 63.158 0.00 0.00 35.51 2.75
531 534 1.893062 CGACTGGTGCAGGATCTCA 59.107 57.895 0.00 0.00 35.51 3.27
532 535 0.247460 CGACTGGTGCAGGATCTCAA 59.753 55.000 0.00 0.00 35.51 3.02
533 536 1.338105 CGACTGGTGCAGGATCTCAAA 60.338 52.381 0.00 0.00 35.51 2.69
534 537 2.354259 GACTGGTGCAGGATCTCAAAG 58.646 52.381 0.00 0.00 35.51 2.77
535 538 1.004044 ACTGGTGCAGGATCTCAAAGG 59.996 52.381 0.00 0.00 35.51 3.11
536 539 0.322816 TGGTGCAGGATCTCAAAGGC 60.323 55.000 0.00 0.00 0.00 4.35
537 540 0.322816 GGTGCAGGATCTCAAAGGCA 60.323 55.000 0.00 0.00 0.00 4.75
538 541 0.807496 GTGCAGGATCTCAAAGGCAC 59.193 55.000 0.00 0.00 43.78 5.01
539 542 0.322816 TGCAGGATCTCAAAGGCACC 60.323 55.000 0.00 0.00 0.00 5.01
540 543 0.034670 GCAGGATCTCAAAGGCACCT 60.035 55.000 0.00 0.00 0.00 4.00
541 544 1.615384 GCAGGATCTCAAAGGCACCTT 60.615 52.381 0.00 0.00 37.98 3.50
542 545 2.363683 CAGGATCTCAAAGGCACCTTC 58.636 52.381 1.61 0.00 34.84 3.46
543 546 2.026449 CAGGATCTCAAAGGCACCTTCT 60.026 50.000 1.61 0.00 34.84 2.85
544 547 2.646798 AGGATCTCAAAGGCACCTTCTT 59.353 45.455 1.61 0.00 34.84 2.52
545 548 3.075134 AGGATCTCAAAGGCACCTTCTTT 59.925 43.478 1.61 0.00 34.84 2.52
546 549 3.829026 GGATCTCAAAGGCACCTTCTTTT 59.171 43.478 1.61 0.00 34.84 2.27
547 550 4.281941 GGATCTCAAAGGCACCTTCTTTTT 59.718 41.667 1.61 0.00 34.84 1.94
845 848 1.891919 GCTGGTTGCGTTGGACAGA 60.892 57.895 0.00 0.00 0.00 3.41
870 879 5.473162 TGGAAGTTTGGAACTCATGTACATG 59.527 40.000 26.83 26.83 41.91 3.21
896 906 4.961511 GTCGCGCCACACACCTCA 62.962 66.667 0.00 0.00 0.00 3.86
897 907 4.662961 TCGCGCCACACACCTCAG 62.663 66.667 0.00 0.00 0.00 3.35
928 939 2.557490 GGCTACCTATAGAGTGGAACCG 59.443 54.545 0.00 0.00 37.80 4.44
946 958 3.324207 GGCTTTGAAGTCGGGAACT 57.676 52.632 0.00 0.00 41.10 3.01
1021 1046 1.475403 ATATATAGGCCGCGTCTGCT 58.525 50.000 4.92 0.00 39.65 4.24
1080 1107 4.081406 TCCAACTGTTTCGTAGCTACCTA 58.919 43.478 18.16 3.89 0.00 3.08
1105 1137 0.894141 AGTCAGTCAGCTGCTCGAAT 59.106 50.000 9.47 0.78 42.29 3.34
1185 1223 0.834612 CCCATCCTTACCGGTAAGCA 59.165 55.000 38.22 30.35 40.79 3.91
1293 1331 2.709475 GTGCAATCCATCGGCGTC 59.291 61.111 6.85 0.00 0.00 5.19
1355 1393 1.512926 GTGGTGCAGTTCTACCAGTG 58.487 55.000 0.00 0.00 46.87 3.66
1569 1607 2.676471 GCCGGCAACAAGGTGGAT 60.676 61.111 24.80 0.00 0.00 3.41
1575 1613 1.603455 CAACAAGGTGGATGGCGGT 60.603 57.895 0.00 0.00 0.00 5.68
1594 1632 1.215647 GACACGCGGAACATCCTCT 59.784 57.895 12.47 0.00 33.30 3.69
1595 1633 0.454600 GACACGCGGAACATCCTCTA 59.545 55.000 12.47 0.00 33.30 2.43
1598 1636 1.364171 CGCGGAACATCCTCTAGGG 59.636 63.158 0.00 0.00 33.30 3.53
1599 1637 1.392710 CGCGGAACATCCTCTAGGGT 61.393 60.000 0.00 0.00 33.30 4.34
1600 1638 0.389757 GCGGAACATCCTCTAGGGTC 59.610 60.000 0.00 0.00 33.30 4.46
1601 1639 1.776662 CGGAACATCCTCTAGGGTCA 58.223 55.000 0.00 0.00 33.30 4.02
1602 1640 2.320781 CGGAACATCCTCTAGGGTCAT 58.679 52.381 0.00 0.00 33.30 3.06
1603 1641 2.297597 CGGAACATCCTCTAGGGTCATC 59.702 54.545 0.00 0.00 33.30 2.92
1604 1642 3.582164 GGAACATCCTCTAGGGTCATCT 58.418 50.000 0.00 0.00 36.25 2.90
1605 1643 3.970640 GGAACATCCTCTAGGGTCATCTT 59.029 47.826 0.00 0.00 36.25 2.40
1606 1644 4.202305 GGAACATCCTCTAGGGTCATCTTG 60.202 50.000 0.00 0.00 36.25 3.02
1607 1645 4.271807 ACATCCTCTAGGGTCATCTTGA 57.728 45.455 0.00 0.00 36.25 3.02
1608 1646 3.964031 ACATCCTCTAGGGTCATCTTGAC 59.036 47.826 0.00 0.00 46.23 3.18
1615 1653 3.474806 GTCATCTTGACCGCGGTG 58.525 61.111 39.65 22.53 41.37 4.94
1616 1654 2.100631 GTCATCTTGACCGCGGTGG 61.101 63.158 39.65 24.43 41.37 4.61
1617 1655 2.264480 CATCTTGACCGCGGTGGA 59.736 61.111 39.65 28.66 42.00 4.02
1618 1656 2.100631 CATCTTGACCGCGGTGGAC 61.101 63.158 39.65 22.72 42.00 4.02
1633 1671 2.050714 GACACCTTGACGTCGCGA 60.051 61.111 3.71 3.71 0.00 5.87
1634 1672 2.354305 ACACCTTGACGTCGCGAC 60.354 61.111 28.96 28.96 0.00 5.19
1697 1735 2.125552 CCGCGGTCAAGATGAGCA 60.126 61.111 19.50 0.00 44.51 4.26
1704 1742 1.649664 GTCAAGATGAGCATGCTCGT 58.350 50.000 36.60 36.60 45.48 4.18
2188 2226 4.451241 CATGCGAGGAGGATGGTG 57.549 61.111 0.00 0.00 43.85 4.17
2189 2227 1.227764 CATGCGAGGAGGATGGTGG 60.228 63.158 0.00 0.00 43.85 4.61
2190 2228 1.690633 ATGCGAGGAGGATGGTGGT 60.691 57.895 0.00 0.00 0.00 4.16
2191 2229 1.976132 ATGCGAGGAGGATGGTGGTG 61.976 60.000 0.00 0.00 0.00 4.17
2192 2230 2.903357 CGAGGAGGATGGTGGTGG 59.097 66.667 0.00 0.00 0.00 4.61
2193 2231 2.735772 CGAGGAGGATGGTGGTGGG 61.736 68.421 0.00 0.00 0.00 4.61
2194 2232 2.286425 AGGAGGATGGTGGTGGGG 60.286 66.667 0.00 0.00 0.00 4.96
2195 2233 3.420482 GGAGGATGGTGGTGGGGG 61.420 72.222 0.00 0.00 0.00 5.40
2210 2248 4.447342 GGGGGCTGATGGTGGTGG 62.447 72.222 0.00 0.00 0.00 4.61
2215 2253 4.802051 CTGATGGTGGTGGCGGGG 62.802 72.222 0.00 0.00 0.00 5.73
2217 2255 3.809013 GATGGTGGTGGCGGGGAT 61.809 66.667 0.00 0.00 0.00 3.85
2218 2256 4.127744 ATGGTGGTGGCGGGGATG 62.128 66.667 0.00 0.00 0.00 3.51
2220 2258 3.809013 GGTGGTGGCGGGGATGAT 61.809 66.667 0.00 0.00 0.00 2.45
2221 2259 2.516930 GTGGTGGCGGGGATGATG 60.517 66.667 0.00 0.00 0.00 3.07
2222 2260 3.807839 TGGTGGCGGGGATGATGG 61.808 66.667 0.00 0.00 0.00 3.51
2223 2261 3.809013 GGTGGCGGGGATGATGGT 61.809 66.667 0.00 0.00 0.00 3.55
2224 2262 2.516930 GTGGCGGGGATGATGGTG 60.517 66.667 0.00 0.00 0.00 4.17
2225 2263 4.504596 TGGCGGGGATGATGGTGC 62.505 66.667 0.00 0.00 0.00 5.01
2226 2264 4.195334 GGCGGGGATGATGGTGCT 62.195 66.667 0.00 0.00 0.00 4.40
2227 2265 2.903855 GCGGGGATGATGGTGCTG 60.904 66.667 0.00 0.00 0.00 4.41
2228 2266 2.203252 CGGGGATGATGGTGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
2229 2267 2.520260 GGGGATGATGGTGCTGGC 60.520 66.667 0.00 0.00 0.00 4.85
2230 2268 2.903855 GGGATGATGGTGCTGGCG 60.904 66.667 0.00 0.00 0.00 5.69
2231 2269 2.903855 GGATGATGGTGCTGGCGG 60.904 66.667 0.00 0.00 0.00 6.13
2232 2270 2.124570 GATGATGGTGCTGGCGGT 60.125 61.111 0.00 0.00 0.00 5.68
2233 2271 2.438975 ATGATGGTGCTGGCGGTG 60.439 61.111 0.00 0.00 0.00 4.94
2234 2272 2.874648 GATGATGGTGCTGGCGGTGA 62.875 60.000 0.00 0.00 0.00 4.02
2235 2273 2.821366 GATGGTGCTGGCGGTGAG 60.821 66.667 0.00 0.00 0.00 3.51
2236 2274 4.415150 ATGGTGCTGGCGGTGAGG 62.415 66.667 0.00 0.00 0.00 3.86
2242 2280 4.722700 CTGGCGGTGAGGGGGTTG 62.723 72.222 0.00 0.00 0.00 3.77
2246 2284 4.278513 CGGTGAGGGGGTTGGCAA 62.279 66.667 0.00 0.00 0.00 4.52
2247 2285 2.600470 GGTGAGGGGGTTGGCAAC 60.600 66.667 21.92 21.92 0.00 4.17
2259 2297 3.137687 GGCAACAACAAGGGGTGG 58.862 61.111 0.00 0.00 0.00 4.61
2260 2298 2.421314 GCAACAACAAGGGGTGGC 59.579 61.111 0.00 0.00 0.00 5.01
2261 2299 2.133641 GCAACAACAAGGGGTGGCT 61.134 57.895 0.00 0.00 0.00 4.75
2262 2300 1.741525 CAACAACAAGGGGTGGCTG 59.258 57.895 0.00 0.00 0.00 4.85
2263 2301 2.133641 AACAACAAGGGGTGGCTGC 61.134 57.895 0.00 0.00 0.00 5.25
2264 2302 2.521465 CAACAAGGGGTGGCTGCA 60.521 61.111 0.50 0.00 0.00 4.41
2265 2303 1.909781 CAACAAGGGGTGGCTGCAT 60.910 57.895 0.50 0.00 0.00 3.96
2266 2304 1.909781 AACAAGGGGTGGCTGCATG 60.910 57.895 0.50 0.00 0.00 4.06
2267 2305 3.072468 CAAGGGGTGGCTGCATGG 61.072 66.667 0.50 0.00 0.00 3.66
2268 2306 3.593680 AAGGGGTGGCTGCATGGT 61.594 61.111 0.50 0.00 0.00 3.55
2269 2307 2.237965 AAGGGGTGGCTGCATGGTA 61.238 57.895 0.50 0.00 0.00 3.25
2270 2308 1.799157 AAGGGGTGGCTGCATGGTAA 61.799 55.000 0.50 0.00 0.00 2.85
2271 2309 1.076044 GGGGTGGCTGCATGGTAAT 60.076 57.895 0.50 0.00 0.00 1.89
2272 2310 1.394266 GGGGTGGCTGCATGGTAATG 61.394 60.000 0.50 0.00 36.82 1.90
2284 2322 4.533919 CATGGTAATGCAAAACTCCCAA 57.466 40.909 0.00 0.00 0.00 4.12
2285 2323 4.892433 CATGGTAATGCAAAACTCCCAAA 58.108 39.130 0.00 0.00 0.00 3.28
2286 2324 4.599047 TGGTAATGCAAAACTCCCAAAG 57.401 40.909 0.00 0.00 0.00 2.77
2287 2325 3.244044 TGGTAATGCAAAACTCCCAAAGC 60.244 43.478 0.00 0.00 0.00 3.51
2288 2326 3.244044 GGTAATGCAAAACTCCCAAAGCA 60.244 43.478 0.00 0.00 36.34 3.91
2289 2327 2.825861 ATGCAAAACTCCCAAAGCAG 57.174 45.000 0.00 0.00 35.26 4.24
2290 2328 1.774110 TGCAAAACTCCCAAAGCAGA 58.226 45.000 0.00 0.00 0.00 4.26
2291 2329 2.318908 TGCAAAACTCCCAAAGCAGAT 58.681 42.857 0.00 0.00 0.00 2.90
2292 2330 2.699846 TGCAAAACTCCCAAAGCAGATT 59.300 40.909 0.00 0.00 0.00 2.40
2293 2331 3.243839 TGCAAAACTCCCAAAGCAGATTC 60.244 43.478 0.00 0.00 0.00 2.52
2294 2332 3.862264 GCAAAACTCCCAAAGCAGATTCC 60.862 47.826 0.00 0.00 0.00 3.01
2295 2333 3.532641 AAACTCCCAAAGCAGATTCCT 57.467 42.857 0.00 0.00 0.00 3.36
2296 2334 2.503895 ACTCCCAAAGCAGATTCCTG 57.496 50.000 0.00 0.00 43.22 3.86
2304 2342 4.528674 CAGATTCCTGCCACCGAG 57.471 61.111 0.00 0.00 33.07 4.63
2305 2343 1.153289 CAGATTCCTGCCACCGAGG 60.153 63.158 0.00 0.00 41.84 4.63
2306 2344 1.306141 AGATTCCTGCCACCGAGGA 60.306 57.895 0.00 0.00 41.22 3.71
2307 2345 1.153349 GATTCCTGCCACCGAGGAC 60.153 63.158 0.00 0.00 39.44 3.85
2308 2346 2.595009 GATTCCTGCCACCGAGGACC 62.595 65.000 0.00 0.00 39.44 4.46
2309 2347 4.631740 TCCTGCCACCGAGGACCA 62.632 66.667 0.00 0.00 41.22 4.02
2310 2348 4.087892 CCTGCCACCGAGGACCAG 62.088 72.222 0.00 0.00 41.22 4.00
2311 2349 2.997315 CTGCCACCGAGGACCAGA 60.997 66.667 0.00 0.00 41.22 3.86
2312 2350 2.525629 TGCCACCGAGGACCAGAA 60.526 61.111 0.00 0.00 41.22 3.02
2313 2351 2.047179 GCCACCGAGGACCAGAAC 60.047 66.667 0.00 0.00 41.22 3.01
2314 2352 2.584391 GCCACCGAGGACCAGAACT 61.584 63.158 0.00 0.00 41.22 3.01
2315 2353 1.293498 CCACCGAGGACCAGAACTG 59.707 63.158 0.00 0.00 41.22 3.16
2347 2385 2.369394 CCATGGGGAAAGAGTAAGTGC 58.631 52.381 2.85 0.00 35.59 4.40
2348 2386 2.369394 CATGGGGAAAGAGTAAGTGCC 58.631 52.381 0.00 0.00 0.00 5.01
2349 2387 1.440618 TGGGGAAAGAGTAAGTGCCA 58.559 50.000 0.00 0.00 0.00 4.92
2350 2388 1.073284 TGGGGAAAGAGTAAGTGCCAC 59.927 52.381 0.00 0.00 0.00 5.01
2351 2389 1.351350 GGGGAAAGAGTAAGTGCCACT 59.649 52.381 0.00 0.00 0.00 4.00
2352 2390 2.224793 GGGGAAAGAGTAAGTGCCACTT 60.225 50.000 15.44 15.44 41.97 3.16
2353 2391 3.487372 GGGAAAGAGTAAGTGCCACTTT 58.513 45.455 16.40 0.00 39.51 2.66
2354 2392 4.506095 GGGGAAAGAGTAAGTGCCACTTTA 60.506 45.833 16.40 0.00 39.51 1.85
2355 2393 5.254115 GGGAAAGAGTAAGTGCCACTTTAT 58.746 41.667 16.40 4.63 39.51 1.40
2356 2394 6.412214 GGGAAAGAGTAAGTGCCACTTTATA 58.588 40.000 16.40 0.00 39.51 0.98
2357 2395 6.882678 GGGAAAGAGTAAGTGCCACTTTATAA 59.117 38.462 16.40 0.00 39.51 0.98
2358 2396 7.556635 GGGAAAGAGTAAGTGCCACTTTATAAT 59.443 37.037 16.40 0.00 39.51 1.28
2359 2397 9.609346 GGAAAGAGTAAGTGCCACTTTATAATA 57.391 33.333 16.40 0.00 39.51 0.98
2382 2420 9.995003 AATAATTTTATTCCTTTGCTTGTCACA 57.005 25.926 0.00 0.00 0.00 3.58
2384 2422 7.894376 ATTTTATTCCTTTGCTTGTCACATG 57.106 32.000 0.00 0.00 0.00 3.21
2385 2423 2.798976 TTCCTTTGCTTGTCACATGC 57.201 45.000 8.73 8.73 35.51 4.06
2386 2424 1.985473 TCCTTTGCTTGTCACATGCT 58.015 45.000 16.07 0.00 35.87 3.79
2387 2425 2.309613 TCCTTTGCTTGTCACATGCTT 58.690 42.857 16.07 0.00 35.87 3.91
2388 2426 3.485394 TCCTTTGCTTGTCACATGCTTA 58.515 40.909 16.07 2.61 35.87 3.09
2389 2427 4.081406 TCCTTTGCTTGTCACATGCTTAT 58.919 39.130 16.07 0.00 35.87 1.73
2390 2428 5.252547 TCCTTTGCTTGTCACATGCTTATA 58.747 37.500 16.07 0.00 35.87 0.98
2391 2429 5.887598 TCCTTTGCTTGTCACATGCTTATAT 59.112 36.000 16.07 0.00 35.87 0.86
2392 2430 6.377996 TCCTTTGCTTGTCACATGCTTATATT 59.622 34.615 16.07 0.00 35.87 1.28
2393 2431 7.037438 CCTTTGCTTGTCACATGCTTATATTT 58.963 34.615 16.07 0.00 35.87 1.40
2394 2432 7.546667 CCTTTGCTTGTCACATGCTTATATTTT 59.453 33.333 16.07 0.00 35.87 1.82
2395 2433 8.830201 TTTGCTTGTCACATGCTTATATTTTT 57.170 26.923 16.07 0.00 35.87 1.94
2396 2434 8.464770 TTGCTTGTCACATGCTTATATTTTTC 57.535 30.769 16.07 0.00 35.87 2.29
2397 2435 7.829725 TGCTTGTCACATGCTTATATTTTTCT 58.170 30.769 16.07 0.00 35.87 2.52
2398 2436 8.306038 TGCTTGTCACATGCTTATATTTTTCTT 58.694 29.630 16.07 0.00 35.87 2.52
2399 2437 9.143631 GCTTGTCACATGCTTATATTTTTCTTT 57.856 29.630 8.41 0.00 32.80 2.52
2417 2455 6.768029 TTCTTTATTTTGCTTGTCACATGC 57.232 33.333 8.73 8.73 35.51 4.06
2418 2456 6.088016 TCTTTATTTTGCTTGTCACATGCT 57.912 33.333 16.07 0.00 35.87 3.79
2419 2457 7.213216 TCTTTATTTTGCTTGTCACATGCTA 57.787 32.000 16.07 6.47 35.87 3.49
2420 2458 7.656412 TCTTTATTTTGCTTGTCACATGCTAA 58.344 30.769 16.07 12.05 35.87 3.09
2421 2459 8.306038 TCTTTATTTTGCTTGTCACATGCTAAT 58.694 29.630 16.07 15.82 35.87 1.73
2422 2460 9.571810 CTTTATTTTGCTTGTCACATGCTAATA 57.428 29.630 16.07 15.02 35.87 0.98
2426 2464 8.464770 TTTTGCTTGTCACATGCTAATATTTC 57.535 30.769 16.07 0.00 35.87 2.17
2427 2465 6.756299 TGCTTGTCACATGCTAATATTTCA 57.244 33.333 16.07 0.00 35.87 2.69
2428 2466 7.337480 TGCTTGTCACATGCTAATATTTCAT 57.663 32.000 16.07 0.00 35.87 2.57
2429 2467 7.774134 TGCTTGTCACATGCTAATATTTCATT 58.226 30.769 16.07 0.00 35.87 2.57
2430 2468 7.916977 TGCTTGTCACATGCTAATATTTCATTC 59.083 33.333 16.07 0.00 35.87 2.67
2431 2469 8.133627 GCTTGTCACATGCTAATATTTCATTCT 58.866 33.333 8.41 0.00 32.80 2.40
2436 2474 9.304731 TCACATGCTAATATTTCATTCTTTTGC 57.695 29.630 0.00 0.00 0.00 3.68
2437 2475 9.089601 CACATGCTAATATTTCATTCTTTTGCA 57.910 29.630 0.00 0.00 33.82 4.08
2438 2476 9.309516 ACATGCTAATATTTCATTCTTTTGCAG 57.690 29.630 0.00 0.00 33.07 4.41
2439 2477 7.760131 TGCTAATATTTCATTCTTTTGCAGC 57.240 32.000 0.00 0.00 0.00 5.25
2440 2478 7.321908 TGCTAATATTTCATTCTTTTGCAGCA 58.678 30.769 0.00 0.00 0.00 4.41
2441 2479 7.818446 TGCTAATATTTCATTCTTTTGCAGCAA 59.182 29.630 2.83 2.83 30.51 3.91
2442 2480 8.823818 GCTAATATTTCATTCTTTTGCAGCAAT 58.176 29.630 9.12 0.00 0.00 3.56
2445 2483 5.676532 TTTCATTCTTTTGCAGCAATTGG 57.323 34.783 9.12 2.55 0.00 3.16
2446 2484 4.603989 TCATTCTTTTGCAGCAATTGGA 57.396 36.364 9.12 4.97 0.00 3.53
2447 2485 4.309099 TCATTCTTTTGCAGCAATTGGAC 58.691 39.130 9.12 0.00 0.00 4.02
2448 2486 3.815856 TTCTTTTGCAGCAATTGGACA 57.184 38.095 9.12 0.00 0.00 4.02
2449 2487 4.339872 TTCTTTTGCAGCAATTGGACAT 57.660 36.364 9.12 0.00 0.00 3.06
2450 2488 5.465532 TTCTTTTGCAGCAATTGGACATA 57.534 34.783 9.12 0.00 0.00 2.29
2451 2489 5.664294 TCTTTTGCAGCAATTGGACATAT 57.336 34.783 9.12 0.00 0.00 1.78
2452 2490 5.653507 TCTTTTGCAGCAATTGGACATATC 58.346 37.500 9.12 0.00 0.00 1.63
2453 2491 4.389890 TTTGCAGCAATTGGACATATCC 57.610 40.909 9.12 0.00 46.48 2.59
2454 2492 3.301794 TGCAGCAATTGGACATATCCT 57.698 42.857 7.72 0.00 46.43 3.24
2455 2493 4.436113 TGCAGCAATTGGACATATCCTA 57.564 40.909 7.72 0.00 46.43 2.94
2456 2494 4.790937 TGCAGCAATTGGACATATCCTAA 58.209 39.130 7.72 0.00 46.43 2.69
2457 2495 5.199723 TGCAGCAATTGGACATATCCTAAA 58.800 37.500 7.72 0.00 46.43 1.85
2458 2496 5.300034 TGCAGCAATTGGACATATCCTAAAG 59.700 40.000 7.72 0.00 46.43 1.85
2459 2497 5.278660 GCAGCAATTGGACATATCCTAAAGG 60.279 44.000 7.72 0.00 46.43 3.11
2460 2498 5.242393 CAGCAATTGGACATATCCTAAAGGG 59.758 44.000 7.72 0.00 46.43 3.95
2461 2499 4.524328 GCAATTGGACATATCCTAAAGGGG 59.476 45.833 7.72 0.00 46.43 4.79
2462 2500 3.876309 TTGGACATATCCTAAAGGGGC 57.124 47.619 0.00 0.00 46.43 5.80
2463 2501 2.062636 TGGACATATCCTAAAGGGGCC 58.937 52.381 0.00 0.00 46.43 5.80
2464 2502 1.354705 GGACATATCCTAAAGGGGCCC 59.645 57.143 17.12 17.12 42.45 5.80
2465 2503 1.003233 GACATATCCTAAAGGGGCCCG 59.997 57.143 18.95 1.73 35.41 6.13
2466 2504 1.064825 CATATCCTAAAGGGGCCCGT 58.935 55.000 18.95 15.12 35.41 5.28
2467 2505 2.262637 CATATCCTAAAGGGGCCCGTA 58.737 52.381 19.43 12.87 35.41 4.02
2468 2506 2.727429 TATCCTAAAGGGGCCCGTAT 57.273 50.000 19.43 9.73 35.41 3.06
2469 2507 1.829138 ATCCTAAAGGGGCCCGTATT 58.171 50.000 19.43 16.15 35.41 1.89
2470 2508 1.134228 TCCTAAAGGGGCCCGTATTC 58.866 55.000 19.43 1.21 35.41 1.75
2471 2509 0.109913 CCTAAAGGGGCCCGTATTCC 59.890 60.000 19.43 0.32 0.00 3.01
2472 2510 0.250166 CTAAAGGGGCCCGTATTCCG 60.250 60.000 19.43 5.42 0.00 4.30
2473 2511 0.690411 TAAAGGGGCCCGTATTCCGA 60.690 55.000 19.43 0.00 39.56 4.55
2474 2512 1.564483 AAAGGGGCCCGTATTCCGAA 61.564 55.000 19.43 0.00 39.56 4.30
2475 2513 2.203112 GGGGCCCGTATTCCGAAC 60.203 66.667 17.79 0.00 39.56 3.95
2476 2514 2.586914 GGGCCCGTATTCCGAACG 60.587 66.667 5.69 0.00 39.56 3.95
2481 2519 4.008035 CGTATTCCGAACGGCCTC 57.992 61.111 8.48 0.00 39.56 4.70
2482 2520 1.140161 CGTATTCCGAACGGCCTCA 59.860 57.895 8.48 0.00 39.56 3.86
2483 2521 0.249322 CGTATTCCGAACGGCCTCAT 60.249 55.000 8.48 1.22 39.56 2.90
2484 2522 1.499049 GTATTCCGAACGGCCTCATC 58.501 55.000 8.48 0.00 34.68 2.92
2485 2523 1.116308 TATTCCGAACGGCCTCATCA 58.884 50.000 8.48 0.00 34.68 3.07
2486 2524 0.462047 ATTCCGAACGGCCTCATCAC 60.462 55.000 8.48 0.00 34.68 3.06
2487 2525 2.511600 CCGAACGGCCTCATCACC 60.512 66.667 0.00 0.00 0.00 4.02
2492 2530 2.579201 CGGCCTCATCACCGTCTT 59.421 61.111 0.00 0.00 44.46 3.01
2493 2531 1.811266 CGGCCTCATCACCGTCTTG 60.811 63.158 0.00 0.00 44.46 3.02
2494 2532 2.109126 GGCCTCATCACCGTCTTGC 61.109 63.158 0.00 0.00 0.00 4.01
2495 2533 1.078848 GCCTCATCACCGTCTTGCT 60.079 57.895 0.00 0.00 0.00 3.91
2496 2534 1.364626 GCCTCATCACCGTCTTGCTG 61.365 60.000 0.00 0.00 0.00 4.41
2497 2535 0.247460 CCTCATCACCGTCTTGCTGA 59.753 55.000 0.00 0.00 0.00 4.26
2498 2536 1.338105 CCTCATCACCGTCTTGCTGAA 60.338 52.381 0.00 0.00 0.00 3.02
2499 2537 1.998315 CTCATCACCGTCTTGCTGAAG 59.002 52.381 0.00 0.00 0.00 3.02
2500 2538 1.618343 TCATCACCGTCTTGCTGAAGA 59.382 47.619 0.00 0.00 35.75 2.87
2501 2539 2.234661 TCATCACCGTCTTGCTGAAGAT 59.765 45.455 0.00 0.00 40.40 2.40
2502 2540 3.447229 TCATCACCGTCTTGCTGAAGATA 59.553 43.478 0.00 0.00 40.40 1.98
2503 2541 4.100035 TCATCACCGTCTTGCTGAAGATAT 59.900 41.667 0.00 0.00 40.40 1.63
2504 2542 5.301805 TCATCACCGTCTTGCTGAAGATATA 59.698 40.000 0.00 0.00 40.40 0.86
2505 2543 4.933330 TCACCGTCTTGCTGAAGATATAC 58.067 43.478 0.00 0.00 40.40 1.47
2506 2544 4.645136 TCACCGTCTTGCTGAAGATATACT 59.355 41.667 0.00 0.00 40.40 2.12
2507 2545 5.127194 TCACCGTCTTGCTGAAGATATACTT 59.873 40.000 0.00 0.00 40.40 2.24
2508 2546 5.233050 CACCGTCTTGCTGAAGATATACTTG 59.767 44.000 0.00 0.00 40.40 3.16
2509 2547 4.210120 CCGTCTTGCTGAAGATATACTTGC 59.790 45.833 0.00 0.00 40.40 4.01
2510 2548 4.210120 CGTCTTGCTGAAGATATACTTGCC 59.790 45.833 0.00 0.00 40.40 4.52
2511 2549 4.210120 GTCTTGCTGAAGATATACTTGCCG 59.790 45.833 0.00 0.00 40.40 5.69
2512 2550 3.111853 TGCTGAAGATATACTTGCCGG 57.888 47.619 0.00 0.00 39.13 6.13
2513 2551 2.224281 TGCTGAAGATATACTTGCCGGG 60.224 50.000 2.18 0.00 39.13 5.73
2514 2552 2.872038 GCTGAAGATATACTTGCCGGGG 60.872 54.545 2.18 0.00 39.13 5.73
2515 2553 1.071699 TGAAGATATACTTGCCGGGGC 59.928 52.381 2.18 1.86 39.13 5.80
2516 2554 1.348036 GAAGATATACTTGCCGGGGCT 59.652 52.381 11.55 0.00 42.51 5.19
2517 2555 0.687354 AGATATACTTGCCGGGGCTG 59.313 55.000 11.55 6.50 42.51 4.85
2518 2556 0.396811 GATATACTTGCCGGGGCTGT 59.603 55.000 11.55 11.84 42.51 4.40
2519 2557 1.621814 GATATACTTGCCGGGGCTGTA 59.378 52.381 11.55 13.50 42.51 2.74
2520 2558 0.754472 TATACTTGCCGGGGCTGTAC 59.246 55.000 11.55 0.00 42.51 2.90
2521 2559 0.981277 ATACTTGCCGGGGCTGTACT 60.981 55.000 11.55 3.04 42.51 2.73
2522 2560 0.324552 TACTTGCCGGGGCTGTACTA 60.325 55.000 11.55 0.00 42.51 1.82
2523 2561 0.981277 ACTTGCCGGGGCTGTACTAT 60.981 55.000 11.55 0.00 42.51 2.12
2524 2562 0.249911 CTTGCCGGGGCTGTACTATC 60.250 60.000 11.55 0.00 42.51 2.08
2525 2563 1.692173 TTGCCGGGGCTGTACTATCC 61.692 60.000 11.55 0.00 42.51 2.59
2526 2564 3.048602 CCGGGGCTGTACTATCCG 58.951 66.667 0.00 9.41 40.32 4.18
2527 2565 3.048602 CGGGGCTGTACTATCCGG 58.951 66.667 0.00 0.00 37.35 5.14
2528 2566 1.529948 CGGGGCTGTACTATCCGGA 60.530 63.158 6.61 6.61 37.35 5.14
2529 2567 0.898789 CGGGGCTGTACTATCCGGAT 60.899 60.000 22.95 22.95 37.35 4.18
2530 2568 0.896226 GGGGCTGTACTATCCGGATC 59.104 60.000 23.08 7.11 0.00 3.36
2531 2569 0.896226 GGGCTGTACTATCCGGATCC 59.104 60.000 23.08 13.94 0.00 3.36
2532 2570 1.629043 GGCTGTACTATCCGGATCCA 58.371 55.000 23.08 12.51 0.00 3.41
2533 2571 1.546476 GGCTGTACTATCCGGATCCAG 59.454 57.143 23.08 21.43 0.00 3.86
2534 2572 2.240279 GCTGTACTATCCGGATCCAGT 58.760 52.381 23.08 21.71 0.00 4.00
2535 2573 2.229302 GCTGTACTATCCGGATCCAGTC 59.771 54.545 23.08 13.53 0.00 3.51
2536 2574 3.487372 CTGTACTATCCGGATCCAGTCA 58.513 50.000 23.08 16.86 0.00 3.41
2537 2575 3.487372 TGTACTATCCGGATCCAGTCAG 58.513 50.000 23.08 14.23 0.00 3.51
2538 2576 2.002505 ACTATCCGGATCCAGTCAGG 57.997 55.000 23.08 4.27 42.86 3.86
2539 2577 0.605589 CTATCCGGATCCAGTCAGGC 59.394 60.000 23.08 0.00 41.44 4.85
2540 2578 0.105709 TATCCGGATCCAGTCAGGCA 60.106 55.000 23.08 0.00 41.44 4.75
2541 2579 1.690219 ATCCGGATCCAGTCAGGCAC 61.690 60.000 12.38 0.00 41.44 5.01
2542 2580 2.187946 CGGATCCAGTCAGGCACC 59.812 66.667 13.41 0.00 37.29 5.01
2543 2581 2.592308 GGATCCAGTCAGGCACCC 59.408 66.667 6.95 0.00 37.29 4.61
2544 2582 2.187946 GATCCAGTCAGGCACCCG 59.812 66.667 0.00 0.00 37.29 5.28
2545 2583 3.391665 GATCCAGTCAGGCACCCGG 62.392 68.421 0.00 0.00 37.29 5.73
2546 2584 3.924013 ATCCAGTCAGGCACCCGGA 62.924 63.158 0.73 0.00 37.29 5.14
2547 2585 4.394712 CCAGTCAGGCACCCGGAC 62.395 72.222 0.73 6.45 46.38 4.79
2566 2604 2.909965 GCCTGGTTTTGGCCACGA 60.910 61.111 3.88 0.00 44.32 4.35
2567 2605 2.919494 GCCTGGTTTTGGCCACGAG 61.919 63.158 3.88 0.00 44.32 4.18
2568 2606 2.644992 CTGGTTTTGGCCACGAGC 59.355 61.111 3.88 7.44 42.60 5.03
2569 2607 1.898574 CTGGTTTTGGCCACGAGCT 60.899 57.895 3.88 0.00 43.05 4.09
2570 2608 2.133742 CTGGTTTTGGCCACGAGCTG 62.134 60.000 3.88 7.09 43.05 4.24
2571 2609 2.644992 GTTTTGGCCACGAGCTGG 59.355 61.111 3.88 0.00 44.08 4.85
2572 2610 1.896660 GTTTTGGCCACGAGCTGGA 60.897 57.895 3.88 0.00 43.95 3.86
2577 2615 4.008933 GCCACGAGCTGGACCACT 62.009 66.667 1.44 0.00 43.95 4.00
2578 2616 2.047844 CCACGAGCTGGACCACTG 60.048 66.667 1.44 0.00 43.95 3.66
2579 2617 2.047844 CACGAGCTGGACCACTGG 60.048 66.667 1.44 0.00 0.00 4.00
2580 2618 3.314331 ACGAGCTGGACCACTGGG 61.314 66.667 1.44 0.00 41.29 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.591792 CCTTTTCTTTTCTCATTCTGTTTTCTT 57.408 29.630 0.00 0.00 0.00 2.52
21 22 7.708322 GCCTTTTCTTTTCTCATTCTGTTTTCT 59.292 33.333 0.00 0.00 0.00 2.52
22 23 7.492344 TGCCTTTTCTTTTCTCATTCTGTTTTC 59.508 33.333 0.00 0.00 0.00 2.29
23 24 7.330262 TGCCTTTTCTTTTCTCATTCTGTTTT 58.670 30.769 0.00 0.00 0.00 2.43
24 25 6.877236 TGCCTTTTCTTTTCTCATTCTGTTT 58.123 32.000 0.00 0.00 0.00 2.83
25 26 6.469782 TGCCTTTTCTTTTCTCATTCTGTT 57.530 33.333 0.00 0.00 0.00 3.16
26 27 6.127366 TGTTGCCTTTTCTTTTCTCATTCTGT 60.127 34.615 0.00 0.00 0.00 3.41
27 28 6.275335 TGTTGCCTTTTCTTTTCTCATTCTG 58.725 36.000 0.00 0.00 0.00 3.02
28 29 6.469782 TGTTGCCTTTTCTTTTCTCATTCT 57.530 33.333 0.00 0.00 0.00 2.40
29 30 7.538303 TTTGTTGCCTTTTCTTTTCTCATTC 57.462 32.000 0.00 0.00 0.00 2.67
30 31 7.390162 TGTTTTGTTGCCTTTTCTTTTCTCATT 59.610 29.630 0.00 0.00 0.00 2.57
31 32 6.878389 TGTTTTGTTGCCTTTTCTTTTCTCAT 59.122 30.769 0.00 0.00 0.00 2.90
32 33 6.226787 TGTTTTGTTGCCTTTTCTTTTCTCA 58.773 32.000 0.00 0.00 0.00 3.27
33 34 6.589907 TCTGTTTTGTTGCCTTTTCTTTTCTC 59.410 34.615 0.00 0.00 0.00 2.87
34 35 6.463360 TCTGTTTTGTTGCCTTTTCTTTTCT 58.537 32.000 0.00 0.00 0.00 2.52
35 36 6.720012 TCTGTTTTGTTGCCTTTTCTTTTC 57.280 33.333 0.00 0.00 0.00 2.29
36 37 7.390162 TCATTCTGTTTTGTTGCCTTTTCTTTT 59.610 29.630 0.00 0.00 0.00 2.27
37 38 6.878389 TCATTCTGTTTTGTTGCCTTTTCTTT 59.122 30.769 0.00 0.00 0.00 2.52
38 39 6.405538 TCATTCTGTTTTGTTGCCTTTTCTT 58.594 32.000 0.00 0.00 0.00 2.52
39 40 5.976458 TCATTCTGTTTTGTTGCCTTTTCT 58.024 33.333 0.00 0.00 0.00 2.52
40 41 6.660887 TTCATTCTGTTTTGTTGCCTTTTC 57.339 33.333 0.00 0.00 0.00 2.29
41 42 7.446001 TTTTCATTCTGTTTTGTTGCCTTTT 57.554 28.000 0.00 0.00 0.00 2.27
42 43 7.446001 TTTTTCATTCTGTTTTGTTGCCTTT 57.554 28.000 0.00 0.00 0.00 3.11
70 71 1.996798 CGGGGCTTCTGTCCTCTATA 58.003 55.000 0.00 0.00 38.23 1.31
72 73 2.058595 GCGGGGCTTCTGTCCTCTA 61.059 63.158 0.00 0.00 38.23 2.43
75 76 4.021925 GTGCGGGGCTTCTGTCCT 62.022 66.667 0.00 0.00 38.23 3.85
76 77 3.628646 ATGTGCGGGGCTTCTGTCC 62.629 63.158 0.00 0.00 37.19 4.02
79 80 3.136123 CCATGTGCGGGGCTTCTG 61.136 66.667 0.00 0.00 0.00 3.02
80 81 4.431131 CCCATGTGCGGGGCTTCT 62.431 66.667 0.00 0.00 43.21 2.85
102 103 0.102844 CCCATGTATGCGCTTTTGGG 59.897 55.000 18.09 18.09 38.01 4.12
106 107 0.466189 CTCCCCCATGTATGCGCTTT 60.466 55.000 9.73 0.00 0.00 3.51
107 108 1.149174 CTCCCCCATGTATGCGCTT 59.851 57.895 9.73 4.59 0.00 4.68
109 110 2.281761 CCTCCCCCATGTATGCGC 60.282 66.667 0.00 0.00 0.00 6.09
110 111 2.431683 CCCTCCCCCATGTATGCG 59.568 66.667 0.00 0.00 0.00 4.73
137 138 5.956642 TCCACACTTTTTAACTCGCTTTTT 58.043 33.333 0.00 0.00 0.00 1.94
143 144 5.334879 CCCATCTTCCACACTTTTTAACTCG 60.335 44.000 0.00 0.00 0.00 4.18
163 164 2.503356 GCATATCTCCTTCGATCCCCAT 59.497 50.000 0.00 0.00 0.00 4.00
164 165 1.902508 GCATATCTCCTTCGATCCCCA 59.097 52.381 0.00 0.00 0.00 4.96
165 166 1.134965 CGCATATCTCCTTCGATCCCC 60.135 57.143 0.00 0.00 0.00 4.81
171 172 3.085443 ACTTGACGCATATCTCCTTCG 57.915 47.619 0.00 0.00 0.00 3.79
172 173 5.009210 AGAGTACTTGACGCATATCTCCTTC 59.991 44.000 0.00 0.00 0.00 3.46
176 177 3.978217 GCAGAGTACTTGACGCATATCTC 59.022 47.826 0.00 0.00 0.00 2.75
186 187 2.548707 CCACAAGCAGCAGAGTACTTGA 60.549 50.000 8.46 0.00 41.59 3.02
190 191 2.093764 AGATCCACAAGCAGCAGAGTAC 60.094 50.000 0.00 0.00 0.00 2.73
191 192 2.093816 CAGATCCACAAGCAGCAGAGTA 60.094 50.000 0.00 0.00 0.00 2.59
211 212 2.364324 GGTGAGACCGATATAAGCCACA 59.636 50.000 0.00 0.00 0.00 4.17
224 225 4.113354 CGCTGTTTTATAGAGGTGAGACC 58.887 47.826 0.00 0.00 38.99 3.85
231 232 6.144080 CGTCCTATTTCGCTGTTTTATAGAGG 59.856 42.308 0.00 0.00 0.00 3.69
232 233 6.144080 CCGTCCTATTTCGCTGTTTTATAGAG 59.856 42.308 0.00 0.00 0.00 2.43
236 237 4.331717 CACCGTCCTATTTCGCTGTTTTAT 59.668 41.667 0.00 0.00 0.00 1.40
244 245 2.005971 AAGTCACCGTCCTATTTCGC 57.994 50.000 0.00 0.00 0.00 4.70
245 246 3.991773 TGAAAAGTCACCGTCCTATTTCG 59.008 43.478 0.00 0.00 0.00 3.46
246 247 5.875359 AGATGAAAAGTCACCGTCCTATTTC 59.125 40.000 0.00 0.00 36.31 2.17
249 250 4.466370 TCAGATGAAAAGTCACCGTCCTAT 59.534 41.667 0.00 0.00 36.31 2.57
266 267 6.546395 AGAAACCGATTCGATTTTTCAGATG 58.454 36.000 20.21 1.60 43.15 2.90
270 271 6.017440 AGTGAAGAAACCGATTCGATTTTTCA 60.017 34.615 20.21 19.08 43.15 2.69
285 286 5.841957 ATGCCATCCATTAGTGAAGAAAC 57.158 39.130 0.00 0.00 0.00 2.78
299 300 0.396811 AAGTACCCGCTATGCCATCC 59.603 55.000 0.00 0.00 0.00 3.51
304 305 6.221659 AGTTCTTATAAAGTACCCGCTATGC 58.778 40.000 0.00 0.00 30.00 3.14
309 310 4.505556 CCGAAGTTCTTATAAAGTACCCGC 59.494 45.833 0.56 0.00 30.00 6.13
310 311 5.045872 CCCGAAGTTCTTATAAAGTACCCG 58.954 45.833 0.56 0.00 30.00 5.28
316 317 7.052248 ACAATACCCCCGAAGTTCTTATAAAG 58.948 38.462 0.56 0.00 0.00 1.85
323 324 3.801307 AAACAATACCCCCGAAGTTCT 57.199 42.857 0.56 0.00 0.00 3.01
324 325 3.057104 CCAAAACAATACCCCCGAAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
331 332 1.179152 CCGTCCAAAACAATACCCCC 58.821 55.000 0.00 0.00 0.00 5.40
334 335 1.465777 CGGTCCGTCCAAAACAATACC 59.534 52.381 2.08 0.00 35.57 2.73
335 336 1.135888 GCGGTCCGTCCAAAACAATAC 60.136 52.381 13.94 0.00 35.57 1.89
337 338 1.520600 GGCGGTCCGTCCAAAACAAT 61.521 55.000 13.94 0.00 35.57 2.71
340 341 2.592287 TGGCGGTCCGTCCAAAAC 60.592 61.111 20.66 0.15 32.32 2.43
345 346 2.106683 CATTTCTGGCGGTCCGTCC 61.107 63.158 14.50 15.02 34.14 4.79
349 350 2.158957 TGTCTATCATTTCTGGCGGTCC 60.159 50.000 0.00 0.00 0.00 4.46
353 354 6.851222 ATAAAGTGTCTATCATTTCTGGCG 57.149 37.500 0.00 0.00 0.00 5.69
401 402 9.091784 AGACGATCATAATTCATACATATGCAC 57.908 33.333 1.58 0.00 33.76 4.57
417 420 8.617290 ACACAGTACATACATAGACGATCATA 57.383 34.615 0.00 0.00 0.00 2.15
418 421 7.511959 ACACAGTACATACATAGACGATCAT 57.488 36.000 0.00 0.00 0.00 2.45
419 422 6.937436 ACACAGTACATACATAGACGATCA 57.063 37.500 0.00 0.00 0.00 2.92
486 489 5.047847 CCTGAAGACTTGTCACGTTTCTTA 58.952 41.667 3.49 0.00 0.00 2.10
487 490 3.871594 CCTGAAGACTTGTCACGTTTCTT 59.128 43.478 3.49 0.00 0.00 2.52
489 492 2.544267 CCCTGAAGACTTGTCACGTTTC 59.456 50.000 3.49 0.00 0.00 2.78
490 493 2.561569 CCCTGAAGACTTGTCACGTTT 58.438 47.619 3.49 0.00 0.00 3.60
501 504 2.811317 CAGTCGCGCCCTGAAGAC 60.811 66.667 17.43 9.06 31.38 3.01
502 505 4.069232 CCAGTCGCGCCCTGAAGA 62.069 66.667 22.17 0.00 31.38 2.87
503 506 4.379243 ACCAGTCGCGCCCTGAAG 62.379 66.667 22.17 11.84 31.38 3.02
845 848 5.630121 TGTACATGAGTTCCAAACTTCCAT 58.370 37.500 0.00 0.00 43.03 3.41
897 907 3.876851 TATAGGTAGCCAGGTGCCCCC 62.877 61.905 0.00 0.00 42.71 5.40
898 908 0.473117 TATAGGTAGCCAGGTGCCCC 60.473 60.000 0.00 0.00 42.71 5.80
928 939 2.028385 TCTAGTTCCCGACTTCAAAGCC 60.028 50.000 0.00 0.00 39.86 4.35
946 958 5.407387 GCAAGTTCGTAGTTGGTCAATTCTA 59.593 40.000 11.04 0.00 35.61 2.10
1021 1046 3.492309 CCTTTTGCATGCAACTGTACCAA 60.492 43.478 31.99 19.79 35.46 3.67
1105 1137 0.173029 CAGCATTTTGCCGTGCCATA 59.827 50.000 0.00 0.00 46.52 2.74
1140 1178 4.351938 CTCCGACGACCAACGCCA 62.352 66.667 0.00 0.00 46.94 5.69
1185 1223 1.227853 GGAGTCGTGCTGGTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
1293 1331 3.197790 CCGAGCATCCCGTTGCAG 61.198 66.667 5.24 0.00 45.23 4.41
1416 1454 3.405093 GAGGATGATGCCGGTGCCA 62.405 63.158 1.90 0.00 36.33 4.92
1429 1467 0.761187 CCCACGTCCATGATGAGGAT 59.239 55.000 0.00 0.00 37.52 3.24
1430 1468 1.971505 GCCCACGTCCATGATGAGGA 61.972 60.000 0.00 0.00 32.36 3.71
1528 1566 2.126580 GTACTTGACGCGGACGCT 60.127 61.111 12.47 1.81 45.53 5.07
1561 1599 2.351276 GTCACCGCCATCCACCTT 59.649 61.111 0.00 0.00 0.00 3.50
1575 1613 1.080093 GAGGATGTTCCGCGTGTCA 60.080 57.895 4.92 0.58 42.75 3.58
1598 1636 2.100631 CCACCGCGGTCAAGATGAC 61.101 63.158 31.80 1.88 46.23 3.06
1599 1637 2.264480 CCACCGCGGTCAAGATGA 59.736 61.111 31.80 0.00 0.00 2.92
1600 1638 2.100631 GTCCACCGCGGTCAAGATG 61.101 63.158 31.80 16.59 35.57 2.90
1601 1639 2.264794 GTCCACCGCGGTCAAGAT 59.735 61.111 31.80 1.65 35.57 2.40
1602 1640 3.228017 TGTCCACCGCGGTCAAGA 61.228 61.111 31.80 22.56 35.57 3.02
1603 1641 3.041940 GTGTCCACCGCGGTCAAG 61.042 66.667 31.80 20.44 34.39 3.02
1604 1642 4.612412 GGTGTCCACCGCGGTCAA 62.612 66.667 31.80 17.23 42.29 3.18
1613 1651 2.308039 GCGACGTCAAGGTGTCCAC 61.308 63.158 17.16 0.00 0.00 4.02
1614 1652 2.028484 GCGACGTCAAGGTGTCCA 59.972 61.111 17.16 0.00 0.00 4.02
1615 1653 3.103911 CGCGACGTCAAGGTGTCC 61.104 66.667 17.16 0.00 0.00 4.02
1616 1654 2.050714 TCGCGACGTCAAGGTGTC 60.051 61.111 17.16 0.00 0.00 3.67
1617 1655 2.354305 GTCGCGACGTCAAGGTGT 60.354 61.111 25.19 0.00 0.00 4.16
1618 1656 3.103911 GGTCGCGACGTCAAGGTG 61.104 66.667 30.99 6.26 0.00 4.00
1640 1678 2.028484 GCGACGTCAAGGTGTCCA 59.972 61.111 17.16 0.00 0.00 4.02
1697 1735 3.069980 GCGAGGAGGACACGAGCAT 62.070 63.158 0.00 0.00 0.00 3.79
2170 2208 1.890979 CACCATCCTCCTCGCATGC 60.891 63.158 7.91 7.91 0.00 4.06
2171 2209 1.227764 CCACCATCCTCCTCGCATG 60.228 63.158 0.00 0.00 0.00 4.06
2172 2210 1.690633 ACCACCATCCTCCTCGCAT 60.691 57.895 0.00 0.00 0.00 4.73
2173 2211 2.284625 ACCACCATCCTCCTCGCA 60.285 61.111 0.00 0.00 0.00 5.10
2174 2212 2.187946 CACCACCATCCTCCTCGC 59.812 66.667 0.00 0.00 0.00 5.03
2175 2213 2.735772 CCCACCACCATCCTCCTCG 61.736 68.421 0.00 0.00 0.00 4.63
2176 2214 2.378634 CCCCACCACCATCCTCCTC 61.379 68.421 0.00 0.00 0.00 3.71
2177 2215 2.286425 CCCCACCACCATCCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
2178 2216 3.420482 CCCCCACCACCATCCTCC 61.420 72.222 0.00 0.00 0.00 4.30
2193 2231 4.447342 CCACCACCATCAGCCCCC 62.447 72.222 0.00 0.00 0.00 5.40
2198 2236 4.802051 CCCCGCCACCACCATCAG 62.802 72.222 0.00 0.00 0.00 2.90
2200 2238 3.809013 ATCCCCGCCACCACCATC 61.809 66.667 0.00 0.00 0.00 3.51
2201 2239 4.127744 CATCCCCGCCACCACCAT 62.128 66.667 0.00 0.00 0.00 3.55
2203 2241 3.809013 ATCATCCCCGCCACCACC 61.809 66.667 0.00 0.00 0.00 4.61
2204 2242 2.516930 CATCATCCCCGCCACCAC 60.517 66.667 0.00 0.00 0.00 4.16
2205 2243 3.807839 CCATCATCCCCGCCACCA 61.808 66.667 0.00 0.00 0.00 4.17
2206 2244 3.809013 ACCATCATCCCCGCCACC 61.809 66.667 0.00 0.00 0.00 4.61
2207 2245 2.516930 CACCATCATCCCCGCCAC 60.517 66.667 0.00 0.00 0.00 5.01
2208 2246 4.504596 GCACCATCATCCCCGCCA 62.505 66.667 0.00 0.00 0.00 5.69
2209 2247 4.195334 AGCACCATCATCCCCGCC 62.195 66.667 0.00 0.00 0.00 6.13
2210 2248 2.903855 CAGCACCATCATCCCCGC 60.904 66.667 0.00 0.00 0.00 6.13
2211 2249 2.203252 CCAGCACCATCATCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
2212 2250 2.520260 GCCAGCACCATCATCCCC 60.520 66.667 0.00 0.00 0.00 4.81
2213 2251 2.903855 CGCCAGCACCATCATCCC 60.904 66.667 0.00 0.00 0.00 3.85
2214 2252 2.903855 CCGCCAGCACCATCATCC 60.904 66.667 0.00 0.00 0.00 3.51
2215 2253 2.124570 ACCGCCAGCACCATCATC 60.125 61.111 0.00 0.00 0.00 2.92
2216 2254 2.438975 CACCGCCAGCACCATCAT 60.439 61.111 0.00 0.00 0.00 2.45
2217 2255 3.610619 CTCACCGCCAGCACCATCA 62.611 63.158 0.00 0.00 0.00 3.07
2218 2256 2.821366 CTCACCGCCAGCACCATC 60.821 66.667 0.00 0.00 0.00 3.51
2219 2257 4.415150 CCTCACCGCCAGCACCAT 62.415 66.667 0.00 0.00 0.00 3.55
2225 2263 4.722700 CAACCCCCTCACCGCCAG 62.723 72.222 0.00 0.00 0.00 4.85
2229 2267 4.278513 TTGCCAACCCCCTCACCG 62.279 66.667 0.00 0.00 0.00 4.94
2230 2268 2.600470 GTTGCCAACCCCCTCACC 60.600 66.667 0.00 0.00 0.00 4.02
2231 2269 1.456705 TTGTTGCCAACCCCCTCAC 60.457 57.895 4.90 0.00 0.00 3.51
2232 2270 1.456705 GTTGTTGCCAACCCCCTCA 60.457 57.895 4.90 0.00 44.25 3.86
2233 2271 3.455152 GTTGTTGCCAACCCCCTC 58.545 61.111 4.90 0.00 44.25 4.30
2240 2278 1.333636 CCACCCCTTGTTGTTGCCAA 61.334 55.000 0.00 0.00 0.00 4.52
2241 2279 1.760086 CCACCCCTTGTTGTTGCCA 60.760 57.895 0.00 0.00 0.00 4.92
2242 2280 3.137687 CCACCCCTTGTTGTTGCC 58.862 61.111 0.00 0.00 0.00 4.52
2243 2281 2.133641 AGCCACCCCTTGTTGTTGC 61.134 57.895 0.00 0.00 0.00 4.17
2244 2282 1.741525 CAGCCACCCCTTGTTGTTG 59.258 57.895 0.00 0.00 0.00 3.33
2245 2283 2.133641 GCAGCCACCCCTTGTTGTT 61.134 57.895 0.00 0.00 0.00 2.83
2246 2284 2.521708 GCAGCCACCCCTTGTTGT 60.522 61.111 0.00 0.00 0.00 3.32
2247 2285 1.909781 ATGCAGCCACCCCTTGTTG 60.910 57.895 0.00 0.00 0.00 3.33
2248 2286 1.909781 CATGCAGCCACCCCTTGTT 60.910 57.895 0.00 0.00 0.00 2.83
2249 2287 2.283388 CATGCAGCCACCCCTTGT 60.283 61.111 0.00 0.00 0.00 3.16
2250 2288 2.497792 TACCATGCAGCCACCCCTTG 62.498 60.000 0.00 0.00 0.00 3.61
2251 2289 1.799157 TTACCATGCAGCCACCCCTT 61.799 55.000 0.00 0.00 0.00 3.95
2252 2290 1.583784 ATTACCATGCAGCCACCCCT 61.584 55.000 0.00 0.00 0.00 4.79
2253 2291 1.076044 ATTACCATGCAGCCACCCC 60.076 57.895 0.00 0.00 0.00 4.95
2254 2292 2.118132 CATTACCATGCAGCCACCC 58.882 57.895 0.00 0.00 0.00 4.61
2263 2301 4.533919 TTGGGAGTTTTGCATTACCATG 57.466 40.909 0.00 0.00 0.00 3.66
2264 2302 4.563374 GCTTTGGGAGTTTTGCATTACCAT 60.563 41.667 0.00 0.00 0.00 3.55
2265 2303 3.244044 GCTTTGGGAGTTTTGCATTACCA 60.244 43.478 0.00 0.00 0.00 3.25
2266 2304 3.244044 TGCTTTGGGAGTTTTGCATTACC 60.244 43.478 0.00 0.00 0.00 2.85
2267 2305 3.988819 TGCTTTGGGAGTTTTGCATTAC 58.011 40.909 0.00 0.00 0.00 1.89
2268 2306 3.894427 TCTGCTTTGGGAGTTTTGCATTA 59.106 39.130 0.00 0.00 32.53 1.90
2269 2307 2.699846 TCTGCTTTGGGAGTTTTGCATT 59.300 40.909 0.00 0.00 32.53 3.56
2270 2308 2.318908 TCTGCTTTGGGAGTTTTGCAT 58.681 42.857 0.00 0.00 32.53 3.96
2271 2309 1.774110 TCTGCTTTGGGAGTTTTGCA 58.226 45.000 0.00 0.00 32.53 4.08
2272 2310 3.320626 GAATCTGCTTTGGGAGTTTTGC 58.679 45.455 0.00 0.00 32.53 3.68
2273 2311 3.575687 AGGAATCTGCTTTGGGAGTTTTG 59.424 43.478 0.00 0.00 32.53 2.44
2274 2312 3.575687 CAGGAATCTGCTTTGGGAGTTTT 59.424 43.478 0.00 0.00 33.86 2.43
2275 2313 3.160269 CAGGAATCTGCTTTGGGAGTTT 58.840 45.455 0.00 0.00 33.86 2.66
2276 2314 2.800250 CAGGAATCTGCTTTGGGAGTT 58.200 47.619 0.00 0.00 33.86 3.01
2277 2315 2.503895 CAGGAATCTGCTTTGGGAGT 57.496 50.000 0.00 0.00 33.86 3.85
2287 2325 1.153289 CCTCGGTGGCAGGAATCTG 60.153 63.158 0.00 0.00 43.64 2.90
2288 2326 1.306141 TCCTCGGTGGCAGGAATCT 60.306 57.895 0.00 0.00 37.09 2.40
2289 2327 1.153349 GTCCTCGGTGGCAGGAATC 60.153 63.158 0.00 0.00 41.94 2.52
2290 2328 2.670148 GGTCCTCGGTGGCAGGAAT 61.670 63.158 0.00 0.00 41.94 3.01
2291 2329 3.319198 GGTCCTCGGTGGCAGGAA 61.319 66.667 0.00 0.00 41.94 3.36
2292 2330 4.631740 TGGTCCTCGGTGGCAGGA 62.632 66.667 0.00 0.00 37.75 3.86
2293 2331 4.087892 CTGGTCCTCGGTGGCAGG 62.088 72.222 0.00 0.00 35.26 4.85
2294 2332 2.583441 TTCTGGTCCTCGGTGGCAG 61.583 63.158 0.00 0.00 35.26 4.85
2295 2333 2.525629 TTCTGGTCCTCGGTGGCA 60.526 61.111 0.00 0.00 35.26 4.92
2296 2334 2.047179 GTTCTGGTCCTCGGTGGC 60.047 66.667 0.00 0.00 35.26 5.01
2297 2335 1.293498 CAGTTCTGGTCCTCGGTGG 59.707 63.158 0.00 0.00 37.10 4.61
2298 2336 1.293498 CCAGTTCTGGTCCTCGGTG 59.707 63.158 10.40 0.00 0.00 4.94
2299 2337 2.584391 GCCAGTTCTGGTCCTCGGT 61.584 63.158 18.42 0.00 0.00 4.69
2300 2338 2.232298 GAGCCAGTTCTGGTCCTCGG 62.232 65.000 18.42 0.00 0.00 4.63
2301 2339 1.216710 GAGCCAGTTCTGGTCCTCG 59.783 63.158 18.42 0.00 0.00 4.63
2302 2340 0.908198 ATGAGCCAGTTCTGGTCCTC 59.092 55.000 18.42 16.48 0.00 3.71
2303 2341 1.004044 CAATGAGCCAGTTCTGGTCCT 59.996 52.381 18.42 9.21 0.00 3.85
2304 2342 1.003580 TCAATGAGCCAGTTCTGGTCC 59.996 52.381 18.42 11.61 0.00 4.46
2305 2343 2.354259 CTCAATGAGCCAGTTCTGGTC 58.646 52.381 18.42 14.53 0.00 4.02
2306 2344 2.486472 CTCAATGAGCCAGTTCTGGT 57.514 50.000 18.42 7.08 0.00 4.00
2317 2355 0.259647 TTCCCCATGGGCTCAATGAG 59.740 55.000 26.87 9.25 43.94 2.90
2318 2356 0.709397 TTTCCCCATGGGCTCAATGA 59.291 50.000 26.87 13.26 43.94 2.57
2319 2357 1.117150 CTTTCCCCATGGGCTCAATG 58.883 55.000 26.87 14.54 43.94 2.82
2320 2358 1.009997 TCTTTCCCCATGGGCTCAAT 58.990 50.000 26.87 0.00 43.94 2.57
2321 2359 0.332632 CTCTTTCCCCATGGGCTCAA 59.667 55.000 26.87 14.26 43.94 3.02
2322 2360 0.846427 ACTCTTTCCCCATGGGCTCA 60.846 55.000 26.87 8.32 43.94 4.26
2323 2361 1.213296 TACTCTTTCCCCATGGGCTC 58.787 55.000 26.87 0.00 43.94 4.70
2324 2362 1.566231 CTTACTCTTTCCCCATGGGCT 59.434 52.381 26.87 3.21 43.94 5.19
2325 2363 1.285078 ACTTACTCTTTCCCCATGGGC 59.715 52.381 26.87 0.00 43.94 5.36
2326 2364 2.945890 GCACTTACTCTTTCCCCATGGG 60.946 54.545 25.30 25.30 46.11 4.00
2327 2365 2.369394 GCACTTACTCTTTCCCCATGG 58.631 52.381 4.14 4.14 0.00 3.66
2328 2366 2.290896 TGGCACTTACTCTTTCCCCATG 60.291 50.000 0.00 0.00 0.00 3.66
2329 2367 1.992557 TGGCACTTACTCTTTCCCCAT 59.007 47.619 0.00 0.00 0.00 4.00
2330 2368 1.073284 GTGGCACTTACTCTTTCCCCA 59.927 52.381 11.13 0.00 0.00 4.96
2331 2369 1.351350 AGTGGCACTTACTCTTTCCCC 59.649 52.381 15.88 0.00 0.00 4.81
2332 2370 2.861147 AGTGGCACTTACTCTTTCCC 57.139 50.000 15.88 0.00 0.00 3.97
2333 2371 7.916914 TTATAAAGTGGCACTTACTCTTTCC 57.083 36.000 31.34 0.00 37.47 3.13
2356 2394 9.995003 TGTGACAAGCAAAGGAATAAAATTATT 57.005 25.926 0.00 0.00 36.14 1.40
2358 2396 9.421806 CATGTGACAAGCAAAGGAATAAAATTA 57.578 29.630 0.00 0.00 0.00 1.40
2359 2397 7.095102 GCATGTGACAAGCAAAGGAATAAAATT 60.095 33.333 8.03 0.00 0.00 1.82
2360 2398 6.369615 GCATGTGACAAGCAAAGGAATAAAAT 59.630 34.615 8.03 0.00 0.00 1.82
2361 2399 5.695816 GCATGTGACAAGCAAAGGAATAAAA 59.304 36.000 8.03 0.00 0.00 1.52
2362 2400 5.010922 AGCATGTGACAAGCAAAGGAATAAA 59.989 36.000 15.51 0.00 29.93 1.40
2363 2401 4.523943 AGCATGTGACAAGCAAAGGAATAA 59.476 37.500 15.51 0.00 29.93 1.40
2364 2402 4.081406 AGCATGTGACAAGCAAAGGAATA 58.919 39.130 15.51 0.00 29.93 1.75
2365 2403 2.895404 AGCATGTGACAAGCAAAGGAAT 59.105 40.909 15.51 0.00 29.93 3.01
2366 2404 2.309613 AGCATGTGACAAGCAAAGGAA 58.690 42.857 15.51 0.00 29.93 3.36
2367 2405 1.985473 AGCATGTGACAAGCAAAGGA 58.015 45.000 15.51 0.00 29.93 3.36
2368 2406 2.806608 AAGCATGTGACAAGCAAAGG 57.193 45.000 15.51 0.00 29.93 3.11
2369 2407 8.470040 AAAATATAAGCATGTGACAAGCAAAG 57.530 30.769 15.51 0.00 29.93 2.77
2370 2408 8.830201 AAAAATATAAGCATGTGACAAGCAAA 57.170 26.923 15.51 2.65 29.93 3.68
2371 2409 8.306038 AGAAAAATATAAGCATGTGACAAGCAA 58.694 29.630 15.51 3.02 29.93 3.91
2372 2410 7.829725 AGAAAAATATAAGCATGTGACAAGCA 58.170 30.769 15.51 0.00 29.93 3.91
2373 2411 8.693542 AAGAAAAATATAAGCATGTGACAAGC 57.306 30.769 4.39 4.39 0.00 4.01
2391 2429 8.121708 GCATGTGACAAGCAAAATAAAGAAAAA 58.878 29.630 8.03 0.00 0.00 1.94
2392 2430 7.495279 AGCATGTGACAAGCAAAATAAAGAAAA 59.505 29.630 15.51 0.00 29.93 2.29
2393 2431 6.985645 AGCATGTGACAAGCAAAATAAAGAAA 59.014 30.769 15.51 0.00 29.93 2.52
2394 2432 6.514947 AGCATGTGACAAGCAAAATAAAGAA 58.485 32.000 15.51 0.00 29.93 2.52
2395 2433 6.088016 AGCATGTGACAAGCAAAATAAAGA 57.912 33.333 15.51 0.00 29.93 2.52
2396 2434 7.872163 TTAGCATGTGACAAGCAAAATAAAG 57.128 32.000 15.51 0.00 29.93 1.85
2400 2438 9.090692 GAAATATTAGCATGTGACAAGCAAAAT 57.909 29.630 15.51 14.94 29.93 1.82
2401 2439 8.087136 TGAAATATTAGCATGTGACAAGCAAAA 58.913 29.630 15.51 9.03 29.93 2.44
2402 2440 7.600960 TGAAATATTAGCATGTGACAAGCAAA 58.399 30.769 15.51 0.00 29.93 3.68
2403 2441 7.155655 TGAAATATTAGCATGTGACAAGCAA 57.844 32.000 15.51 7.69 29.93 3.91
2404 2442 6.756299 TGAAATATTAGCATGTGACAAGCA 57.244 33.333 15.51 0.00 29.93 3.91
2405 2443 8.133627 AGAATGAAATATTAGCATGTGACAAGC 58.866 33.333 4.39 4.39 0.00 4.01
2410 2448 9.304731 GCAAAAGAATGAAATATTAGCATGTGA 57.695 29.630 0.00 0.00 0.00 3.58
2411 2449 9.089601 TGCAAAAGAATGAAATATTAGCATGTG 57.910 29.630 0.00 2.08 0.00 3.21
2412 2450 9.309516 CTGCAAAAGAATGAAATATTAGCATGT 57.690 29.630 0.00 0.00 0.00 3.21
2413 2451 8.273557 GCTGCAAAAGAATGAAATATTAGCATG 58.726 33.333 0.00 0.00 0.00 4.06
2414 2452 7.982919 TGCTGCAAAAGAATGAAATATTAGCAT 59.017 29.630 0.00 0.00 30.92 3.79
2415 2453 7.321908 TGCTGCAAAAGAATGAAATATTAGCA 58.678 30.769 0.00 0.00 33.15 3.49
2416 2454 7.760131 TGCTGCAAAAGAATGAAATATTAGC 57.240 32.000 0.00 0.00 0.00 3.09
2419 2457 8.455682 CCAATTGCTGCAAAAGAATGAAATATT 58.544 29.630 20.06 1.17 0.00 1.28
2420 2458 7.825270 TCCAATTGCTGCAAAAGAATGAAATAT 59.175 29.630 20.06 0.00 0.00 1.28
2421 2459 7.118101 GTCCAATTGCTGCAAAAGAATGAAATA 59.882 33.333 20.06 0.00 0.00 1.40
2422 2460 5.998981 TCCAATTGCTGCAAAAGAATGAAAT 59.001 32.000 20.06 0.00 0.00 2.17
2423 2461 5.236911 GTCCAATTGCTGCAAAAGAATGAAA 59.763 36.000 20.06 0.00 0.00 2.69
2424 2462 4.751098 GTCCAATTGCTGCAAAAGAATGAA 59.249 37.500 20.06 0.00 0.00 2.57
2425 2463 4.202233 TGTCCAATTGCTGCAAAAGAATGA 60.202 37.500 20.06 7.59 0.00 2.57
2426 2464 4.059511 TGTCCAATTGCTGCAAAAGAATG 58.940 39.130 20.06 12.51 0.00 2.67
2427 2465 4.339872 TGTCCAATTGCTGCAAAAGAAT 57.660 36.364 20.06 0.00 0.00 2.40
2428 2466 3.815856 TGTCCAATTGCTGCAAAAGAA 57.184 38.095 20.06 3.07 0.00 2.52
2429 2467 5.394443 GGATATGTCCAATTGCTGCAAAAGA 60.394 40.000 20.06 12.99 44.42 2.52
2430 2468 4.807304 GGATATGTCCAATTGCTGCAAAAG 59.193 41.667 20.06 14.00 44.42 2.27
2431 2469 4.757594 GGATATGTCCAATTGCTGCAAAA 58.242 39.130 20.06 0.00 44.42 2.44
2432 2470 4.389890 GGATATGTCCAATTGCTGCAAA 57.610 40.909 20.06 1.50 44.42 3.68
2444 2482 1.354705 GGGCCCCTTTAGGATATGTCC 59.645 57.143 12.23 0.00 45.45 4.02
2445 2483 1.003233 CGGGCCCCTTTAGGATATGTC 59.997 57.143 18.66 0.00 38.24 3.06
2446 2484 1.064825 CGGGCCCCTTTAGGATATGT 58.935 55.000 18.66 0.00 38.24 2.29
2447 2485 1.064825 ACGGGCCCCTTTAGGATATG 58.935 55.000 18.66 0.00 38.24 1.78
2448 2486 2.727429 TACGGGCCCCTTTAGGATAT 57.273 50.000 18.66 0.00 38.24 1.63
2449 2487 2.727429 ATACGGGCCCCTTTAGGATA 57.273 50.000 18.66 0.00 38.24 2.59
2450 2488 1.703513 GAATACGGGCCCCTTTAGGAT 59.296 52.381 18.66 0.00 38.24 3.24
2451 2489 1.134228 GAATACGGGCCCCTTTAGGA 58.866 55.000 18.66 0.00 38.24 2.94
2452 2490 0.109913 GGAATACGGGCCCCTTTAGG 59.890 60.000 18.66 2.75 0.00 2.69
2453 2491 0.250166 CGGAATACGGGCCCCTTTAG 60.250 60.000 18.66 3.65 39.42 1.85
2454 2492 0.690411 TCGGAATACGGGCCCCTTTA 60.690 55.000 18.66 5.42 44.45 1.85
2455 2493 1.564483 TTCGGAATACGGGCCCCTTT 61.564 55.000 18.66 7.27 44.45 3.11
2456 2494 1.996748 TTCGGAATACGGGCCCCTT 60.997 57.895 18.66 7.49 44.45 3.95
2457 2495 2.365901 TTCGGAATACGGGCCCCT 60.366 61.111 18.66 7.52 44.45 4.79
2458 2496 2.203112 GTTCGGAATACGGGCCCC 60.203 66.667 18.66 0.06 44.45 5.80
2459 2497 2.586914 CGTTCGGAATACGGGCCC 60.587 66.667 13.57 13.57 44.45 5.80
2464 2502 0.249322 ATGAGGCCGTTCGGAATACG 60.249 55.000 15.69 0.00 46.11 3.06
2465 2503 1.202486 TGATGAGGCCGTTCGGAATAC 60.202 52.381 15.69 1.97 0.00 1.89
2466 2504 1.116308 TGATGAGGCCGTTCGGAATA 58.884 50.000 15.69 0.00 0.00 1.75
2467 2505 0.462047 GTGATGAGGCCGTTCGGAAT 60.462 55.000 15.69 1.87 0.00 3.01
2468 2506 1.079405 GTGATGAGGCCGTTCGGAA 60.079 57.895 15.69 0.00 0.00 4.30
2469 2507 2.577059 GTGATGAGGCCGTTCGGA 59.423 61.111 15.69 0.00 0.00 4.55
2470 2508 2.511600 GGTGATGAGGCCGTTCGG 60.512 66.667 6.90 6.90 0.00 4.30
2471 2509 2.885644 CGGTGATGAGGCCGTTCG 60.886 66.667 0.00 0.00 42.73 3.95
2476 2514 2.109126 GCAAGACGGTGATGAGGCC 61.109 63.158 0.00 0.00 0.00 5.19
2477 2515 1.078848 AGCAAGACGGTGATGAGGC 60.079 57.895 0.00 0.00 0.00 4.70
2478 2516 0.247460 TCAGCAAGACGGTGATGAGG 59.753 55.000 0.56 0.00 47.00 3.86
2479 2517 3.820595 TCAGCAAGACGGTGATGAG 57.179 52.632 0.56 0.00 47.00 2.90
2484 2522 4.938080 AGTATATCTTCAGCAAGACGGTG 58.062 43.478 0.00 0.00 41.64 4.94
2485 2523 5.352284 CAAGTATATCTTCAGCAAGACGGT 58.648 41.667 0.00 0.00 41.64 4.83
2486 2524 4.210120 GCAAGTATATCTTCAGCAAGACGG 59.790 45.833 0.00 0.00 41.64 4.79
2487 2525 4.210120 GGCAAGTATATCTTCAGCAAGACG 59.790 45.833 0.00 0.00 41.64 4.18
2488 2526 4.210120 CGGCAAGTATATCTTCAGCAAGAC 59.790 45.833 0.00 0.00 41.64 3.01
2489 2527 4.371786 CGGCAAGTATATCTTCAGCAAGA 58.628 43.478 0.00 0.00 43.06 3.02
2490 2528 3.496130 CCGGCAAGTATATCTTCAGCAAG 59.504 47.826 0.00 0.00 33.63 4.01
2491 2529 3.466836 CCGGCAAGTATATCTTCAGCAA 58.533 45.455 0.00 0.00 33.63 3.91
2492 2530 2.224281 CCCGGCAAGTATATCTTCAGCA 60.224 50.000 0.00 0.00 33.63 4.41
2493 2531 2.417719 CCCGGCAAGTATATCTTCAGC 58.582 52.381 0.00 0.00 33.63 4.26
2494 2532 2.872038 GCCCCGGCAAGTATATCTTCAG 60.872 54.545 0.00 0.00 41.49 3.02
2495 2533 1.071699 GCCCCGGCAAGTATATCTTCA 59.928 52.381 0.00 0.00 41.49 3.02
2496 2534 1.348036 AGCCCCGGCAAGTATATCTTC 59.652 52.381 8.74 0.00 44.88 2.87
2497 2535 1.072331 CAGCCCCGGCAAGTATATCTT 59.928 52.381 8.74 0.00 44.88 2.40
2498 2536 0.687354 CAGCCCCGGCAAGTATATCT 59.313 55.000 8.74 0.00 44.88 1.98
2499 2537 0.396811 ACAGCCCCGGCAAGTATATC 59.603 55.000 8.74 0.00 44.88 1.63
2500 2538 1.346722 GTACAGCCCCGGCAAGTATAT 59.653 52.381 8.74 0.00 44.88 0.86
2501 2539 0.754472 GTACAGCCCCGGCAAGTATA 59.246 55.000 8.74 0.00 44.88 1.47
2502 2540 0.981277 AGTACAGCCCCGGCAAGTAT 60.981 55.000 8.74 0.00 44.88 2.12
2503 2541 0.324552 TAGTACAGCCCCGGCAAGTA 60.325 55.000 8.74 7.65 44.88 2.24
2504 2542 0.981277 ATAGTACAGCCCCGGCAAGT 60.981 55.000 8.74 8.65 44.88 3.16
2505 2543 0.249911 GATAGTACAGCCCCGGCAAG 60.250 60.000 8.74 2.51 44.88 4.01
2506 2544 1.692173 GGATAGTACAGCCCCGGCAA 61.692 60.000 8.74 0.00 44.88 4.52
2507 2545 2.138179 GGATAGTACAGCCCCGGCA 61.138 63.158 8.74 0.00 44.88 5.69
2508 2546 2.741747 GGATAGTACAGCCCCGGC 59.258 66.667 0.00 0.00 42.33 6.13
2509 2547 3.048602 CGGATAGTACAGCCCCGG 58.951 66.667 0.00 0.00 36.81 5.73
2510 2548 0.898789 ATCCGGATAGTACAGCCCCG 60.899 60.000 17.43 2.38 39.85 5.73
2511 2549 0.896226 GATCCGGATAGTACAGCCCC 59.104 60.000 19.15 0.00 0.00 5.80
2512 2550 0.896226 GGATCCGGATAGTACAGCCC 59.104 60.000 19.15 7.93 0.00 5.19
2513 2551 1.546476 CTGGATCCGGATAGTACAGCC 59.454 57.143 19.15 13.02 0.00 4.85
2514 2552 2.229302 GACTGGATCCGGATAGTACAGC 59.771 54.545 27.90 18.50 0.00 4.40
2515 2553 3.487372 TGACTGGATCCGGATAGTACAG 58.513 50.000 27.90 22.86 0.00 2.74
2516 2554 3.487372 CTGACTGGATCCGGATAGTACA 58.513 50.000 27.90 15.59 0.00 2.90
2517 2555 2.820787 CCTGACTGGATCCGGATAGTAC 59.179 54.545 27.90 12.19 38.35 2.73
2518 2556 2.818216 GCCTGACTGGATCCGGATAGTA 60.818 54.545 27.90 5.75 38.35 1.82
2519 2557 2.002505 CCTGACTGGATCCGGATAGT 57.997 55.000 27.90 18.45 38.35 2.12
2520 2558 0.605589 GCCTGACTGGATCCGGATAG 59.394 60.000 27.90 21.30 38.35 2.08
2521 2559 0.105709 TGCCTGACTGGATCCGGATA 60.106 55.000 27.90 13.66 38.35 2.59
2522 2560 1.383109 TGCCTGACTGGATCCGGAT 60.383 57.895 27.90 19.21 38.35 4.18
2523 2561 2.038813 TGCCTGACTGGATCCGGA 59.961 61.111 27.90 6.61 38.35 5.14
2524 2562 2.187946 GTGCCTGACTGGATCCGG 59.812 66.667 19.66 19.66 38.35 5.14
2525 2563 2.187946 GGTGCCTGACTGGATCCG 59.812 66.667 7.39 4.62 38.35 4.18
2526 2564 2.592308 GGGTGCCTGACTGGATCC 59.408 66.667 4.20 4.20 38.35 3.36
2527 2565 2.187946 CGGGTGCCTGACTGGATC 59.812 66.667 1.91 0.00 38.35 3.36
2528 2566 3.402681 CCGGGTGCCTGACTGGAT 61.403 66.667 1.91 0.00 38.35 3.41
2529 2567 4.631740 TCCGGGTGCCTGACTGGA 62.632 66.667 0.00 0.00 38.35 3.86
2530 2568 4.394712 GTCCGGGTGCCTGACTGG 62.395 72.222 0.00 0.00 35.38 4.00
2531 2569 4.394712 GGTCCGGGTGCCTGACTG 62.395 72.222 0.00 0.00 37.78 3.51
2550 2588 2.919494 GCTCGTGGCCAAAACCAGG 61.919 63.158 7.24 0.00 45.05 4.45
2551 2589 1.898574 AGCTCGTGGCCAAAACCAG 60.899 57.895 7.24 0.00 41.46 4.00
2552 2590 2.192861 CAGCTCGTGGCCAAAACCA 61.193 57.895 7.24 0.00 43.05 3.67
2553 2591 2.644992 CAGCTCGTGGCCAAAACC 59.355 61.111 7.24 0.00 43.05 3.27
2554 2592 2.644992 CCAGCTCGTGGCCAAAAC 59.355 61.111 7.24 0.00 40.39 2.43
2562 2600 2.047844 CCAGTGGTCCAGCTCGTG 60.048 66.667 0.00 0.00 0.00 4.35
2563 2601 2.725127 TACCCAGTGGTCCAGCTCGT 62.725 60.000 8.74 0.00 43.06 4.18
2564 2602 1.949847 CTACCCAGTGGTCCAGCTCG 61.950 65.000 8.74 0.00 43.06 5.03
2565 2603 1.901085 CTACCCAGTGGTCCAGCTC 59.099 63.158 8.74 0.00 43.06 4.09
2566 2604 2.294078 GCTACCCAGTGGTCCAGCT 61.294 63.158 8.74 0.00 43.06 4.24
2567 2605 2.269241 GCTACCCAGTGGTCCAGC 59.731 66.667 8.74 9.60 43.06 4.85
2568 2606 2.579201 CGCTACCCAGTGGTCCAG 59.421 66.667 8.74 3.02 43.06 3.86
2569 2607 3.000819 CCGCTACCCAGTGGTCCA 61.001 66.667 8.74 0.00 43.06 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.