Multiple sequence alignment - TraesCS3B01G525700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G525700 chr3B 100.000 6134 0 0 1 6134 768255940 768249807 0.000000e+00 11328.0
1 TraesCS3B01G525700 chr3B 98.802 167 1 1 5552 5718 609806246 609806411 4.650000e-76 296.0
2 TraesCS3B01G525700 chr3B 100.000 66 0 0 5551 5616 768250141 768250206 8.350000e-24 122.0
3 TraesCS3B01G525700 chr3B 100.000 66 0 0 5735 5800 768250325 768250390 8.350000e-24 122.0
4 TraesCS3B01G525700 chr3B 98.462 65 1 0 5735 5799 609806310 609806246 1.400000e-21 115.0
5 TraesCS3B01G525700 chr3B 100.000 32 0 0 5702 5733 768250208 768250239 6.640000e-05 60.2
6 TraesCS3B01G525700 chr3A 93.606 3378 155 23 1 3365 711402013 711405342 0.000000e+00 4985.0
7 TraesCS3B01G525700 chr3A 95.148 2164 80 14 3363 5502 711405395 711407557 0.000000e+00 3391.0
8 TraesCS3B01G525700 chr3A 92.012 338 18 8 5800 6131 711407639 711407973 3.350000e-127 466.0
9 TraesCS3B01G525700 chr3A 92.135 178 9 5 5544 5718 64070120 64070295 4.750000e-61 246.0
10 TraesCS3B01G525700 chr3A 92.308 169 8 5 5552 5718 17781763 17781598 1.030000e-57 235.0
11 TraesCS3B01G525700 chr3A 96.970 66 2 0 5736 5801 64070191 64070126 1.810000e-20 111.0
12 TraesCS3B01G525700 chr3A 95.385 65 3 0 5735 5799 17781699 17781763 3.020000e-18 104.0
13 TraesCS3B01G525700 chr3D 97.156 2567 72 1 800 3365 575848672 575851238 0.000000e+00 4335.0
14 TraesCS3B01G525700 chr3D 94.793 2151 84 16 3363 5502 575851291 575853424 0.000000e+00 3326.0
15 TraesCS3B01G525700 chr3D 92.012 338 16 5 5800 6132 575853479 575853810 1.200000e-126 464.0
16 TraesCS3B01G525700 chr3D 93.827 162 10 0 427 588 575848095 575848256 1.710000e-60 244.0
17 TraesCS3B01G525700 chr3D 91.558 154 11 2 624 776 575848256 575848408 1.730000e-50 211.0
18 TraesCS3B01G525700 chr4B 93.678 174 5 6 5549 5718 97250704 97250875 7.890000e-64 255.0
19 TraesCS3B01G525700 chr4B 98.413 63 1 0 5736 5798 97250771 97250709 1.810000e-20 111.0
20 TraesCS3B01G525700 chr5A 91.716 169 9 5 5552 5718 526373765 526373600 4.780000e-56 230.0
21 TraesCS3B01G525700 chr7A 92.157 153 7 5 5564 5714 43498186 43498335 1.730000e-50 211.0
22 TraesCS3B01G525700 chr6B 88.166 169 16 4 5552 5718 701607190 701607356 1.350000e-46 198.0
23 TraesCS3B01G525700 chr6B 92.308 65 5 0 5735 5799 701607254 701607190 6.550000e-15 93.5
24 TraesCS3B01G525700 chrUn 87.619 105 11 2 5549 5652 31580151 31580254 3.000000e-23 121.0
25 TraesCS3B01G525700 chr1B 100.000 30 0 0 5771 5800 615581561 615581590 8.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G525700 chr3B 768249807 768255940 6133 True 11328.000000 11328 100.000000 1 6134 1 chr3B.!!$R2 6133
1 TraesCS3B01G525700 chr3A 711402013 711407973 5960 False 2947.333333 4985 93.588667 1 6131 3 chr3A.!!$F3 6130
2 TraesCS3B01G525700 chr3D 575848095 575853810 5715 False 1716.000000 4335 93.869200 427 6132 5 chr3D.!!$F1 5705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 446 0.175760 TGATCGAGTAACCTGCTGGC 59.824 55.000 9.95 0.0 36.63 4.85 F
738 785 0.541063 TTCCCGGGGGCTTTCTTTTC 60.541 55.000 23.50 0.0 34.68 2.29 F
1688 1976 1.135915 TGCGCACAAAATTGTCTTGGT 59.864 42.857 5.66 0.0 39.91 3.67 F
2506 2794 0.601558 CTGCATTGGTTCAGCTGCTT 59.398 50.000 9.47 0.0 35.66 3.91 F
3165 3453 2.425539 TGAGCATCACATTCGAAAGCA 58.574 42.857 0.00 0.0 42.56 3.91 F
4954 5305 0.318441 TGAGAACTGGACAAGCCTCG 59.682 55.000 0.00 0.0 37.63 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 2202 0.035630 ACTCCAGCAGTGAATCCAGC 60.036 55.000 0.00 0.0 32.26 4.85 R
2164 2452 1.472552 GGCAACAAAACCTTGTCCACC 60.473 52.381 0.00 0.0 45.25 4.61 R
3525 3869 2.257691 TGCATGCCATTTTGCAACTT 57.742 40.000 16.68 0.0 45.30 2.66 R
4478 4822 1.703411 TTGAAACCAGAGCCTTTGGG 58.297 50.000 6.21 0.0 40.11 4.12 R
4986 5337 0.251922 ATGATGCAAACTGCCCTGGT 60.252 50.000 0.00 0.0 44.23 4.00 R
5766 6173 0.388134 CCTACGTAGCTGTTGTGCGT 60.388 55.000 17.41 0.0 39.23 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.841556 TGACGAGGTGAGGGCCTTT 60.842 57.895 7.89 0.00 39.34 3.11
118 119 7.459125 AGCTATAGAATGGATTGTTCTGGGATA 59.541 37.037 3.21 0.00 36.63 2.59
121 122 5.126067 AGAATGGATTGTTCTGGGATAACG 58.874 41.667 0.00 0.00 34.77 3.18
123 124 5.623956 ATGGATTGTTCTGGGATAACGTA 57.376 39.130 0.00 0.00 0.00 3.57
141 142 3.119849 ACGTAGTGATGAAATTTGCTGCC 60.120 43.478 0.00 0.00 42.51 4.85
142 143 3.119884 CGTAGTGATGAAATTTGCTGCCA 60.120 43.478 0.00 0.00 0.00 4.92
147 148 7.350744 AGTGATGAAATTTGCTGCCATATAA 57.649 32.000 0.00 0.00 0.00 0.98
149 150 7.924412 AGTGATGAAATTTGCTGCCATATAAAG 59.076 33.333 0.00 0.00 0.00 1.85
150 151 6.702723 TGATGAAATTTGCTGCCATATAAAGC 59.297 34.615 0.00 0.00 37.46 3.51
151 152 6.224665 TGAAATTTGCTGCCATATAAAGCT 57.775 33.333 0.00 0.00 37.82 3.74
152 153 6.044046 TGAAATTTGCTGCCATATAAAGCTG 58.956 36.000 0.00 0.61 37.82 4.24
153 154 5.603170 AATTTGCTGCCATATAAAGCTGT 57.397 34.783 0.00 0.00 37.82 4.40
154 155 4.374843 TTTGCTGCCATATAAAGCTGTG 57.625 40.909 0.00 0.00 37.82 3.66
155 156 3.003394 TGCTGCCATATAAAGCTGTGT 57.997 42.857 0.00 0.00 37.82 3.72
156 157 4.149511 TGCTGCCATATAAAGCTGTGTA 57.850 40.909 0.00 0.00 37.82 2.90
157 158 4.717877 TGCTGCCATATAAAGCTGTGTAT 58.282 39.130 0.00 0.00 37.82 2.29
158 159 4.756642 TGCTGCCATATAAAGCTGTGTATC 59.243 41.667 0.00 0.00 37.82 2.24
159 160 4.999950 GCTGCCATATAAAGCTGTGTATCT 59.000 41.667 0.00 0.00 34.05 1.98
160 161 6.166279 GCTGCCATATAAAGCTGTGTATCTA 58.834 40.000 0.00 0.00 34.05 1.98
161 162 6.091441 GCTGCCATATAAAGCTGTGTATCTAC 59.909 42.308 0.00 0.00 34.05 2.59
162 163 7.061566 TGCCATATAAAGCTGTGTATCTACA 57.938 36.000 0.00 0.00 0.00 2.74
163 164 7.505258 TGCCATATAAAGCTGTGTATCTACAA 58.495 34.615 0.00 0.00 38.04 2.41
164 165 8.156820 TGCCATATAAAGCTGTGTATCTACAAT 58.843 33.333 0.00 0.00 38.04 2.71
165 166 8.446273 GCCATATAAAGCTGTGTATCTACAATG 58.554 37.037 0.00 0.00 38.04 2.82
166 167 8.939929 CCATATAAAGCTGTGTATCTACAATGG 58.060 37.037 0.00 0.00 38.04 3.16
167 168 9.710900 CATATAAAGCTGTGTATCTACAATGGA 57.289 33.333 0.00 0.00 38.04 3.41
168 169 9.935241 ATATAAAGCTGTGTATCTACAATGGAG 57.065 33.333 0.00 0.00 38.04 3.86
169 170 5.683876 AAGCTGTGTATCTACAATGGAGT 57.316 39.130 0.00 0.00 38.04 3.85
170 171 5.683876 AGCTGTGTATCTACAATGGAGTT 57.316 39.130 0.00 0.00 38.04 3.01
193 194 5.488262 TGCTCTTGCATATATGGCTAGAA 57.512 39.130 14.51 3.01 45.31 2.10
194 195 5.868454 TGCTCTTGCATATATGGCTAGAAA 58.132 37.500 14.51 7.03 45.31 2.52
195 196 5.936372 TGCTCTTGCATATATGGCTAGAAAG 59.064 40.000 14.51 8.39 45.31 2.62
196 197 5.353678 GCTCTTGCATATATGGCTAGAAAGG 59.646 44.000 14.51 7.86 41.31 3.11
197 198 6.686484 TCTTGCATATATGGCTAGAAAGGA 57.314 37.500 14.51 0.00 39.52 3.36
198 199 6.705302 TCTTGCATATATGGCTAGAAAGGAG 58.295 40.000 14.51 0.00 39.52 3.69
210 211 2.621070 AGAAAGGAGTCTGCCCTTGTA 58.379 47.619 0.00 0.00 42.82 2.41
212 213 3.054802 AGAAAGGAGTCTGCCCTTGTATG 60.055 47.826 0.00 0.00 42.82 2.39
224 225 3.380320 GCCCTTGTATGTTACCATGAACC 59.620 47.826 0.00 0.00 32.29 3.62
225 226 4.855340 CCCTTGTATGTTACCATGAACCT 58.145 43.478 0.00 0.00 32.29 3.50
239 240 3.057969 TGAACCTGCTATTGGTGTCAG 57.942 47.619 0.00 0.00 37.93 3.51
240 241 1.740025 GAACCTGCTATTGGTGTCAGC 59.260 52.381 0.00 0.00 37.93 4.26
243 244 2.571653 ACCTGCTATTGGTGTCAGCTTA 59.428 45.455 3.30 0.00 36.30 3.09
247 248 6.000219 CCTGCTATTGGTGTCAGCTTATATT 59.000 40.000 3.30 0.00 36.26 1.28
271 280 2.061773 ACGAACTTGCTCTTGATGTCG 58.938 47.619 0.00 0.00 0.00 4.35
273 282 2.926200 CGAACTTGCTCTTGATGTCGAT 59.074 45.455 0.00 0.00 0.00 3.59
275 284 4.143030 CGAACTTGCTCTTGATGTCGATTT 60.143 41.667 0.00 0.00 0.00 2.17
279 288 2.743664 TGCTCTTGATGTCGATTTGTGG 59.256 45.455 0.00 0.00 0.00 4.17
297 306 1.276138 TGGGTACTCTGTGTGAGCATG 59.724 52.381 0.00 0.00 46.41 4.06
316 325 0.586802 GTGTCCGAGTTTGTTGAGGC 59.413 55.000 0.00 0.00 0.00 4.70
319 328 1.961277 CCGAGTTTGTTGAGGCGCT 60.961 57.895 7.64 0.00 0.00 5.92
322 331 1.732259 CGAGTTTGTTGAGGCGCTAAT 59.268 47.619 7.64 0.00 0.00 1.73
324 333 2.084546 AGTTTGTTGAGGCGCTAATCC 58.915 47.619 7.64 0.00 0.00 3.01
336 345 3.211045 GCGCTAATCCCAAATACAGGAA 58.789 45.455 0.00 0.00 35.30 3.36
338 347 4.497507 GCGCTAATCCCAAATACAGGAAAC 60.498 45.833 0.00 0.00 35.30 2.78
347 356 7.662897 TCCCAAATACAGGAAACAAAATGTAC 58.337 34.615 0.00 0.00 31.41 2.90
348 357 7.507616 TCCCAAATACAGGAAACAAAATGTACT 59.492 33.333 0.00 0.00 31.41 2.73
361 408 7.539712 ACAAAATGTACTTATGATCACTCCG 57.460 36.000 0.00 0.00 0.00 4.63
362 409 7.327975 ACAAAATGTACTTATGATCACTCCGA 58.672 34.615 0.00 0.00 0.00 4.55
365 412 8.964476 AAATGTACTTATGATCACTCCGATTT 57.036 30.769 0.00 0.00 33.17 2.17
378 425 1.004161 TCCGATTTCATGTCTGCCCAA 59.996 47.619 0.00 0.00 0.00 4.12
382 429 3.129113 CGATTTCATGTCTGCCCAATTGA 59.871 43.478 7.12 0.00 0.00 2.57
384 431 4.724074 TTTCATGTCTGCCCAATTGATC 57.276 40.909 7.12 0.00 0.00 2.92
385 432 2.291365 TCATGTCTGCCCAATTGATCG 58.709 47.619 7.12 0.00 0.00 3.69
386 433 2.093021 TCATGTCTGCCCAATTGATCGA 60.093 45.455 7.12 0.00 0.00 3.59
387 434 2.028420 TGTCTGCCCAATTGATCGAG 57.972 50.000 7.12 0.00 0.00 4.04
388 435 1.278985 TGTCTGCCCAATTGATCGAGT 59.721 47.619 7.12 0.00 0.00 4.18
389 436 2.499693 TGTCTGCCCAATTGATCGAGTA 59.500 45.455 7.12 0.00 0.00 2.59
390 437 3.055458 TGTCTGCCCAATTGATCGAGTAA 60.055 43.478 7.12 0.00 0.00 2.24
391 438 3.309954 GTCTGCCCAATTGATCGAGTAAC 59.690 47.826 7.12 0.00 0.00 2.50
392 439 2.614057 CTGCCCAATTGATCGAGTAACC 59.386 50.000 7.12 0.00 0.00 2.85
393 440 2.238646 TGCCCAATTGATCGAGTAACCT 59.761 45.455 7.12 0.00 0.00 3.50
394 441 2.614057 GCCCAATTGATCGAGTAACCTG 59.386 50.000 7.12 0.00 0.00 4.00
395 442 2.614057 CCCAATTGATCGAGTAACCTGC 59.386 50.000 7.12 0.00 0.00 4.85
396 443 3.535561 CCAATTGATCGAGTAACCTGCT 58.464 45.455 7.12 0.00 0.00 4.24
397 444 3.310774 CCAATTGATCGAGTAACCTGCTG 59.689 47.826 7.12 0.00 0.00 4.41
398 445 2.672961 TTGATCGAGTAACCTGCTGG 57.327 50.000 8.29 8.29 39.83 4.85
399 446 0.175760 TGATCGAGTAACCTGCTGGC 59.824 55.000 9.95 0.00 36.63 4.85
400 447 0.872021 GATCGAGTAACCTGCTGGCG 60.872 60.000 9.95 4.93 36.63 5.69
401 448 2.298158 ATCGAGTAACCTGCTGGCGG 62.298 60.000 9.95 0.00 36.63 6.13
408 455 2.514592 CCTGCTGGCGGGTGTATG 60.515 66.667 11.97 0.00 37.68 2.39
409 456 2.268920 CTGCTGGCGGGTGTATGT 59.731 61.111 0.00 0.00 0.00 2.29
410 457 2.046411 TGCTGGCGGGTGTATGTG 60.046 61.111 0.00 0.00 0.00 3.21
411 458 3.508840 GCTGGCGGGTGTATGTGC 61.509 66.667 0.00 0.00 0.00 4.57
412 459 3.195002 CTGGCGGGTGTATGTGCG 61.195 66.667 0.00 0.00 0.00 5.34
416 463 3.195002 CGGGTGTATGTGCGCCTG 61.195 66.667 4.18 0.00 38.94 4.85
417 464 3.508840 GGGTGTATGTGCGCCTGC 61.509 66.667 4.18 0.00 38.94 4.85
427 474 3.034030 GCGCCTGCAAGAGTTGTT 58.966 55.556 0.00 0.00 42.15 2.83
428 475 2.244000 GCGCCTGCAAGAGTTGTTA 58.756 52.632 0.00 0.00 42.15 2.41
429 476 0.804989 GCGCCTGCAAGAGTTGTTAT 59.195 50.000 0.00 0.00 42.15 1.89
430 477 1.200020 GCGCCTGCAAGAGTTGTTATT 59.800 47.619 0.00 0.00 42.15 1.40
431 478 2.418628 GCGCCTGCAAGAGTTGTTATTA 59.581 45.455 0.00 0.00 42.15 0.98
432 479 3.727970 GCGCCTGCAAGAGTTGTTATTAC 60.728 47.826 0.00 0.00 42.15 1.89
433 480 3.435327 CGCCTGCAAGAGTTGTTATTACA 59.565 43.478 0.00 0.00 34.07 2.41
503 550 2.814336 CAGTTAGGCAAGAAACTGTCCC 59.186 50.000 6.97 0.00 44.83 4.46
525 572 9.944376 GTCCCTAATAATGATGCTATTAACTGA 57.056 33.333 0.00 0.00 0.00 3.41
568 615 5.234972 GGTTTGTTCCAGCTTCTGAATTTTG 59.765 40.000 0.00 0.00 32.44 2.44
575 622 2.301009 AGCTTCTGAATTTTGGGCCAAG 59.699 45.455 19.90 6.69 0.00 3.61
588 635 1.688735 GGGCCAAGAATAATCCAAGGC 59.311 52.381 4.39 0.00 36.85 4.35
605 652 1.576421 GCTTGGTTTGAGCGTCTGG 59.424 57.895 0.00 0.00 0.00 3.86
606 653 1.856265 GCTTGGTTTGAGCGTCTGGG 61.856 60.000 0.00 0.00 0.00 4.45
702 749 7.715265 AACACATGTCGATTAATCAGGATAC 57.285 36.000 15.57 5.80 0.00 2.24
724 771 4.181578 CTGTTACAGTCTATGGTTTCCCG 58.818 47.826 3.88 0.00 0.00 5.14
738 785 0.541063 TTCCCGGGGGCTTTCTTTTC 60.541 55.000 23.50 0.00 34.68 2.29
762 809 3.941483 ACCATTGTTTCTATGCGAAGAGG 59.059 43.478 0.00 0.00 32.21 3.69
782 829 2.514803 GGGCTTAAGCTGAAAGAACCA 58.485 47.619 25.88 0.00 41.70 3.67
784 831 2.229062 GGCTTAAGCTGAAAGAACCACC 59.771 50.000 25.88 1.75 41.70 4.61
786 833 3.756117 CTTAAGCTGAAAGAACCACCCT 58.244 45.455 3.49 0.00 34.07 4.34
848 1135 9.671279 TGTGTCTGATATGATTTCTGTATGTTT 57.329 29.630 0.00 0.00 0.00 2.83
870 1157 7.559897 TGTTTTGAAATTTCTTCTGTACCTCCT 59.440 33.333 18.64 0.00 0.00 3.69
939 1227 4.156556 TGCATCCACTTGCTCTTGTTATTC 59.843 41.667 0.00 0.00 43.18 1.75
1020 1308 6.348050 GCACAATGAGAGTAGAGGACAAAAAG 60.348 42.308 0.00 0.00 0.00 2.27
1071 1359 4.689549 TGGGGCGAGGAGTTCCGA 62.690 66.667 0.00 0.00 42.08 4.55
1406 1694 1.229368 TCGACCCTGATCCCAACCA 60.229 57.895 0.00 0.00 0.00 3.67
1446 1734 3.499406 TCCAGCTGGGACAAGCAT 58.501 55.556 32.23 0.00 42.15 3.79
1614 1902 4.754114 GTGATTGCAGACTTTCTTGAGAGT 59.246 41.667 0.00 0.00 0.00 3.24
1616 1904 5.824624 TGATTGCAGACTTTCTTGAGAGTTT 59.175 36.000 0.00 0.00 0.00 2.66
1665 1953 5.712917 TGTTGGTAGTGAAAGAAAGGTTGTT 59.287 36.000 0.00 0.00 0.00 2.83
1688 1976 1.135915 TGCGCACAAAATTGTCTTGGT 59.864 42.857 5.66 0.00 39.91 3.67
1873 2161 4.202182 TGGTGGAGACCGTTAATGTATAGC 60.202 45.833 0.00 0.00 46.62 2.97
1914 2202 2.758089 GCAGATTGCGGAGTGGCAG 61.758 63.158 0.00 0.00 44.94 4.85
2242 2530 3.016736 CCATTCGCCAAGGTACATCTTT 58.983 45.455 0.00 0.00 0.00 2.52
2251 2539 2.537143 AGGTACATCTTTGTCCCGACT 58.463 47.619 0.00 0.00 36.96 4.18
2312 2600 2.917701 TCACATTTTGGCATAGTGCG 57.082 45.000 0.56 0.00 46.21 5.34
2475 2763 4.354387 TGGGGAACTTAAAGTGGATAACCA 59.646 41.667 0.00 0.00 44.76 3.67
2506 2794 0.601558 CTGCATTGGTTCAGCTGCTT 59.398 50.000 9.47 0.00 35.66 3.91
2526 2814 6.948353 TGCTTTTATTATCAGATCAGTTCGC 58.052 36.000 0.00 0.00 0.00 4.70
2594 2882 3.753797 CCTTTCAGAGGTACCTTTGCTTC 59.246 47.826 24.39 7.93 40.95 3.86
2610 2898 6.238593 CCTTTGCTTCCTCTTACATAGAATGC 60.239 42.308 0.00 0.00 30.91 3.56
2630 2918 4.331108 TGCTACACCAAGTGATGCAATTA 58.669 39.130 13.57 0.00 39.99 1.40
3119 3407 5.050769 CGAATCACGTCCATGAGAAAATAGG 60.051 44.000 0.00 0.00 37.22 2.57
3165 3453 2.425539 TGAGCATCACATTCGAAAGCA 58.574 42.857 0.00 0.00 42.56 3.91
3302 3590 5.878406 TGGATTTTTCCTACCAAGCAAAA 57.122 34.783 0.00 0.00 0.00 2.44
3305 3593 6.551601 TGGATTTTTCCTACCAAGCAAAAGTA 59.448 34.615 0.00 0.00 0.00 2.24
3340 3628 7.645402 AGTCTTTGTAAAATGGTAACTTTCCG 58.355 34.615 0.00 0.00 32.70 4.30
3350 3638 4.997565 TGGTAACTTTCCGGTAGTAATCG 58.002 43.478 11.45 0.00 37.61 3.34
3374 3718 8.425703 TCGAATCCTACAATTGTCATATGGTTA 58.574 33.333 15.85 0.00 0.00 2.85
3383 3727 8.278639 ACAATTGTCATATGGTTAGGTATGGAA 58.721 33.333 4.92 0.00 0.00 3.53
3451 3795 4.767578 ATGCTGAACATCAGTGGTATCT 57.232 40.909 8.97 0.00 45.94 1.98
3525 3869 2.886523 ACTGCATGCTAAGTTTCTTGCA 59.113 40.909 20.33 13.70 39.83 4.08
3974 4318 6.265422 AGAAAAGTAACCTAGCAAAGCACATT 59.735 34.615 0.00 0.00 0.00 2.71
4221 4565 6.584185 TTTATGAACCTTAAACCTTCCAGC 57.416 37.500 0.00 0.00 0.00 4.85
4478 4822 1.997606 CCAAATTCGAGGTACACGGAC 59.002 52.381 10.77 0.00 43.87 4.79
4535 4879 5.840243 TGATGTTATTGAGAATGCTTGGG 57.160 39.130 0.00 0.00 0.00 4.12
4544 4888 5.138125 TGAGAATGCTTGGGAAACATTTC 57.862 39.130 0.00 0.00 34.28 2.17
4601 4945 2.226437 GACATGTTGGGACACATGACAC 59.774 50.000 18.36 7.43 44.49 3.67
4702 5046 4.766891 CCACCAGGTTGTTTATGTGAAGAT 59.233 41.667 0.00 0.00 0.00 2.40
4759 5104 8.145316 AGCAAAGACGTTAAGTTATTGTGTTA 57.855 30.769 0.00 0.00 33.77 2.41
4954 5305 0.318441 TGAGAACTGGACAAGCCTCG 59.682 55.000 0.00 0.00 37.63 4.63
5124 5475 0.478942 TCCTGGAGCTCTACGGCTAT 59.521 55.000 14.64 0.00 43.20 2.97
5172 5524 5.673717 CGTGTAAGATGTTTTCGTCGTTTTT 59.326 36.000 0.00 0.00 40.47 1.94
5247 5601 4.671377 CTGTTTACACACAGCACAAACAT 58.329 39.130 0.00 0.00 37.96 2.71
5337 5697 8.801299 TGTAACAAGCTTGAATAAATGATTCCA 58.199 29.630 32.50 7.56 43.04 3.53
5340 5700 7.092716 ACAAGCTTGAATAAATGATTCCACAC 58.907 34.615 32.50 0.00 43.04 3.82
5383 5745 6.738114 TGTCTGTTTATTTTGCTTCTTCCTG 58.262 36.000 0.00 0.00 0.00 3.86
5401 5778 5.042463 TCCTGGTTGTTGTCTGAAATGTA 57.958 39.130 0.00 0.00 0.00 2.29
5402 5779 5.630121 TCCTGGTTGTTGTCTGAAATGTAT 58.370 37.500 0.00 0.00 0.00 2.29
5403 5780 5.473162 TCCTGGTTGTTGTCTGAAATGTATG 59.527 40.000 0.00 0.00 0.00 2.39
5405 5782 6.151648 CCTGGTTGTTGTCTGAAATGTATGAT 59.848 38.462 0.00 0.00 0.00 2.45
5406 5783 6.912082 TGGTTGTTGTCTGAAATGTATGATG 58.088 36.000 0.00 0.00 0.00 3.07
5422 5799 7.350744 TGTATGATGGCATAAAGCTTTGATT 57.649 32.000 22.02 3.71 44.79 2.57
5445 5823 2.869192 GCTTTGCCTAGCATCTCAGTAC 59.131 50.000 2.55 0.00 38.76 2.73
5453 5831 5.278758 GCCTAGCATCTCAGTACCTCTTTAG 60.279 48.000 0.00 0.00 0.00 1.85
5455 5833 6.206634 CCTAGCATCTCAGTACCTCTTTAGAG 59.793 46.154 0.00 0.00 41.71 2.43
5457 5835 6.664714 AGCATCTCAGTACCTCTTTAGAGTA 58.335 40.000 6.06 0.00 40.48 2.59
5458 5836 6.544564 AGCATCTCAGTACCTCTTTAGAGTAC 59.455 42.308 6.06 8.15 40.48 2.73
5460 5838 7.468084 GCATCTCAGTACCTCTTTAGAGTACTG 60.468 44.444 24.66 24.66 45.35 2.74
5502 5880 2.033299 ACCGTTGCACAACTTTCTCATG 59.967 45.455 11.44 0.00 39.08 3.07
5506 5913 4.847757 CGTTGCACAACTTTCTCATGTATG 59.152 41.667 11.44 0.00 39.08 2.39
5516 5923 9.605275 CAACTTTCTCATGTATGATCCTTCTAA 57.395 33.333 0.00 0.00 36.02 2.10
5532 5939 8.763984 ATCCTTCTAAGAAAAGACTACGGATA 57.236 34.615 0.00 0.00 0.00 2.59
5542 5949 2.294791 AGACTACGGATAGACAGCATGC 59.705 50.000 10.51 10.51 33.17 4.06
5544 5951 2.223829 ACTACGGATAGACAGCATGCAC 60.224 50.000 21.98 10.82 33.17 4.57
5551 5958 0.462581 AGACAGCATGCACGTATGGG 60.463 55.000 21.98 1.03 42.53 4.00
5553 5960 0.462581 ACAGCATGCACGTATGGGAG 60.463 55.000 21.98 0.00 42.53 4.30
5555 5962 1.819208 GCATGCACGTATGGGAGCA 60.819 57.895 14.21 0.00 41.73 4.26
5556 5963 1.375853 GCATGCACGTATGGGAGCAA 61.376 55.000 14.21 0.00 40.76 3.91
5559 5966 1.356624 GCACGTATGGGAGCAATGC 59.643 57.895 0.00 0.00 0.00 3.56
5560 5967 1.097547 GCACGTATGGGAGCAATGCT 61.098 55.000 7.79 7.79 43.88 3.79
5561 5968 1.810031 GCACGTATGGGAGCAATGCTA 60.810 52.381 8.12 0.00 39.88 3.49
5562 5969 1.867233 CACGTATGGGAGCAATGCTAC 59.133 52.381 9.40 9.40 39.88 3.58
5563 5970 1.484653 ACGTATGGGAGCAATGCTACA 59.515 47.619 20.28 16.37 42.18 2.74
5564 5971 1.867233 CGTATGGGAGCAATGCTACAC 59.133 52.381 20.28 8.05 42.18 2.90
5565 5972 2.222027 GTATGGGAGCAATGCTACACC 58.778 52.381 20.28 16.61 42.18 4.16
5566 5973 0.921896 ATGGGAGCAATGCTACACCT 59.078 50.000 20.28 0.00 42.18 4.00
5567 5974 1.578897 TGGGAGCAATGCTACACCTA 58.421 50.000 20.28 6.60 42.18 3.08
5568 5975 1.209504 TGGGAGCAATGCTACACCTAC 59.790 52.381 20.28 1.52 42.18 3.18
5569 5976 1.571919 GGAGCAATGCTACACCTACG 58.428 55.000 13.46 0.00 39.71 3.51
5570 5977 1.134788 GGAGCAATGCTACACCTACGT 60.135 52.381 13.46 0.00 39.71 3.57
5571 5978 2.100252 GGAGCAATGCTACACCTACGTA 59.900 50.000 13.46 0.00 39.71 3.57
5572 5979 3.372954 GAGCAATGCTACACCTACGTAG 58.627 50.000 15.92 15.92 39.88 3.51
5579 5986 3.844577 CTACACCTACGTAGCTGTTGT 57.155 47.619 24.48 20.01 32.97 3.32
5580 5987 2.433868 ACACCTACGTAGCTGTTGTG 57.566 50.000 17.41 19.29 32.71 3.33
5581 5988 1.068474 CACCTACGTAGCTGTTGTGC 58.932 55.000 17.41 0.00 0.00 4.57
5582 5989 0.388134 ACCTACGTAGCTGTTGTGCG 60.388 55.000 17.41 2.78 38.13 5.34
5583 5990 0.388134 CCTACGTAGCTGTTGTGCGT 60.388 55.000 17.41 0.00 39.23 5.24
5584 5991 1.135603 CCTACGTAGCTGTTGTGCGTA 60.136 52.381 17.41 0.00 37.05 4.42
5585 5992 2.587956 CTACGTAGCTGTTGTGCGTAA 58.412 47.619 10.14 0.00 37.54 3.18
5586 5993 1.855513 ACGTAGCTGTTGTGCGTAAA 58.144 45.000 0.00 0.00 38.13 2.01
5587 5994 1.523934 ACGTAGCTGTTGTGCGTAAAC 59.476 47.619 0.00 0.00 38.13 2.01
5588 5995 1.790623 CGTAGCTGTTGTGCGTAAACT 59.209 47.619 0.00 0.00 38.13 2.66
5589 5996 2.981805 CGTAGCTGTTGTGCGTAAACTA 59.018 45.455 0.00 0.00 38.13 2.24
5590 5997 3.426191 CGTAGCTGTTGTGCGTAAACTAA 59.574 43.478 0.00 0.00 38.13 2.24
5591 5998 3.872560 AGCTGTTGTGCGTAAACTAAC 57.127 42.857 0.00 0.00 38.13 2.34
5592 5999 2.220133 AGCTGTTGTGCGTAAACTAACG 59.780 45.455 0.00 0.00 45.58 3.18
5593 6000 2.033492 GCTGTTGTGCGTAAACTAACGT 60.033 45.455 0.00 0.00 44.64 3.99
5594 6001 3.182173 GCTGTTGTGCGTAAACTAACGTA 59.818 43.478 0.00 0.00 44.64 3.57
5595 6002 4.317980 GCTGTTGTGCGTAAACTAACGTAA 60.318 41.667 0.00 0.00 44.64 3.18
5596 6003 5.064562 TGTTGTGCGTAAACTAACGTAAC 57.935 39.130 0.00 3.24 44.64 2.50
5597 6004 4.564372 TGTTGTGCGTAAACTAACGTAACA 59.436 37.500 0.00 9.90 44.64 2.41
5598 6005 4.952445 TGTGCGTAAACTAACGTAACAG 57.048 40.909 0.00 0.00 44.64 3.16
5599 6006 3.182173 TGTGCGTAAACTAACGTAACAGC 59.818 43.478 0.00 0.00 44.64 4.40
5600 6007 3.426525 GTGCGTAAACTAACGTAACAGCT 59.573 43.478 0.00 0.00 44.64 4.24
5601 6008 4.050553 TGCGTAAACTAACGTAACAGCTT 58.949 39.130 0.00 0.00 44.64 3.74
5602 6009 5.116983 GTGCGTAAACTAACGTAACAGCTTA 59.883 40.000 0.00 0.00 44.64 3.09
5603 6010 5.343058 TGCGTAAACTAACGTAACAGCTTAG 59.657 40.000 0.00 0.00 44.64 2.18
5604 6011 5.220098 GCGTAAACTAACGTAACAGCTTAGG 60.220 44.000 0.00 0.00 44.64 2.69
5605 6012 5.858581 CGTAAACTAACGTAACAGCTTAGGT 59.141 40.000 0.00 0.00 38.07 3.08
5606 6013 6.183359 CGTAAACTAACGTAACAGCTTAGGTG 60.183 42.308 10.09 10.09 38.07 4.00
5607 6014 4.861102 ACTAACGTAACAGCTTAGGTGT 57.139 40.909 11.59 11.59 46.58 4.16
5608 6015 4.802999 ACTAACGTAACAGCTTAGGTGTC 58.197 43.478 17.63 5.42 43.73 3.67
5609 6016 4.522022 ACTAACGTAACAGCTTAGGTGTCT 59.478 41.667 17.63 10.28 43.73 3.41
5610 6017 4.332428 AACGTAACAGCTTAGGTGTCTT 57.668 40.909 17.63 5.78 43.73 3.01
5611 6018 4.332428 ACGTAACAGCTTAGGTGTCTTT 57.668 40.909 17.63 5.05 43.73 2.52
5612 6019 4.700700 ACGTAACAGCTTAGGTGTCTTTT 58.299 39.130 17.63 4.69 43.73 2.27
5613 6020 5.121105 ACGTAACAGCTTAGGTGTCTTTTT 58.879 37.500 17.63 4.31 43.73 1.94
5633 6040 4.316025 TTTCTGTTGGAGGGAATTAGGG 57.684 45.455 0.00 0.00 0.00 3.53
5634 6041 2.205342 TCTGTTGGAGGGAATTAGGGG 58.795 52.381 0.00 0.00 0.00 4.79
5635 6042 1.215423 CTGTTGGAGGGAATTAGGGGG 59.785 57.143 0.00 0.00 0.00 5.40
5636 6043 1.203635 TGTTGGAGGGAATTAGGGGGA 60.204 52.381 0.00 0.00 0.00 4.81
5637 6044 1.495148 GTTGGAGGGAATTAGGGGGAG 59.505 57.143 0.00 0.00 0.00 4.30
5638 6045 0.029059 TGGAGGGAATTAGGGGGAGG 60.029 60.000 0.00 0.00 0.00 4.30
5639 6046 0.772517 GGAGGGAATTAGGGGGAGGG 60.773 65.000 0.00 0.00 0.00 4.30
5640 6047 0.271005 GAGGGAATTAGGGGGAGGGA 59.729 60.000 0.00 0.00 0.00 4.20
5641 6048 0.028955 AGGGAATTAGGGGGAGGGAC 60.029 60.000 0.00 0.00 0.00 4.46
5642 6049 1.066585 GGGAATTAGGGGGAGGGACC 61.067 65.000 0.00 0.00 38.08 4.46
5658 6065 3.163616 GGACCCACCCAGTTAAAATCA 57.836 47.619 0.00 0.00 0.00 2.57
5659 6066 3.089284 GGACCCACCCAGTTAAAATCAG 58.911 50.000 0.00 0.00 0.00 2.90
5660 6067 3.089284 GACCCACCCAGTTAAAATCAGG 58.911 50.000 0.00 0.00 0.00 3.86
5661 6068 2.225267 ACCCACCCAGTTAAAATCAGGG 60.225 50.000 0.00 0.00 45.20 4.45
5662 6069 2.456577 CCACCCAGTTAAAATCAGGGG 58.543 52.381 0.00 0.00 43.96 4.79
5663 6070 2.456577 CACCCAGTTAAAATCAGGGGG 58.543 52.381 0.00 0.00 43.96 5.40
5678 6085 4.854042 GGGGGTGGAGGGATTAGT 57.146 61.111 0.00 0.00 0.00 2.24
5679 6086 3.038428 GGGGGTGGAGGGATTAGTT 57.962 57.895 0.00 0.00 0.00 2.24
5680 6087 1.305886 GGGGGTGGAGGGATTAGTTT 58.694 55.000 0.00 0.00 0.00 2.66
5681 6088 1.644337 GGGGGTGGAGGGATTAGTTTT 59.356 52.381 0.00 0.00 0.00 2.43
5682 6089 2.854337 GGGGGTGGAGGGATTAGTTTTA 59.146 50.000 0.00 0.00 0.00 1.52
5683 6090 3.117625 GGGGGTGGAGGGATTAGTTTTAG 60.118 52.174 0.00 0.00 0.00 1.85
5684 6091 3.526430 GGGGTGGAGGGATTAGTTTTAGT 59.474 47.826 0.00 0.00 0.00 2.24
5685 6092 4.384978 GGGGTGGAGGGATTAGTTTTAGTC 60.385 50.000 0.00 0.00 0.00 2.59
5686 6093 4.226620 GGGTGGAGGGATTAGTTTTAGTCA 59.773 45.833 0.00 0.00 0.00 3.41
5687 6094 5.280830 GGGTGGAGGGATTAGTTTTAGTCAA 60.281 44.000 0.00 0.00 0.00 3.18
5688 6095 5.880887 GGTGGAGGGATTAGTTTTAGTCAAG 59.119 44.000 0.00 0.00 0.00 3.02
5689 6096 6.473758 GTGGAGGGATTAGTTTTAGTCAAGT 58.526 40.000 0.00 0.00 0.00 3.16
5690 6097 6.940867 GTGGAGGGATTAGTTTTAGTCAAGTT 59.059 38.462 0.00 0.00 0.00 2.66
5691 6098 8.098912 GTGGAGGGATTAGTTTTAGTCAAGTTA 58.901 37.037 0.00 0.00 0.00 2.24
5692 6099 8.098912 TGGAGGGATTAGTTTTAGTCAAGTTAC 58.901 37.037 0.00 0.00 0.00 2.50
5693 6100 7.277319 GGAGGGATTAGTTTTAGTCAAGTTACG 59.723 40.741 0.00 0.00 0.00 3.18
5694 6101 7.674120 AGGGATTAGTTTTAGTCAAGTTACGT 58.326 34.615 0.00 0.00 0.00 3.57
5695 6102 8.806146 AGGGATTAGTTTTAGTCAAGTTACGTA 58.194 33.333 0.00 0.00 0.00 3.57
5696 6103 9.423061 GGGATTAGTTTTAGTCAAGTTACGTAA 57.577 33.333 3.29 3.29 0.00 3.18
5698 6105 9.949377 GATTAGTTTTAGTCAAGTTACGTAAGC 57.051 33.333 8.60 4.14 45.62 3.09
5699 6106 6.443876 AGTTTTAGTCAAGTTACGTAAGCG 57.556 37.500 8.60 0.19 45.62 4.68
5714 6121 5.093751 CGTAAGCGTACGTAGTTTCTTTC 57.906 43.478 21.78 7.27 46.49 2.62
5715 6122 4.258240 CGTAAGCGTACGTAGTTTCTTTCG 60.258 45.833 21.78 14.65 46.49 3.46
5716 6123 3.273919 AGCGTACGTAGTTTCTTTCGT 57.726 42.857 17.90 0.00 37.78 3.85
5717 6124 4.404507 AGCGTACGTAGTTTCTTTCGTA 57.595 40.909 17.90 0.00 37.78 3.43
5718 6125 9.243802 CGTAAGCGTACGTAGTTTCTTTCGTAC 62.244 44.444 21.78 14.02 46.49 3.67
5722 6129 6.654519 GTACGTAGTTTCTTTCGTACGAAA 57.345 37.500 34.07 34.07 45.05 3.46
5733 6140 5.544738 TTTCGTACGAAAGAAACTACGTG 57.455 39.130 33.33 0.00 38.95 4.49
5734 6141 3.554524 TCGTACGAAAGAAACTACGTGG 58.445 45.455 17.11 0.00 39.28 4.94
5735 6142 3.249799 TCGTACGAAAGAAACTACGTGGA 59.750 43.478 17.11 0.00 39.28 4.02
5736 6143 3.974401 CGTACGAAAGAAACTACGTGGAA 59.026 43.478 10.44 0.00 39.28 3.53
5737 6144 4.440758 CGTACGAAAGAAACTACGTGGAAA 59.559 41.667 10.44 0.00 39.28 3.13
5738 6145 5.051774 CGTACGAAAGAAACTACGTGGAAAA 60.052 40.000 10.44 0.00 39.28 2.29
5739 6146 5.799681 ACGAAAGAAACTACGTGGAAAAA 57.200 34.783 5.70 0.00 37.58 1.94
5758 6165 5.668558 AAAAAGACACCTAAGCTGTTACG 57.331 39.130 0.00 0.00 0.00 3.18
5759 6166 4.332428 AAAGACACCTAAGCTGTTACGT 57.668 40.909 0.00 0.00 0.00 3.57
5760 6167 4.332428 AAGACACCTAAGCTGTTACGTT 57.668 40.909 0.00 0.00 0.00 3.99
5761 6168 5.458041 AAGACACCTAAGCTGTTACGTTA 57.542 39.130 0.00 0.00 0.00 3.18
5762 6169 5.056894 AGACACCTAAGCTGTTACGTTAG 57.943 43.478 0.00 0.00 0.00 2.34
5763 6170 4.522022 AGACACCTAAGCTGTTACGTTAGT 59.478 41.667 0.00 0.00 0.00 2.24
5764 6171 5.010415 AGACACCTAAGCTGTTACGTTAGTT 59.990 40.000 0.00 0.00 0.00 2.24
5765 6172 5.604565 ACACCTAAGCTGTTACGTTAGTTT 58.395 37.500 0.00 0.00 0.00 2.66
5766 6173 6.748132 ACACCTAAGCTGTTACGTTAGTTTA 58.252 36.000 0.00 0.00 0.00 2.01
5767 6174 6.642540 ACACCTAAGCTGTTACGTTAGTTTAC 59.357 38.462 0.00 0.00 0.00 2.01
5768 6175 5.858581 ACCTAAGCTGTTACGTTAGTTTACG 59.141 40.000 0.00 0.00 46.52 3.18
5769 6176 4.635961 AAGCTGTTACGTTAGTTTACGC 57.364 40.909 0.00 0.00 45.06 4.42
5770 6177 3.641648 AGCTGTTACGTTAGTTTACGCA 58.358 40.909 0.00 0.00 45.06 5.24
5771 6178 3.426525 AGCTGTTACGTTAGTTTACGCAC 59.573 43.478 0.00 0.00 45.06 5.34
5772 6179 3.182173 GCTGTTACGTTAGTTTACGCACA 59.818 43.478 0.00 0.00 45.06 4.57
5773 6180 4.317980 GCTGTTACGTTAGTTTACGCACAA 60.318 41.667 0.00 0.00 45.06 3.33
5774 6181 5.064562 TGTTACGTTAGTTTACGCACAAC 57.935 39.130 0.00 0.00 45.06 3.32
5775 6182 4.564372 TGTTACGTTAGTTTACGCACAACA 59.436 37.500 0.00 0.00 45.06 3.33
5776 6183 3.847037 ACGTTAGTTTACGCACAACAG 57.153 42.857 0.00 0.00 45.06 3.16
5777 6184 2.033492 ACGTTAGTTTACGCACAACAGC 60.033 45.455 0.00 0.00 45.06 4.40
5778 6185 2.220133 CGTTAGTTTACGCACAACAGCT 59.780 45.455 0.00 0.00 34.45 4.24
5779 6186 3.426191 CGTTAGTTTACGCACAACAGCTA 59.574 43.478 0.00 0.00 34.45 3.32
5780 6187 4.662394 CGTTAGTTTACGCACAACAGCTAC 60.662 45.833 0.00 0.00 34.45 3.58
5781 6188 1.790623 AGTTTACGCACAACAGCTACG 59.209 47.619 0.00 0.00 0.00 3.51
5782 6189 1.523934 GTTTACGCACAACAGCTACGT 59.476 47.619 0.00 0.00 40.53 3.57
5783 6190 2.702898 TTACGCACAACAGCTACGTA 57.297 45.000 0.00 0.00 38.12 3.57
5784 6191 2.251869 TACGCACAACAGCTACGTAG 57.748 50.000 18.47 18.47 38.12 3.51
5785 6192 0.388134 ACGCACAACAGCTACGTAGG 60.388 55.000 23.47 10.68 34.79 3.18
5786 6193 0.388134 CGCACAACAGCTACGTAGGT 60.388 55.000 21.15 21.15 33.70 3.08
5797 6204 3.438297 CTACGTAGGTGTAGCATTGCT 57.562 47.619 16.63 16.63 43.41 3.91
5798 6205 2.295253 ACGTAGGTGTAGCATTGCTC 57.705 50.000 15.81 7.72 40.44 4.26
5799 6206 1.134788 ACGTAGGTGTAGCATTGCTCC 60.135 52.381 15.81 10.58 40.44 4.70
5800 6207 1.137086 CGTAGGTGTAGCATTGCTCCT 59.863 52.381 15.81 17.36 40.44 3.69
5801 6208 2.799917 CGTAGGTGTAGCATTGCTCCTC 60.800 54.545 15.81 4.49 40.44 3.71
5802 6209 1.577736 AGGTGTAGCATTGCTCCTCT 58.422 50.000 15.81 6.20 40.44 3.69
5803 6210 1.209019 AGGTGTAGCATTGCTCCTCTG 59.791 52.381 15.81 0.00 40.44 3.35
5804 6211 1.208052 GGTGTAGCATTGCTCCTCTGA 59.792 52.381 15.81 0.00 40.44 3.27
5880 6288 9.988815 ATATATTATCAGCTTCGTTCTTCAGTT 57.011 29.630 0.00 0.00 0.00 3.16
5885 6293 1.069636 GCTTCGTTCTTCAGTTGCCTG 60.070 52.381 0.00 0.00 40.25 4.85
5933 6346 9.338291 CATTAACTTGCATATGCTATCAATCAC 57.662 33.333 27.13 0.00 42.66 3.06
6021 6435 2.546795 CCCTCCGTGCAAATCTAGCTAG 60.547 54.545 15.01 15.01 0.00 3.42
6022 6436 2.101582 CCTCCGTGCAAATCTAGCTAGT 59.898 50.000 20.10 5.41 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.740055 CACCTCGTCACAGCTGGC 60.740 66.667 19.93 6.89 0.00 4.85
38 39 1.376037 CAAAGGCCCTCACCTCGTC 60.376 63.158 0.00 0.00 39.93 4.20
41 42 2.361737 GCCAAAGGCCCTCACCTC 60.362 66.667 0.00 0.00 44.06 3.85
79 80 7.939039 TCCATTCTATAGCTACAAAAATGGAGG 59.061 37.037 24.18 10.49 43.35 4.30
80 81 8.908786 TCCATTCTATAGCTACAAAAATGGAG 57.091 34.615 24.18 10.81 43.35 3.86
82 83 9.903682 CAATCCATTCTATAGCTACAAAAATGG 57.096 33.333 21.75 21.75 41.82 3.16
86 87 9.905713 AGAACAATCCATTCTATAGCTACAAAA 57.094 29.630 0.00 0.00 34.59 2.44
87 88 9.330063 CAGAACAATCCATTCTATAGCTACAAA 57.670 33.333 0.00 0.00 34.59 2.83
88 89 7.933577 CCAGAACAATCCATTCTATAGCTACAA 59.066 37.037 0.00 0.00 34.59 2.41
89 90 7.445121 CCAGAACAATCCATTCTATAGCTACA 58.555 38.462 0.00 0.00 34.59 2.74
90 91 6.876257 CCCAGAACAATCCATTCTATAGCTAC 59.124 42.308 0.00 0.00 34.59 3.58
91 92 6.787458 TCCCAGAACAATCCATTCTATAGCTA 59.213 38.462 0.00 0.00 34.59 3.32
92 93 5.608437 TCCCAGAACAATCCATTCTATAGCT 59.392 40.000 0.00 0.00 34.59 3.32
93 94 5.869579 TCCCAGAACAATCCATTCTATAGC 58.130 41.667 0.00 0.00 34.59 2.97
94 95 9.442047 GTTATCCCAGAACAATCCATTCTATAG 57.558 37.037 0.00 0.00 34.59 1.31
95 96 8.094548 CGTTATCCCAGAACAATCCATTCTATA 58.905 37.037 0.00 0.00 34.59 1.31
96 97 6.936900 CGTTATCCCAGAACAATCCATTCTAT 59.063 38.462 0.00 0.00 34.59 1.98
109 110 5.925506 TTCATCACTACGTTATCCCAGAA 57.074 39.130 0.00 0.00 0.00 3.02
118 119 4.475944 GCAGCAAATTTCATCACTACGTT 58.524 39.130 0.00 0.00 0.00 3.99
121 122 4.439305 TGGCAGCAAATTTCATCACTAC 57.561 40.909 0.00 0.00 0.00 2.73
123 124 5.864418 ATATGGCAGCAAATTTCATCACT 57.136 34.783 0.00 0.00 0.00 3.41
141 142 9.710900 TCCATTGTAGATACACAGCTTTATATG 57.289 33.333 0.00 0.00 35.64 1.78
142 143 9.935241 CTCCATTGTAGATACACAGCTTTATAT 57.065 33.333 0.00 0.00 35.64 0.86
147 148 5.683876 ACTCCATTGTAGATACACAGCTT 57.316 39.130 0.00 0.00 35.64 3.74
149 150 5.447818 GCAAACTCCATTGTAGATACACAGC 60.448 44.000 0.00 0.00 35.64 4.40
150 151 5.877012 AGCAAACTCCATTGTAGATACACAG 59.123 40.000 0.00 0.00 35.64 3.66
151 152 5.804639 AGCAAACTCCATTGTAGATACACA 58.195 37.500 0.00 0.00 35.64 3.72
152 153 6.109359 AGAGCAAACTCCATTGTAGATACAC 58.891 40.000 0.00 0.00 44.65 2.90
153 154 6.299805 AGAGCAAACTCCATTGTAGATACA 57.700 37.500 0.00 0.00 44.65 2.29
154 155 6.457528 GCAAGAGCAAACTCCATTGTAGATAC 60.458 42.308 0.00 0.00 44.65 2.24
155 156 5.586243 GCAAGAGCAAACTCCATTGTAGATA 59.414 40.000 0.00 0.00 44.65 1.98
156 157 4.397417 GCAAGAGCAAACTCCATTGTAGAT 59.603 41.667 0.00 0.00 44.65 1.98
157 158 3.753272 GCAAGAGCAAACTCCATTGTAGA 59.247 43.478 0.00 0.00 44.65 2.59
158 159 4.088823 GCAAGAGCAAACTCCATTGTAG 57.911 45.455 0.00 0.00 44.65 2.74
185 186 0.905357 GGCAGACTCCTTTCTAGCCA 59.095 55.000 0.00 0.00 38.58 4.75
186 187 0.179234 GGGCAGACTCCTTTCTAGCC 59.821 60.000 0.00 0.00 38.27 3.93
187 188 1.199615 AGGGCAGACTCCTTTCTAGC 58.800 55.000 0.00 0.00 0.00 3.42
188 189 2.569404 ACAAGGGCAGACTCCTTTCTAG 59.431 50.000 0.00 0.00 42.25 2.43
189 190 2.621070 ACAAGGGCAGACTCCTTTCTA 58.379 47.619 0.00 0.00 42.25 2.10
191 192 3.274288 CATACAAGGGCAGACTCCTTTC 58.726 50.000 0.00 0.00 42.25 2.62
192 193 2.644798 ACATACAAGGGCAGACTCCTTT 59.355 45.455 0.00 0.00 42.25 3.11
193 194 2.269940 ACATACAAGGGCAGACTCCTT 58.730 47.619 0.00 0.00 44.76 3.36
194 195 1.958288 ACATACAAGGGCAGACTCCT 58.042 50.000 0.00 0.00 35.88 3.69
195 196 2.789409 AACATACAAGGGCAGACTCC 57.211 50.000 0.00 0.00 0.00 3.85
196 197 3.055385 TGGTAACATACAAGGGCAGACTC 60.055 47.826 0.00 0.00 46.17 3.36
197 198 2.910319 TGGTAACATACAAGGGCAGACT 59.090 45.455 0.00 0.00 46.17 3.24
198 199 3.343941 TGGTAACATACAAGGGCAGAC 57.656 47.619 0.00 0.00 46.17 3.51
212 213 4.096382 CACCAATAGCAGGTTCATGGTAAC 59.904 45.833 0.88 0.00 39.05 2.50
224 225 7.502120 AAATATAAGCTGACACCAATAGCAG 57.498 36.000 0.00 0.00 39.84 4.24
225 226 7.990314 TGTAAATATAAGCTGACACCAATAGCA 59.010 33.333 0.00 0.00 39.84 3.49
239 240 7.235430 AGAGCAAGTTCGTGTAAATATAAGC 57.765 36.000 0.00 0.00 0.00 3.09
240 241 8.869897 TCAAGAGCAAGTTCGTGTAAATATAAG 58.130 33.333 0.66 0.00 0.00 1.73
243 244 7.334421 ACATCAAGAGCAAGTTCGTGTAAATAT 59.666 33.333 0.66 0.00 0.00 1.28
247 248 4.377021 ACATCAAGAGCAAGTTCGTGTAA 58.623 39.130 0.66 0.00 0.00 2.41
271 280 3.997021 CTCACACAGAGTACCCACAAATC 59.003 47.826 0.00 0.00 39.62 2.17
273 282 2.484770 GCTCACACAGAGTACCCACAAA 60.485 50.000 0.00 0.00 46.47 2.83
275 284 0.679505 GCTCACACAGAGTACCCACA 59.320 55.000 0.00 0.00 46.47 4.17
279 288 2.289072 ACACATGCTCACACAGAGTACC 60.289 50.000 0.00 0.00 46.47 3.34
297 306 0.586802 GCCTCAACAAACTCGGACAC 59.413 55.000 0.00 0.00 0.00 3.67
316 325 4.638421 TGTTTCCTGTATTTGGGATTAGCG 59.362 41.667 0.00 0.00 0.00 4.26
319 328 8.875168 ACATTTTGTTTCCTGTATTTGGGATTA 58.125 29.630 0.00 0.00 0.00 1.75
322 331 6.739331 ACATTTTGTTTCCTGTATTTGGGA 57.261 33.333 0.00 0.00 0.00 4.37
336 345 7.822334 TCGGAGTGATCATAAGTACATTTTGTT 59.178 33.333 0.00 0.00 0.00 2.83
338 347 7.770801 TCGGAGTGATCATAAGTACATTTTG 57.229 36.000 0.00 0.00 0.00 2.44
347 356 6.927936 AGACATGAAATCGGAGTGATCATAAG 59.072 38.462 0.00 0.00 35.84 1.73
348 357 6.703165 CAGACATGAAATCGGAGTGATCATAA 59.297 38.462 0.00 0.00 35.84 1.90
361 408 4.724074 TCAATTGGGCAGACATGAAATC 57.276 40.909 5.42 0.00 0.00 2.17
362 409 4.202080 CGATCAATTGGGCAGACATGAAAT 60.202 41.667 5.42 0.00 0.00 2.17
365 412 2.093021 TCGATCAATTGGGCAGACATGA 60.093 45.455 5.42 0.00 0.00 3.07
378 425 2.743183 GCCAGCAGGTTACTCGATCAAT 60.743 50.000 0.00 0.00 37.19 2.57
382 429 1.141881 CGCCAGCAGGTTACTCGAT 59.858 57.895 0.00 0.00 37.19 3.59
384 431 2.509336 CCGCCAGCAGGTTACTCG 60.509 66.667 0.00 0.00 37.19 4.18
385 432 2.125106 CCCGCCAGCAGGTTACTC 60.125 66.667 0.00 0.00 37.19 2.59
386 433 2.928396 ACCCGCCAGCAGGTTACT 60.928 61.111 0.00 0.00 37.19 2.24
387 434 2.175035 TACACCCGCCAGCAGGTTAC 62.175 60.000 0.00 0.00 37.19 2.50
388 435 1.268992 ATACACCCGCCAGCAGGTTA 61.269 55.000 0.00 0.00 37.19 2.85
389 436 2.602676 ATACACCCGCCAGCAGGTT 61.603 57.895 0.00 0.00 37.19 3.50
390 437 3.009115 ATACACCCGCCAGCAGGT 61.009 61.111 0.00 0.00 37.19 4.00
391 438 2.514592 CATACACCCGCCAGCAGG 60.515 66.667 0.00 0.00 38.23 4.85
392 439 2.108514 CACATACACCCGCCAGCAG 61.109 63.158 0.00 0.00 0.00 4.24
393 440 2.046411 CACATACACCCGCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
394 441 3.508840 GCACATACACCCGCCAGC 61.509 66.667 0.00 0.00 0.00 4.85
395 442 3.195002 CGCACATACACCCGCCAG 61.195 66.667 0.00 0.00 0.00 4.85
399 446 3.195002 CAGGCGCACATACACCCG 61.195 66.667 10.83 0.00 0.00 5.28
400 447 3.508840 GCAGGCGCACATACACCC 61.509 66.667 10.83 0.00 38.36 4.61
401 448 2.745884 TGCAGGCGCACATACACC 60.746 61.111 10.83 0.00 45.36 4.16
410 457 0.804989 ATAACAACTCTTGCAGGCGC 59.195 50.000 0.00 0.00 39.24 6.53
411 458 3.435327 TGTAATAACAACTCTTGCAGGCG 59.565 43.478 0.00 0.00 30.91 5.52
412 459 4.695455 TCTGTAATAACAACTCTTGCAGGC 59.305 41.667 0.00 0.00 34.57 4.85
413 460 6.204688 TGTTCTGTAATAACAACTCTTGCAGG 59.795 38.462 0.00 0.00 34.57 4.85
414 461 7.189693 TGTTCTGTAATAACAACTCTTGCAG 57.810 36.000 0.00 0.00 34.04 4.41
415 462 7.744087 ATGTTCTGTAATAACAACTCTTGCA 57.256 32.000 0.00 0.00 40.05 4.08
428 475 9.601217 AGAAGCTACGAATTTATGTTCTGTAAT 57.399 29.630 0.00 0.00 0.00 1.89
429 476 8.997621 AGAAGCTACGAATTTATGTTCTGTAA 57.002 30.769 0.00 0.00 0.00 2.41
430 477 8.997621 AAGAAGCTACGAATTTATGTTCTGTA 57.002 30.769 0.00 0.00 0.00 2.74
431 478 7.907214 AAGAAGCTACGAATTTATGTTCTGT 57.093 32.000 0.00 0.00 0.00 3.41
450 497 8.116136 GGAAACAAACTGCAAACATTAAAGAAG 58.884 33.333 0.00 0.00 0.00 2.85
525 572 3.653164 ACCTTGGATTTGGTTTTGGTCT 58.347 40.909 0.00 0.00 31.62 3.85
552 599 1.066645 GGCCCAAAATTCAGAAGCTGG 60.067 52.381 0.00 0.00 31.51 4.85
568 615 1.688735 GCCTTGGATTATTCTTGGCCC 59.311 52.381 0.00 0.00 33.45 5.80
588 635 0.535102 ACCCAGACGCTCAAACCAAG 60.535 55.000 0.00 0.00 0.00 3.61
605 652 6.015772 TGACTTCCAAATTTTAGCCTACAACC 60.016 38.462 0.00 0.00 0.00 3.77
606 653 6.977213 TGACTTCCAAATTTTAGCCTACAAC 58.023 36.000 0.00 0.00 0.00 3.32
724 771 0.471022 TGGTGGAAAAGAAAGCCCCC 60.471 55.000 0.00 0.00 0.00 5.40
738 785 3.689161 TCTTCGCATAGAAACAATGGTGG 59.311 43.478 0.00 0.00 38.57 4.61
762 809 2.229062 GTGGTTCTTTCAGCTTAAGCCC 59.771 50.000 23.71 14.88 43.38 5.19
782 829 1.237458 GGGGCTGATCTAGGAGGGT 59.763 63.158 0.00 0.00 0.00 4.34
784 831 0.189574 TCAGGGGCTGATCTAGGAGG 59.810 60.000 0.00 0.00 35.39 4.30
786 833 2.021262 CATCAGGGGCTGATCTAGGA 57.979 55.000 0.00 0.00 46.83 2.94
848 1135 7.390718 GCTAAGGAGGTACAGAAGAAATTTCAA 59.609 37.037 19.99 0.00 0.00 2.69
870 1157 5.942961 AGTAGTAGCCAGTCAGATAGCTAA 58.057 41.667 0.00 0.00 39.40 3.09
939 1227 1.867233 GCCATGATTAGTAGCACCACG 59.133 52.381 0.00 0.00 0.00 4.94
1020 1308 1.134068 GGGGCAACTGTTAGGGATCTC 60.134 57.143 0.00 0.00 0.00 2.75
1071 1359 2.361610 CGCCCAGCCTCCACAAAT 60.362 61.111 0.00 0.00 0.00 2.32
1092 1380 0.108992 ATGCCTCAAACGCAATGCAG 60.109 50.000 5.91 0.42 40.22 4.41
1406 1694 7.773224 TGGATAATCCGACATACTGAACATTTT 59.227 33.333 0.00 0.00 40.17 1.82
1446 1734 4.162698 ACACTTATATTTCGGTAGCCCACA 59.837 41.667 0.00 0.00 0.00 4.17
1614 1902 4.780815 ACATAGCATCGGAGAAATCCAAA 58.219 39.130 0.00 0.00 43.58 3.28
1616 1904 4.380531 GAACATAGCATCGGAGAAATCCA 58.619 43.478 0.00 0.00 43.58 3.41
1665 1953 1.317613 AGACAATTTTGTGCGCAGGA 58.682 45.000 12.22 0.00 42.43 3.86
1688 1976 7.667219 AGATAAAATCAAACTCTCCAGAAGCAA 59.333 33.333 0.00 0.00 0.00 3.91
1845 2133 0.981183 TAACGGTCTCCACCATTGCT 59.019 50.000 0.00 0.00 44.02 3.91
1873 2161 4.670735 CGTTAACCCCAAAATAAGAGCACG 60.671 45.833 0.00 0.00 0.00 5.34
1914 2202 0.035630 ACTCCAGCAGTGAATCCAGC 60.036 55.000 0.00 0.00 32.26 4.85
2015 2303 7.380431 TCTAAGTTTCTACTAGACACAGAGC 57.620 40.000 0.00 0.00 33.17 4.09
2164 2452 1.472552 GGCAACAAAACCTTGTCCACC 60.473 52.381 0.00 0.00 45.25 4.61
2242 2530 5.008217 CAGAAACAAATACAAAGTCGGGACA 59.992 40.000 1.17 0.00 0.00 4.02
2339 2627 8.785329 TTTGTGAACATCTGCATAAGTATACA 57.215 30.769 5.50 0.00 0.00 2.29
2475 2763 4.778213 ACCAATGCAGGTGTGATATACT 57.222 40.909 0.00 0.00 41.30 2.12
2506 2794 7.171508 GTGATGGCGAACTGATCTGATAATAAA 59.828 37.037 6.60 0.00 0.00 1.40
2594 2882 6.161855 TGGTGTAGCATTCTATGTAAGAGG 57.838 41.667 0.00 0.00 35.05 3.69
2610 2898 6.500684 ACTTAATTGCATCACTTGGTGTAG 57.499 37.500 0.00 0.00 34.79 2.74
3119 3407 3.767673 TCAGTGGTCTGGTCACCTTATAC 59.232 47.826 0.00 0.00 41.59 1.47
3165 3453 6.595716 GGTGACAGTTGAAGCAATCTATTACT 59.404 38.462 0.00 0.00 0.00 2.24
3284 3572 7.833285 AGATACTTTTGCTTGGTAGGAAAAA 57.167 32.000 6.15 0.00 46.60 1.94
3305 3593 8.164070 ACCATTTTACAAAGACTACAGGAAGAT 58.836 33.333 0.00 0.00 0.00 2.40
3338 3626 5.443185 TTGTAGGATTCGATTACTACCGG 57.557 43.478 21.40 0.00 35.98 5.28
3340 3628 7.924412 TGACAATTGTAGGATTCGATTACTACC 59.076 37.037 21.40 9.60 35.98 3.18
3350 3638 9.003658 CCTAACCATATGACAATTGTAGGATTC 57.996 37.037 11.95 0.00 0.00 2.52
3368 3711 5.755849 CTTTCACCTTCCATACCTAACCAT 58.244 41.667 0.00 0.00 0.00 3.55
3374 3718 3.185455 AGAGCTTTCACCTTCCATACCT 58.815 45.455 0.00 0.00 0.00 3.08
3383 3727 8.157476 TGAAGTAATAAAAGAGAGCTTTCACCT 58.843 33.333 7.06 0.00 43.32 4.00
3451 3795 7.398829 TCCTTAACTTTAATACATGCACCAGA 58.601 34.615 0.00 0.00 0.00 3.86
3484 3828 6.597672 TGCAGTTCCGTACAGATTTATTCAAT 59.402 34.615 0.00 0.00 0.00 2.57
3525 3869 2.257691 TGCATGCCATTTTGCAACTT 57.742 40.000 16.68 0.00 45.30 2.66
3532 3876 5.354792 GGACAAATGTTATGCATGCCATTTT 59.645 36.000 24.38 18.55 35.84 1.82
3572 3916 7.032377 AGAAAAACTTGCTAAACTTCTCAGG 57.968 36.000 0.00 0.00 0.00 3.86
4221 4565 5.050023 TGAGCGTCTATGTAGAAATCTCTCG 60.050 44.000 11.93 0.00 33.47 4.04
4478 4822 1.703411 TTGAAACCAGAGCCTTTGGG 58.297 50.000 6.21 0.00 40.11 4.12
4520 4864 5.750352 AATGTTTCCCAAGCATTCTCAAT 57.250 34.783 0.00 0.00 0.00 2.57
4544 4888 9.533253 CCATGCAAGGGAAAATTATACTAAAAG 57.467 33.333 0.00 0.00 43.46 2.27
4601 4945 0.675633 CAGCAAAACAAGTCCCCTGG 59.324 55.000 0.00 0.00 0.00 4.45
4714 5058 4.803088 TGCTCAAATCAAACAAAAGAACCG 59.197 37.500 0.00 0.00 0.00 4.44
4759 5104 3.825308 CACATAAGCTGCACGAAAACAT 58.175 40.909 1.02 0.00 0.00 2.71
4820 5165 3.341823 CTGAAGAACCCAAGACCTCATG 58.658 50.000 0.00 0.00 0.00 3.07
4954 5305 0.706729 CGCTCGTCCTCGTTAACAAC 59.293 55.000 6.39 0.00 38.33 3.32
4986 5337 0.251922 ATGATGCAAACTGCCCTGGT 60.252 50.000 0.00 0.00 44.23 4.00
5001 5352 1.228063 GCCTGTGATCGGCCATGAT 60.228 57.895 2.24 0.00 41.73 2.45
5138 5489 2.492484 ACATCTTACACGAGACCTGTCC 59.508 50.000 0.00 0.00 0.00 4.02
5185 5539 4.757149 GTCCTTCTTTGTAACATCTGCTGT 59.243 41.667 0.00 0.00 40.84 4.40
5188 5542 5.008613 TGTTGTCCTTCTTTGTAACATCTGC 59.991 40.000 0.00 0.00 0.00 4.26
5247 5601 5.294306 CAGTTTGTGTAACTCAAGCAAGAGA 59.706 40.000 11.79 0.00 45.29 3.10
5316 5676 7.092079 TGTGTGGAATCATTTATTCAAGCTTG 58.908 34.615 20.81 20.81 45.05 4.01
5379 5741 3.897239 ACATTTCAGACAACAACCAGGA 58.103 40.909 0.00 0.00 0.00 3.86
5383 5745 6.324819 CCATCATACATTTCAGACAACAACC 58.675 40.000 0.00 0.00 0.00 3.77
5401 5778 5.526111 GCAAATCAAAGCTTTATGCCATCAT 59.474 36.000 12.25 0.00 44.23 2.45
5402 5779 4.871557 GCAAATCAAAGCTTTATGCCATCA 59.128 37.500 12.25 0.00 44.23 3.07
5403 5780 5.114081 AGCAAATCAAAGCTTTATGCCATC 58.886 37.500 23.52 9.31 44.23 3.51
5405 5782 4.540359 AGCAAATCAAAGCTTTATGCCA 57.460 36.364 23.52 5.89 44.23 4.92
5427 5804 2.695666 GAGGTACTGAGATGCTAGGCAA 59.304 50.000 0.00 0.00 40.61 4.52
5436 5813 7.635648 ACAGTACTCTAAAGAGGTACTGAGAT 58.364 38.462 30.61 18.95 45.93 2.75
5445 5823 7.546316 GGCTTTTAAGACAGTACTCTAAAGAGG 59.454 40.741 11.53 0.00 39.12 3.69
5453 5831 6.613755 TTTGTGGCTTTTAAGACAGTACTC 57.386 37.500 0.00 0.00 46.65 2.59
5455 5833 7.918562 TGAAATTTGTGGCTTTTAAGACAGTAC 59.081 33.333 0.00 0.00 46.65 2.73
5457 5835 6.756542 GTGAAATTTGTGGCTTTTAAGACAGT 59.243 34.615 0.00 0.00 46.65 3.55
5458 5836 6.200854 GGTGAAATTTGTGGCTTTTAAGACAG 59.799 38.462 0.00 0.00 46.65 3.51
5460 5838 5.174943 CGGTGAAATTTGTGGCTTTTAAGAC 59.825 40.000 0.00 0.00 33.51 3.01
5502 5880 9.453325 CGTAGTCTTTTCTTAGAAGGATCATAC 57.547 37.037 0.00 3.62 0.00 2.39
5506 5913 7.098074 TCCGTAGTCTTTTCTTAGAAGGATC 57.902 40.000 0.00 0.00 0.00 3.36
5516 5923 4.705507 TGCTGTCTATCCGTAGTCTTTTCT 59.294 41.667 0.00 0.00 0.00 2.52
5526 5933 0.528466 CGTGCATGCTGTCTATCCGT 60.528 55.000 20.33 0.00 0.00 4.69
5532 5939 0.462581 CCCATACGTGCATGCTGTCT 60.463 55.000 20.33 7.44 0.00 3.41
5542 5949 1.867233 GTAGCATTGCTCCCATACGTG 59.133 52.381 15.81 0.00 40.44 4.49
5544 5951 1.867233 GTGTAGCATTGCTCCCATACG 59.133 52.381 15.81 0.00 40.44 3.06
5551 5958 2.295253 ACGTAGGTGTAGCATTGCTC 57.705 50.000 15.81 7.72 40.44 4.26
5563 5970 0.388134 CGCACAACAGCTACGTAGGT 60.388 55.000 21.15 21.15 33.70 3.08
5564 5971 0.388134 ACGCACAACAGCTACGTAGG 60.388 55.000 23.47 10.68 34.79 3.18
5565 5972 2.251869 TACGCACAACAGCTACGTAG 57.748 50.000 18.47 18.47 38.12 3.51
5566 5973 2.702898 TTACGCACAACAGCTACGTA 57.297 45.000 0.00 0.00 38.12 3.57
5567 5974 1.523934 GTTTACGCACAACAGCTACGT 59.476 47.619 0.00 0.00 40.53 3.57
5568 5975 1.790623 AGTTTACGCACAACAGCTACG 59.209 47.619 0.00 0.00 0.00 3.51
5569 5976 4.662394 CGTTAGTTTACGCACAACAGCTAC 60.662 45.833 0.00 0.00 34.45 3.58
5570 5977 3.426191 CGTTAGTTTACGCACAACAGCTA 59.574 43.478 0.00 0.00 34.45 3.32
5571 5978 2.220133 CGTTAGTTTACGCACAACAGCT 59.780 45.455 0.00 0.00 34.45 4.24
5572 5979 2.033492 ACGTTAGTTTACGCACAACAGC 60.033 45.455 0.00 0.00 45.06 4.40
5573 5980 3.847037 ACGTTAGTTTACGCACAACAG 57.153 42.857 0.00 0.00 45.06 3.16
5574 5981 4.564372 TGTTACGTTAGTTTACGCACAACA 59.436 37.500 0.00 0.00 45.06 3.33
5575 5982 5.064562 TGTTACGTTAGTTTACGCACAAC 57.935 39.130 0.00 0.00 45.06 3.32
5576 5983 4.317980 GCTGTTACGTTAGTTTACGCACAA 60.318 41.667 0.00 0.00 45.06 3.33
5577 5984 3.182173 GCTGTTACGTTAGTTTACGCACA 59.818 43.478 0.00 0.00 45.06 4.57
5578 5985 3.426525 AGCTGTTACGTTAGTTTACGCAC 59.573 43.478 0.00 0.00 45.06 5.34
5579 5986 3.641648 AGCTGTTACGTTAGTTTACGCA 58.358 40.909 0.00 0.00 45.06 5.24
5580 5987 4.635961 AAGCTGTTACGTTAGTTTACGC 57.364 40.909 0.00 0.00 45.06 4.42
5581 5988 5.858581 ACCTAAGCTGTTACGTTAGTTTACG 59.141 40.000 0.00 0.00 46.52 3.18
5582 5989 6.642540 ACACCTAAGCTGTTACGTTAGTTTAC 59.357 38.462 0.00 0.00 0.00 2.01
5583 5990 6.748132 ACACCTAAGCTGTTACGTTAGTTTA 58.252 36.000 0.00 0.00 0.00 2.01
5584 5991 5.604565 ACACCTAAGCTGTTACGTTAGTTT 58.395 37.500 0.00 0.00 0.00 2.66
5585 5992 5.010415 AGACACCTAAGCTGTTACGTTAGTT 59.990 40.000 0.00 0.00 0.00 2.24
5586 5993 4.522022 AGACACCTAAGCTGTTACGTTAGT 59.478 41.667 0.00 0.00 0.00 2.24
5587 5994 5.056894 AGACACCTAAGCTGTTACGTTAG 57.943 43.478 0.00 0.00 0.00 2.34
5588 5995 5.458041 AAGACACCTAAGCTGTTACGTTA 57.542 39.130 0.00 0.00 0.00 3.18
5589 5996 4.332428 AAGACACCTAAGCTGTTACGTT 57.668 40.909 0.00 0.00 0.00 3.99
5590 5997 4.332428 AAAGACACCTAAGCTGTTACGT 57.668 40.909 0.00 0.00 0.00 3.57
5591 5998 5.668558 AAAAAGACACCTAAGCTGTTACG 57.331 39.130 0.00 0.00 0.00 3.18
5610 6017 5.083821 CCCTAATTCCCTCCAACAGAAAAA 58.916 41.667 0.00 0.00 0.00 1.94
5611 6018 4.510205 CCCCTAATTCCCTCCAACAGAAAA 60.510 45.833 0.00 0.00 0.00 2.29
5612 6019 3.011257 CCCCTAATTCCCTCCAACAGAAA 59.989 47.826 0.00 0.00 0.00 2.52
5613 6020 2.580783 CCCCTAATTCCCTCCAACAGAA 59.419 50.000 0.00 0.00 0.00 3.02
5614 6021 2.205342 CCCCTAATTCCCTCCAACAGA 58.795 52.381 0.00 0.00 0.00 3.41
5615 6022 1.215423 CCCCCTAATTCCCTCCAACAG 59.785 57.143 0.00 0.00 0.00 3.16
5616 6023 1.203635 TCCCCCTAATTCCCTCCAACA 60.204 52.381 0.00 0.00 0.00 3.33
5617 6024 1.495148 CTCCCCCTAATTCCCTCCAAC 59.505 57.143 0.00 0.00 0.00 3.77
5618 6025 1.630894 CCTCCCCCTAATTCCCTCCAA 60.631 57.143 0.00 0.00 0.00 3.53
5619 6026 0.029059 CCTCCCCCTAATTCCCTCCA 60.029 60.000 0.00 0.00 0.00 3.86
5620 6027 0.772517 CCCTCCCCCTAATTCCCTCC 60.773 65.000 0.00 0.00 0.00 4.30
5621 6028 0.271005 TCCCTCCCCCTAATTCCCTC 59.729 60.000 0.00 0.00 0.00 4.30
5622 6029 0.028955 GTCCCTCCCCCTAATTCCCT 60.029 60.000 0.00 0.00 0.00 4.20
5623 6030 1.066585 GGTCCCTCCCCCTAATTCCC 61.067 65.000 0.00 0.00 0.00 3.97
5624 6031 2.553207 GGTCCCTCCCCCTAATTCC 58.447 63.158 0.00 0.00 0.00 3.01
5638 6045 3.089284 CTGATTTTAACTGGGTGGGTCC 58.911 50.000 0.00 0.00 0.00 4.46
5639 6046 3.089284 CCTGATTTTAACTGGGTGGGTC 58.911 50.000 0.00 0.00 0.00 4.46
5640 6047 2.225267 CCCTGATTTTAACTGGGTGGGT 60.225 50.000 0.00 0.00 40.22 4.51
5641 6048 2.456577 CCCTGATTTTAACTGGGTGGG 58.543 52.381 0.00 0.00 40.22 4.61
5642 6049 2.456577 CCCCTGATTTTAACTGGGTGG 58.543 52.381 0.00 0.00 42.45 4.61
5643 6050 2.456577 CCCCCTGATTTTAACTGGGTG 58.543 52.381 0.00 0.00 42.45 4.61
5644 6051 2.919772 CCCCCTGATTTTAACTGGGT 57.080 50.000 0.00 0.00 42.45 4.51
5661 6068 1.305886 AAACTAATCCCTCCACCCCC 58.694 55.000 0.00 0.00 0.00 5.40
5662 6069 3.526430 ACTAAAACTAATCCCTCCACCCC 59.474 47.826 0.00 0.00 0.00 4.95
5663 6070 4.226620 TGACTAAAACTAATCCCTCCACCC 59.773 45.833 0.00 0.00 0.00 4.61
5664 6071 5.431179 TGACTAAAACTAATCCCTCCACC 57.569 43.478 0.00 0.00 0.00 4.61
5665 6072 6.473758 ACTTGACTAAAACTAATCCCTCCAC 58.526 40.000 0.00 0.00 0.00 4.02
5666 6073 6.697641 ACTTGACTAAAACTAATCCCTCCA 57.302 37.500 0.00 0.00 0.00 3.86
5667 6074 7.277319 CGTAACTTGACTAAAACTAATCCCTCC 59.723 40.741 0.00 0.00 0.00 4.30
5668 6075 7.816513 ACGTAACTTGACTAAAACTAATCCCTC 59.183 37.037 0.00 0.00 0.00 4.30
5669 6076 7.674120 ACGTAACTTGACTAAAACTAATCCCT 58.326 34.615 0.00 0.00 0.00 4.20
5670 6077 7.895975 ACGTAACTTGACTAAAACTAATCCC 57.104 36.000 0.00 0.00 0.00 3.85
5672 6079 9.949377 GCTTACGTAACTTGACTAAAACTAATC 57.051 33.333 3.29 0.00 0.00 1.75
5673 6080 8.642020 CGCTTACGTAACTTGACTAAAACTAAT 58.358 33.333 3.29 0.00 33.53 1.73
5674 6081 7.996002 CGCTTACGTAACTTGACTAAAACTAA 58.004 34.615 3.29 0.00 33.53 2.24
5675 6082 7.552848 CGCTTACGTAACTTGACTAAAACTA 57.447 36.000 3.29 0.00 33.53 2.24
5676 6083 6.443876 CGCTTACGTAACTTGACTAAAACT 57.556 37.500 3.29 0.00 33.53 2.66
5693 6100 4.613031 ACGAAAGAAACTACGTACGCTTAC 59.387 41.667 16.72 2.51 37.22 2.34
5694 6101 4.783242 ACGAAAGAAACTACGTACGCTTA 58.217 39.130 16.72 0.00 37.22 3.09
5695 6102 3.632189 ACGAAAGAAACTACGTACGCTT 58.368 40.909 16.72 6.46 37.22 4.68
5696 6103 3.273919 ACGAAAGAAACTACGTACGCT 57.726 42.857 16.72 5.36 37.22 5.07
5697 6104 4.455571 GTACGAAAGAAACTACGTACGC 57.544 45.455 16.72 0.00 46.45 4.42
5711 6118 4.440758 CCACGTAGTTTCTTTCGTACGAAA 59.559 41.667 34.07 34.07 41.61 3.46
5712 6119 3.974401 CCACGTAGTTTCTTTCGTACGAA 59.026 43.478 26.00 26.00 41.61 3.85
5713 6120 3.249799 TCCACGTAGTTTCTTTCGTACGA 59.750 43.478 15.28 15.28 41.61 3.43
5714 6121 3.554524 TCCACGTAGTTTCTTTCGTACG 58.445 45.455 9.53 9.53 41.61 3.67
5715 6122 5.888412 TTTCCACGTAGTTTCTTTCGTAC 57.112 39.130 0.00 0.00 41.61 3.67
5716 6123 6.900568 TTTTTCCACGTAGTTTCTTTCGTA 57.099 33.333 0.00 0.00 41.61 3.43
5717 6124 5.799681 TTTTTCCACGTAGTTTCTTTCGT 57.200 34.783 0.00 0.00 41.61 3.85
5736 6143 5.121105 ACGTAACAGCTTAGGTGTCTTTTT 58.879 37.500 17.63 4.31 43.73 1.94
5737 6144 4.700700 ACGTAACAGCTTAGGTGTCTTTT 58.299 39.130 17.63 4.69 43.73 2.27
5738 6145 4.332428 ACGTAACAGCTTAGGTGTCTTT 57.668 40.909 17.63 5.05 43.73 2.52
5739 6146 4.332428 AACGTAACAGCTTAGGTGTCTT 57.668 40.909 17.63 5.78 43.73 3.01
5740 6147 4.522022 ACTAACGTAACAGCTTAGGTGTCT 59.478 41.667 17.63 10.28 43.73 3.41
5741 6148 4.802999 ACTAACGTAACAGCTTAGGTGTC 58.197 43.478 17.63 5.42 43.73 3.67
5742 6149 4.861102 ACTAACGTAACAGCTTAGGTGT 57.139 40.909 11.59 11.59 46.58 4.16
5743 6150 6.183359 CGTAAACTAACGTAACAGCTTAGGTG 60.183 42.308 10.09 10.09 38.07 4.00
5744 6151 5.858581 CGTAAACTAACGTAACAGCTTAGGT 59.141 40.000 0.00 0.00 38.07 3.08
5745 6152 5.220098 GCGTAAACTAACGTAACAGCTTAGG 60.220 44.000 0.00 0.00 44.64 2.69
5746 6153 5.343058 TGCGTAAACTAACGTAACAGCTTAG 59.657 40.000 0.00 0.00 44.64 2.18
5747 6154 5.116983 GTGCGTAAACTAACGTAACAGCTTA 59.883 40.000 0.00 0.00 44.64 3.09
5748 6155 4.050553 TGCGTAAACTAACGTAACAGCTT 58.949 39.130 0.00 0.00 44.64 3.74
5749 6156 3.426525 GTGCGTAAACTAACGTAACAGCT 59.573 43.478 0.00 0.00 44.64 4.24
5750 6157 3.182173 TGTGCGTAAACTAACGTAACAGC 59.818 43.478 0.00 0.00 44.64 4.40
5751 6158 4.952445 TGTGCGTAAACTAACGTAACAG 57.048 40.909 0.00 0.00 44.64 3.16
5752 6159 4.564372 TGTTGTGCGTAAACTAACGTAACA 59.436 37.500 0.00 9.90 44.64 2.41
5753 6160 5.064562 TGTTGTGCGTAAACTAACGTAAC 57.935 39.130 0.00 3.24 44.64 2.50
5754 6161 4.317980 GCTGTTGTGCGTAAACTAACGTAA 60.318 41.667 0.00 0.00 44.64 3.18
5755 6162 3.182173 GCTGTTGTGCGTAAACTAACGTA 59.818 43.478 0.00 0.00 44.64 3.57
5756 6163 2.033492 GCTGTTGTGCGTAAACTAACGT 60.033 45.455 0.00 0.00 44.64 3.99
5757 6164 2.220133 AGCTGTTGTGCGTAAACTAACG 59.780 45.455 0.00 0.00 45.58 3.18
5758 6165 3.872560 AGCTGTTGTGCGTAAACTAAC 57.127 42.857 0.00 0.00 38.13 2.34
5759 6166 3.426191 CGTAGCTGTTGTGCGTAAACTAA 59.574 43.478 0.00 0.00 38.13 2.24
5760 6167 2.981805 CGTAGCTGTTGTGCGTAAACTA 59.018 45.455 0.00 0.00 38.13 2.24
5761 6168 1.790623 CGTAGCTGTTGTGCGTAAACT 59.209 47.619 0.00 0.00 38.13 2.66
5762 6169 1.523934 ACGTAGCTGTTGTGCGTAAAC 59.476 47.619 0.00 0.00 38.13 2.01
5763 6170 1.855513 ACGTAGCTGTTGTGCGTAAA 58.144 45.000 0.00 0.00 38.13 2.01
5764 6171 2.587956 CTACGTAGCTGTTGTGCGTAA 58.412 47.619 10.14 0.00 37.54 3.18
5765 6172 1.135603 CCTACGTAGCTGTTGTGCGTA 60.136 52.381 17.41 0.00 37.05 4.42
5766 6173 0.388134 CCTACGTAGCTGTTGTGCGT 60.388 55.000 17.41 0.00 39.23 5.24
5767 6174 0.388134 ACCTACGTAGCTGTTGTGCG 60.388 55.000 17.41 2.78 38.13 5.34
5768 6175 1.068474 CACCTACGTAGCTGTTGTGC 58.932 55.000 17.41 0.00 0.00 4.57
5769 6176 2.433868 ACACCTACGTAGCTGTTGTG 57.566 50.000 17.41 19.29 32.71 3.33
5770 6177 3.844577 CTACACCTACGTAGCTGTTGT 57.155 47.619 24.48 20.01 32.97 3.32
5777 6184 3.372954 GAGCAATGCTACACCTACGTAG 58.627 50.000 15.92 15.92 39.88 3.51
5778 6185 2.100252 GGAGCAATGCTACACCTACGTA 59.900 50.000 13.46 0.00 39.71 3.57
5779 6186 1.134788 GGAGCAATGCTACACCTACGT 60.135 52.381 13.46 0.00 39.71 3.57
5780 6187 1.137086 AGGAGCAATGCTACACCTACG 59.863 52.381 20.85 0.00 42.99 3.51
5781 6188 2.432510 AGAGGAGCAATGCTACACCTAC 59.567 50.000 20.85 10.55 42.99 3.18
5782 6189 2.432146 CAGAGGAGCAATGCTACACCTA 59.568 50.000 20.85 0.00 42.99 3.08
5783 6190 1.209019 CAGAGGAGCAATGCTACACCT 59.791 52.381 20.85 16.65 42.99 4.00
5784 6191 1.208052 TCAGAGGAGCAATGCTACACC 59.792 52.381 20.85 11.77 42.99 4.16
5785 6192 2.680312 TCAGAGGAGCAATGCTACAC 57.320 50.000 20.85 13.88 42.99 2.90
5786 6193 3.701205 TTTCAGAGGAGCAATGCTACA 57.299 42.857 20.85 0.00 42.99 2.74
5860 6268 3.679980 GCAACTGAAGAACGAAGCTGATA 59.320 43.478 0.00 0.00 0.00 2.15
5864 6272 1.230324 GGCAACTGAAGAACGAAGCT 58.770 50.000 0.00 0.00 0.00 3.74
5880 6288 6.687901 GCGATCAAATATATATACCCCAGGCA 60.688 42.308 0.00 0.00 0.00 4.75
5885 6293 5.294356 TGCGCGATCAAATATATATACCCC 58.706 41.667 12.10 0.00 0.00 4.95
5933 6346 8.602328 TGTAAATCTTTTGCAAATGTTTCAGTG 58.398 29.630 20.69 0.00 0.00 3.66
6021 6435 5.522824 CCGAAAAGGGAAGTGTATTAGCTAC 59.477 44.000 0.00 0.00 35.97 3.58
6022 6436 5.667466 CCGAAAAGGGAAGTGTATTAGCTA 58.333 41.667 0.00 0.00 35.97 3.32
6076 6490 1.072159 GCAGGTCCTTGTCACAGCT 59.928 57.895 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.