Multiple sequence alignment - TraesCS3B01G527400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G527400 chr3B 100.000 3577 0 0 1 3577 769379365 769375789 0.000000e+00 6606.0
1 TraesCS3B01G527400 chr3B 91.107 3396 222 23 1 3380 769268884 769265553 0.000000e+00 4525.0
2 TraesCS3B01G527400 chr3B 93.274 2230 127 6 572 2795 770404631 770402419 0.000000e+00 3265.0
3 TraesCS3B01G527400 chr3B 91.809 2161 140 15 643 2795 769489083 769486952 0.000000e+00 2976.0
4 TraesCS3B01G527400 chr3B 89.901 2129 163 23 1 2096 770098557 770096448 0.000000e+00 2693.0
5 TraesCS3B01G527400 chr3B 89.061 1810 170 8 851 2649 770313218 770311426 0.000000e+00 2220.0
6 TraesCS3B01G527400 chr3B 90.284 1688 121 11 1 1677 770315376 770313721 0.000000e+00 2169.0
7 TraesCS3B01G527400 chr3B 87.137 1687 197 9 966 2649 770208706 770207037 0.000000e+00 1895.0
8 TraesCS3B01G527400 chr3B 87.137 1687 196 10 966 2649 769906935 769905267 0.000000e+00 1893.0
9 TraesCS3B01G527400 chr3B 81.378 1858 255 45 573 2381 769995550 769993735 0.000000e+00 1430.0
10 TraesCS3B01G527400 chr3B 80.101 1980 327 41 602 2566 770229385 770227458 0.000000e+00 1411.0
11 TraesCS3B01G527400 chr3B 95.670 716 31 0 1429 2144 769456621 769455906 0.000000e+00 1151.0
12 TraesCS3B01G527400 chr3B 90.824 850 69 7 2731 3577 770086647 770085804 0.000000e+00 1129.0
13 TraesCS3B01G527400 chr3B 89.816 815 53 7 602 1416 769458677 769457893 0.000000e+00 1018.0
14 TraesCS3B01G527400 chr3B 93.313 643 43 0 2096 2738 770089063 770088421 0.000000e+00 950.0
15 TraesCS3B01G527400 chr3B 90.634 694 58 5 2887 3577 769486939 769486250 0.000000e+00 915.0
16 TraesCS3B01G527400 chr3B 89.474 722 69 6 2859 3577 769454056 769453339 0.000000e+00 905.0
17 TraesCS3B01G527400 chr3B 91.884 653 46 3 1 646 769511008 769510356 0.000000e+00 905.0
18 TraesCS3B01G527400 chr3B 93.432 609 35 4 1 606 769459453 769458847 0.000000e+00 898.0
19 TraesCS3B01G527400 chr3B 90.202 694 61 5 2887 3577 770402406 770401717 0.000000e+00 898.0
20 TraesCS3B01G527400 chr3B 93.299 582 35 3 1 578 770007908 770007327 0.000000e+00 856.0
21 TraesCS3B01G527400 chr3B 92.000 600 46 2 2198 2795 769454681 769454082 0.000000e+00 841.0
22 TraesCS3B01G527400 chr3B 89.703 437 33 6 663 1099 769330627 769330203 6.750000e-152 547.0
23 TraesCS3B01G527400 chr3B 73.707 1605 328 52 1024 2592 769633119 769631573 1.130000e-149 540.0
24 TraesCS3B01G527400 chr3B 90.657 396 28 5 1684 2079 770313599 770313213 5.290000e-143 518.0
25 TraesCS3B01G527400 chr3B 91.329 346 26 4 2313 2656 770355764 770355421 1.500000e-128 470.0
26 TraesCS3B01G527400 chr3B 89.385 179 15 2 2 178 770407006 770406830 4.650000e-54 222.0
27 TraesCS3B01G527400 chr3B 92.727 110 6 2 3399 3507 769265564 769265456 1.330000e-34 158.0
28 TraesCS3B01G527400 chr3B 95.833 48 1 1 560 607 770248336 770248290 3.830000e-10 76.8
29 TraesCS3B01G527400 chr3A 82.778 2282 334 33 353 2610 712655763 712653517 0.000000e+00 1982.0
30 TraesCS3B01G527400 chr2D 84.715 772 99 12 2652 3416 483079892 483080651 0.000000e+00 754.0
31 TraesCS3B01G527400 chr2D 83.724 768 85 22 2652 3416 483080661 483081391 0.000000e+00 689.0
32 TraesCS3B01G527400 chr2D 85.629 668 69 16 2661 3322 483077620 483078266 0.000000e+00 676.0
33 TraesCS3B01G527400 chr2D 85.303 660 85 10 2652 3306 483124398 483125050 0.000000e+00 671.0
34 TraesCS3B01G527400 chr2D 86.641 524 59 8 2892 3409 483123864 483124382 1.440000e-158 569.0
35 TraesCS3B01G527400 chr2D 84.774 243 35 2 2652 2893 483081401 483081642 3.570000e-60 243.0
36 TraesCS3B01G527400 chr1B 90.419 167 12 4 179 345 531122175 531122013 2.160000e-52 217.0
37 TraesCS3B01G527400 chr3D 88.439 173 16 4 173 345 87925993 87926161 4.680000e-49 206.0
38 TraesCS3B01G527400 chr3D 88.506 174 15 4 173 345 293809709 293809878 4.680000e-49 206.0
39 TraesCS3B01G527400 chr5B 100.000 29 0 0 2798 2826 600289405 600289377 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G527400 chr3B 769375789 769379365 3576 True 6606.000000 6606 100.000000 1 3577 1 chr3B.!!$R2 3576
1 TraesCS3B01G527400 chr3B 770096448 770098557 2109 True 2693.000000 2693 89.901000 1 2096 1 chr3B.!!$R8 2095
2 TraesCS3B01G527400 chr3B 769265456 769268884 3428 True 2341.500000 4525 91.917000 1 3507 2 chr3B.!!$R13 3506
3 TraesCS3B01G527400 chr3B 769486250 769489083 2833 True 1945.500000 2976 91.221500 643 3577 2 chr3B.!!$R15 2934
4 TraesCS3B01G527400 chr3B 770207037 770208706 1669 True 1895.000000 1895 87.137000 966 2649 1 chr3B.!!$R9 1683
5 TraesCS3B01G527400 chr3B 769905267 769906935 1668 True 1893.000000 1893 87.137000 966 2649 1 chr3B.!!$R5 1683
6 TraesCS3B01G527400 chr3B 770311426 770315376 3950 True 1635.666667 2220 90.000667 1 2649 3 chr3B.!!$R17 2648
7 TraesCS3B01G527400 chr3B 770401717 770407006 5289 True 1461.666667 3265 90.953667 2 3577 3 chr3B.!!$R18 3575
8 TraesCS3B01G527400 chr3B 769993735 769995550 1815 True 1430.000000 1430 81.378000 573 2381 1 chr3B.!!$R6 1808
9 TraesCS3B01G527400 chr3B 770227458 770229385 1927 True 1411.000000 1411 80.101000 602 2566 1 chr3B.!!$R10 1964
10 TraesCS3B01G527400 chr3B 770085804 770089063 3259 True 1039.500000 1129 92.068500 2096 3577 2 chr3B.!!$R16 1481
11 TraesCS3B01G527400 chr3B 769453339 769459453 6114 True 962.600000 1151 92.078400 1 3577 5 chr3B.!!$R14 3576
12 TraesCS3B01G527400 chr3B 769510356 769511008 652 True 905.000000 905 91.884000 1 646 1 chr3B.!!$R3 645
13 TraesCS3B01G527400 chr3B 770007327 770007908 581 True 856.000000 856 93.299000 1 578 1 chr3B.!!$R7 577
14 TraesCS3B01G527400 chr3B 769631573 769633119 1546 True 540.000000 540 73.707000 1024 2592 1 chr3B.!!$R4 1568
15 TraesCS3B01G527400 chr3A 712653517 712655763 2246 True 1982.000000 1982 82.778000 353 2610 1 chr3A.!!$R1 2257
16 TraesCS3B01G527400 chr2D 483123864 483125050 1186 False 620.000000 671 85.972000 2652 3409 2 chr2D.!!$F2 757
17 TraesCS3B01G527400 chr2D 483077620 483081642 4022 False 590.500000 754 84.710500 2652 3416 4 chr2D.!!$F1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 2880 0.381801 CAGCCGCTCACTTGTTTTGT 59.618 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2746 10931 0.3199 ATATGTCGTCTGGCGCATCC 60.32 55.0 10.83 0.0 41.07 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.270877 GGATGTGGCTGGTTAGTACTTG 58.729 50.000 0.00 0.00 0.00 3.16
42 43 2.051692 TGTGGCTGGTTAGTACTTGGT 58.948 47.619 0.00 0.00 0.00 3.67
46 47 2.423577 GCTGGTTAGTACTTGGTGGTG 58.576 52.381 0.00 0.00 0.00 4.17
56 57 1.476488 ACTTGGTGGTGTTCTGCAAAC 59.524 47.619 0.00 0.00 0.00 2.93
110 131 8.907222 AAAATGCCAAAACTTATCTCACAATT 57.093 26.923 0.00 0.00 0.00 2.32
261 1854 4.697352 AGCAAAACGAGTGAATCTATGCTT 59.303 37.500 0.00 0.00 38.35 3.91
426 2024 3.548793 CCTCTGCTCTAGGGTCCAT 57.451 57.895 0.00 0.00 0.00 3.41
612 2674 6.825213 TCTCATGCAAGCATAGTACAAAAGAT 59.175 34.615 7.29 0.00 34.91 2.40
641 2703 3.737172 AAACGCCATGTCCGCTGC 61.737 61.111 3.27 0.00 0.00 5.25
658 2721 2.352805 CCACCACCTCCAAGGAGC 59.647 66.667 10.68 0.00 37.67 4.70
683 2746 7.567771 GCTCGTCTCCAAATATATTTTGTCTCG 60.568 40.741 8.01 10.48 0.00 4.04
688 2751 7.012327 TCTCCAAATATATTTTGTCTCGCCAAG 59.988 37.037 8.01 0.00 0.00 3.61
780 2844 1.293498 CTCACCCAGAAGGACACCG 59.707 63.158 0.00 0.00 39.89 4.94
816 2880 0.381801 CAGCCGCTCACTTGTTTTGT 59.618 50.000 0.00 0.00 0.00 2.83
857 2921 2.109126 GCCGCTCACTTGGATCACC 61.109 63.158 0.00 0.00 0.00 4.02
960 4359 3.304794 GCGTAGTGCAGGGTATCTCTTAG 60.305 52.174 0.00 0.00 45.45 2.18
961 4360 4.135306 CGTAGTGCAGGGTATCTCTTAGA 58.865 47.826 0.00 0.00 0.00 2.10
962 4361 4.023878 CGTAGTGCAGGGTATCTCTTAGAC 60.024 50.000 0.00 0.00 0.00 2.59
963 4362 4.258457 AGTGCAGGGTATCTCTTAGACT 57.742 45.455 0.00 0.00 0.00 3.24
964 4363 4.211920 AGTGCAGGGTATCTCTTAGACTC 58.788 47.826 0.00 0.00 0.00 3.36
992 4399 3.371166 GGTTAGCCTGCTACCCACAAATA 60.371 47.826 7.77 0.00 32.22 1.40
995 4402 2.308866 AGCCTGCTACCCACAAATAACT 59.691 45.455 0.00 0.00 0.00 2.24
1027 4434 3.767131 TGAGATGGTCAAGTCGGTCATTA 59.233 43.478 0.00 0.00 29.64 1.90
1269 4676 2.583319 GTAGCGCGCAGATGCAGA 60.583 61.111 35.10 4.32 42.21 4.26
1295 4702 3.285371 TCGGGAAGAAGACGAGGC 58.715 61.111 0.00 0.00 32.29 4.70
1296 4703 2.202623 CGGGAAGAAGACGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
1297 4704 2.184579 GGGAAGAAGACGAGGCGG 59.815 66.667 0.00 0.00 0.00 6.13
1298 4705 2.348888 GGGAAGAAGACGAGGCGGA 61.349 63.158 0.00 0.00 0.00 5.54
1299 4706 1.153804 GGAAGAAGACGAGGCGGAC 60.154 63.158 0.00 0.00 0.00 4.79
1300 4707 1.596895 GGAAGAAGACGAGGCGGACT 61.597 60.000 0.00 0.00 0.00 3.85
1326 4733 1.992557 AGCAGGTGGTAAGGAAATCCA 59.007 47.619 1.67 0.00 38.89 3.41
1383 4790 1.623311 TCATCTCCTCTTTCGTTGGCA 59.377 47.619 0.00 0.00 0.00 4.92
1619 6288 2.102925 CCGCATAGGGCCAATCAATTTT 59.897 45.455 6.18 0.00 40.31 1.82
1622 6291 4.680172 CGCATAGGGCCAATCAATTTTCAA 60.680 41.667 6.18 0.00 40.31 2.69
1680 6349 3.421844 GAAGATTGTAAGGTGCCCAAGT 58.578 45.455 0.00 0.00 0.00 3.16
2253 8155 6.372381 CCTCACACATGTAAATGTTCATCTGA 59.628 38.462 0.00 0.00 31.37 3.27
2309 8211 7.973388 GCGATAGACTATCTTCATCTTAATGCT 59.027 37.037 18.21 0.00 39.76 3.79
2374 8276 1.415289 TGCTCACCTATGCATGGAGAG 59.585 52.381 24.57 24.57 42.54 3.20
2480 8385 1.001746 CAGCAGGATCAGCGGATACAT 59.998 52.381 11.89 0.00 36.77 2.29
2508 8416 4.160439 TGAATCAGGTAGCTCGTTCATTCT 59.840 41.667 12.20 0.00 0.00 2.40
2513 8421 5.867716 TCAGGTAGCTCGTTCATTCTTAAAC 59.132 40.000 0.00 0.00 0.00 2.01
2515 8423 4.032558 GGTAGCTCGTTCATTCTTAAACCG 59.967 45.833 0.00 0.00 0.00 4.44
2680 9082 1.260544 AAAAAGGACATCTGCCCAGC 58.739 50.000 0.00 0.00 0.00 4.85
2681 9083 0.407139 AAAAGGACATCTGCCCAGCT 59.593 50.000 0.00 0.00 0.00 4.24
2695 9097 4.630111 TGCCCAGCTAAATTGTCAAAAAG 58.370 39.130 0.00 0.00 0.00 2.27
2738 9142 1.786937 AAAAATGACCACCTGTGCCA 58.213 45.000 0.00 0.00 0.00 4.92
2739 9143 1.039856 AAAATGACCACCTGTGCCAC 58.960 50.000 0.00 0.00 0.00 5.01
2795 10980 2.343506 CCATGTTGTCTGGCAGCAA 58.656 52.632 10.34 14.33 41.53 3.91
2952 11137 2.290367 CCATGCGTTGTGTCTGAAAAGA 59.710 45.455 0.00 0.00 0.00 2.52
2970 11155 3.842126 CGTCATGACACGCCGCTG 61.842 66.667 24.93 2.80 31.96 5.18
3012 11197 3.353836 GCCGTCCGTTGCACACAT 61.354 61.111 0.00 0.00 0.00 3.21
3125 14370 6.761099 TCACTAGAATCTGTCACTAGAACC 57.239 41.667 0.00 0.00 37.58 3.62
3126 14371 6.486056 TCACTAGAATCTGTCACTAGAACCT 58.514 40.000 0.00 0.00 37.58 3.50
3127 14372 6.375736 TCACTAGAATCTGTCACTAGAACCTG 59.624 42.308 0.00 0.00 37.58 4.00
3128 14373 4.464069 AGAATCTGTCACTAGAACCTGC 57.536 45.455 0.00 0.00 0.00 4.85
3129 14374 4.093011 AGAATCTGTCACTAGAACCTGCT 58.907 43.478 0.00 0.00 0.00 4.24
3357 14610 9.797556 GTACAAGTGGTTCTTTTAGACATTTTT 57.202 29.630 0.00 0.00 33.63 1.94
3525 14779 1.000394 TGGAATCACGCTCGAAGAACA 60.000 47.619 0.00 0.00 34.09 3.18
3531 14785 2.673862 TCACGCTCGAAGAACAAAAACA 59.326 40.909 0.00 0.00 34.09 2.83
3565 14820 9.481340 AACAAGAAAATAGAGAAGAAAAATGGC 57.519 29.630 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.385390 CCAGTTTGCAGAACACCACC 59.615 55.000 12.28 0.00 0.00 4.61
42 43 1.102154 CACCAGTTTGCAGAACACCA 58.898 50.000 12.28 0.00 0.00 4.17
46 47 3.202906 TCACTACACCAGTTTGCAGAAC 58.797 45.455 4.26 4.26 34.26 3.01
56 57 1.079127 CCCCGCTTCACTACACCAG 60.079 63.158 0.00 0.00 0.00 4.00
110 131 4.406649 TCTGACCATCATCTGCATCTAACA 59.593 41.667 0.00 0.00 0.00 2.41
150 173 5.775195 AGACTCGGTTGGTGATGATGATATA 59.225 40.000 0.00 0.00 0.00 0.86
152 175 3.960755 AGACTCGGTTGGTGATGATGATA 59.039 43.478 0.00 0.00 0.00 2.15
480 2248 6.214399 CCACCTTATCTTCAAGATACGTACC 58.786 44.000 6.62 0.00 36.96 3.34
488 2256 2.935238 GCACGCCACCTTATCTTCAAGA 60.935 50.000 0.00 0.00 0.00 3.02
492 2260 1.666189 GAAGCACGCCACCTTATCTTC 59.334 52.381 0.00 0.00 0.00 2.87
533 2301 7.224753 CACAATATACTTGTCGCCTCAACTAAT 59.775 37.037 0.00 0.00 0.00 1.73
641 2703 2.190488 GAGCTCCTTGGAGGTGGTGG 62.190 65.000 23.87 0.00 39.41 4.61
658 2721 7.567771 GCGAGACAAAATATATTTGGAGACGAG 60.568 40.741 17.80 6.44 33.92 4.18
764 2827 1.004918 GACGGTGTCCTTCTGGGTG 60.005 63.158 0.00 0.00 36.25 4.61
780 2844 3.181516 CGGCTGAAACATCTAAGCTTGAC 60.182 47.826 9.86 0.00 35.93 3.18
857 2921 0.588252 CTCCTTGCTTCGTTGGTGTG 59.412 55.000 0.00 0.00 0.00 3.82
960 4359 2.498078 AGCAGGCTAACCAGTAAGAGTC 59.502 50.000 0.00 0.00 39.06 3.36
961 4360 2.541466 AGCAGGCTAACCAGTAAGAGT 58.459 47.619 0.00 0.00 39.06 3.24
962 4361 3.181474 GGTAGCAGGCTAACCAGTAAGAG 60.181 52.174 5.01 0.00 39.06 2.85
963 4362 2.764572 GGTAGCAGGCTAACCAGTAAGA 59.235 50.000 5.01 0.00 39.06 2.10
964 4363 3.180891 GGTAGCAGGCTAACCAGTAAG 57.819 52.381 5.01 0.00 39.06 2.34
992 4399 3.051581 ACCATCTCAGCCATGGATAGTT 58.948 45.455 18.40 1.03 43.32 2.24
995 4402 2.693210 TGACCATCTCAGCCATGGATA 58.307 47.619 18.40 0.00 43.32 2.59
1027 4434 0.394352 CGGCTAACTGCTTCCCCAAT 60.394 55.000 0.00 0.00 42.39 3.16
1269 4676 3.729966 GTCTTCTTCCCGAGAAAGTTGT 58.270 45.455 0.00 0.00 43.56 3.32
1296 4703 4.767255 CACCTGCTCCGCCAGTCC 62.767 72.222 0.00 0.00 0.00 3.85
1297 4704 4.767255 CCACCTGCTCCGCCAGTC 62.767 72.222 0.00 0.00 0.00 3.51
1299 4706 2.859273 CTTACCACCTGCTCCGCCAG 62.859 65.000 0.00 0.00 0.00 4.85
1300 4707 2.925706 TTACCACCTGCTCCGCCA 60.926 61.111 0.00 0.00 0.00 5.69
1409 4816 1.377725 AATAGCTGCGCTGGCACTT 60.378 52.632 23.01 14.55 46.21 3.16
1619 6288 2.922503 TCCAGCCCACGCTCTTGA 60.923 61.111 0.00 0.00 43.95 3.02
1680 6349 2.712087 TGACCCCTAGGCAAAAACTGTA 59.288 45.455 2.05 0.00 36.11 2.74
2253 8155 2.492088 TCATCATCTCGTCGAGTTGGTT 59.508 45.455 25.55 14.98 32.22 3.67
2309 8211 1.341679 ACCTGGTACGACATAGCCTCA 60.342 52.381 0.00 0.00 0.00 3.86
2374 8276 1.335051 GCTTTCTTTCCGCACTTGTCC 60.335 52.381 0.00 0.00 0.00 4.02
2480 8385 2.959030 ACGAGCTACCTGATTCAGCATA 59.041 45.455 8.23 2.47 37.78 3.14
2508 8416 1.302383 CGCACAGCCCATCGGTTTAA 61.302 55.000 0.00 0.00 0.00 1.52
2513 8421 2.969238 GATCGCACAGCCCATCGG 60.969 66.667 0.00 0.00 0.00 4.18
2515 8423 1.596477 GAGGATCGCACAGCCCATC 60.596 63.158 0.00 0.00 0.00 3.51
2605 8516 6.895782 TCTATACAAAAAGGAGGGTGTATGG 58.104 40.000 5.62 3.28 37.65 2.74
2668 8582 3.019564 GACAATTTAGCTGGGCAGATGT 58.980 45.455 0.00 0.00 0.00 3.06
2680 9082 9.280174 TGTAGGTAGTCCTTTTTGACAATTTAG 57.720 33.333 0.00 0.00 42.12 1.85
2681 9083 9.629878 TTGTAGGTAGTCCTTTTTGACAATTTA 57.370 29.630 0.00 0.00 42.12 1.40
2695 9097 8.625786 TTTACATTTTCCTTTGTAGGTAGTCC 57.374 34.615 0.00 0.00 42.60 3.85
2746 10931 0.319900 ATATGTCGTCTGGCGCATCC 60.320 55.000 10.83 0.00 41.07 3.51
2952 11137 4.357947 AGCGGCGTGTCATGACGT 62.358 61.111 21.05 5.92 38.07 4.34
2970 11155 6.404074 CCTTTGACATCTTTTAGTGATGGAGC 60.404 42.308 8.32 0.00 43.88 4.70
3012 11197 7.841282 AAGTAATCATAGTCTAGCCTTAGCA 57.159 36.000 0.00 0.00 43.56 3.49
3117 14362 1.797025 GAAACGCAGCAGGTTCTAGT 58.203 50.000 7.52 0.00 35.11 2.57
3119 14364 2.822306 CGAAACGCAGCAGGTTCTA 58.178 52.632 11.55 0.00 35.77 2.10
3120 14365 3.642755 CGAAACGCAGCAGGTTCT 58.357 55.556 11.55 0.00 35.77 3.01
3252 14501 4.335647 CCTGCCGCCACCAACTCT 62.336 66.667 0.00 0.00 0.00 3.24
3256 14505 3.884774 AGAACCTGCCGCCACCAA 61.885 61.111 0.00 0.00 0.00 3.67
3279 14532 4.767255 CTGCCGCCACAGGGTCTC 62.767 72.222 0.00 0.00 36.17 3.36
3323 14576 2.708861 AGAACCACTTGTACCATGGTGA 59.291 45.455 28.17 11.07 46.18 4.02
3416 14670 5.568685 TGATGATCTAGCTAGGAATACGC 57.431 43.478 20.58 5.64 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.