Multiple sequence alignment - TraesCS3B01G523600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G523600 chr3B 100.000 2225 0 0 1 2225 766098763 766100987 0.000000e+00 4109
1 TraesCS3B01G523600 chr3B 93.390 1059 57 6 735 1793 188482350 188483395 0.000000e+00 1555
2 TraesCS3B01G523600 chr3B 92.148 433 34 0 1793 2225 44005460 44005892 1.460000e-171 612
3 TraesCS3B01G523600 chr3B 91.917 433 35 0 1793 2225 43899072 43899504 6.790000e-170 606
4 TraesCS3B01G523600 chr2B 97.824 1057 23 0 735 1791 77334123 77335179 0.000000e+00 1825
5 TraesCS3B01G523600 chr2B 98.509 738 8 1 1 738 77332633 77333367 0.000000e+00 1299
6 TraesCS3B01G523600 chr6D 96.321 1060 38 1 735 1793 15119553 15120612 0.000000e+00 1740
7 TraesCS3B01G523600 chr6D 96.206 738 20 4 1 738 15118043 15118772 0.000000e+00 1201
8 TraesCS3B01G523600 chr3A 95.932 1057 41 2 735 1791 55446034 55447088 0.000000e+00 1712
9 TraesCS3B01G523600 chr6A 96.180 1047 38 1 744 1790 162274800 162273756 0.000000e+00 1711
10 TraesCS3B01G523600 chr6A 95.373 1059 47 1 735 1793 613366808 613367864 0.000000e+00 1683
11 TraesCS3B01G523600 chr6A 96.341 738 24 2 1 738 162276345 162275611 0.000000e+00 1210
12 TraesCS3B01G523600 chr4D 95.382 1061 49 0 735 1795 386932588 386933648 0.000000e+00 1688
13 TraesCS3B01G523600 chr4D 96.883 738 20 2 1 738 386931134 386931868 0.000000e+00 1232
14 TraesCS3B01G523600 chr7B 94.508 1056 56 1 735 1790 228682223 228681170 0.000000e+00 1628
15 TraesCS3B01G523600 chr7B 95.393 738 31 2 1 738 228683655 228682921 0.000000e+00 1171
16 TraesCS3B01G523600 chr1A 97.243 798 22 0 994 1791 8732460 8733257 0.000000e+00 1352
17 TraesCS3B01G523600 chr1A 97.290 738 18 1 1 738 565153856 565154591 0.000000e+00 1251
18 TraesCS3B01G523600 chr3D 96.477 738 23 2 1 738 61930384 61931118 0.000000e+00 1216
19 TraesCS3B01G523600 chr6B 94.317 739 38 4 1 738 171789987 171789252 0.000000e+00 1129
20 TraesCS3B01G523600 chr6B 89.376 433 19 1 1793 2225 704854921 704854516 9.110000e-144 520
21 TraesCS3B01G523600 chr5A 94.309 738 38 3 1 738 225611146 225611879 0.000000e+00 1127
22 TraesCS3B01G523600 chr5A 94.534 311 17 0 735 1045 225612737 225613047 4.300000e-132 481
23 TraesCS3B01G523600 chr7A 92.093 430 34 0 1796 2225 35364822 35364393 6.790000e-170 606
24 TraesCS3B01G523600 chr7A 89.767 430 42 1 1793 2220 686003066 686002637 1.160000e-152 549
25 TraesCS3B01G523600 chr7A 89.535 430 42 2 1793 2220 627116444 627116872 1.940000e-150 542
26 TraesCS3B01G523600 chr4A 92.093 430 34 0 1796 2225 689632222 689631793 6.790000e-170 606
27 TraesCS3B01G523600 chr1D 89.510 429 14 2 1793 2221 7194720 7195117 4.240000e-142 514
28 TraesCS3B01G523600 chr1B 81.461 178 33 0 1823 2000 565907295 565907472 1.780000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G523600 chr3B 766098763 766100987 2224 False 4109.0 4109 100.0000 1 2225 1 chr3B.!!$F4 2224
1 TraesCS3B01G523600 chr3B 188482350 188483395 1045 False 1555.0 1555 93.3900 735 1793 1 chr3B.!!$F3 1058
2 TraesCS3B01G523600 chr2B 77332633 77335179 2546 False 1562.0 1825 98.1665 1 1791 2 chr2B.!!$F1 1790
3 TraesCS3B01G523600 chr6D 15118043 15120612 2569 False 1470.5 1740 96.2635 1 1793 2 chr6D.!!$F1 1792
4 TraesCS3B01G523600 chr3A 55446034 55447088 1054 False 1712.0 1712 95.9320 735 1791 1 chr3A.!!$F1 1056
5 TraesCS3B01G523600 chr6A 613366808 613367864 1056 False 1683.0 1683 95.3730 735 1793 1 chr6A.!!$F1 1058
6 TraesCS3B01G523600 chr6A 162273756 162276345 2589 True 1460.5 1711 96.2605 1 1790 2 chr6A.!!$R1 1789
7 TraesCS3B01G523600 chr4D 386931134 386933648 2514 False 1460.0 1688 96.1325 1 1795 2 chr4D.!!$F1 1794
8 TraesCS3B01G523600 chr7B 228681170 228683655 2485 True 1399.5 1628 94.9505 1 1790 2 chr7B.!!$R1 1789
9 TraesCS3B01G523600 chr1A 8732460 8733257 797 False 1352.0 1352 97.2430 994 1791 1 chr1A.!!$F1 797
10 TraesCS3B01G523600 chr1A 565153856 565154591 735 False 1251.0 1251 97.2900 1 738 1 chr1A.!!$F2 737
11 TraesCS3B01G523600 chr3D 61930384 61931118 734 False 1216.0 1216 96.4770 1 738 1 chr3D.!!$F1 737
12 TraesCS3B01G523600 chr6B 171789252 171789987 735 True 1129.0 1129 94.3170 1 738 1 chr6B.!!$R1 737
13 TraesCS3B01G523600 chr5A 225611146 225613047 1901 False 804.0 1127 94.4215 1 1045 2 chr5A.!!$F1 1044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.771127 TGGGAGGGTTCTGTTTCAGG 59.229 55.0 0.0 0.0 31.51 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 3735 0.037046 TGCTGTGTCATCGATGTGCT 60.037 50.0 24.09 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.094545 CAGAAAGCAAGCCATTACCACC 60.095 50.000 0.00 0.00 0.00 4.61
118 119 0.771127 TGGGAGGGTTCTGTTTCAGG 59.229 55.000 0.00 0.00 31.51 3.86
750 2437 6.310711 GTCACTACTGAATAACAAGGCAGTAC 59.689 42.308 0.00 0.00 41.43 2.73
951 2638 3.767711 TGAAGTCTCTCCAGAAGTAGCA 58.232 45.455 0.00 0.00 0.00 3.49
1092 2779 6.595326 CCACTGAAATACTTGATGCACTTAGA 59.405 38.462 0.00 0.00 0.00 2.10
1362 3050 4.984161 GCACTGTTTATGTCAAGCATTTGT 59.016 37.500 0.00 0.00 38.94 2.83
1365 3053 7.138081 CACTGTTTATGTCAAGCATTTGTACA 58.862 34.615 0.00 0.00 38.94 2.90
1577 3265 7.088905 AGTCAGATTTCATTTTTGAGTGATGC 58.911 34.615 0.00 0.00 0.00 3.91
1616 3304 5.106948 CCTGGTAATGTAGCTATGCAATTCG 60.107 44.000 0.00 0.00 0.00 3.34
1795 3483 2.993899 AGACATCCAAACGAAGCGTAAG 59.006 45.455 0.00 0.00 39.99 2.34
1796 3484 2.735134 GACATCCAAACGAAGCGTAAGT 59.265 45.455 0.00 0.00 39.99 2.24
1797 3485 3.135994 ACATCCAAACGAAGCGTAAGTT 58.864 40.909 0.00 0.00 39.99 2.66
1798 3486 3.059188 ACATCCAAACGAAGCGTAAGTTG 60.059 43.478 0.00 0.00 39.99 3.16
1799 3487 1.262151 TCCAAACGAAGCGTAAGTTGC 59.738 47.619 0.00 0.00 39.99 4.17
1800 3488 1.263217 CCAAACGAAGCGTAAGTTGCT 59.737 47.619 0.00 0.00 46.68 3.91
1813 3501 8.895932 AGCGTAAGTTGCTTTATTAAATCTTG 57.104 30.769 0.00 0.00 40.48 3.02
1814 3502 8.512138 AGCGTAAGTTGCTTTATTAAATCTTGT 58.488 29.630 0.00 0.00 40.48 3.16
1815 3503 8.575454 GCGTAAGTTGCTTTATTAAATCTTGTG 58.425 33.333 0.00 0.00 41.68 3.33
1816 3504 9.607285 CGTAAGTTGCTTTATTAAATCTTGTGT 57.393 29.630 0.00 0.00 0.00 3.72
1820 3508 8.764287 AGTTGCTTTATTAAATCTTGTGTTTGC 58.236 29.630 0.00 0.00 0.00 3.68
1821 3509 7.332003 TGCTTTATTAAATCTTGTGTTTGCG 57.668 32.000 0.00 0.00 0.00 4.85
1822 3510 6.920758 TGCTTTATTAAATCTTGTGTTTGCGT 59.079 30.769 0.00 0.00 0.00 5.24
1823 3511 7.114247 TGCTTTATTAAATCTTGTGTTTGCGTC 59.886 33.333 0.00 0.00 0.00 5.19
1824 3512 7.541743 TTTATTAAATCTTGTGTTTGCGTCG 57.458 32.000 0.00 0.00 0.00 5.12
1825 3513 4.797693 TTAAATCTTGTGTTTGCGTCGA 57.202 36.364 0.00 0.00 0.00 4.20
1826 3514 3.896648 AAATCTTGTGTTTGCGTCGAT 57.103 38.095 0.00 0.00 0.00 3.59
1827 3515 2.880822 ATCTTGTGTTTGCGTCGATG 57.119 45.000 0.00 0.00 0.00 3.84
1828 3516 1.577468 TCTTGTGTTTGCGTCGATGT 58.423 45.000 6.48 0.00 0.00 3.06
1829 3517 1.260297 TCTTGTGTTTGCGTCGATGTG 59.740 47.619 6.48 0.00 0.00 3.21
1830 3518 0.316607 TTGTGTTTGCGTCGATGTGC 60.317 50.000 6.48 3.38 0.00 4.57
1831 3519 1.157257 TGTGTTTGCGTCGATGTGCT 61.157 50.000 6.48 0.00 0.00 4.40
1832 3520 0.041312 GTGTTTGCGTCGATGTGCTT 60.041 50.000 6.48 0.00 0.00 3.91
1833 3521 0.041400 TGTTTGCGTCGATGTGCTTG 60.041 50.000 6.48 0.00 0.00 4.01
1834 3522 0.041312 GTTTGCGTCGATGTGCTTGT 60.041 50.000 6.48 0.00 0.00 3.16
1835 3523 0.041400 TTTGCGTCGATGTGCTTGTG 60.041 50.000 6.48 0.00 0.00 3.33
1836 3524 1.157257 TTGCGTCGATGTGCTTGTGT 61.157 50.000 6.48 0.00 0.00 3.72
1837 3525 1.154599 GCGTCGATGTGCTTGTGTG 60.155 57.895 6.48 0.00 0.00 3.82
1838 3526 1.556591 GCGTCGATGTGCTTGTGTGA 61.557 55.000 6.48 0.00 0.00 3.58
1839 3527 0.161658 CGTCGATGTGCTTGTGTGAC 59.838 55.000 0.00 0.00 0.00 3.67
1840 3528 0.161658 GTCGATGTGCTTGTGTGACG 59.838 55.000 0.00 0.00 0.00 4.35
1841 3529 0.943835 TCGATGTGCTTGTGTGACGG 60.944 55.000 0.00 0.00 0.00 4.79
1842 3530 1.207593 GATGTGCTTGTGTGACGGC 59.792 57.895 0.00 0.00 0.00 5.68
1843 3531 2.187599 GATGTGCTTGTGTGACGGCC 62.188 60.000 0.00 0.00 0.00 6.13
1844 3532 2.899838 GTGCTTGTGTGACGGCCA 60.900 61.111 2.24 0.00 0.00 5.36
1845 3533 2.124529 TGCTTGTGTGACGGCCAA 60.125 55.556 2.24 0.00 0.00 4.52
1846 3534 1.528076 TGCTTGTGTGACGGCCAAT 60.528 52.632 2.24 0.00 0.00 3.16
1847 3535 1.081242 GCTTGTGTGACGGCCAATG 60.081 57.895 2.24 0.00 0.00 2.82
1848 3536 1.081242 CTTGTGTGACGGCCAATGC 60.081 57.895 2.24 0.00 0.00 3.56
1849 3537 1.794151 CTTGTGTGACGGCCAATGCA 61.794 55.000 2.24 0.00 40.13 3.96
1850 3538 2.069465 TTGTGTGACGGCCAATGCAC 62.069 55.000 2.24 7.06 40.13 4.57
1851 3539 2.983030 TGTGACGGCCAATGCACC 60.983 61.111 2.24 0.00 40.13 5.01
1852 3540 2.672996 GTGACGGCCAATGCACCT 60.673 61.111 2.24 0.00 40.13 4.00
1853 3541 2.115052 TGACGGCCAATGCACCTT 59.885 55.556 2.24 0.00 40.13 3.50
1854 3542 1.971167 TGACGGCCAATGCACCTTC 60.971 57.895 2.24 0.00 40.13 3.46
1855 3543 1.675641 GACGGCCAATGCACCTTCT 60.676 57.895 2.24 0.00 40.13 2.85
1856 3544 1.648467 GACGGCCAATGCACCTTCTC 61.648 60.000 2.24 0.00 40.13 2.87
1857 3545 1.675310 CGGCCAATGCACCTTCTCA 60.675 57.895 2.24 0.00 40.13 3.27
1858 3546 1.885871 GGCCAATGCACCTTCTCAC 59.114 57.895 0.00 0.00 40.13 3.51
1859 3547 1.598701 GGCCAATGCACCTTCTCACC 61.599 60.000 0.00 0.00 40.13 4.02
1860 3548 0.610232 GCCAATGCACCTTCTCACCT 60.610 55.000 0.00 0.00 37.47 4.00
1861 3549 1.340017 GCCAATGCACCTTCTCACCTA 60.340 52.381 0.00 0.00 37.47 3.08
1862 3550 2.684927 GCCAATGCACCTTCTCACCTAT 60.685 50.000 0.00 0.00 37.47 2.57
1863 3551 3.624777 CCAATGCACCTTCTCACCTATT 58.375 45.455 0.00 0.00 0.00 1.73
1864 3552 3.379372 CCAATGCACCTTCTCACCTATTG 59.621 47.826 0.00 0.00 0.00 1.90
1865 3553 4.012374 CAATGCACCTTCTCACCTATTGT 58.988 43.478 0.00 0.00 0.00 2.71
1866 3554 3.788227 TGCACCTTCTCACCTATTGTT 57.212 42.857 0.00 0.00 0.00 2.83
1867 3555 4.901197 TGCACCTTCTCACCTATTGTTA 57.099 40.909 0.00 0.00 0.00 2.41
1868 3556 5.235850 TGCACCTTCTCACCTATTGTTAA 57.764 39.130 0.00 0.00 0.00 2.01
1869 3557 5.245531 TGCACCTTCTCACCTATTGTTAAG 58.754 41.667 0.00 0.00 0.00 1.85
1870 3558 4.636206 GCACCTTCTCACCTATTGTTAAGG 59.364 45.833 0.00 0.00 40.86 2.69
1871 3559 5.570844 GCACCTTCTCACCTATTGTTAAGGA 60.571 44.000 0.00 0.00 39.03 3.36
1872 3560 5.875359 CACCTTCTCACCTATTGTTAAGGAC 59.125 44.000 0.00 0.00 39.03 3.85
1873 3561 5.546499 ACCTTCTCACCTATTGTTAAGGACA 59.454 40.000 0.00 0.00 39.03 4.02
1874 3562 6.215636 ACCTTCTCACCTATTGTTAAGGACAT 59.784 38.462 0.00 0.00 39.03 3.06
1875 3563 7.112779 CCTTCTCACCTATTGTTAAGGACATT 58.887 38.462 0.00 0.00 39.03 2.71
1876 3564 7.066284 CCTTCTCACCTATTGTTAAGGACATTG 59.934 40.741 0.00 0.00 39.03 2.82
1877 3565 7.252612 TCTCACCTATTGTTAAGGACATTGA 57.747 36.000 0.00 0.00 38.26 2.57
1878 3566 7.685481 TCTCACCTATTGTTAAGGACATTGAA 58.315 34.615 0.00 0.00 38.26 2.69
1879 3567 8.328758 TCTCACCTATTGTTAAGGACATTGAAT 58.671 33.333 0.00 0.00 38.26 2.57
1880 3568 8.279970 TCACCTATTGTTAAGGACATTGAATG 57.720 34.615 3.16 3.16 38.26 2.67
1881 3569 7.339212 TCACCTATTGTTAAGGACATTGAATGG 59.661 37.037 10.27 0.00 38.26 3.16
1882 3570 7.122650 CACCTATTGTTAAGGACATTGAATGGT 59.877 37.037 10.27 0.00 38.26 3.55
1883 3571 7.673926 ACCTATTGTTAAGGACATTGAATGGTT 59.326 33.333 10.27 2.92 38.26 3.67
1884 3572 7.975616 CCTATTGTTAAGGACATTGAATGGTTG 59.024 37.037 10.27 0.00 38.26 3.77
1885 3573 6.968263 TTGTTAAGGACATTGAATGGTTGA 57.032 33.333 10.27 0.00 38.26 3.18
1886 3574 6.573664 TGTTAAGGACATTGAATGGTTGAG 57.426 37.500 10.27 0.00 32.00 3.02
1887 3575 5.476599 TGTTAAGGACATTGAATGGTTGAGG 59.523 40.000 10.27 0.00 32.00 3.86
1888 3576 2.450476 AGGACATTGAATGGTTGAGGC 58.550 47.619 10.27 0.00 33.60 4.70
1889 3577 2.042162 AGGACATTGAATGGTTGAGGCT 59.958 45.455 10.27 0.00 33.60 4.58
1890 3578 2.827921 GGACATTGAATGGTTGAGGCTT 59.172 45.455 10.27 0.00 33.60 4.35
1891 3579 3.259123 GGACATTGAATGGTTGAGGCTTT 59.741 43.478 10.27 0.00 33.60 3.51
1892 3580 4.488879 GACATTGAATGGTTGAGGCTTTC 58.511 43.478 10.27 0.00 33.60 2.62
1893 3581 3.896888 ACATTGAATGGTTGAGGCTTTCA 59.103 39.130 10.27 0.00 33.60 2.69
1894 3582 4.240096 CATTGAATGGTTGAGGCTTTCAC 58.760 43.478 0.00 0.00 34.94 3.18
1895 3583 1.879380 TGAATGGTTGAGGCTTTCACG 59.121 47.619 0.00 0.00 34.94 4.35
1896 3584 1.200020 GAATGGTTGAGGCTTTCACGG 59.800 52.381 0.00 0.00 34.94 4.94
1897 3585 0.110486 ATGGTTGAGGCTTTCACGGT 59.890 50.000 0.00 0.00 34.94 4.83
1898 3586 0.817634 TGGTTGAGGCTTTCACGGTG 60.818 55.000 0.56 0.56 34.94 4.94
1899 3587 1.282875 GTTGAGGCTTTCACGGTGC 59.717 57.895 2.51 0.00 34.94 5.01
1900 3588 1.148273 TTGAGGCTTTCACGGTGCT 59.852 52.632 2.51 0.00 34.94 4.40
1901 3589 0.884704 TTGAGGCTTTCACGGTGCTC 60.885 55.000 2.51 4.62 34.94 4.26
1902 3590 1.004440 GAGGCTTTCACGGTGCTCT 60.004 57.895 2.51 0.00 0.00 4.09
1903 3591 1.294659 GAGGCTTTCACGGTGCTCTG 61.295 60.000 2.51 0.00 0.00 3.35
1904 3592 1.598130 GGCTTTCACGGTGCTCTGT 60.598 57.895 2.51 0.00 0.00 3.41
1911 3599 3.814577 ACGGTGCTCTGTGATGTAC 57.185 52.632 0.00 0.00 0.00 2.90
1912 3600 0.246635 ACGGTGCTCTGTGATGTACC 59.753 55.000 0.00 0.00 35.95 3.34
1913 3601 0.246360 CGGTGCTCTGTGATGTACCA 59.754 55.000 0.00 0.00 38.57 3.25
1914 3602 1.737029 CGGTGCTCTGTGATGTACCAG 60.737 57.143 0.00 0.00 38.57 4.00
1915 3603 1.363744 GTGCTCTGTGATGTACCAGC 58.636 55.000 0.00 0.00 35.67 4.85
1916 3604 1.066573 GTGCTCTGTGATGTACCAGCT 60.067 52.381 0.00 0.00 35.96 4.24
1917 3605 1.066645 TGCTCTGTGATGTACCAGCTG 60.067 52.381 6.78 6.78 35.96 4.24
1918 3606 1.066573 GCTCTGTGATGTACCAGCTGT 60.067 52.381 13.81 3.45 33.50 4.40
1919 3607 2.613977 GCTCTGTGATGTACCAGCTGTT 60.614 50.000 13.81 0.00 33.50 3.16
1920 3608 2.998670 CTCTGTGATGTACCAGCTGTTG 59.001 50.000 13.81 0.00 0.00 3.33
1921 3609 2.368548 TCTGTGATGTACCAGCTGTTGT 59.631 45.455 13.81 6.92 0.00 3.32
1922 3610 2.738846 CTGTGATGTACCAGCTGTTGTC 59.261 50.000 13.81 4.12 0.00 3.18
1923 3611 2.368548 TGTGATGTACCAGCTGTTGTCT 59.631 45.455 13.81 0.00 0.00 3.41
1924 3612 2.738846 GTGATGTACCAGCTGTTGTCTG 59.261 50.000 13.81 0.00 0.00 3.51
1925 3613 2.368548 TGATGTACCAGCTGTTGTCTGT 59.631 45.455 13.81 4.58 0.00 3.41
1926 3614 2.526304 TGTACCAGCTGTTGTCTGTC 57.474 50.000 13.81 0.00 0.00 3.51
1927 3615 1.269569 TGTACCAGCTGTTGTCTGTCG 60.270 52.381 13.81 0.00 0.00 4.35
1928 3616 0.319555 TACCAGCTGTTGTCTGTCGC 60.320 55.000 13.81 0.00 0.00 5.19
1929 3617 2.661566 CCAGCTGTTGTCTGTCGCG 61.662 63.158 13.81 0.00 0.00 5.87
1930 3618 3.038417 AGCTGTTGTCTGTCGCGC 61.038 61.111 0.00 0.00 0.00 6.86
1931 3619 4.415501 GCTGTTGTCTGTCGCGCG 62.416 66.667 26.76 26.76 0.00 6.86
1932 3620 4.415501 CTGTTGTCTGTCGCGCGC 62.416 66.667 27.95 23.91 0.00 6.86
1954 3642 4.728534 CGATAGCCTAATCAGCACTAGAC 58.271 47.826 0.00 0.00 0.00 2.59
1955 3643 4.216472 CGATAGCCTAATCAGCACTAGACA 59.784 45.833 0.00 0.00 0.00 3.41
1956 3644 3.810310 AGCCTAATCAGCACTAGACAC 57.190 47.619 0.00 0.00 0.00 3.67
1957 3645 3.370104 AGCCTAATCAGCACTAGACACT 58.630 45.455 0.00 0.00 0.00 3.55
1958 3646 3.383185 AGCCTAATCAGCACTAGACACTC 59.617 47.826 0.00 0.00 0.00 3.51
1959 3647 3.793801 GCCTAATCAGCACTAGACACTCG 60.794 52.174 0.00 0.00 0.00 4.18
1960 3648 2.285827 AATCAGCACTAGACACTCGC 57.714 50.000 0.00 0.00 0.00 5.03
1961 3649 1.177401 ATCAGCACTAGACACTCGCA 58.823 50.000 0.00 0.00 0.00 5.10
1962 3650 1.177401 TCAGCACTAGACACTCGCAT 58.823 50.000 0.00 0.00 0.00 4.73
1963 3651 1.133216 TCAGCACTAGACACTCGCATC 59.867 52.381 0.00 0.00 0.00 3.91
1964 3652 1.133982 CAGCACTAGACACTCGCATCT 59.866 52.381 0.00 0.00 0.00 2.90
1965 3653 1.133982 AGCACTAGACACTCGCATCTG 59.866 52.381 0.00 0.00 0.00 2.90
1966 3654 1.554392 CACTAGACACTCGCATCTGC 58.446 55.000 0.00 0.00 37.78 4.26
1967 3655 1.135286 CACTAGACACTCGCATCTGCA 60.135 52.381 0.00 0.00 42.21 4.41
1968 3656 1.753649 ACTAGACACTCGCATCTGCAT 59.246 47.619 0.00 0.00 42.21 3.96
1969 3657 2.125685 CTAGACACTCGCATCTGCATG 58.874 52.381 2.72 0.00 42.21 4.06
1970 3658 0.533951 AGACACTCGCATCTGCATGA 59.466 50.000 0.00 0.00 42.21 3.07
1971 3659 0.649475 GACACTCGCATCTGCATGAC 59.351 55.000 0.00 0.00 42.21 3.06
1972 3660 0.742281 ACACTCGCATCTGCATGACC 60.742 55.000 0.00 0.00 42.21 4.02
1973 3661 0.461516 CACTCGCATCTGCATGACCT 60.462 55.000 0.00 0.00 42.21 3.85
1974 3662 1.114627 ACTCGCATCTGCATGACCTA 58.885 50.000 0.00 0.00 42.21 3.08
1975 3663 1.202463 ACTCGCATCTGCATGACCTAC 60.202 52.381 0.00 0.00 42.21 3.18
1976 3664 1.068281 CTCGCATCTGCATGACCTACT 59.932 52.381 0.00 0.00 42.21 2.57
1977 3665 2.294512 CTCGCATCTGCATGACCTACTA 59.705 50.000 0.00 0.00 42.21 1.82
1978 3666 2.893489 TCGCATCTGCATGACCTACTAT 59.107 45.455 0.00 0.00 42.21 2.12
1979 3667 3.321968 TCGCATCTGCATGACCTACTATT 59.678 43.478 0.00 0.00 42.21 1.73
1980 3668 3.677121 CGCATCTGCATGACCTACTATTC 59.323 47.826 0.00 0.00 42.21 1.75
1981 3669 4.560311 CGCATCTGCATGACCTACTATTCT 60.560 45.833 0.00 0.00 42.21 2.40
1982 3670 5.303971 GCATCTGCATGACCTACTATTCTT 58.696 41.667 0.00 0.00 41.59 2.52
1983 3671 5.762218 GCATCTGCATGACCTACTATTCTTT 59.238 40.000 0.00 0.00 41.59 2.52
1984 3672 6.293298 GCATCTGCATGACCTACTATTCTTTG 60.293 42.308 0.00 0.00 41.59 2.77
1985 3673 5.118990 TCTGCATGACCTACTATTCTTTGC 58.881 41.667 0.00 0.00 0.00 3.68
1986 3674 4.199310 TGCATGACCTACTATTCTTTGCC 58.801 43.478 0.00 0.00 0.00 4.52
1987 3675 4.080356 TGCATGACCTACTATTCTTTGCCT 60.080 41.667 0.00 0.00 0.00 4.75
1988 3676 4.513318 GCATGACCTACTATTCTTTGCCTC 59.487 45.833 0.00 0.00 0.00 4.70
1989 3677 5.686124 GCATGACCTACTATTCTTTGCCTCT 60.686 44.000 0.00 0.00 0.00 3.69
1990 3678 5.344743 TGACCTACTATTCTTTGCCTCTG 57.655 43.478 0.00 0.00 0.00 3.35
1991 3679 5.023452 TGACCTACTATTCTTTGCCTCTGA 58.977 41.667 0.00 0.00 0.00 3.27
1992 3680 5.663106 TGACCTACTATTCTTTGCCTCTGAT 59.337 40.000 0.00 0.00 0.00 2.90
1993 3681 6.156949 TGACCTACTATTCTTTGCCTCTGATT 59.843 38.462 0.00 0.00 0.00 2.57
1994 3682 6.963322 ACCTACTATTCTTTGCCTCTGATTT 58.037 36.000 0.00 0.00 0.00 2.17
1995 3683 6.825721 ACCTACTATTCTTTGCCTCTGATTTG 59.174 38.462 0.00 0.00 0.00 2.32
1996 3684 5.573337 ACTATTCTTTGCCTCTGATTTGC 57.427 39.130 0.00 0.00 0.00 3.68
1997 3685 3.881937 ATTCTTTGCCTCTGATTTGCC 57.118 42.857 0.00 0.00 0.00 4.52
1998 3686 1.549203 TCTTTGCCTCTGATTTGCCC 58.451 50.000 0.00 0.00 0.00 5.36
1999 3687 1.076024 TCTTTGCCTCTGATTTGCCCT 59.924 47.619 0.00 0.00 0.00 5.19
2000 3688 1.475682 CTTTGCCTCTGATTTGCCCTC 59.524 52.381 0.00 0.00 0.00 4.30
2001 3689 0.323725 TTGCCTCTGATTTGCCCTCC 60.324 55.000 0.00 0.00 0.00 4.30
2002 3690 1.304282 GCCTCTGATTTGCCCTCCA 59.696 57.895 0.00 0.00 0.00 3.86
2003 3691 0.106318 GCCTCTGATTTGCCCTCCAT 60.106 55.000 0.00 0.00 0.00 3.41
2004 3692 1.688772 CCTCTGATTTGCCCTCCATG 58.311 55.000 0.00 0.00 0.00 3.66
2005 3693 1.064166 CCTCTGATTTGCCCTCCATGT 60.064 52.381 0.00 0.00 0.00 3.21
2006 3694 2.295885 CTCTGATTTGCCCTCCATGTC 58.704 52.381 0.00 0.00 0.00 3.06
2007 3695 1.019673 CTGATTTGCCCTCCATGTCG 58.980 55.000 0.00 0.00 0.00 4.35
2008 3696 0.394216 TGATTTGCCCTCCATGTCGG 60.394 55.000 0.00 0.00 0.00 4.79
2009 3697 1.728490 GATTTGCCCTCCATGTCGGC 61.728 60.000 7.76 7.76 43.32 5.54
2010 3698 3.936772 TTTGCCCTCCATGTCGGCC 62.937 63.158 11.25 0.00 42.29 6.13
2012 3700 4.424711 GCCCTCCATGTCGGCCAA 62.425 66.667 2.24 0.00 36.63 4.52
2013 3701 2.438434 CCCTCCATGTCGGCCAAC 60.438 66.667 2.24 0.00 33.14 3.77
2014 3702 2.350895 CCTCCATGTCGGCCAACA 59.649 61.111 0.00 0.00 33.14 3.33
2015 3703 1.303236 CCTCCATGTCGGCCAACAA 60.303 57.895 0.00 0.00 31.81 2.83
2016 3704 0.893270 CCTCCATGTCGGCCAACAAA 60.893 55.000 0.00 0.00 31.81 2.83
2017 3705 0.958091 CTCCATGTCGGCCAACAAAA 59.042 50.000 0.00 0.00 31.81 2.44
2018 3706 0.671251 TCCATGTCGGCCAACAAAAC 59.329 50.000 0.00 0.00 31.81 2.43
2019 3707 0.387202 CCATGTCGGCCAACAAAACA 59.613 50.000 0.00 0.00 31.81 2.83
2020 3708 1.000731 CCATGTCGGCCAACAAAACAT 59.999 47.619 0.00 0.00 31.81 2.71
2021 3709 2.230025 CCATGTCGGCCAACAAAACATA 59.770 45.455 0.00 0.00 31.81 2.29
2022 3710 3.305676 CCATGTCGGCCAACAAAACATAA 60.306 43.478 0.00 0.00 31.81 1.90
2023 3711 3.357166 TGTCGGCCAACAAAACATAAC 57.643 42.857 2.24 0.00 0.00 1.89
2024 3712 2.688446 TGTCGGCCAACAAAACATAACA 59.312 40.909 2.24 0.00 0.00 2.41
2025 3713 3.319405 TGTCGGCCAACAAAACATAACAT 59.681 39.130 2.24 0.00 0.00 2.71
2026 3714 3.917985 GTCGGCCAACAAAACATAACATC 59.082 43.478 2.24 0.00 0.00 3.06
2027 3715 3.570125 TCGGCCAACAAAACATAACATCA 59.430 39.130 2.24 0.00 0.00 3.07
2028 3716 3.919804 CGGCCAACAAAACATAACATCAG 59.080 43.478 2.24 0.00 0.00 2.90
2029 3717 4.320861 CGGCCAACAAAACATAACATCAGA 60.321 41.667 2.24 0.00 0.00 3.27
2030 3718 4.923281 GGCCAACAAAACATAACATCAGAC 59.077 41.667 0.00 0.00 0.00 3.51
2031 3719 5.508825 GGCCAACAAAACATAACATCAGACA 60.509 40.000 0.00 0.00 0.00 3.41
2032 3720 5.402270 GCCAACAAAACATAACATCAGACAC 59.598 40.000 0.00 0.00 0.00 3.67
2033 3721 6.735694 GCCAACAAAACATAACATCAGACACT 60.736 38.462 0.00 0.00 0.00 3.55
2034 3722 7.521423 GCCAACAAAACATAACATCAGACACTA 60.521 37.037 0.00 0.00 0.00 2.74
2035 3723 7.803189 CCAACAAAACATAACATCAGACACTAC 59.197 37.037 0.00 0.00 0.00 2.73
2036 3724 7.435068 ACAAAACATAACATCAGACACTACC 57.565 36.000 0.00 0.00 0.00 3.18
2037 3725 6.147164 ACAAAACATAACATCAGACACTACCG 59.853 38.462 0.00 0.00 0.00 4.02
2038 3726 3.782046 ACATAACATCAGACACTACCGC 58.218 45.455 0.00 0.00 0.00 5.68
2039 3727 2.554806 TAACATCAGACACTACCGCG 57.445 50.000 0.00 0.00 0.00 6.46
2040 3728 0.736325 AACATCAGACACTACCGCGC 60.736 55.000 0.00 0.00 0.00 6.86
2041 3729 1.139734 CATCAGACACTACCGCGCT 59.860 57.895 5.56 0.00 0.00 5.92
2042 3730 0.458543 CATCAGACACTACCGCGCTT 60.459 55.000 5.56 0.00 0.00 4.68
2043 3731 0.458543 ATCAGACACTACCGCGCTTG 60.459 55.000 5.56 0.00 0.00 4.01
2044 3732 2.094659 CAGACACTACCGCGCTTGG 61.095 63.158 5.56 2.00 0.00 3.61
2045 3733 2.260434 GACACTACCGCGCTTGGA 59.740 61.111 5.56 0.00 0.00 3.53
2046 3734 1.805945 GACACTACCGCGCTTGGAG 60.806 63.158 5.56 5.00 0.00 3.86
2047 3735 2.209064 GACACTACCGCGCTTGGAGA 62.209 60.000 12.45 0.00 0.00 3.71
2048 3736 1.517257 CACTACCGCGCTTGGAGAG 60.517 63.158 12.45 9.09 0.00 3.20
2059 3747 2.591571 CTTGGAGAGCACATCGATGA 57.408 50.000 31.33 3.59 0.00 2.92
2060 3748 2.200067 CTTGGAGAGCACATCGATGAC 58.800 52.381 31.33 21.22 0.00 3.06
2061 3749 1.185315 TGGAGAGCACATCGATGACA 58.815 50.000 31.33 14.12 0.00 3.58
2062 3750 1.134995 TGGAGAGCACATCGATGACAC 60.135 52.381 31.33 19.44 0.00 3.67
2063 3751 1.134995 GGAGAGCACATCGATGACACA 60.135 52.381 31.33 0.00 0.00 3.72
2064 3752 2.191802 GAGAGCACATCGATGACACAG 58.808 52.381 31.33 15.28 0.00 3.66
2065 3753 0.649475 GAGCACATCGATGACACAGC 59.351 55.000 31.33 22.72 0.00 4.40
2066 3754 0.037046 AGCACATCGATGACACAGCA 60.037 50.000 31.33 0.00 0.00 4.41
2067 3755 0.798159 GCACATCGATGACACAGCAA 59.202 50.000 31.33 0.00 0.00 3.91
2068 3756 1.197492 GCACATCGATGACACAGCAAA 59.803 47.619 31.33 0.00 0.00 3.68
2069 3757 2.350676 GCACATCGATGACACAGCAAAA 60.351 45.455 31.33 0.00 0.00 2.44
2070 3758 3.228749 CACATCGATGACACAGCAAAAC 58.771 45.455 31.33 0.00 0.00 2.43
2071 3759 2.877786 ACATCGATGACACAGCAAAACA 59.122 40.909 31.33 0.00 0.00 2.83
2072 3760 3.228749 CATCGATGACACAGCAAAACAC 58.771 45.455 21.02 0.00 0.00 3.32
2073 3761 2.284190 TCGATGACACAGCAAAACACA 58.716 42.857 0.00 0.00 0.00 3.72
2074 3762 2.877786 TCGATGACACAGCAAAACACAT 59.122 40.909 0.00 0.00 0.00 3.21
2075 3763 3.314913 TCGATGACACAGCAAAACACATT 59.685 39.130 0.00 0.00 0.00 2.71
2076 3764 4.043750 CGATGACACAGCAAAACACATTT 58.956 39.130 0.00 0.00 0.00 2.32
2077 3765 5.008118 TCGATGACACAGCAAAACACATTTA 59.992 36.000 0.00 0.00 0.00 1.40
2078 3766 5.115472 CGATGACACAGCAAAACACATTTAC 59.885 40.000 0.00 0.00 0.00 2.01
2079 3767 5.574891 TGACACAGCAAAACACATTTACT 57.425 34.783 0.00 0.00 0.00 2.24
2080 3768 5.577835 TGACACAGCAAAACACATTTACTC 58.422 37.500 0.00 0.00 0.00 2.59
2081 3769 5.356751 TGACACAGCAAAACACATTTACTCT 59.643 36.000 0.00 0.00 0.00 3.24
2082 3770 5.581605 ACACAGCAAAACACATTTACTCTG 58.418 37.500 0.00 0.00 32.68 3.35
2083 3771 5.356751 ACACAGCAAAACACATTTACTCTGA 59.643 36.000 0.00 0.00 31.74 3.27
2084 3772 6.127758 ACACAGCAAAACACATTTACTCTGAA 60.128 34.615 0.00 0.00 31.74 3.02
2085 3773 6.751425 CACAGCAAAACACATTTACTCTGAAA 59.249 34.615 0.00 0.00 31.74 2.69
2086 3774 7.436080 CACAGCAAAACACATTTACTCTGAAAT 59.564 33.333 0.00 0.00 31.74 2.17
2110 3798 9.669353 AATGTATTATATTTGAGCAAAAGCTCG 57.331 29.630 12.25 0.00 39.49 5.03
2111 3799 8.208718 TGTATTATATTTGAGCAAAAGCTCGT 57.791 30.769 12.25 4.50 39.49 4.18
2112 3800 8.673711 TGTATTATATTTGAGCAAAAGCTCGTT 58.326 29.630 12.25 3.16 39.49 3.85
2115 3803 6.743575 ATATTTGAGCAAAAGCTCGTTACT 57.256 33.333 12.25 0.00 39.49 2.24
2116 3804 4.468095 TTTGAGCAAAAGCTCGTTACTC 57.532 40.909 12.25 0.00 39.49 2.59
2117 3805 3.106242 TGAGCAAAAGCTCGTTACTCA 57.894 42.857 12.25 8.33 39.49 3.41
2118 3806 2.800544 TGAGCAAAAGCTCGTTACTCAC 59.199 45.455 12.25 0.00 39.49 3.51
2119 3807 2.143925 AGCAAAAGCTCGTTACTCACC 58.856 47.619 0.00 0.00 0.00 4.02
2120 3808 1.136336 GCAAAAGCTCGTTACTCACCG 60.136 52.381 0.00 0.00 0.00 4.94
2121 3809 2.400399 CAAAAGCTCGTTACTCACCGA 58.600 47.619 0.00 0.00 0.00 4.69
2125 3813 3.786809 CTCGTTACTCACCGAGCAA 57.213 52.632 0.00 0.00 43.34 3.91
2126 3814 1.337821 CTCGTTACTCACCGAGCAAC 58.662 55.000 0.00 0.00 43.34 4.17
2127 3815 0.038892 TCGTTACTCACCGAGCAACC 60.039 55.000 2.33 0.00 33.70 3.77
2128 3816 0.319211 CGTTACTCACCGAGCAACCA 60.319 55.000 2.33 0.00 33.70 3.67
2129 3817 1.145803 GTTACTCACCGAGCAACCAC 58.854 55.000 0.00 0.00 31.75 4.16
2130 3818 0.753867 TTACTCACCGAGCAACCACA 59.246 50.000 0.00 0.00 32.04 4.17
2131 3819 0.973632 TACTCACCGAGCAACCACAT 59.026 50.000 0.00 0.00 32.04 3.21
2132 3820 0.973632 ACTCACCGAGCAACCACATA 59.026 50.000 0.00 0.00 32.04 2.29
2133 3821 1.337823 ACTCACCGAGCAACCACATAC 60.338 52.381 0.00 0.00 32.04 2.39
2134 3822 0.389296 TCACCGAGCAACCACATACG 60.389 55.000 0.00 0.00 0.00 3.06
2135 3823 0.389296 CACCGAGCAACCACATACGA 60.389 55.000 0.00 0.00 0.00 3.43
2136 3824 0.535335 ACCGAGCAACCACATACGAT 59.465 50.000 0.00 0.00 0.00 3.73
2137 3825 1.209128 CCGAGCAACCACATACGATC 58.791 55.000 0.00 0.00 0.00 3.69
2138 3826 1.202417 CCGAGCAACCACATACGATCT 60.202 52.381 0.00 0.00 0.00 2.75
2139 3827 2.120232 CGAGCAACCACATACGATCTC 58.880 52.381 0.00 0.00 0.00 2.75
2140 3828 2.474816 GAGCAACCACATACGATCTCC 58.525 52.381 0.00 0.00 0.00 3.71
2141 3829 2.101582 GAGCAACCACATACGATCTCCT 59.898 50.000 0.00 0.00 0.00 3.69
2142 3830 2.101582 AGCAACCACATACGATCTCCTC 59.898 50.000 0.00 0.00 0.00 3.71
2143 3831 2.803492 GCAACCACATACGATCTCCTCC 60.803 54.545 0.00 0.00 0.00 4.30
2144 3832 2.430694 CAACCACATACGATCTCCTCCA 59.569 50.000 0.00 0.00 0.00 3.86
2145 3833 2.964209 ACCACATACGATCTCCTCCAT 58.036 47.619 0.00 0.00 0.00 3.41
2146 3834 2.630098 ACCACATACGATCTCCTCCATG 59.370 50.000 0.00 0.00 0.00 3.66
2147 3835 2.611473 CCACATACGATCTCCTCCATGC 60.611 54.545 0.00 0.00 0.00 4.06
2148 3836 2.036346 CACATACGATCTCCTCCATGCA 59.964 50.000 0.00 0.00 0.00 3.96
2149 3837 2.902486 ACATACGATCTCCTCCATGCAT 59.098 45.455 0.00 0.00 0.00 3.96
2150 3838 3.326006 ACATACGATCTCCTCCATGCATT 59.674 43.478 0.00 0.00 0.00 3.56
2151 3839 4.202398 ACATACGATCTCCTCCATGCATTT 60.202 41.667 0.00 0.00 0.00 2.32
2152 3840 2.843701 ACGATCTCCTCCATGCATTTC 58.156 47.619 0.00 0.00 0.00 2.17
2153 3841 2.171237 ACGATCTCCTCCATGCATTTCA 59.829 45.455 0.00 0.00 0.00 2.69
2154 3842 3.181447 ACGATCTCCTCCATGCATTTCAT 60.181 43.478 0.00 0.00 35.31 2.57
2155 3843 3.436015 CGATCTCCTCCATGCATTTCATC 59.564 47.826 0.00 0.00 31.79 2.92
2156 3844 3.219176 TCTCCTCCATGCATTTCATCC 57.781 47.619 0.00 0.00 31.79 3.51
2157 3845 2.781757 TCTCCTCCATGCATTTCATCCT 59.218 45.455 0.00 0.00 31.79 3.24
2158 3846 3.147629 CTCCTCCATGCATTTCATCCTC 58.852 50.000 0.00 0.00 31.79 3.71
2159 3847 2.781757 TCCTCCATGCATTTCATCCTCT 59.218 45.455 0.00 0.00 31.79 3.69
2160 3848 3.147629 CCTCCATGCATTTCATCCTCTC 58.852 50.000 0.00 0.00 31.79 3.20
2161 3849 2.806818 CTCCATGCATTTCATCCTCTCG 59.193 50.000 0.00 0.00 31.79 4.04
2162 3850 1.878088 CCATGCATTTCATCCTCTCGG 59.122 52.381 0.00 0.00 31.79 4.63
2163 3851 1.266175 CATGCATTTCATCCTCTCGGC 59.734 52.381 0.00 0.00 31.79 5.54
2164 3852 0.252761 TGCATTTCATCCTCTCGGCA 59.747 50.000 0.00 0.00 0.00 5.69
2165 3853 1.134007 TGCATTTCATCCTCTCGGCAT 60.134 47.619 0.00 0.00 0.00 4.40
2166 3854 1.952296 GCATTTCATCCTCTCGGCATT 59.048 47.619 0.00 0.00 0.00 3.56
2167 3855 2.360165 GCATTTCATCCTCTCGGCATTT 59.640 45.455 0.00 0.00 0.00 2.32
2168 3856 3.565482 GCATTTCATCCTCTCGGCATTTA 59.435 43.478 0.00 0.00 0.00 1.40
2169 3857 4.320057 GCATTTCATCCTCTCGGCATTTAG 60.320 45.833 0.00 0.00 0.00 1.85
2170 3858 4.487714 TTTCATCCTCTCGGCATTTAGT 57.512 40.909 0.00 0.00 0.00 2.24
2171 3859 4.487714 TTCATCCTCTCGGCATTTAGTT 57.512 40.909 0.00 0.00 0.00 2.24
2172 3860 4.487714 TCATCCTCTCGGCATTTAGTTT 57.512 40.909 0.00 0.00 0.00 2.66
2173 3861 4.191544 TCATCCTCTCGGCATTTAGTTTG 58.808 43.478 0.00 0.00 0.00 2.93
2174 3862 2.356135 TCCTCTCGGCATTTAGTTTGC 58.644 47.619 0.00 0.00 39.41 3.68
2175 3863 2.027192 TCCTCTCGGCATTTAGTTTGCT 60.027 45.455 0.00 0.00 40.03 3.91
2176 3864 2.749621 CCTCTCGGCATTTAGTTTGCTT 59.250 45.455 0.00 0.00 40.03 3.91
2177 3865 3.191371 CCTCTCGGCATTTAGTTTGCTTT 59.809 43.478 0.00 0.00 40.03 3.51
2178 3866 4.321230 CCTCTCGGCATTTAGTTTGCTTTT 60.321 41.667 0.00 0.00 40.03 2.27
2179 3867 5.106317 CCTCTCGGCATTTAGTTTGCTTTTA 60.106 40.000 0.00 0.00 40.03 1.52
2180 3868 5.695818 TCTCGGCATTTAGTTTGCTTTTAC 58.304 37.500 0.00 0.00 40.03 2.01
2181 3869 4.800784 TCGGCATTTAGTTTGCTTTTACC 58.199 39.130 0.00 0.00 40.03 2.85
2182 3870 4.278669 TCGGCATTTAGTTTGCTTTTACCA 59.721 37.500 0.00 0.00 40.03 3.25
2183 3871 4.985409 CGGCATTTAGTTTGCTTTTACCAA 59.015 37.500 0.00 0.00 40.03 3.67
2184 3872 5.463724 CGGCATTTAGTTTGCTTTTACCAAA 59.536 36.000 0.00 0.00 40.03 3.28
2185 3873 6.147000 CGGCATTTAGTTTGCTTTTACCAAAT 59.853 34.615 0.00 0.00 40.03 2.32
2186 3874 7.518161 GGCATTTAGTTTGCTTTTACCAAATC 58.482 34.615 0.00 0.00 40.03 2.17
2187 3875 7.387673 GGCATTTAGTTTGCTTTTACCAAATCT 59.612 33.333 0.00 0.00 40.03 2.40
2188 3876 8.223100 GCATTTAGTTTGCTTTTACCAAATCTG 58.777 33.333 0.00 0.00 37.14 2.90
2189 3877 9.474920 CATTTAGTTTGCTTTTACCAAATCTGA 57.525 29.630 0.00 0.00 34.99 3.27
2193 3881 7.602753 AGTTTGCTTTTACCAAATCTGATACC 58.397 34.615 0.00 0.00 34.99 2.73
2194 3882 7.232534 AGTTTGCTTTTACCAAATCTGATACCA 59.767 33.333 0.00 0.00 34.99 3.25
2195 3883 7.531857 TTGCTTTTACCAAATCTGATACCAA 57.468 32.000 0.00 0.00 0.00 3.67
2196 3884 7.531857 TGCTTTTACCAAATCTGATACCAAA 57.468 32.000 0.00 0.00 0.00 3.28
2197 3885 7.601856 TGCTTTTACCAAATCTGATACCAAAG 58.398 34.615 0.00 0.00 0.00 2.77
2198 3886 7.450014 TGCTTTTACCAAATCTGATACCAAAGA 59.550 33.333 0.00 0.00 0.00 2.52
2199 3887 7.755373 GCTTTTACCAAATCTGATACCAAAGAC 59.245 37.037 0.00 0.00 0.00 3.01
2200 3888 8.698973 TTTTACCAAATCTGATACCAAAGACA 57.301 30.769 0.00 0.00 0.00 3.41
2201 3889 8.877864 TTTACCAAATCTGATACCAAAGACAT 57.122 30.769 0.00 0.00 0.00 3.06
2202 3890 8.506168 TTACCAAATCTGATACCAAAGACATC 57.494 34.615 0.00 0.00 0.00 3.06
2203 3891 5.888161 ACCAAATCTGATACCAAAGACATCC 59.112 40.000 0.00 0.00 0.00 3.51
2204 3892 5.300286 CCAAATCTGATACCAAAGACATCCC 59.700 44.000 0.00 0.00 0.00 3.85
2205 3893 5.715439 AATCTGATACCAAAGACATCCCA 57.285 39.130 0.00 0.00 0.00 4.37
2206 3894 5.715439 ATCTGATACCAAAGACATCCCAA 57.285 39.130 0.00 0.00 0.00 4.12
2207 3895 5.512942 TCTGATACCAAAGACATCCCAAA 57.487 39.130 0.00 0.00 0.00 3.28
2208 3896 5.886609 TCTGATACCAAAGACATCCCAAAA 58.113 37.500 0.00 0.00 0.00 2.44
2209 3897 6.310941 TCTGATACCAAAGACATCCCAAAAA 58.689 36.000 0.00 0.00 0.00 1.94
2210 3898 6.953520 TCTGATACCAAAGACATCCCAAAAAT 59.046 34.615 0.00 0.00 0.00 1.82
2211 3899 8.112822 TCTGATACCAAAGACATCCCAAAAATA 58.887 33.333 0.00 0.00 0.00 1.40
2212 3900 8.837099 TGATACCAAAGACATCCCAAAAATAT 57.163 30.769 0.00 0.00 0.00 1.28
2213 3901 9.928618 TGATACCAAAGACATCCCAAAAATATA 57.071 29.630 0.00 0.00 0.00 0.86
2217 3905 9.492730 ACCAAAGACATCCCAAAAATATAGATT 57.507 29.630 0.00 0.00 0.00 2.40
2218 3906 9.754382 CCAAAGACATCCCAAAAATATAGATTG 57.246 33.333 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.071605 ATCACGCAAAACTCTCGAGC 58.928 50.000 7.81 0.00 0.00 5.03
521 523 7.545362 AGCAATTGTCATCTCACATACTAAC 57.455 36.000 7.40 0.00 0.00 2.34
680 682 5.129815 TGTCATCATCTGGATCATCAGTTGA 59.870 40.000 12.36 12.36 43.39 3.18
951 2638 0.886490 CTGTTCGCTGCCTCTTTGGT 60.886 55.000 0.00 0.00 38.35 3.67
1092 2779 5.933617 TGCTCAGCTAAATCAGGTATCAAT 58.066 37.500 0.00 0.00 32.37 2.57
1795 3483 7.735586 CGCAAACACAAGATTTAATAAAGCAAC 59.264 33.333 3.76 0.00 0.00 4.17
1796 3484 7.436673 ACGCAAACACAAGATTTAATAAAGCAA 59.563 29.630 3.76 0.00 0.00 3.91
1797 3485 6.920758 ACGCAAACACAAGATTTAATAAAGCA 59.079 30.769 3.76 0.00 0.00 3.91
1798 3486 7.333288 ACGCAAACACAAGATTTAATAAAGC 57.667 32.000 0.00 0.00 0.00 3.51
1799 3487 7.532546 TCGACGCAAACACAAGATTTAATAAAG 59.467 33.333 0.00 0.00 0.00 1.85
1800 3488 7.353497 TCGACGCAAACACAAGATTTAATAAA 58.647 30.769 0.00 0.00 0.00 1.40
1801 3489 6.889494 TCGACGCAAACACAAGATTTAATAA 58.111 32.000 0.00 0.00 0.00 1.40
1802 3490 6.469139 TCGACGCAAACACAAGATTTAATA 57.531 33.333 0.00 0.00 0.00 0.98
1803 3491 5.351233 TCGACGCAAACACAAGATTTAAT 57.649 34.783 0.00 0.00 0.00 1.40
1804 3492 4.797693 TCGACGCAAACACAAGATTTAA 57.202 36.364 0.00 0.00 0.00 1.52
1805 3493 4.212425 ACATCGACGCAAACACAAGATTTA 59.788 37.500 0.00 0.00 0.00 1.40
1806 3494 3.003275 ACATCGACGCAAACACAAGATTT 59.997 39.130 0.00 0.00 0.00 2.17
1807 3495 2.548057 ACATCGACGCAAACACAAGATT 59.452 40.909 0.00 0.00 0.00 2.40
1808 3496 2.096268 CACATCGACGCAAACACAAGAT 60.096 45.455 0.00 0.00 0.00 2.40
1809 3497 1.260297 CACATCGACGCAAACACAAGA 59.740 47.619 0.00 0.00 0.00 3.02
1810 3498 1.662360 CACATCGACGCAAACACAAG 58.338 50.000 0.00 0.00 0.00 3.16
1811 3499 0.316607 GCACATCGACGCAAACACAA 60.317 50.000 0.00 0.00 0.00 3.33
1812 3500 1.157257 AGCACATCGACGCAAACACA 61.157 50.000 6.14 0.00 0.00 3.72
1813 3501 0.041312 AAGCACATCGACGCAAACAC 60.041 50.000 6.14 0.00 0.00 3.32
1814 3502 0.041400 CAAGCACATCGACGCAAACA 60.041 50.000 6.14 0.00 0.00 2.83
1815 3503 0.041312 ACAAGCACATCGACGCAAAC 60.041 50.000 6.14 0.00 0.00 2.93
1816 3504 0.041400 CACAAGCACATCGACGCAAA 60.041 50.000 6.14 0.00 0.00 3.68
1817 3505 1.157257 ACACAAGCACATCGACGCAA 61.157 50.000 6.14 0.00 0.00 4.85
1818 3506 1.594021 ACACAAGCACATCGACGCA 60.594 52.632 6.14 0.00 0.00 5.24
1819 3507 1.154599 CACACAAGCACATCGACGC 60.155 57.895 0.00 0.00 0.00 5.19
1820 3508 0.161658 GTCACACAAGCACATCGACG 59.838 55.000 0.00 0.00 0.00 5.12
1821 3509 0.161658 CGTCACACAAGCACATCGAC 59.838 55.000 0.00 0.00 0.00 4.20
1822 3510 0.943835 CCGTCACACAAGCACATCGA 60.944 55.000 0.00 0.00 0.00 3.59
1823 3511 1.492873 CCGTCACACAAGCACATCG 59.507 57.895 0.00 0.00 0.00 3.84
1824 3512 1.207593 GCCGTCACACAAGCACATC 59.792 57.895 0.00 0.00 0.00 3.06
1825 3513 2.260869 GGCCGTCACACAAGCACAT 61.261 57.895 0.00 0.00 0.00 3.21
1826 3514 2.899838 GGCCGTCACACAAGCACA 60.900 61.111 0.00 0.00 0.00 4.57
1827 3515 1.795170 ATTGGCCGTCACACAAGCAC 61.795 55.000 0.00 0.00 0.00 4.40
1828 3516 1.528076 ATTGGCCGTCACACAAGCA 60.528 52.632 0.00 0.00 0.00 3.91
1829 3517 1.081242 CATTGGCCGTCACACAAGC 60.081 57.895 0.00 0.00 0.00 4.01
1830 3518 1.081242 GCATTGGCCGTCACACAAG 60.081 57.895 0.00 0.00 0.00 3.16
1831 3519 1.825622 TGCATTGGCCGTCACACAA 60.826 52.632 0.00 0.00 40.13 3.33
1832 3520 2.203266 TGCATTGGCCGTCACACA 60.203 55.556 0.00 0.00 40.13 3.72
1833 3521 2.255252 GTGCATTGGCCGTCACAC 59.745 61.111 0.00 0.00 40.13 3.82
1834 3522 2.974692 AAGGTGCATTGGCCGTCACA 62.975 55.000 15.23 2.17 40.13 3.58
1835 3523 2.200170 GAAGGTGCATTGGCCGTCAC 62.200 60.000 0.00 2.99 40.13 3.67
1836 3524 1.971167 GAAGGTGCATTGGCCGTCA 60.971 57.895 0.00 0.00 40.13 4.35
1837 3525 1.648467 GAGAAGGTGCATTGGCCGTC 61.648 60.000 0.00 0.00 40.13 4.79
1838 3526 1.675641 GAGAAGGTGCATTGGCCGT 60.676 57.895 0.00 0.00 40.13 5.68
1839 3527 1.675310 TGAGAAGGTGCATTGGCCG 60.675 57.895 0.00 0.00 40.13 6.13
1840 3528 1.598701 GGTGAGAAGGTGCATTGGCC 61.599 60.000 0.00 0.00 40.13 5.36
1841 3529 0.610232 AGGTGAGAAGGTGCATTGGC 60.610 55.000 0.00 0.00 41.68 4.52
1842 3530 2.787473 TAGGTGAGAAGGTGCATTGG 57.213 50.000 0.00 0.00 0.00 3.16
1843 3531 4.012374 ACAATAGGTGAGAAGGTGCATTG 58.988 43.478 0.00 0.00 0.00 2.82
1844 3532 4.307032 ACAATAGGTGAGAAGGTGCATT 57.693 40.909 0.00 0.00 0.00 3.56
1845 3533 4.307032 AACAATAGGTGAGAAGGTGCAT 57.693 40.909 0.00 0.00 0.00 3.96
1846 3534 3.788227 AACAATAGGTGAGAAGGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
1847 3535 4.636206 CCTTAACAATAGGTGAGAAGGTGC 59.364 45.833 0.00 0.00 37.61 5.01
1848 3536 5.875359 GTCCTTAACAATAGGTGAGAAGGTG 59.125 44.000 0.00 0.00 40.55 4.00
1849 3537 5.546499 TGTCCTTAACAATAGGTGAGAAGGT 59.454 40.000 0.00 0.00 40.55 3.50
1850 3538 6.049955 TGTCCTTAACAATAGGTGAGAAGG 57.950 41.667 0.00 0.00 40.81 3.46
1851 3539 7.824289 TCAATGTCCTTAACAATAGGTGAGAAG 59.176 37.037 0.00 0.00 42.37 2.85
1852 3540 7.685481 TCAATGTCCTTAACAATAGGTGAGAA 58.315 34.615 0.00 0.00 42.37 2.87
1853 3541 7.252612 TCAATGTCCTTAACAATAGGTGAGA 57.747 36.000 0.00 0.00 42.37 3.27
1854 3542 7.921786 TTCAATGTCCTTAACAATAGGTGAG 57.078 36.000 0.00 0.00 42.37 3.51
1855 3543 7.339212 CCATTCAATGTCCTTAACAATAGGTGA 59.661 37.037 0.00 0.00 42.37 4.02
1856 3544 7.122650 ACCATTCAATGTCCTTAACAATAGGTG 59.877 37.037 0.00 0.00 42.37 4.00
1857 3545 7.182060 ACCATTCAATGTCCTTAACAATAGGT 58.818 34.615 0.00 0.00 42.37 3.08
1858 3546 7.645058 ACCATTCAATGTCCTTAACAATAGG 57.355 36.000 0.00 0.00 42.37 2.57
1859 3547 8.739039 TCAACCATTCAATGTCCTTAACAATAG 58.261 33.333 0.00 0.00 42.37 1.73
1860 3548 8.642935 TCAACCATTCAATGTCCTTAACAATA 57.357 30.769 0.00 0.00 42.37 1.90
1861 3549 7.309990 CCTCAACCATTCAATGTCCTTAACAAT 60.310 37.037 0.00 0.00 42.37 2.71
1862 3550 6.015519 CCTCAACCATTCAATGTCCTTAACAA 60.016 38.462 0.00 0.00 42.37 2.83
1863 3551 5.476599 CCTCAACCATTCAATGTCCTTAACA 59.523 40.000 0.00 0.00 43.51 2.41
1864 3552 5.622233 GCCTCAACCATTCAATGTCCTTAAC 60.622 44.000 0.00 0.00 0.00 2.01
1865 3553 4.462483 GCCTCAACCATTCAATGTCCTTAA 59.538 41.667 0.00 0.00 0.00 1.85
1866 3554 4.016444 GCCTCAACCATTCAATGTCCTTA 58.984 43.478 0.00 0.00 0.00 2.69
1867 3555 2.827921 GCCTCAACCATTCAATGTCCTT 59.172 45.455 0.00 0.00 0.00 3.36
1868 3556 2.042162 AGCCTCAACCATTCAATGTCCT 59.958 45.455 0.00 0.00 0.00 3.85
1869 3557 2.450476 AGCCTCAACCATTCAATGTCC 58.550 47.619 0.00 0.00 0.00 4.02
1870 3558 4.022068 TGAAAGCCTCAACCATTCAATGTC 60.022 41.667 0.00 0.00 0.00 3.06
1871 3559 3.896888 TGAAAGCCTCAACCATTCAATGT 59.103 39.130 0.00 0.00 0.00 2.71
1872 3560 4.240096 GTGAAAGCCTCAACCATTCAATG 58.760 43.478 0.00 0.00 35.22 2.82
1873 3561 3.057315 CGTGAAAGCCTCAACCATTCAAT 60.057 43.478 0.00 0.00 35.22 2.57
1874 3562 2.293122 CGTGAAAGCCTCAACCATTCAA 59.707 45.455 0.00 0.00 35.22 2.69
1875 3563 1.879380 CGTGAAAGCCTCAACCATTCA 59.121 47.619 0.00 0.00 35.22 2.57
1876 3564 1.200020 CCGTGAAAGCCTCAACCATTC 59.800 52.381 0.00 0.00 35.22 2.67
1877 3565 1.247567 CCGTGAAAGCCTCAACCATT 58.752 50.000 0.00 0.00 35.22 3.16
1878 3566 0.110486 ACCGTGAAAGCCTCAACCAT 59.890 50.000 0.00 0.00 35.22 3.55
1879 3567 0.817634 CACCGTGAAAGCCTCAACCA 60.818 55.000 0.00 0.00 35.22 3.67
1880 3568 1.949257 CACCGTGAAAGCCTCAACC 59.051 57.895 0.00 0.00 35.22 3.77
1881 3569 1.166531 AGCACCGTGAAAGCCTCAAC 61.167 55.000 1.65 0.00 35.22 3.18
1882 3570 0.884704 GAGCACCGTGAAAGCCTCAA 60.885 55.000 1.65 0.00 35.22 3.02
1883 3571 1.301716 GAGCACCGTGAAAGCCTCA 60.302 57.895 1.65 0.00 0.00 3.86
1884 3572 1.004440 AGAGCACCGTGAAAGCCTC 60.004 57.895 1.65 0.00 0.00 4.70
1885 3573 1.302033 CAGAGCACCGTGAAAGCCT 60.302 57.895 1.65 0.00 0.00 4.58
1886 3574 1.598130 ACAGAGCACCGTGAAAGCC 60.598 57.895 1.65 0.00 0.00 4.35
1887 3575 0.880278 TCACAGAGCACCGTGAAAGC 60.880 55.000 1.65 0.00 39.14 3.51
1888 3576 1.462283 CATCACAGAGCACCGTGAAAG 59.538 52.381 4.27 0.00 44.78 2.62
1889 3577 1.202639 ACATCACAGAGCACCGTGAAA 60.203 47.619 4.27 0.00 44.78 2.69
1890 3578 0.392706 ACATCACAGAGCACCGTGAA 59.607 50.000 4.27 0.00 44.78 3.18
1891 3579 1.067846 GTACATCACAGAGCACCGTGA 60.068 52.381 1.65 2.58 45.62 4.35
1892 3580 1.350193 GTACATCACAGAGCACCGTG 58.650 55.000 0.00 0.00 34.34 4.94
1893 3581 0.246635 GGTACATCACAGAGCACCGT 59.753 55.000 0.00 0.00 0.00 4.83
1894 3582 0.246360 TGGTACATCACAGAGCACCG 59.754 55.000 0.00 0.00 0.00 4.94
1895 3583 2.009042 GCTGGTACATCACAGAGCACC 61.009 57.143 0.00 0.00 38.20 5.01
1896 3584 1.066573 AGCTGGTACATCACAGAGCAC 60.067 52.381 0.00 0.00 38.20 4.40
1897 3585 1.066645 CAGCTGGTACATCACAGAGCA 60.067 52.381 5.57 0.00 38.20 4.26
1898 3586 1.066573 ACAGCTGGTACATCACAGAGC 60.067 52.381 19.93 0.00 38.20 4.09
1899 3587 2.998670 CAACAGCTGGTACATCACAGAG 59.001 50.000 19.93 0.00 38.20 3.35
1900 3588 2.368548 ACAACAGCTGGTACATCACAGA 59.631 45.455 19.93 0.00 38.20 3.41
1901 3589 2.738846 GACAACAGCTGGTACATCACAG 59.261 50.000 19.93 0.00 38.20 3.66
1902 3590 2.368548 AGACAACAGCTGGTACATCACA 59.631 45.455 19.93 0.00 38.20 3.58
1903 3591 2.738846 CAGACAACAGCTGGTACATCAC 59.261 50.000 19.93 0.00 38.20 3.06
1904 3592 2.368548 ACAGACAACAGCTGGTACATCA 59.631 45.455 19.93 0.00 38.20 3.07
1905 3593 2.996621 GACAGACAACAGCTGGTACATC 59.003 50.000 19.93 10.12 38.20 3.06
1906 3594 2.610479 CGACAGACAACAGCTGGTACAT 60.610 50.000 19.93 0.00 38.20 2.29
1907 3595 1.269569 CGACAGACAACAGCTGGTACA 60.270 52.381 19.93 0.00 37.69 2.90
1908 3596 1.419374 CGACAGACAACAGCTGGTAC 58.581 55.000 19.93 9.35 37.69 3.34
1909 3597 0.319555 GCGACAGACAACAGCTGGTA 60.320 55.000 19.93 0.00 37.69 3.25
1910 3598 1.595382 GCGACAGACAACAGCTGGT 60.595 57.895 19.93 9.19 37.69 4.00
1911 3599 2.661566 CGCGACAGACAACAGCTGG 61.662 63.158 19.93 3.21 37.69 4.85
1912 3600 2.849007 CGCGACAGACAACAGCTG 59.151 61.111 13.48 13.48 39.26 4.24
1913 3601 3.038417 GCGCGACAGACAACAGCT 61.038 61.111 12.10 0.00 0.00 4.24
1914 3602 4.415501 CGCGCGACAGACAACAGC 62.416 66.667 28.94 0.00 0.00 4.40
1915 3603 4.415501 GCGCGCGACAGACAACAG 62.416 66.667 37.18 0.00 0.00 3.16
1926 3614 2.778997 GATTAGGCTATCGCGCGCG 61.779 63.158 44.84 44.84 41.35 6.86
1927 3615 1.678269 CTGATTAGGCTATCGCGCGC 61.678 60.000 27.95 23.91 36.88 6.86
1928 3616 1.678269 GCTGATTAGGCTATCGCGCG 61.678 60.000 26.76 26.76 36.88 6.86
1929 3617 0.667487 TGCTGATTAGGCTATCGCGC 60.667 55.000 0.00 0.00 36.88 6.86
1930 3618 1.063806 GTGCTGATTAGGCTATCGCG 58.936 55.000 0.00 0.00 36.88 5.87
1931 3619 2.447244 AGTGCTGATTAGGCTATCGC 57.553 50.000 0.00 4.90 0.00 4.58
1932 3620 4.216472 TGTCTAGTGCTGATTAGGCTATCG 59.784 45.833 0.00 0.00 0.00 2.92
1933 3621 5.242838 AGTGTCTAGTGCTGATTAGGCTATC 59.757 44.000 0.00 0.00 0.00 2.08
1934 3622 5.144100 AGTGTCTAGTGCTGATTAGGCTAT 58.856 41.667 0.00 0.00 0.00 2.97
1935 3623 4.537751 AGTGTCTAGTGCTGATTAGGCTA 58.462 43.478 0.00 0.00 0.00 3.93
1936 3624 3.370104 AGTGTCTAGTGCTGATTAGGCT 58.630 45.455 0.00 0.00 0.00 4.58
1937 3625 3.712187 GAGTGTCTAGTGCTGATTAGGC 58.288 50.000 0.00 0.00 0.00 3.93
1938 3626 3.793801 GCGAGTGTCTAGTGCTGATTAGG 60.794 52.174 0.00 0.00 0.00 2.69
1939 3627 3.181496 TGCGAGTGTCTAGTGCTGATTAG 60.181 47.826 0.00 0.00 0.00 1.73
1940 3628 2.752903 TGCGAGTGTCTAGTGCTGATTA 59.247 45.455 0.00 0.00 0.00 1.75
1941 3629 1.546029 TGCGAGTGTCTAGTGCTGATT 59.454 47.619 0.00 0.00 0.00 2.57
1942 3630 1.177401 TGCGAGTGTCTAGTGCTGAT 58.823 50.000 0.00 0.00 0.00 2.90
1943 3631 1.133216 GATGCGAGTGTCTAGTGCTGA 59.867 52.381 0.00 0.00 0.00 4.26
1944 3632 1.133982 AGATGCGAGTGTCTAGTGCTG 59.866 52.381 0.00 0.00 0.00 4.41
1945 3633 1.133982 CAGATGCGAGTGTCTAGTGCT 59.866 52.381 0.00 0.00 0.00 4.40
1946 3634 1.554392 CAGATGCGAGTGTCTAGTGC 58.446 55.000 0.00 0.00 0.00 4.40
1947 3635 1.135286 TGCAGATGCGAGTGTCTAGTG 60.135 52.381 0.00 0.00 45.83 2.74
1948 3636 1.177401 TGCAGATGCGAGTGTCTAGT 58.823 50.000 0.00 0.00 45.83 2.57
1949 3637 2.125685 CATGCAGATGCGAGTGTCTAG 58.874 52.381 0.00 0.00 45.83 2.43
1950 3638 1.750778 TCATGCAGATGCGAGTGTCTA 59.249 47.619 0.00 0.00 45.83 2.59
1951 3639 0.533951 TCATGCAGATGCGAGTGTCT 59.466 50.000 0.00 0.00 45.83 3.41
1952 3640 0.649475 GTCATGCAGATGCGAGTGTC 59.351 55.000 0.00 0.00 45.83 3.67
1953 3641 0.742281 GGTCATGCAGATGCGAGTGT 60.742 55.000 0.00 0.00 45.83 3.55
1954 3642 0.461516 AGGTCATGCAGATGCGAGTG 60.462 55.000 0.00 0.00 45.83 3.51
1955 3643 1.114627 TAGGTCATGCAGATGCGAGT 58.885 50.000 0.00 0.00 45.83 4.18
1956 3644 1.068281 AGTAGGTCATGCAGATGCGAG 59.932 52.381 0.00 0.00 45.83 5.03
1957 3645 1.114627 AGTAGGTCATGCAGATGCGA 58.885 50.000 0.00 0.00 45.83 5.10
1958 3646 2.800881 TAGTAGGTCATGCAGATGCG 57.199 50.000 0.00 0.00 45.83 4.73
1959 3647 4.892433 AGAATAGTAGGTCATGCAGATGC 58.108 43.478 0.00 0.00 42.50 3.91
1960 3648 6.293298 GCAAAGAATAGTAGGTCATGCAGATG 60.293 42.308 0.00 0.00 32.34 2.90
1961 3649 5.762218 GCAAAGAATAGTAGGTCATGCAGAT 59.238 40.000 0.00 0.00 32.34 2.90
1962 3650 5.118990 GCAAAGAATAGTAGGTCATGCAGA 58.881 41.667 0.00 0.00 32.34 4.26
1963 3651 4.274459 GGCAAAGAATAGTAGGTCATGCAG 59.726 45.833 0.00 0.00 33.18 4.41
1964 3652 4.080356 AGGCAAAGAATAGTAGGTCATGCA 60.080 41.667 0.00 0.00 33.18 3.96
1965 3653 4.455606 AGGCAAAGAATAGTAGGTCATGC 58.544 43.478 0.00 0.00 0.00 4.06
1966 3654 5.757320 CAGAGGCAAAGAATAGTAGGTCATG 59.243 44.000 0.00 0.00 0.00 3.07
1967 3655 5.663106 TCAGAGGCAAAGAATAGTAGGTCAT 59.337 40.000 0.00 0.00 0.00 3.06
1968 3656 5.023452 TCAGAGGCAAAGAATAGTAGGTCA 58.977 41.667 0.00 0.00 0.00 4.02
1969 3657 5.599999 TCAGAGGCAAAGAATAGTAGGTC 57.400 43.478 0.00 0.00 0.00 3.85
1970 3658 6.567602 AATCAGAGGCAAAGAATAGTAGGT 57.432 37.500 0.00 0.00 0.00 3.08
1971 3659 6.238593 GCAAATCAGAGGCAAAGAATAGTAGG 60.239 42.308 0.00 0.00 0.00 3.18
1972 3660 6.238593 GGCAAATCAGAGGCAAAGAATAGTAG 60.239 42.308 0.00 0.00 0.00 2.57
1973 3661 5.590259 GGCAAATCAGAGGCAAAGAATAGTA 59.410 40.000 0.00 0.00 0.00 1.82
1974 3662 4.400567 GGCAAATCAGAGGCAAAGAATAGT 59.599 41.667 0.00 0.00 0.00 2.12
1975 3663 4.202090 GGGCAAATCAGAGGCAAAGAATAG 60.202 45.833 0.00 0.00 0.00 1.73
1976 3664 3.701040 GGGCAAATCAGAGGCAAAGAATA 59.299 43.478 0.00 0.00 0.00 1.75
1977 3665 2.498885 GGGCAAATCAGAGGCAAAGAAT 59.501 45.455 0.00 0.00 0.00 2.40
1978 3666 1.895131 GGGCAAATCAGAGGCAAAGAA 59.105 47.619 0.00 0.00 0.00 2.52
1979 3667 1.076024 AGGGCAAATCAGAGGCAAAGA 59.924 47.619 0.00 0.00 0.00 2.52
1980 3668 1.475682 GAGGGCAAATCAGAGGCAAAG 59.524 52.381 0.00 0.00 0.00 2.77
1981 3669 1.549203 GAGGGCAAATCAGAGGCAAA 58.451 50.000 0.00 0.00 0.00 3.68
1982 3670 0.323725 GGAGGGCAAATCAGAGGCAA 60.324 55.000 0.00 0.00 0.00 4.52
1983 3671 1.304282 GGAGGGCAAATCAGAGGCA 59.696 57.895 0.00 0.00 0.00 4.75
1984 3672 0.106318 ATGGAGGGCAAATCAGAGGC 60.106 55.000 0.00 0.00 0.00 4.70
1985 3673 1.064166 ACATGGAGGGCAAATCAGAGG 60.064 52.381 0.00 0.00 0.00 3.69
1986 3674 2.295885 GACATGGAGGGCAAATCAGAG 58.704 52.381 0.00 0.00 0.00 3.35
1987 3675 1.407299 CGACATGGAGGGCAAATCAGA 60.407 52.381 0.00 0.00 0.00 3.27
1988 3676 1.019673 CGACATGGAGGGCAAATCAG 58.980 55.000 0.00 0.00 0.00 2.90
1989 3677 0.394216 CCGACATGGAGGGCAAATCA 60.394 55.000 0.00 0.00 42.00 2.57
1990 3678 1.728490 GCCGACATGGAGGGCAAATC 61.728 60.000 16.25 0.00 46.13 2.17
1991 3679 1.754234 GCCGACATGGAGGGCAAAT 60.754 57.895 16.25 0.00 46.13 2.32
1992 3680 2.361104 GCCGACATGGAGGGCAAA 60.361 61.111 16.25 0.00 46.13 3.68
1996 3684 2.438434 GTTGGCCGACATGGAGGG 60.438 66.667 18.96 3.14 42.00 4.30
1997 3685 0.893270 TTTGTTGGCCGACATGGAGG 60.893 55.000 26.70 0.36 42.00 4.30
1998 3686 0.958091 TTTTGTTGGCCGACATGGAG 59.042 50.000 26.70 0.00 42.00 3.86
1999 3687 0.671251 GTTTTGTTGGCCGACATGGA 59.329 50.000 26.70 9.39 42.00 3.41
2000 3688 0.387202 TGTTTTGTTGGCCGACATGG 59.613 50.000 26.70 0.00 42.50 3.66
2001 3689 2.437200 ATGTTTTGTTGGCCGACATG 57.563 45.000 26.70 0.00 30.37 3.21
2002 3690 3.319405 TGTTATGTTTTGTTGGCCGACAT 59.681 39.130 26.70 13.71 35.36 3.06
2003 3691 2.688446 TGTTATGTTTTGTTGGCCGACA 59.312 40.909 22.64 22.64 0.00 4.35
2004 3692 3.357166 TGTTATGTTTTGTTGGCCGAC 57.643 42.857 17.01 17.01 0.00 4.79
2005 3693 3.570125 TGATGTTATGTTTTGTTGGCCGA 59.430 39.130 0.00 0.00 0.00 5.54
2006 3694 3.906998 TGATGTTATGTTTTGTTGGCCG 58.093 40.909 0.00 0.00 0.00 6.13
2007 3695 4.923281 GTCTGATGTTATGTTTTGTTGGCC 59.077 41.667 0.00 0.00 0.00 5.36
2008 3696 5.402270 GTGTCTGATGTTATGTTTTGTTGGC 59.598 40.000 0.00 0.00 0.00 4.52
2009 3697 6.738114 AGTGTCTGATGTTATGTTTTGTTGG 58.262 36.000 0.00 0.00 0.00 3.77
2010 3698 7.803189 GGTAGTGTCTGATGTTATGTTTTGTTG 59.197 37.037 0.00 0.00 0.00 3.33
2011 3699 7.307751 CGGTAGTGTCTGATGTTATGTTTTGTT 60.308 37.037 0.00 0.00 0.00 2.83
2012 3700 6.147164 CGGTAGTGTCTGATGTTATGTTTTGT 59.853 38.462 0.00 0.00 0.00 2.83
2013 3701 6.534059 CGGTAGTGTCTGATGTTATGTTTTG 58.466 40.000 0.00 0.00 0.00 2.44
2014 3702 5.121768 GCGGTAGTGTCTGATGTTATGTTTT 59.878 40.000 0.00 0.00 0.00 2.43
2015 3703 4.630069 GCGGTAGTGTCTGATGTTATGTTT 59.370 41.667 0.00 0.00 0.00 2.83
2016 3704 4.181578 GCGGTAGTGTCTGATGTTATGTT 58.818 43.478 0.00 0.00 0.00 2.71
2017 3705 3.733988 CGCGGTAGTGTCTGATGTTATGT 60.734 47.826 0.00 0.00 0.00 2.29
2018 3706 2.789339 CGCGGTAGTGTCTGATGTTATG 59.211 50.000 0.00 0.00 0.00 1.90
2019 3707 2.798499 GCGCGGTAGTGTCTGATGTTAT 60.798 50.000 8.83 0.00 0.00 1.89
2020 3708 1.468565 GCGCGGTAGTGTCTGATGTTA 60.469 52.381 8.83 0.00 0.00 2.41
2021 3709 0.736325 GCGCGGTAGTGTCTGATGTT 60.736 55.000 8.83 0.00 0.00 2.71
2022 3710 1.153823 GCGCGGTAGTGTCTGATGT 60.154 57.895 8.83 0.00 0.00 3.06
2023 3711 0.458543 AAGCGCGGTAGTGTCTGATG 60.459 55.000 12.91 0.00 0.00 3.07
2024 3712 0.458543 CAAGCGCGGTAGTGTCTGAT 60.459 55.000 12.91 0.00 0.00 2.90
2025 3713 1.080772 CAAGCGCGGTAGTGTCTGA 60.081 57.895 12.91 0.00 0.00 3.27
2026 3714 2.094659 CCAAGCGCGGTAGTGTCTG 61.095 63.158 12.91 4.60 0.00 3.51
2027 3715 2.214181 CTCCAAGCGCGGTAGTGTCT 62.214 60.000 12.91 0.00 0.00 3.41
2028 3716 1.805945 CTCCAAGCGCGGTAGTGTC 60.806 63.158 12.91 0.00 0.00 3.67
2029 3717 2.214181 CTCTCCAAGCGCGGTAGTGT 62.214 60.000 12.91 0.00 0.00 3.55
2030 3718 1.517257 CTCTCCAAGCGCGGTAGTG 60.517 63.158 12.91 7.20 0.00 2.74
2031 3719 2.885861 CTCTCCAAGCGCGGTAGT 59.114 61.111 12.91 0.00 0.00 2.73
2032 3720 2.583593 GCTCTCCAAGCGCGGTAG 60.584 66.667 12.91 5.59 42.21 3.18
2040 3728 2.200067 GTCATCGATGTGCTCTCCAAG 58.800 52.381 24.09 0.00 0.00 3.61
2041 3729 1.550072 TGTCATCGATGTGCTCTCCAA 59.450 47.619 24.09 0.00 0.00 3.53
2042 3730 1.134995 GTGTCATCGATGTGCTCTCCA 60.135 52.381 24.09 8.53 0.00 3.86
2043 3731 1.134995 TGTGTCATCGATGTGCTCTCC 60.135 52.381 24.09 7.86 0.00 3.71
2044 3732 2.191802 CTGTGTCATCGATGTGCTCTC 58.808 52.381 24.09 13.80 0.00 3.20
2045 3733 1.738365 GCTGTGTCATCGATGTGCTCT 60.738 52.381 24.09 0.00 0.00 4.09
2046 3734 0.649475 GCTGTGTCATCGATGTGCTC 59.351 55.000 24.09 17.78 0.00 4.26
2047 3735 0.037046 TGCTGTGTCATCGATGTGCT 60.037 50.000 24.09 0.00 0.00 4.40
2048 3736 0.798159 TTGCTGTGTCATCGATGTGC 59.202 50.000 24.09 19.44 0.00 4.57
2049 3737 3.228749 GTTTTGCTGTGTCATCGATGTG 58.771 45.455 24.09 11.67 0.00 3.21
2050 3738 2.877786 TGTTTTGCTGTGTCATCGATGT 59.122 40.909 24.09 0.00 0.00 3.06
2051 3739 3.228749 GTGTTTTGCTGTGTCATCGATG 58.771 45.455 19.61 19.61 0.00 3.84
2052 3740 2.877786 TGTGTTTTGCTGTGTCATCGAT 59.122 40.909 0.00 0.00 0.00 3.59
2053 3741 2.284190 TGTGTTTTGCTGTGTCATCGA 58.716 42.857 0.00 0.00 0.00 3.59
2054 3742 2.753989 TGTGTTTTGCTGTGTCATCG 57.246 45.000 0.00 0.00 0.00 3.84
2055 3743 6.208644 AGTAAATGTGTTTTGCTGTGTCATC 58.791 36.000 0.00 0.00 38.62 2.92
2056 3744 6.039717 AGAGTAAATGTGTTTTGCTGTGTCAT 59.960 34.615 0.00 0.00 39.94 3.06
2057 3745 5.356751 AGAGTAAATGTGTTTTGCTGTGTCA 59.643 36.000 0.00 0.00 39.94 3.58
2058 3746 5.682862 CAGAGTAAATGTGTTTTGCTGTGTC 59.317 40.000 5.54 0.00 42.53 3.67
2059 3747 5.356751 TCAGAGTAAATGTGTTTTGCTGTGT 59.643 36.000 11.14 0.00 45.47 3.72
2060 3748 5.820131 TCAGAGTAAATGTGTTTTGCTGTG 58.180 37.500 6.88 6.88 46.15 3.66
2061 3749 6.449635 TTCAGAGTAAATGTGTTTTGCTGT 57.550 33.333 0.00 0.00 39.94 4.40
2062 3750 7.780313 CATTTCAGAGTAAATGTGTTTTGCTG 58.220 34.615 0.00 0.00 39.94 4.41
2063 3751 7.935338 CATTTCAGAGTAAATGTGTTTTGCT 57.065 32.000 0.00 0.00 42.18 3.91
2101 3789 2.400399 TCGGTGAGTAACGAGCTTTTG 58.600 47.619 0.00 0.00 34.67 2.44
2102 3790 2.806608 TCGGTGAGTAACGAGCTTTT 57.193 45.000 0.00 0.00 34.67 2.27
2108 3796 3.484524 GTTGCTCGGTGAGTAACGA 57.515 52.632 11.10 0.00 42.98 3.85
2111 3799 0.753867 TGTGGTTGCTCGGTGAGTAA 59.246 50.000 0.00 0.00 32.29 2.24
2112 3800 0.973632 ATGTGGTTGCTCGGTGAGTA 59.026 50.000 0.00 0.00 31.39 2.59
2113 3801 0.973632 TATGTGGTTGCTCGGTGAGT 59.026 50.000 0.00 0.00 31.39 3.41
2114 3802 1.359848 GTATGTGGTTGCTCGGTGAG 58.640 55.000 0.00 0.00 0.00 3.51
2115 3803 0.389296 CGTATGTGGTTGCTCGGTGA 60.389 55.000 0.00 0.00 0.00 4.02
2116 3804 0.389296 TCGTATGTGGTTGCTCGGTG 60.389 55.000 0.00 0.00 0.00 4.94
2117 3805 0.535335 ATCGTATGTGGTTGCTCGGT 59.465 50.000 0.00 0.00 0.00 4.69
2118 3806 1.202417 AGATCGTATGTGGTTGCTCGG 60.202 52.381 0.00 0.00 0.00 4.63
2119 3807 2.120232 GAGATCGTATGTGGTTGCTCG 58.880 52.381 0.00 0.00 0.00 5.03
2120 3808 2.101582 AGGAGATCGTATGTGGTTGCTC 59.898 50.000 0.00 0.00 0.00 4.26
2121 3809 2.101582 GAGGAGATCGTATGTGGTTGCT 59.898 50.000 0.00 0.00 0.00 3.91
2122 3810 2.474816 GAGGAGATCGTATGTGGTTGC 58.525 52.381 0.00 0.00 0.00 4.17
2123 3811 2.430694 TGGAGGAGATCGTATGTGGTTG 59.569 50.000 0.00 0.00 0.00 3.77
2124 3812 2.747177 TGGAGGAGATCGTATGTGGTT 58.253 47.619 0.00 0.00 0.00 3.67
2125 3813 2.454336 TGGAGGAGATCGTATGTGGT 57.546 50.000 0.00 0.00 0.00 4.16
2126 3814 2.611473 GCATGGAGGAGATCGTATGTGG 60.611 54.545 0.00 0.00 0.00 4.17
2127 3815 2.036346 TGCATGGAGGAGATCGTATGTG 59.964 50.000 0.00 0.00 0.00 3.21
2128 3816 2.319844 TGCATGGAGGAGATCGTATGT 58.680 47.619 0.00 0.00 0.00 2.29
2129 3817 3.606595 ATGCATGGAGGAGATCGTATG 57.393 47.619 0.00 0.00 0.00 2.39
2130 3818 4.040829 TGAAATGCATGGAGGAGATCGTAT 59.959 41.667 0.00 0.00 0.00 3.06
2131 3819 3.387699 TGAAATGCATGGAGGAGATCGTA 59.612 43.478 0.00 0.00 0.00 3.43
2132 3820 2.171237 TGAAATGCATGGAGGAGATCGT 59.829 45.455 0.00 0.00 0.00 3.73
2133 3821 2.842457 TGAAATGCATGGAGGAGATCG 58.158 47.619 0.00 0.00 0.00 3.69
2134 3822 3.757493 GGATGAAATGCATGGAGGAGATC 59.243 47.826 0.00 0.00 37.34 2.75
2135 3823 3.398292 AGGATGAAATGCATGGAGGAGAT 59.602 43.478 0.00 0.00 36.98 2.75
2136 3824 2.781757 AGGATGAAATGCATGGAGGAGA 59.218 45.455 0.00 0.00 36.98 3.71
2137 3825 3.147629 GAGGATGAAATGCATGGAGGAG 58.852 50.000 0.00 0.00 36.98 3.69
2138 3826 2.781757 AGAGGATGAAATGCATGGAGGA 59.218 45.455 0.00 0.00 36.98 3.71
2139 3827 3.147629 GAGAGGATGAAATGCATGGAGG 58.852 50.000 0.00 0.00 36.98 4.30
2140 3828 2.806818 CGAGAGGATGAAATGCATGGAG 59.193 50.000 0.00 0.00 36.98 3.86
2141 3829 2.842457 CGAGAGGATGAAATGCATGGA 58.158 47.619 0.00 0.00 36.98 3.41
2156 3844 4.425577 AAAGCAAACTAAATGCCGAGAG 57.574 40.909 0.00 0.00 44.91 3.20
2157 3845 4.846779 AAAAGCAAACTAAATGCCGAGA 57.153 36.364 0.00 0.00 44.91 4.04
2158 3846 4.857037 GGTAAAAGCAAACTAAATGCCGAG 59.143 41.667 0.00 0.00 44.91 4.63
2159 3847 4.278669 TGGTAAAAGCAAACTAAATGCCGA 59.721 37.500 0.00 0.00 44.91 5.54
2160 3848 4.551388 TGGTAAAAGCAAACTAAATGCCG 58.449 39.130 0.00 0.00 44.91 5.69
2161 3849 6.852858 TTTGGTAAAAGCAAACTAAATGCC 57.147 33.333 0.43 0.00 44.91 4.40
2162 3850 8.223100 CAGATTTGGTAAAAGCAAACTAAATGC 58.777 33.333 6.43 0.00 46.54 3.56
2163 3851 9.474920 TCAGATTTGGTAAAAGCAAACTAAATG 57.525 29.630 6.43 2.98 46.54 2.32
2167 3855 8.736244 GGTATCAGATTTGGTAAAAGCAAACTA 58.264 33.333 6.43 0.00 46.54 2.24
2168 3856 7.232534 TGGTATCAGATTTGGTAAAAGCAAACT 59.767 33.333 6.43 4.33 46.54 2.66
2169 3857 7.375053 TGGTATCAGATTTGGTAAAAGCAAAC 58.625 34.615 6.43 2.41 46.54 2.93
2171 3859 7.531857 TTGGTATCAGATTTGGTAAAAGCAA 57.468 32.000 0.00 0.00 34.04 3.91
2172 3860 7.450014 TCTTTGGTATCAGATTTGGTAAAAGCA 59.550 33.333 0.00 0.00 34.04 3.91
2173 3861 7.755373 GTCTTTGGTATCAGATTTGGTAAAAGC 59.245 37.037 0.00 0.00 31.67 3.51
2174 3862 8.792633 TGTCTTTGGTATCAGATTTGGTAAAAG 58.207 33.333 0.00 0.00 0.00 2.27
2175 3863 8.698973 TGTCTTTGGTATCAGATTTGGTAAAA 57.301 30.769 0.00 0.00 0.00 1.52
2176 3864 8.877864 ATGTCTTTGGTATCAGATTTGGTAAA 57.122 30.769 0.00 0.00 0.00 2.01
2177 3865 7.556275 GGATGTCTTTGGTATCAGATTTGGTAA 59.444 37.037 0.00 0.00 0.00 2.85
2178 3866 7.054124 GGATGTCTTTGGTATCAGATTTGGTA 58.946 38.462 0.00 0.00 0.00 3.25
2179 3867 5.888161 GGATGTCTTTGGTATCAGATTTGGT 59.112 40.000 0.00 0.00 0.00 3.67
2180 3868 5.300286 GGGATGTCTTTGGTATCAGATTTGG 59.700 44.000 0.00 0.00 0.00 3.28
2181 3869 5.887598 TGGGATGTCTTTGGTATCAGATTTG 59.112 40.000 0.00 0.00 0.00 2.32
2182 3870 6.078456 TGGGATGTCTTTGGTATCAGATTT 57.922 37.500 0.00 0.00 0.00 2.17
2183 3871 5.715439 TGGGATGTCTTTGGTATCAGATT 57.285 39.130 0.00 0.00 0.00 2.40
2184 3872 5.715439 TTGGGATGTCTTTGGTATCAGAT 57.285 39.130 0.00 0.00 0.00 2.90
2185 3873 5.512942 TTTGGGATGTCTTTGGTATCAGA 57.487 39.130 0.00 0.00 0.00 3.27
2186 3874 6.588719 TTTTTGGGATGTCTTTGGTATCAG 57.411 37.500 0.00 0.00 0.00 2.90
2187 3875 8.837099 ATATTTTTGGGATGTCTTTGGTATCA 57.163 30.769 0.00 0.00 0.00 2.15
2191 3879 9.492730 AATCTATATTTTTGGGATGTCTTTGGT 57.507 29.630 0.00 0.00 0.00 3.67
2192 3880 9.754382 CAATCTATATTTTTGGGATGTCTTTGG 57.246 33.333 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.