AutoCloner

Multiple sequence alignment - TraesCS3B01G524800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G524800	chr3B	100.000	3125	0	0	1	3125	766662702	766659578	0.000000e+00	5771.0
1	TraesCS3B01G524800	chr3B	95.112	982	35	4	1373	2354	768482085	768483053	0.000000e+00	1535.0
2	TraesCS3B01G524800	chr3B	86.952	1027	113	12	1130	2147	768746757	768745743	0.000000e+00	1134.0
3	TraesCS3B01G524800	chr3B	85.592	1048	118	22	1194	2224	766643162	766642131	0.000000e+00	1068.0
4	TraesCS3B01G524800	chr3B	93.701	508	25	6	871	1377	768470693	768471194	0.000000e+00	754.0
5	TraesCS3B01G524800	chr3B	87.297	677	37	12	263	906	768470032	768470692	0.000000e+00	728.0
6	TraesCS3B01G524800	chr3B	89.593	442	37	4	2499	2939	768483499	768483932	1.270000e-153	553.0
7	TraesCS3B01G524800	chr3B	91.608	143	12	0	2936	3078	766784440	766784298	6.840000e-47	198.0
8	TraesCS3B01G524800	chr3B	91.608	143	12	0	2936	3078	768342281	768342423	6.840000e-47	198.0
9	TraesCS3B01G524800	chr3B	89.000	100	11	0	518	617	766643957	766643858	1.180000e-24	124.0
10	TraesCS3B01G524800	chr3B	84.615	104	12	1	518	617	768742061	768741958	1.980000e-17	100.0
11	TraesCS3B01G524800	chr3B	88.679	53	2	2	1025	1073	766643436	766643384	9.360000e-06	62.1
12	TraesCS3B01G524800	chr3A	92.792	1637	82	11	871	2497	711286643	711285033	0.000000e+00	2337.0
13	TraesCS3B01G524800	chr3A	88.109	1026	107	12	1109	2129	712545391	712546406	0.000000e+00	1205.0
14	TraesCS3B01G524800	chr3A	84.693	1189	137	29	1140	2308	711260746	711259583	0.000000e+00	1146.0
15	TraesCS3B01G524800	chr3A	89.632	598	36	4	327	906	711287233	711286644	0.000000e+00	737.0
16	TraesCS3B01G524800	chr3A	94.569	313	13	2	7	315	711290524	711290212	6.060000e-132	481.0
17	TraesCS3B01G524800	chr3A	77.538	463	43	19	2504	2939	711284937	711284509	4.060000e-54	222.0
18	TraesCS3B01G524800	chr3A	90.909	143	13	0	2936	3078	711296609	711296467	3.180000e-45	193.0
19	TraesCS3B01G524800	chr3A	86.139	101	14	0	517	617	711261536	711261436	3.300000e-20	110.0
20	TraesCS3B01G524800	chr3A	94.737	38	1	1	1037	1073	711260963	711260926	1.210000e-04	58.4
21	TraesCS3B01G524800	chr3D	92.297	1402	65	17	1074	2448	575740633	575739248	0.000000e+00	1951.0
22	TraesCS3B01G524800	chr3D	85.332	1234	130	31	1109	2315	577239380	577240589	0.000000e+00	1229.0
23	TraesCS3B01G524800	chr3D	85.008	1214	137	29	1140	2336	575737910	575736725	0.000000e+00	1192.0
24	TraesCS3B01G524800	chr3D	94.830	735	27	2	340	1070	575741429	575740702	0.000000e+00	1136.0
25	TraesCS3B01G524800	chr3D	93.811	307	5	1	5	311	575741887	575741595	1.710000e-122	449.0
26	TraesCS3B01G524800	chr3D	86.243	189	17	1	2936	3124	575759013	575758834	2.460000e-46	196.0
27	TraesCS3B01G524800	chr3D	79.111	225	24	11	868	1073	577238283	577238503	1.960000e-27	134.0
28	TraesCS3B01G524800	chr3D	85.577	104	11	1	518	617	577249010	577249113	4.260000e-19	106.0
29	TraesCS3B01G524800	chr3D	84.314	102	14	2	517	617	575738741	575738641	7.130000e-17	99.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G524800	chr3B	766659578	766662702	3124	True	5771.000000	5771	100.00000	1	3125	1	chr3B.!!$R1	3124
1	TraesCS3B01G524800	chr3B	768482085	768483932	1847	False	1044.000000	1535	92.35250	1373	2939	2	chr3B.!!$F3	1566
2	TraesCS3B01G524800	chr3B	768470032	768471194	1162	False	741.000000	754	90.49900	263	1377	2	chr3B.!!$F2	1114
3	TraesCS3B01G524800	chr3B	768741958	768746757	4799	True	617.000000	1134	85.78350	518	2147	2	chr3B.!!$R4	1629
4	TraesCS3B01G524800	chr3B	766642131	766643957	1826	True	418.033333	1068	87.75700	518	2224	3	chr3B.!!$R3	1706
5	TraesCS3B01G524800	chr3A	712545391	712546406	1015	False	1205.000000	1205	88.10900	1109	2129	1	chr3A.!!$F1	1020
6	TraesCS3B01G524800	chr3A	711284509	711290524	6015	True	944.250000	2337	88.63275	7	2939	4	chr3A.!!$R3	2932
7	TraesCS3B01G524800	chr3A	711259583	711261536	1953	True	438.133333	1146	88.52300	517	2308	3	chr3A.!!$R2	1791
8	TraesCS3B01G524800	chr3D	575736725	575741887	5162	True	965.400000	1951	90.05200	5	2448	5	chr3D.!!$R2	2443
9	TraesCS3B01G524800	chr3D	577238283	577240589	2306	False	681.500000	1229	82.22150	868	2315	2	chr3D.!!$F2	1447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
939	4080	0.315568	AGAGACGAGTGTGCTTGGTC	59.684	55.0	0.0	0.0	0.0	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2754	10484	0.034896	AACTAGTGTGTGGAAGCCCG	59.965	55.0	0.0	0.0	34.29	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
146	164	2.586792	CCGGAGGCTCCAGAAAGG	59.413	66.667	31.69	20.51	46.14	3.11
147	165	1.990060	CCGGAGGCTCCAGAAAGGA	60.990	63.158	31.69	0.00	46.14	3.36
478	3464	3.072476	ACAAGCCTACAAGGTACACACAT	59.928	43.478	0.00	0.00	37.80	3.21
496	3482	7.782049	ACACACATACAATTAGCTTAGCTAGA	58.218	34.615	13.93	6.35	42.34	2.43
563	3549	0.957362	GCCATCATCAGCCCTTAAGC	59.043	55.000	0.00	0.00	0.00	3.09
728	3780	3.751518	GATAAAATATGGCCGGACAGGT	58.248	45.455	18.96	1.00	43.70	4.00
756	3808	1.300620	CTGACAGCCGTTCAACCGA	60.301	57.895	0.00	0.00	0.00	4.69
855	3921	2.556622	TGGAAAATGGAAACCGAGAAGC	59.443	45.455	0.00	0.00	0.00	3.86
864	3930	4.933400	TGGAAACCGAGAAGCAACTAATAC	59.067	41.667	0.00	0.00	0.00	1.89
939	4080	0.315568	AGAGACGAGTGTGCTTGGTC	59.684	55.000	0.00	0.00	0.00	4.02
1145	5170	6.937465	TGATTACATGCTGTACCTAACACAAA	59.063	34.615	0.00	0.00	31.69	2.83
1188	5220	4.339439	GCATGCCGCATTTTTATTTTGT	57.661	36.364	6.36	0.00	41.79	2.83
1191	5223	5.059465	GCATGCCGCATTTTTATTTTGTTTG	59.941	36.000	6.36	0.00	41.79	2.93
1495	5530	3.356639	GAGGTCATCGACAGCGCCA	62.357	63.158	2.29	0.00	37.46	5.69
1637	5672	1.068417	CCTCCGACGGTGTGTTCAA	59.932	57.895	14.79	0.00	0.00	2.69
1893	5934	2.704065	CGGGGTTAAGGTGGTCATATCT	59.296	50.000	0.00	0.00	0.00	1.98
2177	8063	1.550130	AAGCTGCCTGGCAATGCAAT	61.550	50.000	27.95	16.94	38.41	3.56
2178	8064	1.078708	GCTGCCTGGCAATGCAATT	60.079	52.632	23.51	0.00	38.41	2.32
2257	8151	5.371115	AAATGTCCCATAAAACACGTCAG	57.629	39.130	0.00	0.00	0.00	3.51
2325	8229	5.356882	TTTACTCTCAATTTTCTGTGCCG	57.643	39.130	0.00	0.00	0.00	5.69
2373	8513	2.996621	AGTTGAGACAGCGCACTTTATC	59.003	45.455	11.47	0.00	0.00	1.75
2374	8514	2.736721	GTTGAGACAGCGCACTTTATCA	59.263	45.455	11.47	2.81	0.00	2.15
2402	8544	3.263425	ACGAGAGTGTTGGGGATACAAAT	59.737	43.478	0.00	0.00	46.97	2.32
2413	8555	3.883489	GGGGATACAAATGTTGCTAGGAC	59.117	47.826	0.00	0.00	39.74	3.85
2501	10205	0.657840	AATTATGCTCGCGCTGGAAC	59.342	50.000	5.56	0.00	36.97	3.62
2523	10227	0.937699	CGTTTGCGACTCTCCGACAA	60.938	55.000	0.00	0.00	41.33	3.18
2531	10235	1.936547	GACTCTCCGACAATCAATGGC	59.063	52.381	0.00	0.00	0.00	4.40
2538	10242	2.752354	CCGACAATCAATGGCCAAGTAA	59.248	45.455	10.96	0.00	31.01	2.24
2565	10269	0.801251	GCATCGCCATATCTTCTGCC	59.199	55.000	0.00	0.00	0.00	4.85
2597	10301	3.818180	CTTCTCTCCATGCATAGGCTTT	58.182	45.455	0.00	0.00	41.91	3.51
2598	10302	4.744867	GCTTCTCTCCATGCATAGGCTTTA	60.745	45.833	0.00	0.00	41.91	1.85
2610	10314	5.186198	GCATAGGCTTTAAGAGTTTCTGGA	58.814	41.667	0.00	0.00	36.96	3.86
2621	10325	4.850680	AGAGTTTCTGGATCGAGTACTCT	58.149	43.478	24.83	24.83	36.85	3.24
2634	10338	4.158025	TCGAGTACTCTCTTGGAAATCACC	59.842	45.833	20.34	0.00	38.45	4.02
2670	10374	2.877384	ACCCCCTGGTCATCTCCA	59.123	61.111	0.00	0.00	43.06	3.86
2734	10464	1.854126	CCGCATCGGCATTCAATTTTC	59.146	47.619	0.00	0.00	41.17	2.29
2769	10499	4.643387	GGCGGGCTTCCACACACT	62.643	66.667	0.00	0.00	0.00	3.55
2810	10779	2.668024	TGCTCCTGCATGGCGTTA	59.332	55.556	0.00	0.00	45.31	3.18
2887	10856	0.612174	GGCTTTGGAACTCCCCTTCC	60.612	60.000	0.00	0.00	40.36	3.46
2939	11406	2.038557	GCCCAGAGAGTAACAAGAACCA	59.961	50.000	0.00	0.00	0.00	3.67
2940	11407	3.866449	GCCCAGAGAGTAACAAGAACCAG	60.866	52.174	0.00	0.00	0.00	4.00
2941	11408	3.578716	CCCAGAGAGTAACAAGAACCAGA	59.421	47.826	0.00	0.00	0.00	3.86
2942	11409	4.040461	CCCAGAGAGTAACAAGAACCAGAA	59.960	45.833	0.00	0.00	0.00	3.02
2943	11410	5.280215	CCCAGAGAGTAACAAGAACCAGAAT	60.280	44.000	0.00	0.00	0.00	2.40
2944	11411	5.872070	CCAGAGAGTAACAAGAACCAGAATC	59.128	44.000	0.00	0.00	0.00	2.52
2961	11949	4.034858	CAGAATCTGATCAAACATGTCGGG	59.965	45.833	3.77	0.00	32.44	5.14
2962	11950	1.737838	TCTGATCAAACATGTCGGGC	58.262	50.000	0.00	0.00	0.00	6.13
2964	11952	1.399440	CTGATCAAACATGTCGGGCAG	59.601	52.381	0.00	0.06	0.00	4.85
2967	11955	2.035626	AAACATGTCGGGCAGGGG	59.964	61.111	0.00	0.00	32.37	4.79
3032	12020	0.685097	TTCAACGAGAACAGGGAGGG	59.315	55.000	0.00	0.00	0.00	4.30
3033	12021	1.376037	CAACGAGAACAGGGAGGGC	60.376	63.158	0.00	0.00	0.00	5.19
3034	12022	2.593956	AACGAGAACAGGGAGGGCC	61.594	63.158	0.00	0.00	0.00	5.80
3035	12023	2.685380	CGAGAACAGGGAGGGCCT	60.685	66.667	5.25	5.25	0.00	5.19
3038	12026	4.432741	GAACAGGGAGGGCCTGGC	62.433	72.222	12.95	11.05	39.38	4.85
3044	12032	2.771762	GGAGGGCCTGGCTGAGAT	60.772	66.667	12.95	0.00	0.00	2.75
3045	12033	2.817056	GGAGGGCCTGGCTGAGATC	61.817	68.421	12.95	9.26	0.00	2.75
3051	12039	0.249405	GCCTGGCTGAGATCGAGAAG	60.249	60.000	12.43	0.00	0.00	2.85
3063	12051	0.320771	TCGAGAAGCACTTTGGGCTC	60.321	55.000	0.00	0.00	41.66	4.70
3069	12057	1.322442	AGCACTTTGGGCTCTTCAAC	58.678	50.000	0.00	0.00	36.81	3.18
3078	12066	1.235281	GGCTCTTCAACCCGGACAAC	61.235	60.000	0.73	0.00	0.00	3.32
3079	12067	1.235281	GCTCTTCAACCCGGACAACC	61.235	60.000	0.73	0.00	0.00	3.77
3080	12068	0.605589	CTCTTCAACCCGGACAACCC	60.606	60.000	0.73	0.00	0.00	4.11
3111	12099	1.210155	GGCGCACACCATCAGTTTC	59.790	57.895	10.83	0.00	0.00	2.78
3113	12101	1.438651	GCGCACACCATCAGTTTCTA	58.561	50.000	0.30	0.00	0.00	2.10
3115	12103	2.225491	GCGCACACCATCAGTTTCTAAA	59.775	45.455	0.30	0.00	0.00	1.85
3117	12105	3.664276	CGCACACCATCAGTTTCTAAACG	60.664	47.826	0.18	0.00	43.51	3.60
3122	12110	2.159707	CCATCAGTTTCTAAACGCACGG	60.160	50.000	0.18	0.00	43.51	4.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.470888	CCACCACCTCCCGCTAGG	61.471	72.222	0.00	0.03	42.82	3.02
137	155	2.978978	TGTTGATGACCTCCTTTCTGGA	59.021	45.455	0.00	0.00	43.86	3.86
138	156	3.423539	TGTTGATGACCTCCTTTCTGG	57.576	47.619	0.00	0.00	37.10	3.86
139	157	5.105997	GGAAATGTTGATGACCTCCTTTCTG	60.106	44.000	0.00	0.00	0.00	3.02
140	158	5.012893	GGAAATGTTGATGACCTCCTTTCT	58.987	41.667	0.00	0.00	0.00	2.52
141	159	5.012893	AGGAAATGTTGATGACCTCCTTTC	58.987	41.667	0.00	0.00	30.67	2.62
142	160	5.003096	AGGAAATGTTGATGACCTCCTTT	57.997	39.130	0.00	0.00	30.67	3.11
143	161	4.593956	GAGGAAATGTTGATGACCTCCTT	58.406	43.478	0.00	0.00	38.23	3.36
144	162	3.369892	CGAGGAAATGTTGATGACCTCCT	60.370	47.826	0.00	0.00	40.22	3.69
145	163	2.939103	CGAGGAAATGTTGATGACCTCC	59.061	50.000	0.00	0.00	40.22	4.30
146	164	2.939103	CCGAGGAAATGTTGATGACCTC	59.061	50.000	0.00	0.00	40.03	3.85
147	165	2.571653	TCCGAGGAAATGTTGATGACCT	59.428	45.455	0.00	0.00	0.00	3.85
148	166	2.678336	GTCCGAGGAAATGTTGATGACC	59.322	50.000	0.00	0.00	0.00	4.02
149	167	2.348666	CGTCCGAGGAAATGTTGATGAC	59.651	50.000	0.00	0.00	0.00	3.06
230	248	3.703420	ACGCGTAGGTTTCATCATAGAC	58.297	45.455	11.67	0.00	0.00	2.59
258	276	3.314357	GGACAAATATGACCCCTAAACGC	59.686	47.826	0.00	0.00	35.64	4.84
478	3464	7.255871	GCTAACCCTCTAGCTAAGCTAATTGTA	60.256	40.741	4.44	0.00	40.82	2.41
496	3482	2.351276	CCAGTTGCCGCTAACCCT	59.649	61.111	0.00	0.00	0.00	4.34
668	3712	0.956902	TGACTCGATCCGTCCGTGAA	60.957	55.000	7.19	0.00	0.00	3.18
728	3780	0.813610	CGGCTGTCAGTTGTCACCAA	60.814	55.000	0.93	0.00	0.00	3.67
738	3790	0.670546	ATCGGTTGAACGGCTGTCAG	60.671	55.000	0.00	0.00	0.00	3.51
739	3791	0.250124	AATCGGTTGAACGGCTGTCA	60.250	50.000	0.00	0.00	0.00	3.58
740	3792	0.872388	AAATCGGTTGAACGGCTGTC	59.128	50.000	0.00	0.00	0.00	3.51
741	3793	0.872388	GAAATCGGTTGAACGGCTGT	59.128	50.000	0.00	0.00	0.00	4.40
742	3794	0.168128	GGAAATCGGTTGAACGGCTG	59.832	55.000	0.00	0.00	0.00	4.85
743	3795	0.250553	TGGAAATCGGTTGAACGGCT	60.251	50.000	0.00	0.00	0.00	5.52
744	3796	0.109919	GTGGAAATCGGTTGAACGGC	60.110	55.000	0.00	0.00	0.00	5.68
756	3808	2.925724	TGTTCGTTGGTCTGTGGAAAT	58.074	42.857	0.00	0.00	0.00	2.17
855	3921	7.360101	GGCGCAATAATAGACCAGTATTAGTTG	60.360	40.741	10.83	0.00	30.23	3.16
864	3930	3.627577	AGTTTGGCGCAATAATAGACCAG	59.372	43.478	10.83	0.00	0.00	4.00
939	4080	4.223477	CCCCCTTATTTGGATATGCAATGG	59.777	45.833	10.71	10.23	0.00	3.16
1145	5170	5.221303	TGCAAGAGCTAATGAGTTTGCTTTT	60.221	36.000	13.66	0.00	44.50	2.27
1149	5174	3.837213	TGCAAGAGCTAATGAGTTTGC	57.163	42.857	2.52	8.37	42.74	3.68
1191	5223	2.821366	CCGATGGAGTGCACTGGC	60.821	66.667	27.27	10.92	41.68	4.85
1495	5530	0.985490	GGGAGGATGGTCTTCTGGCT	60.985	60.000	0.00	0.00	0.00	4.75
1528	5563	1.446445	CCACGATCGCCCGTTGTAA	60.446	57.895	16.60	0.00	41.29	2.41
1569	5604	1.140816	GCACAGAAGTCGACACCTTC	58.859	55.000	19.50	12.82	38.87	3.46
1624	5659	0.179067	TGGTCCTTGAACACACCGTC	60.179	55.000	0.00	0.00	0.00	4.79
1637	5672	1.412074	GCCCCATGAATGATTGGTCCT	60.412	52.381	0.00	0.00	0.00	3.85
2179	8065	2.127609	GAAACGCGTGCAGTCTGC	60.128	61.111	14.98	18.32	45.29	4.26
2180	8066	1.202568	CTGAAACGCGTGCAGTCTG	59.797	57.895	25.62	15.69	0.00	3.51
2181	8067	1.227263	ACTGAAACGCGTGCAGTCT	60.227	52.632	30.69	16.89	38.41	3.24
2182	8068	3.319904	ACTGAAACGCGTGCAGTC	58.680	55.556	30.69	19.26	38.41	3.51
2189	8075	0.232303	GAGTGGTTGACTGAAACGCG	59.768	55.000	3.53	3.53	36.82	6.01
2192	8078	2.030457	CACACGAGTGGTTGACTGAAAC	59.970	50.000	4.94	0.00	42.13	2.78
2351	8491	0.940126	AAAGTGCGCTGTCTCAACTG	59.060	50.000	9.73	0.00	0.00	3.16
2402	8544	2.685388	CTCTCAGATCGTCCTAGCAACA	59.315	50.000	0.00	0.00	0.00	3.33
2413	8555	1.568606	CATGTGTGGCTCTCAGATCG	58.431	55.000	0.00	0.00	0.00	3.69
2464	8606	6.587226	GCATAATTTGAAGCTCACAACATTGA	59.413	34.615	5.91	0.00	0.00	2.57
2583	10287	5.591877	AGAAACTCTTAAAGCCTATGCATGG	59.408	40.000	10.16	6.20	41.13	3.66
2597	10301	6.416415	AGAGTACTCGATCCAGAAACTCTTA	58.584	40.000	17.07	0.00	38.96	2.10
2598	10302	5.258051	AGAGTACTCGATCCAGAAACTCTT	58.742	41.667	17.07	8.05	38.96	2.85
2610	10314	5.163499	GGTGATTTCCAAGAGAGTACTCGAT	60.163	44.000	17.07	7.12	46.64	3.59
2621	10325	0.672401	GTCCGCGGTGATTTCCAAGA	60.672	55.000	27.15	0.00	0.00	3.02
2670	10374	1.152652	TGCGGTTGGGGTGAATTGT	60.153	52.632	0.00	0.00	0.00	2.71
2695	10418	1.407258	GGCAGTAGCGAAGACTCAGAT	59.593	52.381	0.00	0.00	43.41	2.90
2751	10481	4.643387	GTGTGTGGAAGCCCGCCT	62.643	66.667	0.00	0.00	42.26	5.52
2752	10482	3.248446	TAGTGTGTGGAAGCCCGCC	62.248	63.158	0.00	0.00	42.26	6.13
2753	10483	1.741770	CTAGTGTGTGGAAGCCCGC	60.742	63.158	0.00	0.00	43.22	6.13
2754	10484	0.034896	AACTAGTGTGTGGAAGCCCG	59.965	55.000	0.00	0.00	34.29	6.13
2769	10499	0.543410	TTCGGCTCCCAGACCAACTA	60.543	55.000	0.00	0.00	0.00	2.24
2810	10779	2.281484	GGTGTGGTCGGCACATGT	60.281	61.111	0.00	0.00	38.51	3.21
2939	11406	4.194640	CCCGACATGTTTGATCAGATTCT	58.805	43.478	0.00	0.00	0.00	2.40
2940	11407	3.242870	GCCCGACATGTTTGATCAGATTC	60.243	47.826	0.00	0.00	0.00	2.52
2941	11408	2.684881	GCCCGACATGTTTGATCAGATT	59.315	45.455	0.00	0.00	0.00	2.40
2942	11409	2.292267	GCCCGACATGTTTGATCAGAT	58.708	47.619	0.00	0.00	0.00	2.90
2943	11410	1.003003	TGCCCGACATGTTTGATCAGA	59.997	47.619	0.00	0.00	0.00	3.27
2944	11411	1.399440	CTGCCCGACATGTTTGATCAG	59.601	52.381	0.00	0.94	0.00	2.90
2986	11974	2.659897	CACGCAGGCCTCTATCGC	60.660	66.667	0.00	0.94	0.00	4.58
2989	11977	1.141881	CGAACACGCAGGCCTCTAT	59.858	57.895	0.00	0.00	0.00	1.98
3028	12016	2.828145	GATCTCAGCCAGGCCCTC	59.172	66.667	8.22	0.00	0.00	4.30
3031	12019	1.680522	TTCTCGATCTCAGCCAGGCC	61.681	60.000	8.22	0.00	0.00	5.19
3032	12020	0.249405	CTTCTCGATCTCAGCCAGGC	60.249	60.000	1.84	1.84	0.00	4.85
3033	12021	0.249405	GCTTCTCGATCTCAGCCAGG	60.249	60.000	0.00	0.00	0.00	4.45
3034	12022	0.459078	TGCTTCTCGATCTCAGCCAG	59.541	55.000	0.00	0.00	0.00	4.85
3035	12023	0.174389	GTGCTTCTCGATCTCAGCCA	59.826	55.000	0.00	0.00	0.00	4.75
3038	12026	2.928757	CCAAAGTGCTTCTCGATCTCAG	59.071	50.000	0.00	0.00	0.00	3.35
3039	12027	2.354103	CCCAAAGTGCTTCTCGATCTCA	60.354	50.000	0.00	0.00	0.00	3.27
3040	12028	2.275318	CCCAAAGTGCTTCTCGATCTC	58.725	52.381	0.00	0.00	0.00	2.75
3041	12029	1.677217	GCCCAAAGTGCTTCTCGATCT	60.677	52.381	0.00	0.00	0.00	2.75
3044	12032	0.320771	GAGCCCAAAGTGCTTCTCGA	60.321	55.000	0.00	0.00	39.69	4.04
3045	12033	0.321122	AGAGCCCAAAGTGCTTCTCG	60.321	55.000	0.00	0.00	39.69	4.04
3051	12039	0.315251	GGTTGAAGAGCCCAAAGTGC	59.685	55.000	0.00	0.00	0.00	4.40
3063	12051	4.074647	GGGTTGTCCGGGTTGAAG	57.925	61.111	0.00	0.00	33.83	3.02
3096	12084	3.810373	CGTTTAGAAACTGATGGTGTGC	58.190	45.455	3.80	0.00	36.77	4.57
3097	12085	3.249799	TGCGTTTAGAAACTGATGGTGTG	59.750	43.478	3.80	0.00	36.77	3.82
3100	12088	2.478894	CGTGCGTTTAGAAACTGATGGT	59.521	45.455	3.80	0.00	36.77	3.55
3105	12093	0.584396	TGCCGTGCGTTTAGAAACTG	59.416	50.000	3.80	0.00	36.77	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.