Multiple sequence alignment - TraesCS3B01G523200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G523200 chr3B 100.000 5465 0 0 1 5465 765796246 765790782 0.000000e+00 10093
1 TraesCS3B01G523200 chr3B 96.441 3737 122 8 1737 5465 519806780 519810513 0.000000e+00 6154
2 TraesCS3B01G523200 chr3B 94.019 3745 188 17 1737 5465 690096851 690100575 0.000000e+00 5642
3 TraesCS3B01G523200 chr3B 93.522 849 50 2 327 1175 690096016 690096859 0.000000e+00 1258
4 TraesCS3B01G523200 chr3B 91.743 327 24 3 1 325 690095476 690095801 8.350000e-123 451
5 TraesCS3B01G523200 chr7B 96.708 3736 115 5 1737 5465 608315749 608312015 0.000000e+00 6211
6 TraesCS3B01G523200 chr7B 95.578 1176 51 1 1 1175 608316916 608315741 0.000000e+00 1882
7 TraesCS3B01G523200 chr7B 91.659 1031 63 10 4443 5465 99114059 99113044 0.000000e+00 1406
8 TraesCS3B01G523200 chr7B 92.588 850 61 2 327 1175 99117564 99116716 0.000000e+00 1219
9 TraesCS3B01G523200 chr7B 94.609 575 22 1 1169 1734 220836673 220836099 0.000000e+00 881
10 TraesCS3B01G523200 chr7B 94.231 572 24 1 1172 1734 358582972 358582401 0.000000e+00 865
11 TraesCS3B01G523200 chr7B 93.554 574 28 1 1172 1736 358901431 358902004 0.000000e+00 846
12 TraesCS3B01G523200 chr7B 89.124 331 33 3 1 328 99118106 99117776 5.100000e-110 409
13 TraesCS3B01G523200 chrUn 95.021 3736 172 9 1737 5465 70868602 70864874 0.000000e+00 5856
14 TraesCS3B01G523200 chrUn 93.367 1176 76 2 1 1175 70828433 70827259 0.000000e+00 1738
15 TraesCS3B01G523200 chrUn 93.216 1135 75 2 1 1134 70869745 70868612 0.000000e+00 1668
16 TraesCS3B01G523200 chrUn 92.430 251 15 1 5215 5465 70823915 70823669 6.730000e-94 355
17 TraesCS3B01G523200 chrUn 94.000 200 8 1 5266 5465 70834978 70834783 3.200000e-77 300
18 TraesCS3B01G523200 chr5B 93.036 3748 221 21 1737 5465 532920017 532923743 0.000000e+00 5439
19 TraesCS3B01G523200 chr5B 94.939 573 20 1 1171 1734 77986924 77987496 0.000000e+00 889
20 TraesCS3B01G523200 chr5B 94.921 571 20 1 1173 1734 120999652 120999082 0.000000e+00 885
21 TraesCS3B01G523200 chr5B 94.580 572 22 1 1173 1735 120761236 120761807 0.000000e+00 876
22 TraesCS3B01G523200 chr5B 94.396 571 23 1 1173 1734 431886608 431887178 0.000000e+00 869
23 TraesCS3B01G523200 chr5B 93.881 572 25 4 1172 1734 349297486 349298056 0.000000e+00 854
24 TraesCS3B01G523200 chr7A 92.935 3666 228 14 1737 5387 651079243 651082892 0.000000e+00 5306
25 TraesCS3B01G523200 chr7A 92.555 3667 234 20 1737 5387 62576310 62579953 0.000000e+00 5223
26 TraesCS3B01G523200 chr7A 91.686 854 58 8 327 1175 62575473 62576318 0.000000e+00 1171
27 TraesCS3B01G523200 chr3A 92.690 3666 234 18 1737 5387 730238119 730234473 0.000000e+00 5254
28 TraesCS3B01G523200 chr3A 92.610 3667 235 18 1737 5387 730406551 730402905 0.000000e+00 5238
29 TraesCS3B01G523200 chr3A 91.194 863 62 9 327 1184 730238957 730238104 0.000000e+00 1160
30 TraesCS3B01G523200 chr2A 91.464 2671 154 27 2824 5465 763152808 763150183 0.000000e+00 3602
31 TraesCS3B01G523200 chr2A 93.404 849 55 1 327 1175 763164705 763163858 0.000000e+00 1256
32 TraesCS3B01G523200 chr2A 90.634 331 28 3 1 328 763165240 763164910 2.340000e-118 436
33 TraesCS3B01G523200 chr2A 91.571 261 21 1 1 260 763167818 763167558 5.200000e-95 359
34 TraesCS3B01G523200 chr2D 91.981 848 61 4 328 1175 62006751 62007591 0.000000e+00 1182
35 TraesCS3B01G523200 chr1B 94.571 571 21 2 1173 1734 142696688 142697257 0.000000e+00 874
36 TraesCS3B01G523200 chr1B 94.396 571 22 2 1173 1734 142984549 142985118 0.000000e+00 869
37 TraesCS3B01G523200 chr1B 93.576 576 28 1 1173 1739 371094698 371094123 0.000000e+00 850
38 TraesCS3B01G523200 chr1B 92.282 596 36 2 1167 1753 167399459 167400053 0.000000e+00 837
39 TraesCS3B01G523200 chr1B 91.603 262 19 3 1 260 676868772 676868512 5.200000e-95 359
40 TraesCS3B01G523200 chr6B 94.396 571 23 7 1173 1734 694888059 694887489 0.000000e+00 869
41 TraesCS3B01G523200 chr2B 93.892 573 26 2 1171 1734 608722706 608722134 0.000000e+00 856
42 TraesCS3B01G523200 chr1A 93.391 575 29 1 1173 1738 139629298 139628724 0.000000e+00 843
43 TraesCS3B01G523200 chr1A 91.482 587 36 10 1159 1734 112779235 112778652 0.000000e+00 795
44 TraesCS3B01G523200 chr6A 92.469 571 34 4 1173 1734 92341237 92341807 0.000000e+00 808
45 TraesCS3B01G523200 chr6A 91.188 261 21 2 1 260 1371797 1372056 2.420000e-93 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G523200 chr3B 765790782 765796246 5464 True 10093.000000 10093 100.000000 1 5465 1 chr3B.!!$R1 5464
1 TraesCS3B01G523200 chr3B 519806780 519810513 3733 False 6154.000000 6154 96.441000 1737 5465 1 chr3B.!!$F1 3728
2 TraesCS3B01G523200 chr3B 690095476 690100575 5099 False 2450.333333 5642 93.094667 1 5465 3 chr3B.!!$F2 5464
3 TraesCS3B01G523200 chr7B 608312015 608316916 4901 True 4046.500000 6211 96.143000 1 5465 2 chr7B.!!$R4 5464
4 TraesCS3B01G523200 chr7B 99113044 99118106 5062 True 1011.333333 1406 91.123667 1 5465 3 chr7B.!!$R3 5464
5 TraesCS3B01G523200 chr7B 220836099 220836673 574 True 881.000000 881 94.609000 1169 1734 1 chr7B.!!$R1 565
6 TraesCS3B01G523200 chr7B 358582401 358582972 571 True 865.000000 865 94.231000 1172 1734 1 chr7B.!!$R2 562
7 TraesCS3B01G523200 chr7B 358901431 358902004 573 False 846.000000 846 93.554000 1172 1736 1 chr7B.!!$F1 564
8 TraesCS3B01G523200 chrUn 70864874 70869745 4871 True 3762.000000 5856 94.118500 1 5465 2 chrUn.!!$R3 5464
9 TraesCS3B01G523200 chrUn 70823669 70828433 4764 True 1046.500000 1738 92.898500 1 5465 2 chrUn.!!$R2 5464
10 TraesCS3B01G523200 chr5B 532920017 532923743 3726 False 5439.000000 5439 93.036000 1737 5465 1 chr5B.!!$F5 3728
11 TraesCS3B01G523200 chr5B 77986924 77987496 572 False 889.000000 889 94.939000 1171 1734 1 chr5B.!!$F1 563
12 TraesCS3B01G523200 chr5B 120999082 120999652 570 True 885.000000 885 94.921000 1173 1734 1 chr5B.!!$R1 561
13 TraesCS3B01G523200 chr5B 120761236 120761807 571 False 876.000000 876 94.580000 1173 1735 1 chr5B.!!$F2 562
14 TraesCS3B01G523200 chr5B 431886608 431887178 570 False 869.000000 869 94.396000 1173 1734 1 chr5B.!!$F4 561
15 TraesCS3B01G523200 chr5B 349297486 349298056 570 False 854.000000 854 93.881000 1172 1734 1 chr5B.!!$F3 562
16 TraesCS3B01G523200 chr7A 651079243 651082892 3649 False 5306.000000 5306 92.935000 1737 5387 1 chr7A.!!$F1 3650
17 TraesCS3B01G523200 chr7A 62575473 62579953 4480 False 3197.000000 5223 92.120500 327 5387 2 chr7A.!!$F2 5060
18 TraesCS3B01G523200 chr3A 730402905 730406551 3646 True 5238.000000 5238 92.610000 1737 5387 1 chr3A.!!$R1 3650
19 TraesCS3B01G523200 chr3A 730234473 730238957 4484 True 3207.000000 5254 91.942000 327 5387 2 chr3A.!!$R2 5060
20 TraesCS3B01G523200 chr2A 763150183 763152808 2625 True 3602.000000 3602 91.464000 2824 5465 1 chr2A.!!$R1 2641
21 TraesCS3B01G523200 chr2A 763163858 763167818 3960 True 683.666667 1256 91.869667 1 1175 3 chr2A.!!$R2 1174
22 TraesCS3B01G523200 chr2D 62006751 62007591 840 False 1182.000000 1182 91.981000 328 1175 1 chr2D.!!$F1 847
23 TraesCS3B01G523200 chr1B 142696688 142697257 569 False 874.000000 874 94.571000 1173 1734 1 chr1B.!!$F1 561
24 TraesCS3B01G523200 chr1B 142984549 142985118 569 False 869.000000 869 94.396000 1173 1734 1 chr1B.!!$F2 561
25 TraesCS3B01G523200 chr1B 371094123 371094698 575 True 850.000000 850 93.576000 1173 1739 1 chr1B.!!$R1 566
26 TraesCS3B01G523200 chr1B 167399459 167400053 594 False 837.000000 837 92.282000 1167 1753 1 chr1B.!!$F3 586
27 TraesCS3B01G523200 chr6B 694887489 694888059 570 True 869.000000 869 94.396000 1173 1734 1 chr6B.!!$R1 561
28 TraesCS3B01G523200 chr2B 608722134 608722706 572 True 856.000000 856 93.892000 1171 1734 1 chr2B.!!$R1 563
29 TraesCS3B01G523200 chr1A 139628724 139629298 574 True 843.000000 843 93.391000 1173 1738 1 chr1A.!!$R2 565
30 TraesCS3B01G523200 chr1A 112778652 112779235 583 True 795.000000 795 91.482000 1159 1734 1 chr1A.!!$R1 575
31 TraesCS3B01G523200 chr6A 92341237 92341807 570 False 808.000000 808 92.469000 1173 1734 1 chr6A.!!$F2 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 2708 0.250124 ACGCCCGATCAGTGTTTTCA 60.250 50.000 0.0 0.0 0.00 2.69 F
237 2817 1.204704 GCATGTGGAAAAGTTAGGGGC 59.795 52.381 0.0 0.0 0.00 5.80 F
1627 4462 0.250727 CCCAACCCGACTGTTCATGT 60.251 55.000 0.0 0.0 0.00 3.21 F
2680 5527 2.911723 TCGTGTTTCTTTTGTGTTTGCG 59.088 40.909 0.0 0.0 0.00 4.85 F
4242 7096 2.494059 ACGAGTACAAGCAAGTGCATT 58.506 42.857 6.0 0.0 45.16 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 3992 0.035439 CCGTTGCCATCCCTAGTTGT 60.035 55.000 0.00 0.0 0.00 3.32 R
1632 4467 2.057140 CCCATGGGTCTGTGGATATGA 58.943 52.381 23.93 0.0 37.72 2.15 R
3622 6475 1.402259 CACGGTGTTGCAGGTGTTTAA 59.598 47.619 0.00 0.0 0.00 1.52 R
4357 7211 3.310774 CGTGGCCTTGACTCATTAATCTG 59.689 47.826 3.32 0.0 0.00 2.90 R
5167 8062 1.469251 GCTTATGAGAAGGCGACGACA 60.469 52.381 2.19 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.314647 CGCACGAAACGTCACCCAT 61.315 57.895 0.00 0.00 38.32 4.00
35 36 3.004171 CGAAACGTCACCCATATTTGGA 58.996 45.455 3.41 0.00 46.92 3.53
37 38 4.436852 CGAAACGTCACCCATATTTGGAAG 60.437 45.833 3.41 0.00 46.92 3.46
44 45 2.311542 ACCCATATTTGGAAGGCAGTGA 59.688 45.455 3.41 0.00 46.92 3.41
68 69 2.006415 CCCATCTTAGGGCCCCACA 61.006 63.158 21.43 0.00 43.10 4.17
87 88 5.098893 CCACACAAAAGTTGAACGAATTCA 58.901 37.500 6.22 0.00 43.28 2.57
129 2708 0.250124 ACGCCCGATCAGTGTTTTCA 60.250 50.000 0.00 0.00 0.00 2.69
219 2798 4.783621 GCCCTGCCGATGAGTGCA 62.784 66.667 0.00 0.00 35.86 4.57
237 2817 1.204704 GCATGTGGAAAAGTTAGGGGC 59.795 52.381 0.00 0.00 0.00 5.80
481 3277 2.437716 CCACGCCGCCATTACCTT 60.438 61.111 0.00 0.00 0.00 3.50
482 3278 2.043980 CCACGCCGCCATTACCTTT 61.044 57.895 0.00 0.00 0.00 3.11
903 3705 2.497675 AGATGTGTACTGCTCGGTTGAT 59.502 45.455 0.00 0.00 0.00 2.57
1107 3909 8.261492 ACATCAGTGTTCTTAATGAAGATGTC 57.739 34.615 0.00 0.00 40.06 3.06
1148 3950 3.490933 CGTAACGAGGGTGATGATGTCAT 60.491 47.826 0.00 0.00 39.48 3.06
1150 3952 4.753516 AACGAGGGTGATGATGTCATTA 57.246 40.909 0.00 0.00 39.48 1.90
1166 3991 5.430886 TGTCATTAGCATGATAGCAACAGT 58.569 37.500 0.00 0.00 41.64 3.55
1167 3992 6.581712 TGTCATTAGCATGATAGCAACAGTA 58.418 36.000 0.00 0.00 41.64 2.74
1184 4009 3.270877 CAGTACAACTAGGGATGGCAAC 58.729 50.000 0.00 0.00 0.00 4.17
1231 4056 2.044215 TGGTCCAAATCCAACCCATGAT 59.956 45.455 0.00 0.00 31.78 2.45
1461 4287 3.921021 CGATGAGTCCTTAAGTGTGACAC 59.079 47.826 7.83 7.83 34.10 3.67
1520 4355 1.266160 TGCCTGCCATTTCCCATTGG 61.266 55.000 0.00 0.00 36.03 3.16
1627 4462 0.250727 CCCAACCCGACTGTTCATGT 60.251 55.000 0.00 0.00 0.00 3.21
1632 4467 3.695830 ACCCGACTGTTCATGTGTATT 57.304 42.857 0.00 0.00 0.00 1.89
1726 4561 5.456779 TCCAGATCCATGGATAAAATTGCA 58.543 37.500 27.38 4.88 44.56 4.08
1792 4629 3.418684 TCTAGACAAAAGAACAGGCCC 57.581 47.619 0.00 0.00 0.00 5.80
1812 4649 3.504906 CCCAATCCTCATCGATGATTTGG 59.495 47.826 32.78 32.78 38.99 3.28
2148 4985 9.203421 CTATGTGTCTGACTAATTGTGTTTACA 57.797 33.333 9.51 0.84 34.31 2.41
2238 5075 6.588204 TCGTGAATACCCACTAATGCTTAAT 58.412 36.000 0.00 0.00 35.02 1.40
2569 5416 5.983118 CCGTGTGATGACATACATAAAGCTA 59.017 40.000 0.00 0.00 39.56 3.32
2680 5527 2.911723 TCGTGTTTCTTTTGTGTTTGCG 59.088 40.909 0.00 0.00 0.00 4.85
2803 5650 4.265073 GAGAATGGCCAGTACAAGTCATT 58.735 43.478 13.05 13.03 0.00 2.57
2941 5788 4.081087 GGGTAAAGGTGAAGCTACTGATCA 60.081 45.833 0.00 0.00 0.00 2.92
3004 5852 6.581370 CATCAACTGTACGTACAAAAGACTG 58.419 40.000 27.16 16.62 35.50 3.51
3012 5860 5.019785 ACGTACAAAAGACTGTCCTTCTT 57.980 39.130 3.76 0.00 34.66 2.52
3519 6371 3.566322 TGTCCTCACGTTTAAATGGTTGG 59.434 43.478 11.98 9.62 0.00 3.77
3632 6485 8.929827 TCATCAATGCATATTTTAAACACCTG 57.070 30.769 0.00 0.00 0.00 4.00
3895 6748 6.698380 ACTATGTAGGCGTATTTTCCTATGG 58.302 40.000 0.00 0.00 37.30 2.74
4009 6862 7.275888 AGCCAAAGAATTCGCAATATGATTA 57.724 32.000 0.00 0.00 0.00 1.75
4242 7096 2.494059 ACGAGTACAAGCAAGTGCATT 58.506 42.857 6.00 0.00 45.16 3.56
4255 7109 6.516718 AGCAAGTGCATTCTATATCGTAAGT 58.483 36.000 6.00 0.00 45.16 2.24
4357 7211 4.321230 GGACACATGAATTTGACCAGGAAC 60.321 45.833 0.00 0.00 0.00 3.62
5052 7946 2.733671 GGGTCTTAAACGACGCGCC 61.734 63.158 5.73 0.00 37.17 6.53
5162 8057 3.054878 GACGTGCCGATCGGTTTATATT 58.945 45.455 33.33 12.94 37.65 1.28
5167 8062 2.611224 GCCGATCGGTTTATATTCCCGT 60.611 50.000 33.33 0.00 42.30 5.28
5234 8129 4.690719 CCGCCCTGTTGTACGCCA 62.691 66.667 0.00 0.00 0.00 5.69
5237 8132 3.051392 GCCCTGTTGTACGCCATGC 62.051 63.158 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.877097 TGCTCACTGCCTTCCAAATA 57.123 45.000 0.00 0.00 42.00 1.40
68 69 6.090223 GGTGTTTGAATTCGTTCAACTTTTGT 59.910 34.615 0.04 0.00 40.29 2.83
87 88 1.073768 GCAACGTGCGTTTGGTGTTT 61.074 50.000 7.27 0.00 36.00 2.83
117 2696 3.376859 TGAAACGCACTGAAAACACTGAT 59.623 39.130 0.00 0.00 0.00 2.90
144 2723 6.094881 CACCGTATGAATTTCCTATGGTTGTT 59.905 38.462 17.91 0.92 35.55 2.83
146 2725 5.505654 GCACCGTATGAATTTCCTATGGTTG 60.506 44.000 17.91 14.91 35.55 3.77
219 2798 1.273041 GGGCCCCTAACTTTTCCACAT 60.273 52.381 12.23 0.00 0.00 3.21
237 2817 0.323629 TTTCTTACTCAGCCGGTGGG 59.676 55.000 1.90 2.43 0.00 4.61
325 3121 7.660112 ACATGCATTCTACTTTGACATTTCAA 58.340 30.769 0.00 0.00 40.14 2.69
481 3277 2.123180 TTAGGCGGTCCTGGGGAA 59.877 61.111 0.00 0.00 44.08 3.97
482 3278 2.686106 GTTAGGCGGTCCTGGGGA 60.686 66.667 0.00 0.00 44.08 4.81
612 3413 0.532573 GGACTGAGATCCAAGTCGCA 59.467 55.000 15.57 0.00 38.77 5.10
903 3705 1.529226 CCACCAATTCGCACCACTTA 58.471 50.000 0.00 0.00 0.00 2.24
1107 3909 4.436242 ACGTAGCCCGAATATGTCATAG 57.564 45.455 0.00 0.00 40.70 2.23
1148 3950 6.406370 AGTTGTACTGTTGCTATCATGCTAA 58.594 36.000 0.00 0.00 0.00 3.09
1150 3952 4.836825 AGTTGTACTGTTGCTATCATGCT 58.163 39.130 0.00 0.00 0.00 3.79
1166 3991 1.208535 CCGTTGCCATCCCTAGTTGTA 59.791 52.381 0.00 0.00 0.00 2.41
1167 3992 0.035439 CCGTTGCCATCCCTAGTTGT 60.035 55.000 0.00 0.00 0.00 3.32
1231 4056 4.425772 TGGACAAAGAGTAGGAAGATGGA 58.574 43.478 0.00 0.00 0.00 3.41
1461 4287 7.547370 GCCATAAGCTATATTCAACCTCTAGTG 59.453 40.741 0.00 0.00 38.99 2.74
1520 4355 3.670991 CAGTGACAGTAGAAAGAGCGAAC 59.329 47.826 0.00 0.00 0.00 3.95
1627 4462 5.221904 CCATGGGTCTGTGGATATGAATACA 60.222 44.000 2.85 0.00 37.72 2.29
1632 4467 2.057140 CCCATGGGTCTGTGGATATGA 58.943 52.381 23.93 0.00 37.72 2.15
1689 4524 4.202934 TGGATCTGGATACCCATGGATACT 60.203 45.833 15.22 0.00 42.59 2.12
1726 4561 7.149202 TGGCATCTAGTTGTAATTAGGGATT 57.851 36.000 2.85 0.00 0.00 3.01
1792 4629 6.866010 TTACCAAATCATCGATGAGGATTG 57.134 37.500 29.17 28.34 41.26 2.67
2157 4994 9.740710 GGCTCAACTTTTTCCCAGTATATATAT 57.259 33.333 0.00 0.00 0.00 0.86
2238 5075 1.228429 CCCTTCCGTTTCTGGCCAA 60.228 57.895 7.01 0.00 0.00 4.52
2409 5248 3.573110 ACCTTAGCACGTCTGTACTCTTT 59.427 43.478 0.00 0.00 0.00 2.52
2569 5416 8.265764 GGTATATTTAGAACCTCCTTGTGAAGT 58.734 37.037 0.00 0.00 0.00 3.01
2680 5527 4.770010 TGTTCAACCTTTCCATTACCATCC 59.230 41.667 0.00 0.00 0.00 3.51
3004 5852 1.520494 GGTTCGGGACAAAGAAGGAC 58.480 55.000 0.00 0.00 0.00 3.85
3012 5860 4.323477 CTGCGGGGTTCGGGACAA 62.323 66.667 0.00 0.00 39.69 3.18
3519 6371 3.099267 ACTCATACTTACAGCGCCATC 57.901 47.619 2.29 0.00 0.00 3.51
3622 6475 1.402259 CACGGTGTTGCAGGTGTTTAA 59.598 47.619 0.00 0.00 0.00 1.52
3632 6485 3.347958 TCAGAAAAATCACGGTGTTGC 57.652 42.857 8.17 0.00 0.00 4.17
3762 6615 6.950842 ACTCATCCATTACTCTTGTGATGAA 58.049 36.000 0.00 0.00 41.09 2.57
4242 7096 8.630037 ACATGTGTGATCAACTTACGATATAGA 58.370 33.333 0.00 0.00 0.00 1.98
4255 7109 6.207221 ACTCTGCAATAAACATGTGTGATCAA 59.793 34.615 0.00 0.00 0.00 2.57
4357 7211 3.310774 CGTGGCCTTGACTCATTAATCTG 59.689 47.826 3.32 0.00 0.00 2.90
4553 7410 5.056807 CGTGAAAAATTGTCGAAATCTGTCG 59.943 40.000 0.00 0.00 42.48 4.35
4737 7594 0.320683 CATCACGCCAAGTCAGGACA 60.321 55.000 1.84 0.00 0.00 4.02
4960 7817 3.360956 GACGTATTCCACCGGGCGT 62.361 63.158 6.32 4.36 35.20 5.68
5162 8057 4.047059 GAAGGCGACGACACGGGA 62.047 66.667 2.19 0.00 0.00 5.14
5167 8062 1.469251 GCTTATGAGAAGGCGACGACA 60.469 52.381 2.19 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.