AutoCloner

Multiple sequence alignment - TraesCS3B01G527400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G527400	chr3B	100.000	3577	0	0	1	3577	769379365	769375789	0.000000e+00	6606.0
1	TraesCS3B01G527400	chr3B	91.107	3396	222	23	1	3380	769268884	769265553	0.000000e+00	4525.0
2	TraesCS3B01G527400	chr3B	93.274	2230	127	6	572	2795	770404631	770402419	0.000000e+00	3265.0
3	TraesCS3B01G527400	chr3B	91.809	2161	140	15	643	2795	769489083	769486952	0.000000e+00	2976.0
4	TraesCS3B01G527400	chr3B	89.901	2129	163	23	1	2096	770098557	770096448	0.000000e+00	2693.0
5	TraesCS3B01G527400	chr3B	89.061	1810	170	8	851	2649	770313218	770311426	0.000000e+00	2220.0
6	TraesCS3B01G527400	chr3B	90.284	1688	121	11	1	1677	770315376	770313721	0.000000e+00	2169.0
7	TraesCS3B01G527400	chr3B	87.137	1687	197	9	966	2649	770208706	770207037	0.000000e+00	1895.0
8	TraesCS3B01G527400	chr3B	87.137	1687	196	10	966	2649	769906935	769905267	0.000000e+00	1893.0
9	TraesCS3B01G527400	chr3B	81.378	1858	255	45	573	2381	769995550	769993735	0.000000e+00	1430.0
10	TraesCS3B01G527400	chr3B	80.101	1980	327	41	602	2566	770229385	770227458	0.000000e+00	1411.0
11	TraesCS3B01G527400	chr3B	95.670	716	31	0	1429	2144	769456621	769455906	0.000000e+00	1151.0
12	TraesCS3B01G527400	chr3B	90.824	850	69	7	2731	3577	770086647	770085804	0.000000e+00	1129.0
13	TraesCS3B01G527400	chr3B	89.816	815	53	7	602	1416	769458677	769457893	0.000000e+00	1018.0
14	TraesCS3B01G527400	chr3B	93.313	643	43	0	2096	2738	770089063	770088421	0.000000e+00	950.0
15	TraesCS3B01G527400	chr3B	90.634	694	58	5	2887	3577	769486939	769486250	0.000000e+00	915.0
16	TraesCS3B01G527400	chr3B	89.474	722	69	6	2859	3577	769454056	769453339	0.000000e+00	905.0
17	TraesCS3B01G527400	chr3B	91.884	653	46	3	1	646	769511008	769510356	0.000000e+00	905.0
18	TraesCS3B01G527400	chr3B	93.432	609	35	4	1	606	769459453	769458847	0.000000e+00	898.0
19	TraesCS3B01G527400	chr3B	90.202	694	61	5	2887	3577	770402406	770401717	0.000000e+00	898.0
20	TraesCS3B01G527400	chr3B	93.299	582	35	3	1	578	770007908	770007327	0.000000e+00	856.0
21	TraesCS3B01G527400	chr3B	92.000	600	46	2	2198	2795	769454681	769454082	0.000000e+00	841.0
22	TraesCS3B01G527400	chr3B	89.703	437	33	6	663	1099	769330627	769330203	6.750000e-152	547.0
23	TraesCS3B01G527400	chr3B	73.707	1605	328	52	1024	2592	769633119	769631573	1.130000e-149	540.0
24	TraesCS3B01G527400	chr3B	90.657	396	28	5	1684	2079	770313599	770313213	5.290000e-143	518.0
25	TraesCS3B01G527400	chr3B	91.329	346	26	4	2313	2656	770355764	770355421	1.500000e-128	470.0
26	TraesCS3B01G527400	chr3B	89.385	179	15	2	2	178	770407006	770406830	4.650000e-54	222.0
27	TraesCS3B01G527400	chr3B	92.727	110	6	2	3399	3507	769265564	769265456	1.330000e-34	158.0
28	TraesCS3B01G527400	chr3B	95.833	48	1	1	560	607	770248336	770248290	3.830000e-10	76.8
29	TraesCS3B01G527400	chr3A	82.778	2282	334	33	353	2610	712655763	712653517	0.000000e+00	1982.0
30	TraesCS3B01G527400	chr2D	84.715	772	99	12	2652	3416	483079892	483080651	0.000000e+00	754.0
31	TraesCS3B01G527400	chr2D	83.724	768	85	22	2652	3416	483080661	483081391	0.000000e+00	689.0
32	TraesCS3B01G527400	chr2D	85.629	668	69	16	2661	3322	483077620	483078266	0.000000e+00	676.0
33	TraesCS3B01G527400	chr2D	85.303	660	85	10	2652	3306	483124398	483125050	0.000000e+00	671.0
34	TraesCS3B01G527400	chr2D	86.641	524	59	8	2892	3409	483123864	483124382	1.440000e-158	569.0
35	TraesCS3B01G527400	chr2D	84.774	243	35	2	2652	2893	483081401	483081642	3.570000e-60	243.0
36	TraesCS3B01G527400	chr1B	90.419	167	12	4	179	345	531122175	531122013	2.160000e-52	217.0
37	TraesCS3B01G527400	chr3D	88.439	173	16	4	173	345	87925993	87926161	4.680000e-49	206.0
38	TraesCS3B01G527400	chr3D	88.506	174	15	4	173	345	293809709	293809878	4.680000e-49	206.0
39	TraesCS3B01G527400	chr5B	100.000	29	0	0	2798	2826	600289405	600289377	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G527400	chr3B	769375789	769379365	3576	True	6606.000000	6606	100.000000	1	3577	1	chr3B.!!$R2	3576
1	TraesCS3B01G527400	chr3B	770096448	770098557	2109	True	2693.000000	2693	89.901000	1	2096	1	chr3B.!!$R8	2095
2	TraesCS3B01G527400	chr3B	769265456	769268884	3428	True	2341.500000	4525	91.917000	1	3507	2	chr3B.!!$R13	3506
3	TraesCS3B01G527400	chr3B	769486250	769489083	2833	True	1945.500000	2976	91.221500	643	3577	2	chr3B.!!$R15	2934
4	TraesCS3B01G527400	chr3B	770207037	770208706	1669	True	1895.000000	1895	87.137000	966	2649	1	chr3B.!!$R9	1683
5	TraesCS3B01G527400	chr3B	769905267	769906935	1668	True	1893.000000	1893	87.137000	966	2649	1	chr3B.!!$R5	1683
6	TraesCS3B01G527400	chr3B	770311426	770315376	3950	True	1635.666667	2220	90.000667	1	2649	3	chr3B.!!$R17	2648
7	TraesCS3B01G527400	chr3B	770401717	770407006	5289	True	1461.666667	3265	90.953667	2	3577	3	chr3B.!!$R18	3575
8	TraesCS3B01G527400	chr3B	769993735	769995550	1815	True	1430.000000	1430	81.378000	573	2381	1	chr3B.!!$R6	1808
9	TraesCS3B01G527400	chr3B	770227458	770229385	1927	True	1411.000000	1411	80.101000	602	2566	1	chr3B.!!$R10	1964
10	TraesCS3B01G527400	chr3B	770085804	770089063	3259	True	1039.500000	1129	92.068500	2096	3577	2	chr3B.!!$R16	1481
11	TraesCS3B01G527400	chr3B	769453339	769459453	6114	True	962.600000	1151	92.078400	1	3577	5	chr3B.!!$R14	3576
12	TraesCS3B01G527400	chr3B	769510356	769511008	652	True	905.000000	905	91.884000	1	646	1	chr3B.!!$R3	645
13	TraesCS3B01G527400	chr3B	770007327	770007908	581	True	856.000000	856	93.299000	1	578	1	chr3B.!!$R7	577
14	TraesCS3B01G527400	chr3B	769631573	769633119	1546	True	540.000000	540	73.707000	1024	2592	1	chr3B.!!$R4	1568
15	TraesCS3B01G527400	chr3A	712653517	712655763	2246	True	1982.000000	1982	82.778000	353	2610	1	chr3A.!!$R1	2257
16	TraesCS3B01G527400	chr2D	483123864	483125050	1186	False	620.000000	671	85.972000	2652	3409	2	chr2D.!!$F2	757
17	TraesCS3B01G527400	chr2D	483077620	483081642	4022	False	590.500000	754	84.710500	2652	3416	4	chr2D.!!$F1	764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
816	2880	0.381801	CAGCCGCTCACTTGTTTTGT	59.618	50.0	0.0	0.0	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2746	10931	0.3199	ATATGTCGTCTGGCGCATCC	60.32	55.0	10.83	0.0	41.07	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	3.270877	GGATGTGGCTGGTTAGTACTTG	58.729	50.000	0.00	0.00	0.00	3.16
42	43	2.051692	TGTGGCTGGTTAGTACTTGGT	58.948	47.619	0.00	0.00	0.00	3.67
46	47	2.423577	GCTGGTTAGTACTTGGTGGTG	58.576	52.381	0.00	0.00	0.00	4.17
56	57	1.476488	ACTTGGTGGTGTTCTGCAAAC	59.524	47.619	0.00	0.00	0.00	2.93
110	131	8.907222	AAAATGCCAAAACTTATCTCACAATT	57.093	26.923	0.00	0.00	0.00	2.32
261	1854	4.697352	AGCAAAACGAGTGAATCTATGCTT	59.303	37.500	0.00	0.00	38.35	3.91
426	2024	3.548793	CCTCTGCTCTAGGGTCCAT	57.451	57.895	0.00	0.00	0.00	3.41
612	2674	6.825213	TCTCATGCAAGCATAGTACAAAAGAT	59.175	34.615	7.29	0.00	34.91	2.40
641	2703	3.737172	AAACGCCATGTCCGCTGC	61.737	61.111	3.27	0.00	0.00	5.25
658	2721	2.352805	CCACCACCTCCAAGGAGC	59.647	66.667	10.68	0.00	37.67	4.70
683	2746	7.567771	GCTCGTCTCCAAATATATTTTGTCTCG	60.568	40.741	8.01	10.48	0.00	4.04
688	2751	7.012327	TCTCCAAATATATTTTGTCTCGCCAAG	59.988	37.037	8.01	0.00	0.00	3.61
780	2844	1.293498	CTCACCCAGAAGGACACCG	59.707	63.158	0.00	0.00	39.89	4.94
816	2880	0.381801	CAGCCGCTCACTTGTTTTGT	59.618	50.000	0.00	0.00	0.00	2.83
857	2921	2.109126	GCCGCTCACTTGGATCACC	61.109	63.158	0.00	0.00	0.00	4.02
960	4359	3.304794	GCGTAGTGCAGGGTATCTCTTAG	60.305	52.174	0.00	0.00	45.45	2.18
961	4360	4.135306	CGTAGTGCAGGGTATCTCTTAGA	58.865	47.826	0.00	0.00	0.00	2.10
962	4361	4.023878	CGTAGTGCAGGGTATCTCTTAGAC	60.024	50.000	0.00	0.00	0.00	2.59
963	4362	4.258457	AGTGCAGGGTATCTCTTAGACT	57.742	45.455	0.00	0.00	0.00	3.24
964	4363	4.211920	AGTGCAGGGTATCTCTTAGACTC	58.788	47.826	0.00	0.00	0.00	3.36
992	4399	3.371166	GGTTAGCCTGCTACCCACAAATA	60.371	47.826	7.77	0.00	32.22	1.40
995	4402	2.308866	AGCCTGCTACCCACAAATAACT	59.691	45.455	0.00	0.00	0.00	2.24
1027	4434	3.767131	TGAGATGGTCAAGTCGGTCATTA	59.233	43.478	0.00	0.00	29.64	1.90
1269	4676	2.583319	GTAGCGCGCAGATGCAGA	60.583	61.111	35.10	4.32	42.21	4.26
1295	4702	3.285371	TCGGGAAGAAGACGAGGC	58.715	61.111	0.00	0.00	32.29	4.70
1296	4703	2.202623	CGGGAAGAAGACGAGGCG	60.203	66.667	0.00	0.00	0.00	5.52
1297	4704	2.184579	GGGAAGAAGACGAGGCGG	59.815	66.667	0.00	0.00	0.00	6.13
1298	4705	2.348888	GGGAAGAAGACGAGGCGGA	61.349	63.158	0.00	0.00	0.00	5.54
1299	4706	1.153804	GGAAGAAGACGAGGCGGAC	60.154	63.158	0.00	0.00	0.00	4.79
1300	4707	1.596895	GGAAGAAGACGAGGCGGACT	61.597	60.000	0.00	0.00	0.00	3.85
1326	4733	1.992557	AGCAGGTGGTAAGGAAATCCA	59.007	47.619	1.67	0.00	38.89	3.41
1383	4790	1.623311	TCATCTCCTCTTTCGTTGGCA	59.377	47.619	0.00	0.00	0.00	4.92
1619	6288	2.102925	CCGCATAGGGCCAATCAATTTT	59.897	45.455	6.18	0.00	40.31	1.82
1622	6291	4.680172	CGCATAGGGCCAATCAATTTTCAA	60.680	41.667	6.18	0.00	40.31	2.69
1680	6349	3.421844	GAAGATTGTAAGGTGCCCAAGT	58.578	45.455	0.00	0.00	0.00	3.16
2253	8155	6.372381	CCTCACACATGTAAATGTTCATCTGA	59.628	38.462	0.00	0.00	31.37	3.27
2309	8211	7.973388	GCGATAGACTATCTTCATCTTAATGCT	59.027	37.037	18.21	0.00	39.76	3.79
2374	8276	1.415289	TGCTCACCTATGCATGGAGAG	59.585	52.381	24.57	24.57	42.54	3.20
2480	8385	1.001746	CAGCAGGATCAGCGGATACAT	59.998	52.381	11.89	0.00	36.77	2.29
2508	8416	4.160439	TGAATCAGGTAGCTCGTTCATTCT	59.840	41.667	12.20	0.00	0.00	2.40
2513	8421	5.867716	TCAGGTAGCTCGTTCATTCTTAAAC	59.132	40.000	0.00	0.00	0.00	2.01
2515	8423	4.032558	GGTAGCTCGTTCATTCTTAAACCG	59.967	45.833	0.00	0.00	0.00	4.44
2680	9082	1.260544	AAAAAGGACATCTGCCCAGC	58.739	50.000	0.00	0.00	0.00	4.85
2681	9083	0.407139	AAAAGGACATCTGCCCAGCT	59.593	50.000	0.00	0.00	0.00	4.24
2695	9097	4.630111	TGCCCAGCTAAATTGTCAAAAAG	58.370	39.130	0.00	0.00	0.00	2.27
2738	9142	1.786937	AAAAATGACCACCTGTGCCA	58.213	45.000	0.00	0.00	0.00	4.92
2739	9143	1.039856	AAAATGACCACCTGTGCCAC	58.960	50.000	0.00	0.00	0.00	5.01
2795	10980	2.343506	CCATGTTGTCTGGCAGCAA	58.656	52.632	10.34	14.33	41.53	3.91
2952	11137	2.290367	CCATGCGTTGTGTCTGAAAAGA	59.710	45.455	0.00	0.00	0.00	2.52
2970	11155	3.842126	CGTCATGACACGCCGCTG	61.842	66.667	24.93	2.80	31.96	5.18
3012	11197	3.353836	GCCGTCCGTTGCACACAT	61.354	61.111	0.00	0.00	0.00	3.21
3125	14370	6.761099	TCACTAGAATCTGTCACTAGAACC	57.239	41.667	0.00	0.00	37.58	3.62
3126	14371	6.486056	TCACTAGAATCTGTCACTAGAACCT	58.514	40.000	0.00	0.00	37.58	3.50
3127	14372	6.375736	TCACTAGAATCTGTCACTAGAACCTG	59.624	42.308	0.00	0.00	37.58	4.00
3128	14373	4.464069	AGAATCTGTCACTAGAACCTGC	57.536	45.455	0.00	0.00	0.00	4.85
3129	14374	4.093011	AGAATCTGTCACTAGAACCTGCT	58.907	43.478	0.00	0.00	0.00	4.24
3357	14610	9.797556	GTACAAGTGGTTCTTTTAGACATTTTT	57.202	29.630	0.00	0.00	33.63	1.94
3525	14779	1.000394	TGGAATCACGCTCGAAGAACA	60.000	47.619	0.00	0.00	34.09	3.18
3531	14785	2.673862	TCACGCTCGAAGAACAAAAACA	59.326	40.909	0.00	0.00	34.09	2.83
3565	14820	9.481340	AACAAGAAAATAGAGAAGAAAAATGGC	57.519	29.630	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	0.385390	CCAGTTTGCAGAACACCACC	59.615	55.000	12.28	0.00	0.00	4.61
42	43	1.102154	CACCAGTTTGCAGAACACCA	58.898	50.000	12.28	0.00	0.00	4.17
46	47	3.202906	TCACTACACCAGTTTGCAGAAC	58.797	45.455	4.26	4.26	34.26	3.01
56	57	1.079127	CCCCGCTTCACTACACCAG	60.079	63.158	0.00	0.00	0.00	4.00
110	131	4.406649	TCTGACCATCATCTGCATCTAACA	59.593	41.667	0.00	0.00	0.00	2.41
150	173	5.775195	AGACTCGGTTGGTGATGATGATATA	59.225	40.000	0.00	0.00	0.00	0.86
152	175	3.960755	AGACTCGGTTGGTGATGATGATA	59.039	43.478	0.00	0.00	0.00	2.15
480	2248	6.214399	CCACCTTATCTTCAAGATACGTACC	58.786	44.000	6.62	0.00	36.96	3.34
488	2256	2.935238	GCACGCCACCTTATCTTCAAGA	60.935	50.000	0.00	0.00	0.00	3.02
492	2260	1.666189	GAAGCACGCCACCTTATCTTC	59.334	52.381	0.00	0.00	0.00	2.87
533	2301	7.224753	CACAATATACTTGTCGCCTCAACTAAT	59.775	37.037	0.00	0.00	0.00	1.73
641	2703	2.190488	GAGCTCCTTGGAGGTGGTGG	62.190	65.000	23.87	0.00	39.41	4.61
658	2721	7.567771	GCGAGACAAAATATATTTGGAGACGAG	60.568	40.741	17.80	6.44	33.92	4.18
764	2827	1.004918	GACGGTGTCCTTCTGGGTG	60.005	63.158	0.00	0.00	36.25	4.61
780	2844	3.181516	CGGCTGAAACATCTAAGCTTGAC	60.182	47.826	9.86	0.00	35.93	3.18
857	2921	0.588252	CTCCTTGCTTCGTTGGTGTG	59.412	55.000	0.00	0.00	0.00	3.82
960	4359	2.498078	AGCAGGCTAACCAGTAAGAGTC	59.502	50.000	0.00	0.00	39.06	3.36
961	4360	2.541466	AGCAGGCTAACCAGTAAGAGT	58.459	47.619	0.00	0.00	39.06	3.24
962	4361	3.181474	GGTAGCAGGCTAACCAGTAAGAG	60.181	52.174	5.01	0.00	39.06	2.85
963	4362	2.764572	GGTAGCAGGCTAACCAGTAAGA	59.235	50.000	5.01	0.00	39.06	2.10
964	4363	3.180891	GGTAGCAGGCTAACCAGTAAG	57.819	52.381	5.01	0.00	39.06	2.34
992	4399	3.051581	ACCATCTCAGCCATGGATAGTT	58.948	45.455	18.40	1.03	43.32	2.24
995	4402	2.693210	TGACCATCTCAGCCATGGATA	58.307	47.619	18.40	0.00	43.32	2.59
1027	4434	0.394352	CGGCTAACTGCTTCCCCAAT	60.394	55.000	0.00	0.00	42.39	3.16
1269	4676	3.729966	GTCTTCTTCCCGAGAAAGTTGT	58.270	45.455	0.00	0.00	43.56	3.32
1296	4703	4.767255	CACCTGCTCCGCCAGTCC	62.767	72.222	0.00	0.00	0.00	3.85
1297	4704	4.767255	CCACCTGCTCCGCCAGTC	62.767	72.222	0.00	0.00	0.00	3.51
1299	4706	2.859273	CTTACCACCTGCTCCGCCAG	62.859	65.000	0.00	0.00	0.00	4.85
1300	4707	2.925706	TTACCACCTGCTCCGCCA	60.926	61.111	0.00	0.00	0.00	5.69
1409	4816	1.377725	AATAGCTGCGCTGGCACTT	60.378	52.632	23.01	14.55	46.21	3.16
1619	6288	2.922503	TCCAGCCCACGCTCTTGA	60.923	61.111	0.00	0.00	43.95	3.02
1680	6349	2.712087	TGACCCCTAGGCAAAAACTGTA	59.288	45.455	2.05	0.00	36.11	2.74
2253	8155	2.492088	TCATCATCTCGTCGAGTTGGTT	59.508	45.455	25.55	14.98	32.22	3.67
2309	8211	1.341679	ACCTGGTACGACATAGCCTCA	60.342	52.381	0.00	0.00	0.00	3.86
2374	8276	1.335051	GCTTTCTTTCCGCACTTGTCC	60.335	52.381	0.00	0.00	0.00	4.02
2480	8385	2.959030	ACGAGCTACCTGATTCAGCATA	59.041	45.455	8.23	2.47	37.78	3.14
2508	8416	1.302383	CGCACAGCCCATCGGTTTAA	61.302	55.000	0.00	0.00	0.00	1.52
2513	8421	2.969238	GATCGCACAGCCCATCGG	60.969	66.667	0.00	0.00	0.00	4.18
2515	8423	1.596477	GAGGATCGCACAGCCCATC	60.596	63.158	0.00	0.00	0.00	3.51
2605	8516	6.895782	TCTATACAAAAAGGAGGGTGTATGG	58.104	40.000	5.62	3.28	37.65	2.74
2668	8582	3.019564	GACAATTTAGCTGGGCAGATGT	58.980	45.455	0.00	0.00	0.00	3.06
2680	9082	9.280174	TGTAGGTAGTCCTTTTTGACAATTTAG	57.720	33.333	0.00	0.00	42.12	1.85
2681	9083	9.629878	TTGTAGGTAGTCCTTTTTGACAATTTA	57.370	29.630	0.00	0.00	42.12	1.40
2695	9097	8.625786	TTTACATTTTCCTTTGTAGGTAGTCC	57.374	34.615	0.00	0.00	42.60	3.85
2746	10931	0.319900	ATATGTCGTCTGGCGCATCC	60.320	55.000	10.83	0.00	41.07	3.51
2952	11137	4.357947	AGCGGCGTGTCATGACGT	62.358	61.111	21.05	5.92	38.07	4.34
2970	11155	6.404074	CCTTTGACATCTTTTAGTGATGGAGC	60.404	42.308	8.32	0.00	43.88	4.70
3012	11197	7.841282	AAGTAATCATAGTCTAGCCTTAGCA	57.159	36.000	0.00	0.00	43.56	3.49
3117	14362	1.797025	GAAACGCAGCAGGTTCTAGT	58.203	50.000	7.52	0.00	35.11	2.57
3119	14364	2.822306	CGAAACGCAGCAGGTTCTA	58.178	52.632	11.55	0.00	35.77	2.10
3120	14365	3.642755	CGAAACGCAGCAGGTTCT	58.357	55.556	11.55	0.00	35.77	3.01
3252	14501	4.335647	CCTGCCGCCACCAACTCT	62.336	66.667	0.00	0.00	0.00	3.24
3256	14505	3.884774	AGAACCTGCCGCCACCAA	61.885	61.111	0.00	0.00	0.00	3.67
3279	14532	4.767255	CTGCCGCCACAGGGTCTC	62.767	72.222	0.00	0.00	36.17	3.36
3323	14576	2.708861	AGAACCACTTGTACCATGGTGA	59.291	45.455	28.17	11.07	46.18	4.02
3416	14670	5.568685	TGATGATCTAGCTAGGAATACGC	57.431	43.478	20.58	5.64	0.00	4.42

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.