Multiple sequence alignment - TraesCS3B01G525200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G525200 chr3B 100.000 5339 0 0 1 5339 766836927 766831589 0.000000e+00 9860.0
1 TraesCS3B01G525200 chr3B 93.872 1746 71 12 3365 5100 768512276 768513995 0.000000e+00 2599.0
2 TraesCS3B01G525200 chr3B 88.742 1288 56 54 821 2073 768510431 768511664 0.000000e+00 1493.0
3 TraesCS3B01G525200 chr3B 94.687 527 13 7 2086 2597 768511758 768512284 0.000000e+00 804.0
4 TraesCS3B01G525200 chr3B 80.630 857 94 44 1058 1886 766792430 766791618 9.900000e-167 597.0
5 TraesCS3B01G525200 chr3B 81.010 832 75 51 3783 4554 768611840 768612648 7.710000e-163 584.0
6 TraesCS3B01G525200 chr3B 93.634 377 23 1 2988 3364 789764552 789764927 3.610000e-156 562.0
7 TraesCS3B01G525200 chr3B 93.369 377 24 1 2988 3364 789763170 789763545 1.680000e-154 556.0
8 TraesCS3B01G525200 chr3B 91.777 377 30 1 2988 3364 789765847 789766222 1.700000e-144 523.0
9 TraesCS3B01G525200 chr3B 83.837 563 53 17 1541 2073 768261919 768262473 7.980000e-138 501.0
10 TraesCS3B01G525200 chr3B 88.636 352 36 4 2162 2512 768263111 768263459 4.940000e-115 425.0
11 TraesCS3B01G525200 chr3B 86.719 384 38 7 2084 2454 768262589 768262972 1.070000e-111 414.0
12 TraesCS3B01G525200 chr3B 87.906 339 30 11 3513 3845 766791346 766791013 6.480000e-104 388.0
13 TraesCS3B01G525200 chr3B 80.989 526 67 20 2091 2594 768671352 768671866 2.330000e-103 387.0
14 TraesCS3B01G525200 chr3B 82.667 450 49 19 879 1322 768261186 768261612 6.530000e-99 372.0
15 TraesCS3B01G525200 chr3B 96.618 207 7 0 2593 2799 762798895 762798689 1.420000e-90 344.0
16 TraesCS3B01G525200 chr3B 96.117 206 8 0 2594 2799 762800061 762799856 2.380000e-88 337.0
17 TraesCS3B01G525200 chr3B 79.337 513 61 23 2091 2587 768725059 768725542 8.630000e-83 318.0
18 TraesCS3B01G525200 chr3B 94.245 139 6 2 5200 5336 768527109 768527247 1.510000e-50 211.0
19 TraesCS3B01G525200 chr3B 80.392 255 31 12 3365 3608 768671862 768672108 5.500000e-40 176.0
20 TraesCS3B01G525200 chr3B 94.737 76 3 1 637 712 768510187 768510261 3.380000e-22 117.0
21 TraesCS3B01G525200 chr3B 88.608 79 9 0 4349 4427 766790446 766790368 4.400000e-16 97.1
22 TraesCS3B01G525200 chr3B 91.304 46 2 2 3528 3573 637663680 637663723 1.610000e-05 62.1
23 TraesCS3B01G525200 chr3B 91.304 46 2 2 3528 3573 637679566 637679609 1.610000e-05 62.1
24 TraesCS3B01G525200 chr3A 91.171 1982 128 33 3365 5336 712308051 712309995 0.000000e+00 2647.0
25 TraesCS3B01G525200 chr3A 91.319 887 37 13 1731 2597 712307193 712308059 0.000000e+00 1175.0
26 TraesCS3B01G525200 chr3A 89.246 623 47 13 3572 4181 711302672 711302057 0.000000e+00 761.0
27 TraesCS3B01G525200 chr3A 82.422 768 63 38 3433 4134 711381654 711380893 5.910000e-169 604.0
28 TraesCS3B01G525200 chr3A 83.105 657 69 27 3921 4554 712354723 712355360 1.300000e-155 560.0
29 TraesCS3B01G525200 chr3A 81.908 608 45 26 1515 2073 711385167 711384576 2.270000e-123 453.0
30 TraesCS3B01G525200 chr3A 85.000 460 51 15 955 1410 711337264 711336819 8.150000e-123 451.0
31 TraesCS3B01G525200 chr3A 86.232 414 42 6 2084 2484 711384460 711384049 8.210000e-118 435.0
32 TraesCS3B01G525200 chr3A 86.375 389 37 12 1058 1437 711385706 711385325 1.380000e-110 411.0
33 TraesCS3B01G525200 chr3A 81.105 561 60 27 1433 1976 712343534 712344065 1.790000e-109 407.0
34 TraesCS3B01G525200 chr3A 83.990 406 32 9 1591 1976 712322856 712323248 5.080000e-95 359.0
35 TraesCS3B01G525200 chr3A 80.000 510 63 23 3365 3846 712381087 712381585 1.840000e-89 340.0
36 TraesCS3B01G525200 chr3A 94.000 200 12 0 1118 1317 712341691 712341890 2.420000e-78 303.0
37 TraesCS3B01G525200 chr3A 77.306 542 60 27 2091 2597 712454209 712454722 1.470000e-65 261.0
38 TraesCS3B01G525200 chr3A 82.724 301 39 9 1591 1890 712379803 712380091 6.860000e-64 255.0
39 TraesCS3B01G525200 chr3A 82.007 289 31 11 1037 1323 712379101 712379370 5.380000e-55 226.0
40 TraesCS3B01G525200 chr3A 90.000 160 6 5 779 932 712307022 712307177 1.170000e-46 198.0
41 TraesCS3B01G525200 chr3A 83.893 149 15 7 4288 4435 711301931 711301791 3.350000e-27 134.0
42 TraesCS3B01G525200 chr3A 88.732 71 3 5 2003 2073 712454016 712454081 1.230000e-11 82.4
43 TraesCS3B01G525200 chr3D 90.863 1992 124 26 3366 5334 577154026 577152070 0.000000e+00 2617.0
44 TraesCS3B01G525200 chr3D 87.881 1345 70 37 779 2073 577156981 577155680 0.000000e+00 1495.0
45 TraesCS3B01G525200 chr3D 89.349 676 53 14 3513 4178 575765494 575764828 0.000000e+00 832.0
46 TraesCS3B01G525200 chr3D 87.651 664 57 15 3671 4316 576890032 576889376 0.000000e+00 749.0
47 TraesCS3B01G525200 chr3D 79.826 1036 119 60 872 1886 577145775 577144809 0.000000e+00 673.0
48 TraesCS3B01G525200 chr3D 90.249 523 34 11 2084 2597 577154533 577154019 0.000000e+00 667.0
49 TraesCS3B01G525200 chr3D 80.382 943 114 45 966 1884 575766662 575765767 0.000000e+00 651.0
50 TraesCS3B01G525200 chr3D 77.624 1153 136 73 853 1976 576901701 576900642 5.960000e-164 588.0
51 TraesCS3B01G525200 chr3D 85.872 545 33 16 1 513 576810827 576811359 1.690000e-149 540.0
52 TraesCS3B01G525200 chr3D 85.328 518 57 12 3643 4147 576853732 576853221 7.930000e-143 518.0
53 TraesCS3B01G525200 chr3D 81.615 582 63 26 877 1437 575840596 575840038 4.910000e-120 442.0
54 TraesCS3B01G525200 chr3D 90.964 332 21 6 3849 4178 577144208 577143884 6.350000e-119 438.0
55 TraesCS3B01G525200 chr3D 80.189 530 34 25 1591 2073 577025195 577024690 1.110000e-86 331.0
56 TraesCS3B01G525200 chr3D 94.975 199 9 1 1886 2084 577154801 577154604 1.440000e-80 311.0
57 TraesCS3B01G525200 chr3D 81.188 404 56 11 2091 2479 577178421 577178819 1.870000e-79 307.0
58 TraesCS3B01G525200 chr3D 85.106 282 37 5 2161 2441 575837748 575837471 3.150000e-72 283.0
59 TraesCS3B01G525200 chr3D 93.233 133 5 3 5206 5336 142487640 142487770 5.460000e-45 193.0
60 TraesCS3B01G525200 chr3D 92.233 103 4 3 3366 3468 577154901 577154803 5.570000e-30 143.0
61 TraesCS3B01G525200 chr3D 80.476 210 19 8 3435 3630 575837316 575837115 2.000000e-29 141.0
62 TraesCS3B01G525200 chr3D 87.402 127 11 5 2474 2597 576900284 576900160 2.000000e-29 141.0
63 TraesCS3B01G525200 chr3D 82.927 164 15 8 4288 4439 575764730 575764568 9.330000e-28 135.0
64 TraesCS3B01G525200 chr3D 87.273 110 10 1 4333 4438 577143716 577143607 7.260000e-24 122.0
65 TraesCS3B01G525200 chr3D 95.745 47 0 1 4185 4231 575764781 575764737 2.060000e-09 75.0
66 TraesCS3B01G525200 chr3D 87.500 64 6 1 4185 4248 583031873 583031934 7.420000e-09 73.1
67 TraesCS3B01G525200 chr6B 93.369 377 24 1 2988 3364 41296688 41297063 1.680000e-154 556.0
68 TraesCS3B01G525200 chr6B 92.573 377 27 1 2988 3364 41267812 41268187 1.690000e-149 540.0
69 TraesCS3B01G525200 chr6B 92.308 377 28 1 2988 3364 41393521 41393146 7.870000e-148 534.0
70 TraesCS3B01G525200 chr6B 92.676 355 25 1 2988 3342 41279421 41279774 1.330000e-140 510.0
71 TraesCS3B01G525200 chr6B 92.394 355 26 1 2988 3342 41281257 41281610 6.170000e-139 505.0
72 TraesCS3B01G525200 chr6B 92.113 355 27 1 2988 3342 41277626 41277979 2.870000e-137 499.0
73 TraesCS3B01G525200 chr7D 84.422 398 44 12 2595 2978 625909920 625910313 5.050000e-100 375.0
74 TraesCS3B01G525200 chr7D 90.909 209 18 1 2770 2978 277899182 277898975 4.070000e-71 279.0
75 TraesCS3B01G525200 chr7D 90.909 209 18 1 2770 2978 277900613 277900406 4.070000e-71 279.0
76 TraesCS3B01G525200 chr1B 98.551 207 3 0 2593 2799 266951376 266951170 3.040000e-97 366.0
77 TraesCS3B01G525200 chr1B 97.087 206 6 0 2593 2798 266952513 266952308 1.100000e-91 348.0
78 TraesCS3B01G525200 chr1B 93.284 134 4 3 5205 5336 239143243 239143373 5.460000e-45 193.0
79 TraesCS3B01G525200 chr5B 98.537 205 3 0 2595 2799 508038864 508039068 3.930000e-96 363.0
80 TraesCS3B01G525200 chr2B 82.836 402 39 15 1591 1976 657054275 657053888 3.080000e-87 333.0
81 TraesCS3B01G525200 chr7A 90.638 235 16 5 2615 2845 49593495 49593263 1.870000e-79 307.0
82 TraesCS3B01G525200 chr4A 87.083 240 18 11 2601 2833 699458215 699457982 5.300000e-65 259.0
83 TraesCS3B01G525200 chr4A 87.083 240 18 10 2601 2833 699506720 699506487 5.300000e-65 259.0
84 TraesCS3B01G525200 chr4A 86.667 240 19 11 2601 2833 699502053 699501820 2.470000e-63 254.0
85 TraesCS3B01G525200 chr6A 91.176 170 12 3 2768 2936 581456460 581456293 1.500000e-55 228.0
86 TraesCS3B01G525200 chr2A 91.608 143 10 2 2775 2917 68886704 68886564 4.220000e-46 196.0
87 TraesCS3B01G525200 chr2A 91.608 143 10 2 2775 2917 68888078 68887938 4.220000e-46 196.0
88 TraesCS3B01G525200 chr5D 94.531 128 3 3 5212 5336 503292832 503292958 1.520000e-45 195.0
89 TraesCS3B01G525200 chr5D 94.531 128 3 3 5212 5336 512411147 512411273 1.520000e-45 195.0
90 TraesCS3B01G525200 chr4B 92.647 136 6 3 5206 5339 308678810 308678677 5.460000e-45 193.0
91 TraesCS3B01G525200 chr1D 92.701 137 5 4 5206 5339 51870989 51870855 5.460000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G525200 chr3B 766831589 766836927 5338 True 9860.000000 9860 100.000000 1 5339 1 chr3B.!!$R1 5338
1 TraesCS3B01G525200 chr3B 768510187 768513995 3808 False 1253.250000 2599 93.009500 637 5100 4 chr3B.!!$F7 4463
2 TraesCS3B01G525200 chr3B 768611840 768612648 808 False 584.000000 584 81.010000 3783 4554 1 chr3B.!!$F4 771
3 TraesCS3B01G525200 chr3B 789763170 789766222 3052 False 547.000000 562 92.926667 2988 3364 3 chr3B.!!$F9 376
4 TraesCS3B01G525200 chr3B 768261186 768263459 2273 False 428.000000 501 85.464750 879 2512 4 chr3B.!!$F6 1633
5 TraesCS3B01G525200 chr3B 766790368 766792430 2062 True 360.700000 597 85.714667 1058 4427 3 chr3B.!!$R3 3369
6 TraesCS3B01G525200 chr3B 762798689 762800061 1372 True 340.500000 344 96.367500 2593 2799 2 chr3B.!!$R2 206
7 TraesCS3B01G525200 chr3B 768671352 768672108 756 False 281.500000 387 80.690500 2091 3608 2 chr3B.!!$F8 1517
8 TraesCS3B01G525200 chr3A 712307022 712309995 2973 False 1340.000000 2647 90.830000 779 5336 3 chr3A.!!$F3 4557
9 TraesCS3B01G525200 chr3A 712354723 712355360 637 False 560.000000 560 83.105000 3921 4554 1 chr3A.!!$F2 633
10 TraesCS3B01G525200 chr3A 711380893 711385706 4813 True 475.750000 604 84.234250 1058 4134 4 chr3A.!!$R3 3076
11 TraesCS3B01G525200 chr3A 711301791 711302672 881 True 447.500000 761 86.569500 3572 4435 2 chr3A.!!$R2 863
12 TraesCS3B01G525200 chr3A 712341691 712344065 2374 False 355.000000 407 87.552500 1118 1976 2 chr3A.!!$F4 858
13 TraesCS3B01G525200 chr3A 712379101 712381585 2484 False 273.666667 340 81.577000 1037 3846 3 chr3A.!!$F5 2809
14 TraesCS3B01G525200 chr3D 577152070 577156981 4911 True 1046.600000 2617 91.240200 779 5334 5 chr3D.!!$R8 4555
15 TraesCS3B01G525200 chr3D 576889376 576890032 656 True 749.000000 749 87.651000 3671 4316 1 chr3D.!!$R2 645
16 TraesCS3B01G525200 chr3D 576810827 576811359 532 False 540.000000 540 85.872000 1 513 1 chr3D.!!$F2 512
17 TraesCS3B01G525200 chr3D 576853221 576853732 511 True 518.000000 518 85.328000 3643 4147 1 chr3D.!!$R1 504
18 TraesCS3B01G525200 chr3D 575764568 575766662 2094 True 423.250000 832 87.100750 966 4439 4 chr3D.!!$R4 3473
19 TraesCS3B01G525200 chr3D 577143607 577145775 2168 True 411.000000 673 86.021000 872 4438 3 chr3D.!!$R7 3566
20 TraesCS3B01G525200 chr3D 576900160 576901701 1541 True 364.500000 588 82.513000 853 2597 2 chr3D.!!$R6 1744
21 TraesCS3B01G525200 chr3D 577024690 577025195 505 True 331.000000 331 80.189000 1591 2073 1 chr3D.!!$R3 482
22 TraesCS3B01G525200 chr3D 575837115 575840596 3481 True 288.666667 442 82.399000 877 3630 3 chr3D.!!$R5 2753
23 TraesCS3B01G525200 chr6B 41277626 41281610 3984 False 504.666667 510 92.394333 2988 3342 3 chr6B.!!$F3 354
24 TraesCS3B01G525200 chr7D 277898975 277900613 1638 True 279.000000 279 90.909000 2770 2978 2 chr7D.!!$R1 208
25 TraesCS3B01G525200 chr1B 266951170 266952513 1343 True 357.000000 366 97.819000 2593 2799 2 chr1B.!!$R1 206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 757 0.032403 GTACCGTTTTTGCCCCAACC 59.968 55.0 0.00 0.0 0.0 3.77 F
762 763 0.175989 TTTTTGCCCCAACCAACGTC 59.824 50.0 0.00 0.0 0.0 4.34 F
2266 7358 1.165907 TGCTGTTTCTTCCTGCCACG 61.166 55.0 0.00 0.0 0.0 4.94 F
2989 8353 0.172578 CCGCGACTAGATCCAACACA 59.827 55.0 8.23 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 4365 1.648720 CCAGTCCACACGCAAACAG 59.351 57.895 0.00 0.0 0.00 3.16 R
2587 7834 2.642129 CGGCGCCAACAATCACAA 59.358 55.556 28.98 0.0 0.00 3.33 R
3165 8529 0.110644 GTCGTGAGAAGCGGCAAAAG 60.111 55.000 1.45 0.0 45.01 2.27 R
4961 16983 0.109272 TGAAGCCTCTCGCACTAACG 60.109 55.000 0.00 0.0 41.38 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.003718 GCCTGGGCACGAAGTAAGT 60.004 57.895 6.75 0.00 41.61 2.24
168 169 1.472480 GACATTGATTTGGGTGTCCGG 59.528 52.381 0.00 0.00 35.98 5.14
169 170 0.173255 CATTGATTTGGGTGTCCGGC 59.827 55.000 0.00 0.00 35.24 6.13
198 199 1.205055 GGAAGGTTCCTACCCTCAGG 58.795 60.000 1.16 0.00 46.28 3.86
200 201 0.119358 AAGGTTCCTACCCTCAGGCT 59.881 55.000 0.00 0.00 46.28 4.58
202 203 1.677637 GGTTCCTACCCTCAGGCTCG 61.678 65.000 0.00 0.00 38.60 5.03
203 204 2.058595 TTCCTACCCTCAGGCTCGC 61.059 63.158 0.00 0.00 35.49 5.03
204 205 3.541713 CCTACCCTCAGGCTCGCC 61.542 72.222 0.00 0.00 36.11 5.54
205 206 3.541713 CTACCCTCAGGCTCGCCC 61.542 72.222 3.92 0.00 36.11 6.13
219 220 3.521605 GCCCTGGGCGGTTTAATC 58.478 61.111 24.16 0.00 39.62 1.75
220 221 2.125326 GCCCTGGGCGGTTTAATCC 61.125 63.158 24.16 0.00 39.62 3.01
221 222 1.613061 CCCTGGGCGGTTTAATCCT 59.387 57.895 0.00 0.00 0.00 3.24
222 223 0.465642 CCCTGGGCGGTTTAATCCTC 60.466 60.000 0.00 0.00 0.00 3.71
224 225 0.814010 CTGGGCGGTTTAATCCTCCG 60.814 60.000 5.67 5.36 45.94 4.63
229 230 0.464452 CGGTTTAATCCTCCGCTCCT 59.536 55.000 1.19 0.00 37.90 3.69
230 231 1.134491 CGGTTTAATCCTCCGCTCCTT 60.134 52.381 1.19 0.00 37.90 3.36
231 232 2.101917 CGGTTTAATCCTCCGCTCCTTA 59.898 50.000 1.19 0.00 37.90 2.69
232 233 3.464907 GGTTTAATCCTCCGCTCCTTAC 58.535 50.000 0.00 0.00 0.00 2.34
233 234 3.464907 GTTTAATCCTCCGCTCCTTACC 58.535 50.000 0.00 0.00 0.00 2.85
234 235 2.769602 TAATCCTCCGCTCCTTACCT 57.230 50.000 0.00 0.00 0.00 3.08
235 236 1.123928 AATCCTCCGCTCCTTACCTG 58.876 55.000 0.00 0.00 0.00 4.00
239 240 0.608640 CTCCGCTCCTTACCTGTTGT 59.391 55.000 0.00 0.00 0.00 3.32
240 241 1.822990 CTCCGCTCCTTACCTGTTGTA 59.177 52.381 0.00 0.00 0.00 2.41
241 242 2.232941 CTCCGCTCCTTACCTGTTGTAA 59.767 50.000 0.00 0.00 37.09 2.41
243 244 2.344025 CGCTCCTTACCTGTTGTAACC 58.656 52.381 0.00 0.00 34.50 2.85
244 245 2.289195 CGCTCCTTACCTGTTGTAACCA 60.289 50.000 0.00 0.00 34.50 3.67
245 246 3.335579 GCTCCTTACCTGTTGTAACCAG 58.664 50.000 0.00 0.00 34.50 4.00
248 249 3.325716 TCCTTACCTGTTGTAACCAGGTC 59.674 47.826 14.90 0.00 45.35 3.85
249 250 3.323243 CTTACCTGTTGTAACCAGGTCG 58.677 50.000 14.90 5.16 45.35 4.79
250 251 1.125633 ACCTGTTGTAACCAGGTCGT 58.874 50.000 6.27 0.00 45.35 4.34
251 252 1.487558 ACCTGTTGTAACCAGGTCGTT 59.512 47.619 6.27 0.00 45.35 3.85
253 254 1.790623 CTGTTGTAACCAGGTCGTTCG 59.209 52.381 0.00 0.00 0.00 3.95
254 255 1.136695 TGTTGTAACCAGGTCGTTCGT 59.863 47.619 0.00 0.00 0.00 3.85
255 256 1.523934 GTTGTAACCAGGTCGTTCGTG 59.476 52.381 0.00 0.00 0.00 4.35
259 260 2.420043 CCAGGTCGTTCGTGGTGT 59.580 61.111 11.64 0.00 44.33 4.16
261 262 2.014554 CAGGTCGTTCGTGGTGTCG 61.015 63.158 0.00 0.00 0.00 4.35
262 263 2.732094 GGTCGTTCGTGGTGTCGG 60.732 66.667 0.00 0.00 0.00 4.79
263 264 2.026590 GTCGTTCGTGGTGTCGGT 59.973 61.111 0.00 0.00 0.00 4.69
264 265 2.012948 GTCGTTCGTGGTGTCGGTC 61.013 63.158 0.00 0.00 0.00 4.79
265 266 3.095278 CGTTCGTGGTGTCGGTCG 61.095 66.667 0.00 0.00 0.00 4.79
266 267 3.400590 GTTCGTGGTGTCGGTCGC 61.401 66.667 0.00 0.00 0.00 5.19
270 271 4.612412 GTGGTGTCGGTCGCCCAA 62.612 66.667 2.46 0.00 45.41 4.12
272 273 4.612412 GGTGTCGGTCGCCCAACA 62.612 66.667 0.00 0.00 40.57 3.33
273 274 2.589442 GTGTCGGTCGCCCAACAA 60.589 61.111 0.00 0.00 0.00 2.83
274 275 2.181521 GTGTCGGTCGCCCAACAAA 61.182 57.895 0.00 0.00 0.00 2.83
275 276 2.181521 TGTCGGTCGCCCAACAAAC 61.182 57.895 0.00 0.00 0.00 2.93
276 277 2.592287 TCGGTCGCCCAACAAACC 60.592 61.111 0.00 0.00 0.00 3.27
278 279 2.592287 GGTCGCCCAACAAACCGA 60.592 61.111 0.00 0.00 0.00 4.69
279 280 1.969589 GGTCGCCCAACAAACCGAT 60.970 57.895 0.00 0.00 31.96 4.18
280 281 1.209127 GTCGCCCAACAAACCGATG 59.791 57.895 0.00 0.00 31.96 3.84
281 282 2.126502 CGCCCAACAAACCGATGC 60.127 61.111 0.00 0.00 0.00 3.91
282 283 2.261361 GCCCAACAAACCGATGCC 59.739 61.111 0.00 0.00 0.00 4.40
283 284 2.969827 CCCAACAAACCGATGCCC 59.030 61.111 0.00 0.00 0.00 5.36
284 285 1.606313 CCCAACAAACCGATGCCCT 60.606 57.895 0.00 0.00 0.00 5.19
285 286 0.322997 CCCAACAAACCGATGCCCTA 60.323 55.000 0.00 0.00 0.00 3.53
286 287 1.540267 CCAACAAACCGATGCCCTAA 58.460 50.000 0.00 0.00 0.00 2.69
287 288 1.201414 CCAACAAACCGATGCCCTAAC 59.799 52.381 0.00 0.00 0.00 2.34
289 290 1.821216 ACAAACCGATGCCCTAACAG 58.179 50.000 0.00 0.00 0.00 3.16
290 291 1.073284 ACAAACCGATGCCCTAACAGT 59.927 47.619 0.00 0.00 0.00 3.55
291 292 2.303600 ACAAACCGATGCCCTAACAGTA 59.696 45.455 0.00 0.00 0.00 2.74
295 296 2.104281 ACCGATGCCCTAACAGTATTCC 59.896 50.000 0.00 0.00 0.00 3.01
298 299 0.179468 TGCCCTAACAGTATTCCCGC 59.821 55.000 0.00 0.00 0.00 6.13
299 300 0.179468 GCCCTAACAGTATTCCCGCA 59.821 55.000 0.00 0.00 0.00 5.69
300 301 1.949465 CCCTAACAGTATTCCCGCAC 58.051 55.000 0.00 0.00 0.00 5.34
301 302 1.485066 CCCTAACAGTATTCCCGCACT 59.515 52.381 0.00 0.00 0.00 4.40
302 303 2.483188 CCCTAACAGTATTCCCGCACTC 60.483 54.545 0.00 0.00 0.00 3.51
304 305 3.181465 CCTAACAGTATTCCCGCACTCAT 60.181 47.826 0.00 0.00 0.00 2.90
306 307 1.202417 ACAGTATTCCCGCACTCATCG 60.202 52.381 0.00 0.00 0.00 3.84
308 309 1.480954 AGTATTCCCGCACTCATCGTT 59.519 47.619 0.00 0.00 0.00 3.85
309 310 1.859080 GTATTCCCGCACTCATCGTTC 59.141 52.381 0.00 0.00 0.00 3.95
310 311 0.462047 ATTCCCGCACTCATCGTTCC 60.462 55.000 0.00 0.00 0.00 3.62
311 312 2.829043 TTCCCGCACTCATCGTTCCG 62.829 60.000 0.00 0.00 0.00 4.30
312 313 2.126071 CCGCACTCATCGTTCCGT 60.126 61.111 0.00 0.00 0.00 4.69
314 315 1.683790 CCGCACTCATCGTTCCGTTC 61.684 60.000 0.00 0.00 0.00 3.95
315 316 0.732880 CGCACTCATCGTTCCGTTCT 60.733 55.000 0.00 0.00 0.00 3.01
316 317 0.716108 GCACTCATCGTTCCGTTCTG 59.284 55.000 0.00 0.00 0.00 3.02
317 318 1.935300 GCACTCATCGTTCCGTTCTGT 60.935 52.381 0.00 0.00 0.00 3.41
318 319 1.986378 CACTCATCGTTCCGTTCTGTC 59.014 52.381 0.00 0.00 0.00 3.51
319 320 1.067776 ACTCATCGTTCCGTTCTGTCC 60.068 52.381 0.00 0.00 0.00 4.02
320 321 0.963225 TCATCGTTCCGTTCTGTCCA 59.037 50.000 0.00 0.00 0.00 4.02
321 322 1.067846 TCATCGTTCCGTTCTGTCCAG 60.068 52.381 0.00 0.00 0.00 3.86
322 323 1.067846 CATCGTTCCGTTCTGTCCAGA 60.068 52.381 0.00 0.00 35.27 3.86
323 324 0.313043 TCGTTCCGTTCTGTCCAGAC 59.687 55.000 0.00 0.00 37.14 3.51
324 325 1.002250 CGTTCCGTTCTGTCCAGACG 61.002 60.000 0.00 4.73 37.14 4.18
325 326 0.666577 GTTCCGTTCTGTCCAGACGG 60.667 60.000 21.73 21.73 45.11 4.79
326 327 2.430382 TTCCGTTCTGTCCAGACGGC 62.430 60.000 22.39 7.58 44.29 5.68
327 328 2.432628 CGTTCTGTCCAGACGGCC 60.433 66.667 1.52 0.00 37.14 6.13
328 329 2.047179 GTTCTGTCCAGACGGCCC 60.047 66.667 0.00 0.00 37.14 5.80
329 330 2.525629 TTCTGTCCAGACGGCCCA 60.526 61.111 0.00 0.00 37.14 5.36
330 331 2.583441 TTCTGTCCAGACGGCCCAG 61.583 63.158 0.00 0.00 37.14 4.45
331 332 4.767255 CTGTCCAGACGGCCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
333 334 4.329545 GTCCAGACGGCCCAGCAA 62.330 66.667 0.00 0.00 0.00 3.91
334 335 4.329545 TCCAGACGGCCCAGCAAC 62.330 66.667 0.00 0.00 0.00 4.17
335 336 4.641645 CCAGACGGCCCAGCAACA 62.642 66.667 0.00 0.00 0.00 3.33
336 337 2.360350 CAGACGGCCCAGCAACAT 60.360 61.111 0.00 0.00 0.00 2.71
337 338 2.045926 AGACGGCCCAGCAACATC 60.046 61.111 0.00 0.00 0.00 3.06
339 340 2.360350 ACGGCCCAGCAACATCAG 60.360 61.111 0.00 0.00 0.00 2.90
341 342 2.401766 CGGCCCAGCAACATCAGTC 61.402 63.158 0.00 0.00 0.00 3.51
342 343 1.001641 GGCCCAGCAACATCAGTCT 60.002 57.895 0.00 0.00 0.00 3.24
343 344 1.028868 GGCCCAGCAACATCAGTCTC 61.029 60.000 0.00 0.00 0.00 3.36
344 345 1.364626 GCCCAGCAACATCAGTCTCG 61.365 60.000 0.00 0.00 0.00 4.04
346 347 1.609061 CCCAGCAACATCAGTCTCGTT 60.609 52.381 0.00 0.00 0.00 3.85
347 348 1.462283 CCAGCAACATCAGTCTCGTTG 59.538 52.381 0.00 0.00 42.29 4.10
349 350 2.998670 CAGCAACATCAGTCTCGTTGAT 59.001 45.455 5.73 0.00 42.03 2.57
350 351 3.434641 CAGCAACATCAGTCTCGTTGATT 59.565 43.478 5.73 0.00 42.03 2.57
351 352 3.434641 AGCAACATCAGTCTCGTTGATTG 59.565 43.478 5.73 0.00 42.03 2.67
352 353 3.740590 CAACATCAGTCTCGTTGATTGC 58.259 45.455 0.00 0.00 42.03 3.56
353 354 3.044235 ACATCAGTCTCGTTGATTGCA 57.956 42.857 0.00 0.00 33.14 4.08
354 355 3.603532 ACATCAGTCTCGTTGATTGCAT 58.396 40.909 0.00 0.00 33.14 3.96
355 356 3.620374 ACATCAGTCTCGTTGATTGCATC 59.380 43.478 0.00 0.00 33.14 3.91
356 357 3.317603 TCAGTCTCGTTGATTGCATCA 57.682 42.857 0.00 0.00 37.55 3.07
357 358 2.995939 TCAGTCTCGTTGATTGCATCAC 59.004 45.455 0.00 0.00 39.39 3.06
358 359 2.094894 CAGTCTCGTTGATTGCATCACC 59.905 50.000 0.00 0.00 39.39 4.02
359 360 2.027745 AGTCTCGTTGATTGCATCACCT 60.028 45.455 0.00 0.00 39.39 4.00
360 361 2.744202 GTCTCGTTGATTGCATCACCTT 59.256 45.455 0.00 0.00 39.39 3.50
361 362 3.002791 TCTCGTTGATTGCATCACCTTC 58.997 45.455 0.00 0.00 39.39 3.46
362 363 3.005554 CTCGTTGATTGCATCACCTTCT 58.994 45.455 0.00 0.00 39.39 2.85
364 365 4.769688 TCGTTGATTGCATCACCTTCTAT 58.230 39.130 0.00 0.00 39.39 1.98
365 366 4.811024 TCGTTGATTGCATCACCTTCTATC 59.189 41.667 0.00 0.00 39.39 2.08
367 368 5.237996 CGTTGATTGCATCACCTTCTATCAT 59.762 40.000 0.00 0.00 39.39 2.45
369 370 4.517832 TGATTGCATCACCTTCTATCATGC 59.482 41.667 0.00 0.00 40.29 4.06
370 371 2.854963 TGCATCACCTTCTATCATGCC 58.145 47.619 0.00 0.00 39.33 4.40
371 372 2.173143 TGCATCACCTTCTATCATGCCA 59.827 45.455 0.00 0.00 39.33 4.92
373 374 3.825014 GCATCACCTTCTATCATGCCAAT 59.175 43.478 0.00 0.00 34.91 3.16
374 375 4.321008 GCATCACCTTCTATCATGCCAATG 60.321 45.833 0.00 0.00 34.91 2.82
375 376 3.824133 TCACCTTCTATCATGCCAATGG 58.176 45.455 0.00 0.00 34.30 3.16
386 387 1.364901 GCCAATGGCCCATGAATCG 59.635 57.895 14.47 0.00 44.06 3.34
387 388 2.043625 CCAATGGCCCATGAATCGG 58.956 57.895 0.00 0.00 0.00 4.18
392 393 2.595095 GCCCATGAATCGGGGTGA 59.405 61.111 10.84 0.00 46.59 4.02
393 394 1.077068 GCCCATGAATCGGGGTGAA 60.077 57.895 10.84 0.00 46.59 3.18
395 396 0.255890 CCCATGAATCGGGGTGAAGT 59.744 55.000 0.00 0.00 40.35 3.01
397 398 1.745087 CCATGAATCGGGGTGAAGTTG 59.255 52.381 0.00 0.00 0.00 3.16
400 401 1.165270 GAATCGGGGTGAAGTTGTGG 58.835 55.000 0.00 0.00 0.00 4.17
401 402 0.768622 AATCGGGGTGAAGTTGTGGA 59.231 50.000 0.00 0.00 0.00 4.02
402 403 0.768622 ATCGGGGTGAAGTTGTGGAA 59.231 50.000 0.00 0.00 0.00 3.53
405 406 1.960689 CGGGGTGAAGTTGTGGAATTT 59.039 47.619 0.00 0.00 0.00 1.82
406 407 2.364002 CGGGGTGAAGTTGTGGAATTTT 59.636 45.455 0.00 0.00 0.00 1.82
408 409 3.386402 GGGGTGAAGTTGTGGAATTTTGA 59.614 43.478 0.00 0.00 0.00 2.69
410 411 4.142049 GGGTGAAGTTGTGGAATTTTGACA 60.142 41.667 0.00 0.00 0.00 3.58
411 412 4.803613 GGTGAAGTTGTGGAATTTTGACAC 59.196 41.667 0.00 0.00 35.75 3.67
414 415 5.047021 TGAAGTTGTGGAATTTTGACACCAA 60.047 36.000 0.00 0.00 34.33 3.67
416 417 5.600696 AGTTGTGGAATTTTGACACCAATC 58.399 37.500 0.00 0.00 34.33 2.67
418 419 5.199024 TGTGGAATTTTGACACCAATCAG 57.801 39.130 0.00 0.00 34.33 2.90
419 420 3.989817 GTGGAATTTTGACACCAATCAGC 59.010 43.478 0.00 0.00 34.11 4.26
422 423 2.798976 TTTTGACACCAATCAGCTGC 57.201 45.000 9.47 0.00 31.46 5.25
423 424 1.689984 TTTGACACCAATCAGCTGCA 58.310 45.000 9.47 0.00 31.46 4.41
424 425 1.913778 TTGACACCAATCAGCTGCAT 58.086 45.000 9.47 0.43 0.00 3.96
425 426 1.913778 TGACACCAATCAGCTGCATT 58.086 45.000 9.47 7.19 0.00 3.56
426 427 1.814394 TGACACCAATCAGCTGCATTC 59.186 47.619 9.47 0.00 0.00 2.67
427 428 1.814394 GACACCAATCAGCTGCATTCA 59.186 47.619 9.47 0.00 0.00 2.57
429 430 2.629137 ACACCAATCAGCTGCATTCAAA 59.371 40.909 9.47 0.00 0.00 2.69
430 431 3.250744 CACCAATCAGCTGCATTCAAAG 58.749 45.455 9.47 2.07 0.00 2.77
431 432 3.057104 CACCAATCAGCTGCATTCAAAGA 60.057 43.478 9.47 0.00 0.00 2.52
432 433 3.192844 ACCAATCAGCTGCATTCAAAGAG 59.807 43.478 9.47 0.00 0.00 2.85
433 434 3.192844 CCAATCAGCTGCATTCAAAGAGT 59.807 43.478 9.47 0.00 0.00 3.24
435 436 1.538512 TCAGCTGCATTCAAAGAGTGC 59.461 47.619 9.47 7.45 43.88 4.40
436 437 0.520404 AGCTGCATTCAAAGAGTGCG 59.480 50.000 1.02 6.15 45.99 5.34
438 439 1.959747 CTGCATTCAAAGAGTGCGTG 58.040 50.000 9.43 2.55 45.99 5.34
439 440 1.532437 CTGCATTCAAAGAGTGCGTGA 59.468 47.619 9.43 0.00 45.99 4.35
442 443 3.004629 TGCATTCAAAGAGTGCGTGAAAT 59.995 39.130 9.43 0.00 45.99 2.17
443 444 4.215185 TGCATTCAAAGAGTGCGTGAAATA 59.785 37.500 9.43 0.00 45.99 1.40
444 445 5.106197 TGCATTCAAAGAGTGCGTGAAATAT 60.106 36.000 9.43 0.00 45.99 1.28
446 447 4.840401 TCAAAGAGTGCGTGAAATATCG 57.160 40.909 0.00 0.00 0.00 2.92
447 448 4.242475 TCAAAGAGTGCGTGAAATATCGT 58.758 39.130 0.00 0.00 0.00 3.73
448 449 4.688879 TCAAAGAGTGCGTGAAATATCGTT 59.311 37.500 0.00 0.00 0.00 3.85
449 450 5.178623 TCAAAGAGTGCGTGAAATATCGTTT 59.821 36.000 0.00 0.00 0.00 3.60
451 452 3.617263 AGAGTGCGTGAAATATCGTTTCC 59.383 43.478 0.00 0.00 0.00 3.13
452 453 3.596214 AGTGCGTGAAATATCGTTTCCT 58.404 40.909 0.00 0.00 0.00 3.36
453 454 3.370978 AGTGCGTGAAATATCGTTTCCTG 59.629 43.478 0.00 0.00 0.00 3.86
454 455 3.369756 GTGCGTGAAATATCGTTTCCTGA 59.630 43.478 0.00 0.00 0.00 3.86
456 457 3.001330 GCGTGAAATATCGTTTCCTGAGG 59.999 47.826 0.00 0.00 0.00 3.86
457 458 3.001330 CGTGAAATATCGTTTCCTGAGGC 59.999 47.826 0.00 0.00 0.00 4.70
459 460 3.054728 TGAAATATCGTTTCCTGAGGCCA 60.055 43.478 5.01 0.00 0.00 5.36
462 463 0.036010 ATCGTTTCCTGAGGCCACAG 60.036 55.000 22.12 22.12 37.61 3.66
464 465 0.951040 CGTTTCCTGAGGCCACAGTC 60.951 60.000 25.93 13.47 36.30 3.51
465 466 0.606673 GTTTCCTGAGGCCACAGTCC 60.607 60.000 25.93 9.13 36.30 3.85
470 471 3.695606 GAGGCCACAGTCCTCGCA 61.696 66.667 5.01 0.00 40.51 5.10
472 473 3.695606 GGCCACAGTCCTCGCAGA 61.696 66.667 0.00 0.00 0.00 4.26
473 474 2.343758 GCCACAGTCCTCGCAGAA 59.656 61.111 0.00 0.00 34.09 3.02
474 475 1.301716 GCCACAGTCCTCGCAGAAA 60.302 57.895 0.00 0.00 34.09 2.52
475 476 0.674895 GCCACAGTCCTCGCAGAAAT 60.675 55.000 0.00 0.00 34.09 2.17
476 477 1.363744 CCACAGTCCTCGCAGAAATC 58.636 55.000 0.00 0.00 34.09 2.17
478 479 0.888619 ACAGTCCTCGCAGAAATCGA 59.111 50.000 0.00 0.00 34.09 3.59
479 480 1.478510 ACAGTCCTCGCAGAAATCGAT 59.521 47.619 0.00 0.00 34.09 3.59
480 481 2.123342 CAGTCCTCGCAGAAATCGATC 58.877 52.381 0.00 0.00 34.09 3.69
481 482 2.028130 AGTCCTCGCAGAAATCGATCT 58.972 47.619 0.00 0.00 34.09 2.75
482 483 2.034053 AGTCCTCGCAGAAATCGATCTC 59.966 50.000 0.00 0.00 34.09 2.75
483 484 2.034053 GTCCTCGCAGAAATCGATCTCT 59.966 50.000 0.00 0.00 34.09 3.10
484 485 2.690497 TCCTCGCAGAAATCGATCTCTT 59.310 45.455 0.00 0.00 34.09 2.85
485 486 3.049206 CCTCGCAGAAATCGATCTCTTC 58.951 50.000 0.00 0.00 34.09 2.87
486 487 3.049206 CTCGCAGAAATCGATCTCTTCC 58.951 50.000 0.00 0.00 34.09 3.46
487 488 2.131183 CGCAGAAATCGATCTCTTCCC 58.869 52.381 0.00 0.00 0.00 3.97
488 489 2.223923 CGCAGAAATCGATCTCTTCCCT 60.224 50.000 0.00 0.00 0.00 4.20
489 490 3.004839 CGCAGAAATCGATCTCTTCCCTA 59.995 47.826 0.00 0.00 0.00 3.53
490 491 4.321601 CGCAGAAATCGATCTCTTCCCTAT 60.322 45.833 0.00 0.00 0.00 2.57
491 492 4.928615 GCAGAAATCGATCTCTTCCCTATG 59.071 45.833 0.00 0.00 0.00 2.23
492 493 5.477510 CAGAAATCGATCTCTTCCCTATGG 58.522 45.833 0.00 0.00 0.00 2.74
495 496 0.962489 CGATCTCTTCCCTATGGCGT 59.038 55.000 0.00 0.00 0.00 5.68
497 498 2.608261 CGATCTCTTCCCTATGGCGTTC 60.608 54.545 0.00 0.00 0.00 3.95
498 499 2.160721 TCTCTTCCCTATGGCGTTCT 57.839 50.000 0.00 0.00 0.00 3.01
499 500 2.467880 TCTCTTCCCTATGGCGTTCTT 58.532 47.619 0.00 0.00 0.00 2.52
500 501 2.431057 TCTCTTCCCTATGGCGTTCTTC 59.569 50.000 0.00 0.00 0.00 2.87
502 503 1.136305 CTTCCCTATGGCGTTCTTCGA 59.864 52.381 0.00 0.00 42.86 3.71
503 504 0.744874 TCCCTATGGCGTTCTTCGAG 59.255 55.000 0.00 0.00 42.86 4.04
504 505 0.249489 CCCTATGGCGTTCTTCGAGG 60.249 60.000 0.00 0.00 42.86 4.63
505 506 0.744874 CCTATGGCGTTCTTCGAGGA 59.255 55.000 0.00 0.00 42.86 3.71
506 507 1.341531 CCTATGGCGTTCTTCGAGGAT 59.658 52.381 0.00 0.00 42.86 3.24
507 508 2.608261 CCTATGGCGTTCTTCGAGGATC 60.608 54.545 0.00 0.00 42.86 3.36
520 521 2.474410 GAGGATCGGTTTGAACACCT 57.526 50.000 0.00 0.00 34.22 4.00
521 522 2.347731 GAGGATCGGTTTGAACACCTC 58.652 52.381 0.00 0.00 37.87 3.85
522 523 1.697432 AGGATCGGTTTGAACACCTCA 59.303 47.619 0.00 0.00 34.22 3.86
523 524 2.076863 GGATCGGTTTGAACACCTCAG 58.923 52.381 0.00 0.00 34.81 3.35
524 525 2.550208 GGATCGGTTTGAACACCTCAGT 60.550 50.000 0.00 0.00 34.81 3.41
527 528 2.093394 TCGGTTTGAACACCTCAGTTGA 60.093 45.455 0.00 0.00 34.81 3.18
528 529 2.680841 CGGTTTGAACACCTCAGTTGAA 59.319 45.455 0.00 0.00 34.81 2.69
529 530 3.486875 CGGTTTGAACACCTCAGTTGAAC 60.487 47.826 0.00 0.00 34.81 3.18
530 531 3.181490 GGTTTGAACACCTCAGTTGAACC 60.181 47.826 0.00 0.00 37.25 3.62
531 532 3.644966 TTGAACACCTCAGTTGAACCT 57.355 42.857 0.00 0.00 34.81 3.50
532 533 3.194005 TGAACACCTCAGTTGAACCTC 57.806 47.619 0.00 0.00 0.00 3.85
533 534 2.503765 TGAACACCTCAGTTGAACCTCA 59.496 45.455 0.00 0.00 0.00 3.86
534 535 2.622064 ACACCTCAGTTGAACCTCAC 57.378 50.000 0.00 0.00 0.00 3.51
535 536 1.837439 ACACCTCAGTTGAACCTCACA 59.163 47.619 0.00 0.00 0.00 3.58
538 539 2.224621 ACCTCAGTTGAACCTCACATGG 60.225 50.000 0.00 0.00 0.00 3.66
548 549 3.328535 ACCTCACATGGTTTTCCCTTT 57.671 42.857 0.00 0.00 36.89 3.11
549 550 4.463050 ACCTCACATGGTTTTCCCTTTA 57.537 40.909 0.00 0.00 36.89 1.85
550 551 4.810345 ACCTCACATGGTTTTCCCTTTAA 58.190 39.130 0.00 0.00 36.89 1.52
551 552 5.212745 ACCTCACATGGTTTTCCCTTTAAA 58.787 37.500 0.00 0.00 36.89 1.52
552 553 5.663556 ACCTCACATGGTTTTCCCTTTAAAA 59.336 36.000 0.00 0.00 36.89 1.52
553 554 6.157123 ACCTCACATGGTTTTCCCTTTAAAAA 59.843 34.615 0.00 0.00 36.89 1.94
577 578 7.595819 AAAAATTCTAGTTCCCATGTGAACA 57.404 32.000 20.94 8.04 45.62 3.18
578 579 7.595819 AAAATTCTAGTTCCCATGTGAACAA 57.404 32.000 20.94 8.84 45.62 2.83
579 580 6.824305 AATTCTAGTTCCCATGTGAACAAG 57.176 37.500 20.94 0.00 45.62 3.16
580 581 4.286297 TCTAGTTCCCATGTGAACAAGG 57.714 45.455 20.94 11.23 45.62 3.61
581 582 3.907474 TCTAGTTCCCATGTGAACAAGGA 59.093 43.478 20.94 12.99 45.62 3.36
584 585 1.067295 TCCCATGTGAACAAGGAGCT 58.933 50.000 6.29 0.00 36.89 4.09
586 587 1.457346 CCATGTGAACAAGGAGCTCC 58.543 55.000 26.22 26.22 36.89 4.70
602 603 7.872113 AGGAGCTCCTAAAACAAAATATCAG 57.128 36.000 34.40 0.00 46.48 2.90
603 604 6.830838 AGGAGCTCCTAAAACAAAATATCAGG 59.169 38.462 34.40 0.00 46.48 3.86
604 605 6.828785 GGAGCTCCTAAAACAAAATATCAGGA 59.171 38.462 26.25 0.00 0.00 3.86
607 608 7.669722 AGCTCCTAAAACAAAATATCAGGAACA 59.330 33.333 0.00 0.00 30.64 3.18
608 609 8.303876 GCTCCTAAAACAAAATATCAGGAACAA 58.696 33.333 0.00 0.00 30.64 2.83
630 631 0.040794 AACACTAGTCCCCTACGCCT 59.959 55.000 0.00 0.00 0.00 5.52
632 633 1.316651 CACTAGTCCCCTACGCCTAC 58.683 60.000 0.00 0.00 0.00 3.18
636 637 2.123597 TCCCCTACGCCTACGCAT 60.124 61.111 0.00 0.00 45.53 4.73
637 638 2.029073 CCCCTACGCCTACGCATG 59.971 66.667 0.00 0.00 45.53 4.06
638 639 2.029073 CCCTACGCCTACGCATGG 59.971 66.667 0.00 0.00 45.53 3.66
639 640 2.495409 CCCTACGCCTACGCATGGA 61.495 63.158 0.00 0.00 45.53 3.41
640 641 1.299926 CCTACGCCTACGCATGGAC 60.300 63.158 0.00 0.00 45.53 4.02
641 642 1.299926 CTACGCCTACGCATGGACC 60.300 63.158 0.00 0.00 45.53 4.46
671 672 4.364409 GTCAACGGCGCAACGACC 62.364 66.667 10.83 0.00 37.61 4.79
713 714 3.893763 CTCCGCGCCATCTCGTCT 61.894 66.667 0.00 0.00 0.00 4.18
714 715 3.815569 CTCCGCGCCATCTCGTCTC 62.816 68.421 0.00 0.00 0.00 3.36
716 717 4.538283 CGCGCCATCTCGTCTCGT 62.538 66.667 0.00 0.00 0.00 4.18
717 718 2.202623 GCGCCATCTCGTCTCGTT 60.203 61.111 0.00 0.00 0.00 3.85
718 719 1.805945 GCGCCATCTCGTCTCGTTT 60.806 57.895 0.00 0.00 0.00 3.60
719 720 0.524816 GCGCCATCTCGTCTCGTTTA 60.525 55.000 0.00 0.00 0.00 2.01
720 721 1.864435 GCGCCATCTCGTCTCGTTTAT 60.864 52.381 0.00 0.00 0.00 1.40
723 724 3.846896 CGCCATCTCGTCTCGTTTATATC 59.153 47.826 0.00 0.00 0.00 1.63
744 745 4.766088 GTCTCGCCGCGTACCGTT 62.766 66.667 13.39 0.00 34.38 4.44
745 746 4.041917 TCTCGCCGCGTACCGTTT 62.042 61.111 13.39 0.00 34.38 3.60
747 748 2.660612 CTCGCCGCGTACCGTTTTT 61.661 57.895 13.39 0.00 34.38 1.94
748 749 2.498046 CGCCGCGTACCGTTTTTG 60.498 61.111 4.92 0.00 34.38 2.44
749 750 2.797850 GCCGCGTACCGTTTTTGC 60.798 61.111 4.92 0.00 34.38 3.68
751 752 2.127156 CGCGTACCGTTTTTGCCC 60.127 61.111 0.00 0.00 0.00 5.36
752 753 2.256158 GCGTACCGTTTTTGCCCC 59.744 61.111 0.00 0.00 0.00 5.80
754 755 2.031360 CGTACCGTTTTTGCCCCAA 58.969 52.632 0.00 0.00 0.00 4.12
756 757 0.032403 GTACCGTTTTTGCCCCAACC 59.968 55.000 0.00 0.00 0.00 3.77
757 758 0.396695 TACCGTTTTTGCCCCAACCA 60.397 50.000 0.00 0.00 0.00 3.67
758 759 1.265454 ACCGTTTTTGCCCCAACCAA 61.265 50.000 0.00 0.00 0.00 3.67
759 760 0.812014 CCGTTTTTGCCCCAACCAAC 60.812 55.000 0.00 0.00 0.00 3.77
760 761 1.148759 CGTTTTTGCCCCAACCAACG 61.149 55.000 7.02 7.02 35.47 4.10
762 763 0.175989 TTTTTGCCCCAACCAACGTC 59.824 50.000 0.00 0.00 0.00 4.34
763 764 1.677637 TTTTGCCCCAACCAACGTCC 61.678 55.000 0.00 0.00 0.00 4.79
764 765 4.589675 TGCCCCAACCAACGTCCC 62.590 66.667 0.00 0.00 0.00 4.46
765 766 4.280019 GCCCCAACCAACGTCCCT 62.280 66.667 0.00 0.00 0.00 4.20
870 958 4.035814 CTCCCATCTGATCTGCCCATATA 58.964 47.826 0.00 0.00 0.00 0.86
955 1051 2.821679 CTTTTGCTCCTCCCGTCCCC 62.822 65.000 0.00 0.00 0.00 4.81
956 1052 3.864983 TTTGCTCCTCCCGTCCCCT 62.865 63.158 0.00 0.00 0.00 4.79
957 1053 4.779733 TGCTCCTCCCGTCCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
1184 1327 1.871676 TCCGGAAGATCTACGTCATCG 59.128 52.381 0.00 2.88 43.34 3.84
1492 3473 1.779061 TTGAGGGAGGGCCTTGTGAC 61.779 60.000 7.89 0.00 0.00 3.67
1499 3489 1.600916 GGGCCTTGTGACAGGACAC 60.601 63.158 0.84 0.00 45.24 3.67
1650 3719 8.759641 CATGTACTCTTAATGCTGCTTTACTAG 58.240 37.037 7.41 9.83 0.00 2.57
1651 3720 8.063200 TGTACTCTTAATGCTGCTTTACTAGA 57.937 34.615 16.47 12.65 0.00 2.43
1652 3721 7.974501 TGTACTCTTAATGCTGCTTTACTAGAC 59.025 37.037 16.47 12.32 0.00 2.59
1713 3800 8.297426 TGCTGGTATAATCGATCTGTTACTAAG 58.703 37.037 0.00 3.14 0.00 2.18
1901 4025 2.999355 GCTCCTAGCTTGTTCTTGAGTG 59.001 50.000 0.00 0.00 38.45 3.51
2266 7358 1.165907 TGCTGTTTCTTCCTGCCACG 61.166 55.000 0.00 0.00 0.00 4.94
2271 7363 1.407618 GTTTCTTCCTGCCACGGTTTT 59.592 47.619 0.00 0.00 0.00 2.43
2311 7403 9.499479 AGTGATGTGATAGTATCAATTTGATCC 57.501 33.333 14.99 4.54 41.69 3.36
2469 7566 7.604164 CAGACTACTGTGGTGACAAGAAAATAT 59.396 37.037 0.09 0.00 46.06 1.28
2587 7834 4.207165 ACAAGTTATGTTGTCAGGCACTT 58.793 39.130 0.00 0.00 40.06 3.16
2589 7836 4.836125 AGTTATGTTGTCAGGCACTTTG 57.164 40.909 0.00 0.00 34.60 2.77
2590 7837 4.207165 AGTTATGTTGTCAGGCACTTTGT 58.793 39.130 0.00 0.00 34.60 2.83
2591 7838 4.036734 AGTTATGTTGTCAGGCACTTTGTG 59.963 41.667 0.00 0.00 34.60 3.33
2804 8051 1.592223 CCTCTCGGCCTCGTTTTCT 59.408 57.895 0.00 0.00 37.69 2.52
2815 8062 3.120511 GCCTCGTTTTCTCATTCACTCAC 60.121 47.826 0.00 0.00 0.00 3.51
2816 8063 4.058124 CCTCGTTTTCTCATTCACTCACA 58.942 43.478 0.00 0.00 0.00 3.58
2836 8083 6.515832 TCACAGCAACATATATACACAGAGG 58.484 40.000 0.00 0.00 0.00 3.69
2886 8226 3.070018 ACTACTAAGTCACGTACGCACT 58.930 45.455 16.72 14.74 0.00 4.40
2888 8228 4.690748 ACTACTAAGTCACGTACGCACTAA 59.309 41.667 16.72 4.12 0.00 2.24
2920 8284 2.772515 AGACCAGGCCACTAACTAATCC 59.227 50.000 5.01 0.00 0.00 3.01
2972 8336 2.464459 GGAATCGCTCCAACAGCCG 61.464 63.158 0.00 0.00 46.74 5.52
2978 8342 2.571757 CTCCAACAGCCGCGACTA 59.428 61.111 8.23 0.00 0.00 2.59
2980 8344 1.934220 CTCCAACAGCCGCGACTAGA 61.934 60.000 8.23 0.00 0.00 2.43
2981 8345 1.141881 CCAACAGCCGCGACTAGAT 59.858 57.895 8.23 0.00 0.00 1.98
2982 8346 0.872021 CCAACAGCCGCGACTAGATC 60.872 60.000 8.23 0.00 0.00 2.75
2983 8347 0.872021 CAACAGCCGCGACTAGATCC 60.872 60.000 8.23 0.00 0.00 3.36
2984 8348 1.320344 AACAGCCGCGACTAGATCCA 61.320 55.000 8.23 0.00 0.00 3.41
2985 8349 1.320344 ACAGCCGCGACTAGATCCAA 61.320 55.000 8.23 0.00 0.00 3.53
2986 8350 0.872021 CAGCCGCGACTAGATCCAAC 60.872 60.000 8.23 0.00 0.00 3.77
2987 8351 1.141019 GCCGCGACTAGATCCAACA 59.859 57.895 8.23 0.00 0.00 3.33
2988 8352 1.146358 GCCGCGACTAGATCCAACAC 61.146 60.000 8.23 0.00 0.00 3.32
2989 8353 0.172578 CCGCGACTAGATCCAACACA 59.827 55.000 8.23 0.00 0.00 3.72
2990 8354 1.202417 CCGCGACTAGATCCAACACAT 60.202 52.381 8.23 0.00 0.00 3.21
2991 8355 1.854743 CGCGACTAGATCCAACACATG 59.145 52.381 0.00 0.00 0.00 3.21
2992 8356 1.594862 GCGACTAGATCCAACACATGC 59.405 52.381 0.00 0.00 0.00 4.06
2993 8357 2.892374 CGACTAGATCCAACACATGCA 58.108 47.619 0.00 0.00 0.00 3.96
2994 8358 3.461061 CGACTAGATCCAACACATGCAT 58.539 45.455 0.00 0.00 0.00 3.96
3112 8476 8.375506 ACCTTCTCAACAAACTATATGACTTGA 58.624 33.333 0.00 0.00 0.00 3.02
3142 8506 1.662629 CGACTCAACATGATGCAGTCC 59.337 52.381 19.77 9.86 0.00 3.85
3163 8527 1.153107 CATGCTTCGGCCTCCATGA 60.153 57.895 13.34 0.00 37.78 3.07
3165 8529 0.250640 ATGCTTCGGCCTCCATGATC 60.251 55.000 0.00 0.00 40.91 2.92
3187 8551 2.132517 TTGCCGCTTCTCACGACGTA 62.133 55.000 0.00 0.00 0.00 3.57
3188 8552 1.443194 GCCGCTTCTCACGACGTAA 60.443 57.895 0.00 0.00 0.00 3.18
3204 8568 1.589803 GTAACCGTATCCCATGGCAC 58.410 55.000 6.09 2.64 36.69 5.01
3275 10455 2.740055 CCTTCGCACGCTGAGCTT 60.740 61.111 1.78 0.00 0.00 3.74
3388 13783 6.266103 AGTGATCTGTCATCCATTTGTGTTTT 59.734 34.615 0.00 0.00 36.60 2.43
3470 15149 1.982073 GCTTGTACCACATCGCAGGC 61.982 60.000 0.00 0.00 0.00 4.85
3560 15255 7.815840 TGGTCAGATTTACATGAAAGTTTCA 57.184 32.000 20.14 20.14 45.01 2.69
3639 15385 5.185635 AGCTAATTTTGCCTGTTCTTATGCA 59.814 36.000 0.00 0.00 0.00 3.96
3744 15516 0.038251 TCAGCCTGACTGCTTACACG 60.038 55.000 0.00 0.00 46.76 4.49
3825 15599 3.515630 TCTCATCATGTTGCTCGTCTTC 58.484 45.455 0.00 0.00 0.00 2.87
3858 15691 5.366477 TCAGGTCAGATGCAGTCCATTTATA 59.634 40.000 0.00 0.00 33.29 0.98
3859 15692 6.043590 TCAGGTCAGATGCAGTCCATTTATAT 59.956 38.462 0.00 0.00 33.29 0.86
4003 15856 4.222810 AGTGGCTACATTGTCTATGACACA 59.777 41.667 15.43 0.00 42.60 3.72
4248 16164 2.094182 AGTGACATGCGTCGGTTCTATT 60.094 45.455 0.00 0.00 45.80 1.73
4268 16189 3.953712 TGATGGTAGATGTGACGTTGT 57.046 42.857 0.00 0.00 0.00 3.32
4322 16279 0.519175 GTGCTGCTGCGTTTACGATG 60.519 55.000 11.21 0.00 43.34 3.84
4445 16454 1.888172 CCGTGCGTGTGGGTAACAA 60.888 57.895 0.00 0.00 41.57 2.83
4545 16564 6.703319 TCATCCGGTTAAACTTGATGTTAGA 58.297 36.000 15.42 0.00 38.03 2.10
4576 16595 0.909610 AGGAATGAGCGGGTGAAGGA 60.910 55.000 0.00 0.00 0.00 3.36
4580 16599 1.794714 ATGAGCGGGTGAAGGAGTAT 58.205 50.000 0.00 0.00 0.00 2.12
4583 16602 1.207329 GAGCGGGTGAAGGAGTATGTT 59.793 52.381 0.00 0.00 0.00 2.71
4585 16604 2.012051 GCGGGTGAAGGAGTATGTTGG 61.012 57.143 0.00 0.00 0.00 3.77
4596 16615 3.318006 TATGTTGGGCCCGTCGGTG 62.318 63.158 19.37 2.85 0.00 4.94
4608 16627 1.302511 GTCGGTGAGCCCATGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
4847 16868 7.806409 TTGATCACATAAGGTTACATGGATG 57.194 36.000 0.00 0.00 0.00 3.51
4981 17003 1.469940 CGTTAGTGCGAGAGGCTTCAT 60.470 52.381 0.00 0.00 44.05 2.57
5116 17141 8.908678 TGTAGTTATATAGATTTTAAGCGCGTG 58.091 33.333 8.43 0.00 0.00 5.34
5117 17142 6.818416 AGTTATATAGATTTTAAGCGCGTGC 58.182 36.000 14.39 14.39 43.24 5.34
5118 17143 6.422701 AGTTATATAGATTTTAAGCGCGTGCA 59.577 34.615 24.79 1.26 46.23 4.57
5119 17144 5.862924 ATATAGATTTTAAGCGCGTGCAT 57.137 34.783 24.79 14.65 46.23 3.96
5120 17145 2.178474 AGATTTTAAGCGCGTGCATG 57.822 45.000 24.79 0.09 46.23 4.06
5121 17146 1.737236 AGATTTTAAGCGCGTGCATGA 59.263 42.857 24.79 4.88 46.23 3.07
5122 17147 2.355756 AGATTTTAAGCGCGTGCATGAT 59.644 40.909 24.79 9.22 46.23 2.45
5123 17148 2.172593 TTTTAAGCGCGTGCATGATC 57.827 45.000 24.79 0.00 46.23 2.92
5125 17150 1.082690 TTAAGCGCGTGCATGATCAA 58.917 45.000 24.79 0.00 46.23 2.57
5126 17151 0.652071 TAAGCGCGTGCATGATCAAG 59.348 50.000 24.79 0.00 46.23 3.02
5168 17193 4.164981 AGGTGTAGGTGGTCTGAATGTTA 58.835 43.478 0.00 0.00 0.00 2.41
5169 17194 4.595781 AGGTGTAGGTGGTCTGAATGTTAA 59.404 41.667 0.00 0.00 0.00 2.01
5183 17208 6.043938 TCTGAATGTTAACAACTAAGAGGGGT 59.956 38.462 13.23 0.00 0.00 4.95
5196 17221 6.875469 ACTAAGAGGGGTATGGATCTATTCA 58.125 40.000 0.00 0.00 0.00 2.57
5199 17224 7.741554 AAGAGGGGTATGGATCTATTCATAC 57.258 40.000 11.50 11.50 42.79 2.39
5201 17226 8.188501 AGAGGGGTATGGATCTATTCATACTA 57.811 38.462 17.13 0.00 42.97 1.82
5202 17227 8.806630 AGAGGGGTATGGATCTATTCATACTAT 58.193 37.037 17.13 7.09 42.97 2.12
5245 17275 7.797121 ATTTTGGTTAAGTGAGGGATCAAAT 57.203 32.000 0.00 0.00 0.00 2.32
5279 17309 8.616076 CAACTTTATTTGATGGTAGCTTAGGAG 58.384 37.037 0.00 0.00 0.00 3.69
5291 17321 8.777578 TGGTAGCTTAGGAGTAGAAATATGAA 57.222 34.615 0.00 0.00 0.00 2.57
5337 17367 2.492019 GCATTAATTGCGTCTTCCCC 57.508 50.000 0.00 0.00 42.54 4.81
5338 17368 1.748493 GCATTAATTGCGTCTTCCCCA 59.252 47.619 0.00 0.00 42.54 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 2.442272 GCGAGCCTGAGGGTAGGA 60.442 66.667 12.62 0.00 40.42 2.94
187 188 3.541713 GGCGAGCCTGAGGGTAGG 61.542 72.222 12.62 4.99 40.95 3.18
188 189 3.541713 GGGCGAGCCTGAGGGTAG 61.542 72.222 14.33 4.45 31.55 3.18
189 190 4.075793 AGGGCGAGCCTGAGGGTA 62.076 66.667 14.33 0.00 31.55 3.69
202 203 2.125326 GGATTAAACCGCCCAGGGC 61.125 63.158 22.33 22.33 46.96 5.19
203 204 0.465642 GAGGATTAAACCGCCCAGGG 60.466 60.000 0.00 0.00 46.96 4.45
204 205 0.465642 GGAGGATTAAACCGCCCAGG 60.466 60.000 12.81 0.00 42.68 4.45
205 206 0.814010 CGGAGGATTAAACCGCCCAG 60.814 60.000 17.11 2.56 45.03 4.45
207 208 4.136250 CGGAGGATTAAACCGCCC 57.864 61.111 17.11 11.35 45.03 6.13
211 212 2.711978 AAGGAGCGGAGGATTAAACC 57.288 50.000 0.00 0.00 0.00 3.27
213 214 3.134081 CAGGTAAGGAGCGGAGGATTAAA 59.866 47.826 0.00 0.00 0.00 1.52
214 215 2.698797 CAGGTAAGGAGCGGAGGATTAA 59.301 50.000 0.00 0.00 0.00 1.40
215 216 2.317040 CAGGTAAGGAGCGGAGGATTA 58.683 52.381 0.00 0.00 0.00 1.75
216 217 1.123928 CAGGTAAGGAGCGGAGGATT 58.876 55.000 0.00 0.00 0.00 3.01
217 218 0.032017 ACAGGTAAGGAGCGGAGGAT 60.032 55.000 0.00 0.00 0.00 3.24
218 219 0.252103 AACAGGTAAGGAGCGGAGGA 60.252 55.000 0.00 0.00 0.00 3.71
219 220 0.108138 CAACAGGTAAGGAGCGGAGG 60.108 60.000 0.00 0.00 0.00 4.30
220 221 0.608640 ACAACAGGTAAGGAGCGGAG 59.391 55.000 0.00 0.00 0.00 4.63
221 222 1.927487 TACAACAGGTAAGGAGCGGA 58.073 50.000 0.00 0.00 0.00 5.54
222 223 2.344025 GTTACAACAGGTAAGGAGCGG 58.656 52.381 0.00 0.00 42.44 5.52
224 225 3.335579 CTGGTTACAACAGGTAAGGAGC 58.664 50.000 0.00 0.00 42.44 4.70
233 234 1.790623 CGAACGACCTGGTTACAACAG 59.209 52.381 0.00 0.00 35.74 3.16
234 235 1.136695 ACGAACGACCTGGTTACAACA 59.863 47.619 0.00 0.00 0.00 3.33
235 236 1.523934 CACGAACGACCTGGTTACAAC 59.476 52.381 0.00 0.00 0.00 3.32
239 240 0.032403 CACCACGAACGACCTGGTTA 59.968 55.000 0.00 0.00 36.14 2.85
240 241 1.227438 CACCACGAACGACCTGGTT 60.227 57.895 0.00 0.00 36.14 3.67
241 242 2.359570 GACACCACGAACGACCTGGT 62.360 60.000 0.00 0.00 38.17 4.00
243 244 2.014554 CGACACCACGAACGACCTG 61.015 63.158 0.14 0.00 35.09 4.00
244 245 2.333938 CGACACCACGAACGACCT 59.666 61.111 0.14 0.00 35.09 3.85
245 246 2.732094 CCGACACCACGAACGACC 60.732 66.667 0.14 0.00 35.09 4.79
247 248 2.332514 GACCGACACCACGAACGA 59.667 61.111 0.14 0.00 35.09 3.85
248 249 3.095278 CGACCGACACCACGAACG 61.095 66.667 0.00 0.00 35.09 3.95
249 250 3.400590 GCGACCGACACCACGAAC 61.401 66.667 0.00 0.00 35.09 3.95
250 251 4.651008 GGCGACCGACACCACGAA 62.651 66.667 0.00 0.00 35.09 3.85
262 263 1.209127 CATCGGTTTGTTGGGCGAC 59.791 57.895 0.00 0.00 0.00 5.19
263 264 2.622011 GCATCGGTTTGTTGGGCGA 61.622 57.895 0.00 0.00 0.00 5.54
264 265 2.126502 GCATCGGTTTGTTGGGCG 60.127 61.111 0.00 0.00 0.00 6.13
265 266 2.261361 GGCATCGGTTTGTTGGGC 59.739 61.111 0.00 0.00 0.00 5.36
266 267 0.322997 TAGGGCATCGGTTTGTTGGG 60.323 55.000 0.00 0.00 0.00 4.12
269 270 2.159382 CTGTTAGGGCATCGGTTTGTT 58.841 47.619 0.00 0.00 0.00 2.83
270 271 1.073284 ACTGTTAGGGCATCGGTTTGT 59.927 47.619 0.00 0.00 0.00 2.83
272 273 3.926058 ATACTGTTAGGGCATCGGTTT 57.074 42.857 0.00 0.00 0.00 3.27
273 274 3.433173 GGAATACTGTTAGGGCATCGGTT 60.433 47.826 0.00 0.00 0.00 4.44
274 275 2.104281 GGAATACTGTTAGGGCATCGGT 59.896 50.000 0.00 0.00 0.00 4.69
275 276 2.550208 GGGAATACTGTTAGGGCATCGG 60.550 54.545 0.00 0.00 0.00 4.18
276 277 2.767505 GGGAATACTGTTAGGGCATCG 58.232 52.381 0.00 0.00 0.00 3.84
277 278 2.767505 CGGGAATACTGTTAGGGCATC 58.232 52.381 0.00 0.00 0.00 3.91
278 279 1.202770 GCGGGAATACTGTTAGGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
279 280 0.179468 GCGGGAATACTGTTAGGGCA 59.821 55.000 0.00 0.00 0.00 5.36
280 281 0.179468 TGCGGGAATACTGTTAGGGC 59.821 55.000 0.00 0.00 0.00 5.19
281 282 1.485066 AGTGCGGGAATACTGTTAGGG 59.515 52.381 0.00 0.00 0.00 3.53
282 283 2.167693 TGAGTGCGGGAATACTGTTAGG 59.832 50.000 0.00 0.00 0.00 2.69
283 284 3.520290 TGAGTGCGGGAATACTGTTAG 57.480 47.619 0.00 0.00 0.00 2.34
284 285 3.490249 CGATGAGTGCGGGAATACTGTTA 60.490 47.826 0.00 0.00 0.00 2.41
285 286 2.738643 CGATGAGTGCGGGAATACTGTT 60.739 50.000 0.00 0.00 0.00 3.16
286 287 1.202417 CGATGAGTGCGGGAATACTGT 60.202 52.381 0.00 0.00 0.00 3.55
287 288 1.202417 ACGATGAGTGCGGGAATACTG 60.202 52.381 0.00 0.00 0.00 2.74
289 290 1.859080 GAACGATGAGTGCGGGAATAC 59.141 52.381 0.00 0.00 0.00 1.89
290 291 1.202486 GGAACGATGAGTGCGGGAATA 60.202 52.381 0.00 0.00 0.00 1.75
291 292 0.462047 GGAACGATGAGTGCGGGAAT 60.462 55.000 0.00 0.00 0.00 3.01
300 301 5.218521 TCTGGACAGAACGGAACGATGAG 62.219 52.174 0.00 0.00 45.55 2.90
301 302 3.397349 TCTGGACAGAACGGAACGATGA 61.397 50.000 0.00 0.00 45.55 2.92
302 303 1.067846 TCTGGACAGAACGGAACGATG 60.068 52.381 0.00 0.00 45.55 3.84
304 305 2.723231 TCTGGACAGAACGGAACGA 58.277 52.632 0.00 0.00 45.55 3.85
306 307 0.666577 CCGTCTGGACAGAACGGAAC 60.667 60.000 25.34 6.90 45.83 3.62
308 309 2.927580 GCCGTCTGGACAGAACGGA 61.928 63.158 29.75 1.91 45.83 4.69
309 310 2.432628 GCCGTCTGGACAGAACGG 60.433 66.667 25.27 25.27 45.77 4.44
310 311 2.432628 GGCCGTCTGGACAGAACG 60.433 66.667 3.18 9.78 45.78 3.95
316 317 4.329545 TTGCTGGGCCGTCTGGAC 62.330 66.667 0.00 0.00 45.75 4.02
317 318 4.329545 GTTGCTGGGCCGTCTGGA 62.330 66.667 0.00 0.00 37.49 3.86
318 319 3.925630 ATGTTGCTGGGCCGTCTGG 62.926 63.158 0.00 0.00 38.77 3.86
319 320 2.360350 ATGTTGCTGGGCCGTCTG 60.360 61.111 0.00 0.00 0.00 3.51
320 321 2.045926 GATGTTGCTGGGCCGTCT 60.046 61.111 0.00 0.00 0.00 4.18
321 322 2.359850 TGATGTTGCTGGGCCGTC 60.360 61.111 0.00 0.00 0.00 4.79
322 323 2.360350 CTGATGTTGCTGGGCCGT 60.360 61.111 0.00 0.00 0.00 5.68
323 324 2.360350 ACTGATGTTGCTGGGCCG 60.360 61.111 0.00 0.00 0.00 6.13
324 325 1.001641 AGACTGATGTTGCTGGGCC 60.002 57.895 0.00 0.00 0.00 5.80
325 326 1.364626 CGAGACTGATGTTGCTGGGC 61.365 60.000 0.00 0.00 0.00 5.36
326 327 0.036952 ACGAGACTGATGTTGCTGGG 60.037 55.000 0.00 0.00 0.00 4.45
327 328 1.462283 CAACGAGACTGATGTTGCTGG 59.538 52.381 0.00 0.00 36.87 4.85
328 329 2.407090 TCAACGAGACTGATGTTGCTG 58.593 47.619 0.00 0.00 42.00 4.41
329 330 2.820059 TCAACGAGACTGATGTTGCT 57.180 45.000 0.00 0.00 42.00 3.91
330 331 3.740590 CAATCAACGAGACTGATGTTGC 58.259 45.455 0.00 0.00 42.00 4.17
331 332 3.187022 TGCAATCAACGAGACTGATGTTG 59.813 43.478 0.00 5.77 43.26 3.33
333 334 3.044235 TGCAATCAACGAGACTGATGT 57.956 42.857 0.00 0.00 33.76 3.06
334 335 4.193021 GATGCAATCAACGAGACTGATG 57.807 45.455 0.00 0.00 44.70 3.07
347 348 4.082895 GGCATGATAGAAGGTGATGCAATC 60.083 45.833 0.00 0.00 45.83 2.67
349 350 3.216800 GGCATGATAGAAGGTGATGCAA 58.783 45.455 0.00 0.00 41.00 4.08
350 351 2.173143 TGGCATGATAGAAGGTGATGCA 59.827 45.455 0.00 0.00 41.00 3.96
351 352 2.854963 TGGCATGATAGAAGGTGATGC 58.145 47.619 0.00 0.00 38.96 3.91
352 353 4.217767 CCATTGGCATGATAGAAGGTGATG 59.782 45.833 0.00 0.00 31.07 3.07
353 354 4.404640 CCATTGGCATGATAGAAGGTGAT 58.595 43.478 0.00 0.00 31.07 3.06
354 355 3.824133 CCATTGGCATGATAGAAGGTGA 58.176 45.455 0.00 0.00 31.07 4.02
369 370 1.466025 CCCGATTCATGGGCCATTGG 61.466 60.000 18.46 10.39 40.47 3.16
370 371 1.466025 CCCCGATTCATGGGCCATTG 61.466 60.000 18.46 12.71 45.95 2.82
371 372 1.152483 CCCCGATTCATGGGCCATT 60.152 57.895 18.46 1.62 45.95 3.16
373 374 3.020647 ACCCCGATTCATGGGCCA 61.021 61.111 9.61 9.61 46.43 5.36
374 375 2.519302 CACCCCGATTCATGGGCC 60.519 66.667 0.00 0.00 46.43 5.80
375 376 1.077068 TTCACCCCGATTCATGGGC 60.077 57.895 7.94 0.00 46.43 5.36
377 378 1.745087 CAACTTCACCCCGATTCATGG 59.255 52.381 0.00 0.00 0.00 3.66
378 379 2.162208 CACAACTTCACCCCGATTCATG 59.838 50.000 0.00 0.00 0.00 3.07
380 381 1.544537 CCACAACTTCACCCCGATTCA 60.545 52.381 0.00 0.00 0.00 2.57
381 382 1.165270 CCACAACTTCACCCCGATTC 58.835 55.000 0.00 0.00 0.00 2.52
382 383 0.768622 TCCACAACTTCACCCCGATT 59.231 50.000 0.00 0.00 0.00 3.34
384 385 0.768622 ATTCCACAACTTCACCCCGA 59.231 50.000 0.00 0.00 0.00 5.14
385 386 1.616159 AATTCCACAACTTCACCCCG 58.384 50.000 0.00 0.00 0.00 5.73
386 387 3.386402 TCAAAATTCCACAACTTCACCCC 59.614 43.478 0.00 0.00 0.00 4.95
387 388 4.142049 TGTCAAAATTCCACAACTTCACCC 60.142 41.667 0.00 0.00 0.00 4.61
388 389 4.803613 GTGTCAAAATTCCACAACTTCACC 59.196 41.667 0.00 0.00 0.00 4.02
392 393 5.413309 TTGGTGTCAAAATTCCACAACTT 57.587 34.783 0.00 0.00 0.00 2.66
393 394 5.128499 TGATTGGTGTCAAAATTCCACAACT 59.872 36.000 0.00 0.00 36.36 3.16
395 396 5.599732 CTGATTGGTGTCAAAATTCCACAA 58.400 37.500 0.00 0.00 36.36 3.33
397 398 3.989817 GCTGATTGGTGTCAAAATTCCAC 59.010 43.478 0.00 0.00 36.36 4.02
400 401 3.676646 GCAGCTGATTGGTGTCAAAATTC 59.323 43.478 20.43 0.00 45.23 2.17
401 402 3.069872 TGCAGCTGATTGGTGTCAAAATT 59.930 39.130 20.43 0.00 45.23 1.82
402 403 2.629137 TGCAGCTGATTGGTGTCAAAAT 59.371 40.909 20.43 0.00 45.23 1.82
405 406 1.913778 ATGCAGCTGATTGGTGTCAA 58.086 45.000 20.43 0.00 45.23 3.18
406 407 1.814394 GAATGCAGCTGATTGGTGTCA 59.186 47.619 20.43 3.02 45.23 3.58
408 409 1.913778 TGAATGCAGCTGATTGGTGT 58.086 45.000 20.43 0.00 45.23 4.16
410 411 3.159472 TCTTTGAATGCAGCTGATTGGT 58.841 40.909 20.43 0.00 0.00 3.67
411 412 3.192844 ACTCTTTGAATGCAGCTGATTGG 59.807 43.478 20.43 5.09 0.00 3.16
414 415 2.163815 GCACTCTTTGAATGCAGCTGAT 59.836 45.455 20.43 5.31 39.23 2.90
416 417 1.728179 CGCACTCTTTGAATGCAGCTG 60.728 52.381 10.11 10.11 39.39 4.24
418 419 0.239347 ACGCACTCTTTGAATGCAGC 59.761 50.000 2.13 0.00 39.39 5.25
419 420 1.532437 TCACGCACTCTTTGAATGCAG 59.468 47.619 2.13 0.00 39.39 4.41
422 423 5.674148 CGATATTTCACGCACTCTTTGAATG 59.326 40.000 0.00 0.00 0.00 2.67
423 424 5.351465 ACGATATTTCACGCACTCTTTGAAT 59.649 36.000 0.00 0.00 0.00 2.57
424 425 4.688879 ACGATATTTCACGCACTCTTTGAA 59.311 37.500 0.00 0.00 0.00 2.69
425 426 4.242475 ACGATATTTCACGCACTCTTTGA 58.758 39.130 0.00 0.00 0.00 2.69
426 427 4.584029 ACGATATTTCACGCACTCTTTG 57.416 40.909 0.00 0.00 0.00 2.77
427 428 5.390567 GGAAACGATATTTCACGCACTCTTT 60.391 40.000 0.00 0.00 0.00 2.52
429 430 3.617263 GGAAACGATATTTCACGCACTCT 59.383 43.478 0.00 0.00 0.00 3.24
430 431 3.617263 AGGAAACGATATTTCACGCACTC 59.383 43.478 0.00 0.00 0.00 3.51
431 432 3.370978 CAGGAAACGATATTTCACGCACT 59.629 43.478 0.00 0.00 0.00 4.40
432 433 3.369756 TCAGGAAACGATATTTCACGCAC 59.630 43.478 0.00 0.00 0.00 5.34
433 434 3.591023 TCAGGAAACGATATTTCACGCA 58.409 40.909 0.00 0.00 0.00 5.24
435 436 3.001330 GCCTCAGGAAACGATATTTCACG 59.999 47.826 0.00 0.00 0.00 4.35
436 437 3.312697 GGCCTCAGGAAACGATATTTCAC 59.687 47.826 0.00 0.00 0.00 3.18
438 439 3.312697 GTGGCCTCAGGAAACGATATTTC 59.687 47.826 3.32 0.00 0.00 2.17
439 440 3.279434 GTGGCCTCAGGAAACGATATTT 58.721 45.455 3.32 0.00 0.00 1.40
442 443 1.207089 CTGTGGCCTCAGGAAACGATA 59.793 52.381 24.35 0.00 0.00 2.92
443 444 0.036010 CTGTGGCCTCAGGAAACGAT 60.036 55.000 24.35 0.00 0.00 3.73
444 445 1.371183 CTGTGGCCTCAGGAAACGA 59.629 57.895 24.35 0.00 0.00 3.85
446 447 0.606673 GGACTGTGGCCTCAGGAAAC 60.607 60.000 32.32 21.15 39.48 2.78
447 448 0.768221 AGGACTGTGGCCTCAGGAAA 60.768 55.000 32.32 0.83 39.48 3.13
448 449 1.152030 AGGACTGTGGCCTCAGGAA 60.152 57.895 32.32 1.20 39.48 3.36
449 450 2.533435 AGGACTGTGGCCTCAGGA 59.467 61.111 32.32 0.00 39.48 3.86
453 454 3.655810 CTGCGAGGACTGTGGCCTC 62.656 68.421 9.33 9.33 46.74 4.70
454 455 3.699894 CTGCGAGGACTGTGGCCT 61.700 66.667 3.32 0.00 38.81 5.19
456 457 0.674895 ATTTCTGCGAGGACTGTGGC 60.675 55.000 0.00 0.00 0.00 5.01
457 458 1.363744 GATTTCTGCGAGGACTGTGG 58.636 55.000 0.00 0.00 0.00 4.17
459 460 0.888619 TCGATTTCTGCGAGGACTGT 59.111 50.000 0.00 0.00 33.33 3.55
462 463 2.034053 AGAGATCGATTTCTGCGAGGAC 59.966 50.000 17.04 0.00 41.49 3.85
464 465 2.791383 AGAGATCGATTTCTGCGAGG 57.209 50.000 17.04 0.00 41.49 4.63
465 466 3.049206 GGAAGAGATCGATTTCTGCGAG 58.951 50.000 18.31 0.00 41.49 5.03
467 468 2.131183 GGGAAGAGATCGATTTCTGCG 58.869 52.381 18.31 0.00 0.00 5.18
468 469 3.467374 AGGGAAGAGATCGATTTCTGC 57.533 47.619 18.31 16.29 0.00 4.26
470 471 4.020662 GCCATAGGGAAGAGATCGATTTCT 60.021 45.833 12.47 12.47 35.59 2.52
472 473 3.306364 CGCCATAGGGAAGAGATCGATTT 60.306 47.826 0.00 0.00 35.59 2.17
473 474 2.232452 CGCCATAGGGAAGAGATCGATT 59.768 50.000 0.00 0.00 35.59 3.34
474 475 1.821753 CGCCATAGGGAAGAGATCGAT 59.178 52.381 0.00 0.00 35.59 3.59
475 476 1.248486 CGCCATAGGGAAGAGATCGA 58.752 55.000 0.00 0.00 35.59 3.59
476 477 0.962489 ACGCCATAGGGAAGAGATCG 59.038 55.000 0.00 0.00 35.59 3.69
478 479 2.683768 AGAACGCCATAGGGAAGAGAT 58.316 47.619 0.00 0.00 35.59 2.75
479 480 2.160721 AGAACGCCATAGGGAAGAGA 57.839 50.000 0.00 0.00 35.59 3.10
480 481 2.799917 CGAAGAACGCCATAGGGAAGAG 60.800 54.545 0.00 0.00 35.59 2.85
481 482 1.136305 CGAAGAACGCCATAGGGAAGA 59.864 52.381 0.00 0.00 35.59 2.87
482 483 1.136305 TCGAAGAACGCCATAGGGAAG 59.864 52.381 0.00 0.00 42.26 3.46
483 484 1.136305 CTCGAAGAACGCCATAGGGAA 59.864 52.381 0.00 0.00 42.26 3.97
484 485 0.744874 CTCGAAGAACGCCATAGGGA 59.255 55.000 0.00 0.00 42.26 4.20
485 486 0.249489 CCTCGAAGAACGCCATAGGG 60.249 60.000 0.00 0.00 42.26 3.53
486 487 0.744874 TCCTCGAAGAACGCCATAGG 59.255 55.000 0.00 0.00 42.26 2.57
487 488 2.667137 GATCCTCGAAGAACGCCATAG 58.333 52.381 0.00 0.00 42.26 2.23
488 489 1.001706 CGATCCTCGAAGAACGCCATA 60.002 52.381 0.55 0.00 43.74 2.74
489 490 0.249073 CGATCCTCGAAGAACGCCAT 60.249 55.000 0.55 0.00 43.74 4.40
490 491 1.138883 CGATCCTCGAAGAACGCCA 59.861 57.895 0.55 0.00 43.74 5.69
491 492 1.589196 CCGATCCTCGAAGAACGCC 60.589 63.158 8.07 0.00 43.74 5.68
492 493 0.458025 AACCGATCCTCGAAGAACGC 60.458 55.000 8.07 0.00 43.74 4.84
495 496 3.243941 TGTTCAAACCGATCCTCGAAGAA 60.244 43.478 0.00 0.00 43.74 2.52
497 498 2.412089 GTGTTCAAACCGATCCTCGAAG 59.588 50.000 0.00 0.00 43.74 3.79
498 499 2.409975 GTGTTCAAACCGATCCTCGAA 58.590 47.619 0.00 0.00 43.74 3.71
499 500 1.337447 GGTGTTCAAACCGATCCTCGA 60.337 52.381 0.00 0.00 43.74 4.04
500 501 1.076332 GGTGTTCAAACCGATCCTCG 58.924 55.000 0.00 0.00 40.07 4.63
502 503 1.697432 TGAGGTGTTCAAACCGATCCT 59.303 47.619 0.00 0.00 45.53 3.24
503 504 2.076863 CTGAGGTGTTCAAACCGATCC 58.923 52.381 0.00 0.00 45.53 3.36
504 505 2.767505 ACTGAGGTGTTCAAACCGATC 58.232 47.619 0.00 0.00 45.53 3.69
505 506 2.878406 CAACTGAGGTGTTCAAACCGAT 59.122 45.455 0.00 0.00 45.53 4.18
506 507 2.093394 TCAACTGAGGTGTTCAAACCGA 60.093 45.455 0.00 0.00 45.53 4.69
507 508 2.285083 TCAACTGAGGTGTTCAAACCG 58.715 47.619 0.00 0.00 45.53 4.44
508 509 3.181490 GGTTCAACTGAGGTGTTCAAACC 60.181 47.826 3.47 3.47 40.85 3.27
509 510 3.694566 AGGTTCAACTGAGGTGTTCAAAC 59.305 43.478 0.00 0.00 34.81 2.93
510 511 3.945285 GAGGTTCAACTGAGGTGTTCAAA 59.055 43.478 0.00 0.00 34.81 2.69
511 512 3.054728 TGAGGTTCAACTGAGGTGTTCAA 60.055 43.478 0.00 0.00 34.81 2.69
512 513 2.503765 TGAGGTTCAACTGAGGTGTTCA 59.496 45.455 0.00 0.00 0.00 3.18
513 514 2.872858 GTGAGGTTCAACTGAGGTGTTC 59.127 50.000 0.00 0.00 0.00 3.18
515 516 1.837439 TGTGAGGTTCAACTGAGGTGT 59.163 47.619 0.00 0.00 0.00 4.16
516 517 2.620251 TGTGAGGTTCAACTGAGGTG 57.380 50.000 0.00 0.00 0.00 4.00
518 519 2.224621 ACCATGTGAGGTTCAACTGAGG 60.225 50.000 0.00 0.00 39.34 3.86
519 520 3.131709 ACCATGTGAGGTTCAACTGAG 57.868 47.619 0.00 0.00 39.34 3.35
528 529 3.328535 AAAGGGAAAACCATGTGAGGT 57.671 42.857 0.00 0.00 45.91 3.85
529 530 5.799827 TTTAAAGGGAAAACCATGTGAGG 57.200 39.130 0.00 0.00 43.89 3.86
553 554 7.595819 TGTTCACATGGGAACTAGAATTTTT 57.404 32.000 34.36 0.00 45.74 1.94
554 555 7.255942 CCTTGTTCACATGGGAACTAGAATTTT 60.256 37.037 37.67 0.00 46.54 1.82
555 556 6.209391 CCTTGTTCACATGGGAACTAGAATTT 59.791 38.462 37.67 0.00 46.54 1.82
556 557 5.711976 CCTTGTTCACATGGGAACTAGAATT 59.288 40.000 37.67 0.00 46.54 2.17
557 558 5.014123 TCCTTGTTCACATGGGAACTAGAAT 59.986 40.000 37.67 0.00 46.54 2.40
558 559 4.349636 TCCTTGTTCACATGGGAACTAGAA 59.650 41.667 37.67 25.28 46.54 2.10
559 560 3.907474 TCCTTGTTCACATGGGAACTAGA 59.093 43.478 37.67 28.00 46.54 2.43
560 561 4.256920 CTCCTTGTTCACATGGGAACTAG 58.743 47.826 32.62 32.62 45.74 2.57
561 562 3.559171 GCTCCTTGTTCACATGGGAACTA 60.559 47.826 34.36 27.87 45.74 2.24
563 564 1.541588 GCTCCTTGTTCACATGGGAAC 59.458 52.381 30.07 30.07 45.75 3.62
564 565 1.425066 AGCTCCTTGTTCACATGGGAA 59.575 47.619 6.21 6.21 40.45 3.97
566 567 1.457346 GAGCTCCTTGTTCACATGGG 58.543 55.000 0.87 0.00 40.45 4.00
567 568 1.004044 AGGAGCTCCTTGTTCACATGG 59.996 52.381 30.40 5.66 46.09 3.66
568 569 2.486472 AGGAGCTCCTTGTTCACATG 57.514 50.000 30.40 0.00 46.09 3.21
569 570 4.640771 TTTAGGAGCTCCTTGTTCACAT 57.359 40.909 39.23 15.39 46.09 3.21
571 572 4.134563 TGTTTTAGGAGCTCCTTGTTCAC 58.865 43.478 39.23 26.02 46.09 3.18
572 573 4.431416 TGTTTTAGGAGCTCCTTGTTCA 57.569 40.909 39.23 27.32 46.09 3.18
573 574 5.767816 TTTGTTTTAGGAGCTCCTTGTTC 57.232 39.130 39.23 25.34 46.09 3.18
574 575 6.731292 ATTTTGTTTTAGGAGCTCCTTGTT 57.269 33.333 39.23 18.89 46.09 2.83
575 576 7.669722 TGATATTTTGTTTTAGGAGCTCCTTGT 59.330 33.333 39.23 19.29 46.09 3.16
576 577 8.055279 TGATATTTTGTTTTAGGAGCTCCTTG 57.945 34.615 39.23 0.00 46.09 3.61
577 578 7.340487 CCTGATATTTTGTTTTAGGAGCTCCTT 59.660 37.037 39.23 22.98 46.09 3.36
579 580 6.828785 TCCTGATATTTTGTTTTAGGAGCTCC 59.171 38.462 26.22 26.22 0.00 4.70
580 581 7.865706 TCCTGATATTTTGTTTTAGGAGCTC 57.134 36.000 4.71 4.71 0.00 4.09
581 582 7.669722 TGTTCCTGATATTTTGTTTTAGGAGCT 59.330 33.333 0.00 0.00 35.78 4.09
608 609 2.289882 GGCGTAGGGGACTAGTGTTTTT 60.290 50.000 0.00 0.00 45.49 1.94
610 611 0.900421 GGCGTAGGGGACTAGTGTTT 59.100 55.000 0.00 0.00 45.49 2.83
612 613 0.921896 TAGGCGTAGGGGACTAGTGT 59.078 55.000 0.00 0.00 45.49 3.55
613 614 1.316651 GTAGGCGTAGGGGACTAGTG 58.683 60.000 0.00 0.00 45.49 2.74
615 616 1.513836 GCGTAGGCGTAGGGGACTAG 61.514 65.000 8.09 0.00 45.49 2.57
616 617 1.526917 GCGTAGGCGTAGGGGACTA 60.527 63.158 8.09 0.00 38.85 2.59
617 618 2.832201 GCGTAGGCGTAGGGGACT 60.832 66.667 8.09 0.00 41.00 3.85
618 619 2.496291 ATGCGTAGGCGTAGGGGAC 61.496 63.158 0.00 0.00 44.10 4.46
620 621 2.029073 CATGCGTAGGCGTAGGGG 59.971 66.667 1.06 0.00 44.10 4.79
622 623 1.299926 GTCCATGCGTAGGCGTAGG 60.300 63.158 1.06 6.76 44.10 3.18
623 624 1.299926 GGTCCATGCGTAGGCGTAG 60.300 63.158 1.06 0.00 44.10 3.51
624 625 2.809706 GGTCCATGCGTAGGCGTA 59.190 61.111 1.06 0.00 44.10 4.42
625 626 4.508128 CGGTCCATGCGTAGGCGT 62.508 66.667 2.53 0.00 44.10 5.68
626 627 4.508128 ACGGTCCATGCGTAGGCG 62.508 66.667 2.53 0.00 44.10 5.52
627 628 2.890474 CACGGTCCATGCGTAGGC 60.890 66.667 0.00 0.00 40.52 3.93
633 634 3.104766 CATGAGCACGGTCCATGC 58.895 61.111 0.40 0.40 43.74 4.06
700 701 0.524816 TAAACGAGACGAGATGGCGC 60.525 55.000 0.00 0.00 33.86 6.53
713 714 3.666111 CGGCGAGACGATGATATAAACGA 60.666 47.826 0.00 0.00 35.47 3.85
714 715 2.588539 CGGCGAGACGATGATATAAACG 59.411 50.000 0.00 0.00 35.47 3.60
715 716 2.341760 GCGGCGAGACGATGATATAAAC 59.658 50.000 12.98 0.00 35.47 2.01
716 717 2.592194 GCGGCGAGACGATGATATAAA 58.408 47.619 12.98 0.00 35.47 1.40
717 718 1.465187 CGCGGCGAGACGATGATATAA 60.465 52.381 19.16 0.00 35.47 0.98
718 719 0.096454 CGCGGCGAGACGATGATATA 59.904 55.000 19.16 0.00 35.47 0.86
719 720 1.154207 CGCGGCGAGACGATGATAT 60.154 57.895 19.16 0.00 35.47 1.63
720 721 1.223417 TACGCGGCGAGACGATGATA 61.223 55.000 30.94 4.29 35.47 2.15
723 724 3.017314 GTACGCGGCGAGACGATG 61.017 66.667 30.94 0.00 35.47 3.84
743 744 0.175989 GACGTTGGTTGGGGCAAAAA 59.824 50.000 0.00 0.00 0.00 1.94
744 745 1.677637 GGACGTTGGTTGGGGCAAAA 61.678 55.000 0.00 0.00 0.00 2.44
745 746 2.128507 GGACGTTGGTTGGGGCAAA 61.129 57.895 0.00 0.00 0.00 3.68
747 748 4.589675 GGGACGTTGGTTGGGGCA 62.590 66.667 0.00 0.00 0.00 5.36
748 749 4.280019 AGGGACGTTGGTTGGGGC 62.280 66.667 0.00 0.00 0.00 5.80
749 750 2.033602 GAGGGACGTTGGTTGGGG 59.966 66.667 0.00 0.00 0.00 4.96
751 752 0.037232 GAGAGAGGGACGTTGGTTGG 60.037 60.000 0.00 0.00 0.00 3.77
752 753 0.037232 GGAGAGAGGGACGTTGGTTG 60.037 60.000 0.00 0.00 0.00 3.77
754 755 1.155390 TGGAGAGAGGGACGTTGGT 59.845 57.895 0.00 0.00 0.00 3.67
756 757 1.185618 TGGTGGAGAGAGGGACGTTG 61.186 60.000 0.00 0.00 0.00 4.10
757 758 0.471211 TTGGTGGAGAGAGGGACGTT 60.471 55.000 0.00 0.00 0.00 3.99
758 759 0.252284 ATTGGTGGAGAGAGGGACGT 60.252 55.000 0.00 0.00 0.00 4.34
759 760 0.461961 GATTGGTGGAGAGAGGGACG 59.538 60.000 0.00 0.00 0.00 4.79
760 761 0.833949 GGATTGGTGGAGAGAGGGAC 59.166 60.000 0.00 0.00 0.00 4.46
762 763 1.065126 GTTGGATTGGTGGAGAGAGGG 60.065 57.143 0.00 0.00 0.00 4.30
763 764 1.406069 CGTTGGATTGGTGGAGAGAGG 60.406 57.143 0.00 0.00 0.00 3.69
764 765 1.276421 ACGTTGGATTGGTGGAGAGAG 59.724 52.381 0.00 0.00 0.00 3.20
765 766 1.348064 ACGTTGGATTGGTGGAGAGA 58.652 50.000 0.00 0.00 0.00 3.10
870 958 1.004440 GGCTCCAGTGCTCGACTTT 60.004 57.895 0.00 0.00 29.75 2.66
928 1024 2.431454 GGAGGAGCAAAAGTGGAGAAG 58.569 52.381 0.00 0.00 0.00 2.85
955 1051 2.286127 GAACGGAAGGCGAGAGGGAG 62.286 65.000 0.00 0.00 0.00 4.30
956 1052 2.283676 AACGGAAGGCGAGAGGGA 60.284 61.111 0.00 0.00 0.00 4.20
957 1053 2.184579 GAACGGAAGGCGAGAGGG 59.815 66.667 0.00 0.00 0.00 4.30
958 1054 2.184579 GGAACGGAAGGCGAGAGG 59.815 66.667 0.00 0.00 0.00 3.69
1019 1129 1.267574 ATGAGCGGCAGGGAAGAGAA 61.268 55.000 1.45 0.00 0.00 2.87
1020 1130 1.680522 GATGAGCGGCAGGGAAGAGA 61.681 60.000 1.45 0.00 0.00 3.10
1184 1327 1.220477 GGAGAAGCTGCAGGGAGAC 59.780 63.158 17.12 0.00 0.00 3.36
1492 3473 0.109365 CAGAGCAGAGTCGTGTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
1499 3489 0.798771 GGTAACGCAGAGCAGAGTCG 60.799 60.000 0.00 0.00 0.00 4.18
1650 3719 3.022406 ACCACGTCCCATTCTAGTAGTC 58.978 50.000 0.00 0.00 0.00 2.59
1651 3720 3.097342 ACCACGTCCCATTCTAGTAGT 57.903 47.619 0.00 0.00 0.00 2.73
1652 3721 3.782046 CAACCACGTCCCATTCTAGTAG 58.218 50.000 0.00 0.00 0.00 2.57
1742 3829 2.613474 GGTAGATGTACAACGGGCACAA 60.613 50.000 0.00 0.00 0.00 3.33
1901 4025 2.203401 CATAAGCAGCAGAGCAGAGTC 58.797 52.381 0.00 0.00 36.85 3.36
2042 4365 1.648720 CCAGTCCACACGCAAACAG 59.351 57.895 0.00 0.00 0.00 3.16
2311 7403 3.053896 GGACCAAACGGCCCTTCG 61.054 66.667 0.00 0.00 0.00 3.79
2469 7566 8.001875 TGCCCTTAAAATAACCTATGAAGCATA 58.998 33.333 0.00 0.00 0.00 3.14
2587 7834 2.642129 CGGCGCCAACAATCACAA 59.358 55.556 28.98 0.00 0.00 3.33
2621 7868 2.681976 GCAGCCAGAGGAATAAGAAGCA 60.682 50.000 0.00 0.00 0.00 3.91
2772 8019 1.134401 CGAGAGGGCTGAGGCAAAATA 60.134 52.381 8.68 0.00 40.87 1.40
2804 8051 8.203485 TGTATATATGTTGCTGTGAGTGAATGA 58.797 33.333 0.00 0.00 0.00 2.57
2815 8062 6.162079 CCTCCTCTGTGTATATATGTTGCTG 58.838 44.000 0.00 0.00 0.00 4.41
2816 8063 5.841237 ACCTCCTCTGTGTATATATGTTGCT 59.159 40.000 0.00 0.00 0.00 3.91
2920 8284 4.392921 AGGCTAGTTAGTGCATGTAGTG 57.607 45.455 0.79 0.00 0.00 2.74
2972 8336 1.594862 GCATGTGTTGGATCTAGTCGC 59.405 52.381 0.00 0.00 0.00 5.19
2978 8342 2.139323 AGCATGCATGTGTTGGATCT 57.861 45.000 26.79 10.60 33.53 2.75
2980 8344 3.090790 TGTTAGCATGCATGTGTTGGAT 58.909 40.909 26.79 1.85 36.74 3.41
2981 8345 2.512705 TGTTAGCATGCATGTGTTGGA 58.487 42.857 26.79 5.55 0.00 3.53
2982 8346 2.988493 GTTGTTAGCATGCATGTGTTGG 59.012 45.455 26.79 1.59 0.00 3.77
2983 8347 2.988493 GGTTGTTAGCATGCATGTGTTG 59.012 45.455 26.79 4.04 0.00 3.33
2984 8348 2.627221 TGGTTGTTAGCATGCATGTGTT 59.373 40.909 26.79 15.43 0.00 3.32
2985 8349 2.030007 GTGGTTGTTAGCATGCATGTGT 60.030 45.455 26.79 17.10 33.75 3.72
2986 8350 2.229543 AGTGGTTGTTAGCATGCATGTG 59.770 45.455 26.79 5.68 33.75 3.21
2987 8351 2.517959 AGTGGTTGTTAGCATGCATGT 58.482 42.857 26.79 16.07 33.75 3.21
2988 8352 3.691118 AGTAGTGGTTGTTAGCATGCATG 59.309 43.478 22.70 22.70 33.75 4.06
2989 8353 3.955471 AGTAGTGGTTGTTAGCATGCAT 58.045 40.909 21.98 7.68 33.75 3.96
2990 8354 3.417069 AGTAGTGGTTGTTAGCATGCA 57.583 42.857 21.98 2.77 33.75 3.96
2991 8355 4.504858 ACTAGTAGTGGTTGTTAGCATGC 58.495 43.478 10.51 10.51 33.75 4.06
2992 8356 5.163854 GCAACTAGTAGTGGTTGTTAGCATG 60.164 44.000 23.04 2.06 44.78 4.06
2993 8357 4.935808 GCAACTAGTAGTGGTTGTTAGCAT 59.064 41.667 23.04 0.00 44.78 3.79
2994 8358 4.202274 TGCAACTAGTAGTGGTTGTTAGCA 60.202 41.667 23.04 14.51 44.78 3.49
3056 8420 2.193536 GTGTGTTGGCAGGGTCCAC 61.194 63.158 0.00 0.00 35.50 4.02
3112 8476 2.915659 TTGAGTCGGGTGAGCCGT 60.916 61.111 23.25 4.12 34.97 5.68
3127 8491 1.441738 TGACGGACTGCATCATGTTG 58.558 50.000 0.00 0.00 0.00 3.33
3142 8506 2.892425 GGAGGCCGAAGCATGACG 60.892 66.667 0.00 0.00 42.56 4.35
3163 8527 0.798776 CGTGAGAAGCGGCAAAAGAT 59.201 50.000 1.45 0.00 0.00 2.40
3165 8529 0.110644 GTCGTGAGAAGCGGCAAAAG 60.111 55.000 1.45 0.00 45.01 2.27
3187 8551 1.226262 GGTGCCATGGGATACGGTT 59.774 57.895 15.13 0.00 37.60 4.44
3188 8552 1.352622 ATGGTGCCATGGGATACGGT 61.353 55.000 15.13 0.00 35.03 4.83
3196 8560 1.046472 AGATGCCAATGGTGCCATGG 61.046 55.000 7.63 7.63 36.68 3.66
3275 10455 2.623878 TGTTTGTCCCGTGAAGCTTA 57.376 45.000 0.00 0.00 0.00 3.09
3345 13740 9.775854 CAGATCACTGTTAGGATTAATCTTGAT 57.224 33.333 14.95 5.63 39.11 2.57
3388 13783 0.172578 CGTGGTAGGAACGCTGATGA 59.827 55.000 0.00 0.00 33.79 2.92
3470 15149 1.063174 GAAGCAAACTATCAGCAGCCG 59.937 52.381 0.00 0.00 0.00 5.52
3639 15385 9.708092 GGACTATTTTAGCGGTCTCTTTATATT 57.292 33.333 0.00 0.00 0.00 1.28
3744 15516 1.340114 CCCCTCTTTACAGCCCAGAAC 60.340 57.143 0.00 0.00 0.00 3.01
3825 15599 2.283298 CATCTGACCTGAATGAACCCG 58.717 52.381 0.00 0.00 0.00 5.28
3898 15751 4.993584 AGGATCTGCATATTTAGACAAGCG 59.006 41.667 0.00 0.00 0.00 4.68
4003 15856 4.152402 GTGTAACGCTTGATGATGTTGTCT 59.848 41.667 0.00 0.00 0.00 3.41
4134 15991 1.140816 GACTCGTGAGCAGGTGAAAC 58.859 55.000 0.00 0.00 0.00 2.78
4248 16164 3.953712 ACAACGTCACATCTACCATCA 57.046 42.857 0.00 0.00 0.00 3.07
4268 16189 6.467194 CCAGCATATCAAAGACCCCCTAAATA 60.467 42.308 0.00 0.00 0.00 1.40
4351 16337 0.675208 TCGCGTGGCCATACAAATGT 60.675 50.000 9.72 0.00 0.00 2.71
4431 16432 1.671845 TCAAACTTGTTACCCACACGC 59.328 47.619 0.00 0.00 33.98 5.34
4545 16564 5.360591 CCGCTCATTCCTAAGTAATCAGTT 58.639 41.667 0.00 0.00 0.00 3.16
4556 16575 0.830648 CCTTCACCCGCTCATTCCTA 59.169 55.000 0.00 0.00 0.00 2.94
4562 16581 0.824109 CATACTCCTTCACCCGCTCA 59.176 55.000 0.00 0.00 0.00 4.26
4563 16582 0.824759 ACATACTCCTTCACCCGCTC 59.175 55.000 0.00 0.00 0.00 5.03
4576 16595 2.582436 CGACGGGCCCAACATACT 59.418 61.111 24.92 0.00 0.00 2.12
4596 16615 3.874392 AATAAGCAAACACATGGGCTC 57.126 42.857 0.00 0.00 35.11 4.70
4647 16666 4.711949 ACAGCGGCAGCCCTCTTG 62.712 66.667 5.63 0.00 46.67 3.02
4847 16868 4.254492 GCGTGATCTTATTTATCCCTCCC 58.746 47.826 0.00 0.00 0.00 4.30
4961 16983 0.109272 TGAAGCCTCTCGCACTAACG 60.109 55.000 0.00 0.00 41.38 3.18
4981 17003 6.048732 TGCAAGAAGATGAACCACATACTA 57.951 37.500 0.00 0.00 39.56 1.82
5111 17136 2.245795 TTTTCTTGATCATGCACGCG 57.754 45.000 3.53 3.53 0.00 6.01
5136 17161 3.117813 ACCACCTACACCTTTGCAGTTAA 60.118 43.478 0.00 0.00 0.00 2.01
5137 17162 2.440253 ACCACCTACACCTTTGCAGTTA 59.560 45.455 0.00 0.00 0.00 2.24
5150 17175 5.995897 AGTTGTTAACATTCAGACCACCTAC 59.004 40.000 9.56 0.00 0.00 3.18
5168 17193 5.289510 AGATCCATACCCCTCTTAGTTGTT 58.710 41.667 0.00 0.00 0.00 2.83
5169 17194 4.897051 AGATCCATACCCCTCTTAGTTGT 58.103 43.478 0.00 0.00 0.00 3.32
5291 17321 9.506018 AAAAACAGCTAATTTGGAAAGCAATAT 57.494 25.926 0.30 0.00 38.75 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.