Multiple sequence alignment - TraesCS3B01G522400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G522400 | chr3B | 100.000 | 4894 | 0 | 0 | 1 | 4894 | 765546922 | 765551815 | 0.000000e+00 | 9038.0 |
1 | TraesCS3B01G522400 | chr3B | 83.802 | 2099 | 304 | 29 | 2160 | 4242 | 765623478 | 765625556 | 0.000000e+00 | 1960.0 |
2 | TraesCS3B01G522400 | chr3B | 82.258 | 2046 | 321 | 33 | 2250 | 4270 | 765928465 | 765930493 | 0.000000e+00 | 1729.0 |
3 | TraesCS3B01G522400 | chr3B | 86.716 | 1227 | 144 | 12 | 699 | 1913 | 765667905 | 765669124 | 0.000000e+00 | 1345.0 |
4 | TraesCS3B01G522400 | chr3B | 88.439 | 1038 | 114 | 5 | 873 | 1906 | 765621832 | 765622867 | 0.000000e+00 | 1247.0 |
5 | TraesCS3B01G522400 | chr3B | 88.506 | 957 | 106 | 4 | 889 | 1843 | 765656634 | 765657588 | 0.000000e+00 | 1155.0 |
6 | TraesCS3B01G522400 | chr3B | 84.541 | 207 | 23 | 2 | 1904 | 2101 | 765669983 | 765670189 | 3.860000e-46 | 196.0 |
7 | TraesCS3B01G522400 | chr3B | 81.448 | 221 | 30 | 4 | 1904 | 2115 | 765623269 | 765623487 | 2.340000e-38 | 171.0 |
8 | TraesCS3B01G522400 | chr3B | 80.556 | 216 | 29 | 6 | 4685 | 4894 | 765599820 | 765600028 | 2.360000e-33 | 154.0 |
9 | TraesCS3B01G522400 | chr3B | 78.241 | 216 | 32 | 7 | 4684 | 4893 | 765678123 | 765678329 | 1.850000e-24 | 124.0 |
10 | TraesCS3B01G522400 | chr3A | 92.715 | 2471 | 139 | 17 | 2159 | 4605 | 710838126 | 710840579 | 0.000000e+00 | 3528.0 |
11 | TraesCS3B01G522400 | chr3A | 95.145 | 1730 | 72 | 4 | 385 | 2103 | 710836396 | 710838124 | 0.000000e+00 | 2719.0 |
12 | TraesCS3B01G522400 | chr3A | 84.070 | 2128 | 309 | 23 | 2160 | 4270 | 710937416 | 710939530 | 0.000000e+00 | 2025.0 |
13 | TraesCS3B01G522400 | chr3A | 83.651 | 2098 | 314 | 21 | 2160 | 4241 | 711057832 | 711059916 | 0.000000e+00 | 1947.0 |
14 | TraesCS3B01G522400 | chr3A | 84.871 | 1474 | 186 | 28 | 2299 | 3741 | 710948367 | 710949834 | 0.000000e+00 | 1452.0 |
15 | TraesCS3B01G522400 | chr3A | 86.525 | 1128 | 130 | 14 | 1001 | 2115 | 711056723 | 711057841 | 0.000000e+00 | 1221.0 |
16 | TraesCS3B01G522400 | chr3A | 84.502 | 1226 | 170 | 16 | 699 | 1912 | 710935303 | 710936520 | 0.000000e+00 | 1194.0 |
17 | TraesCS3B01G522400 | chr3A | 94.872 | 390 | 15 | 5 | 1 | 387 | 710835983 | 710836370 | 5.420000e-169 | 604.0 |
18 | TraesCS3B01G522400 | chr3A | 86.709 | 316 | 29 | 8 | 1 | 308 | 532848984 | 532849294 | 6.070000e-89 | 339.0 |
19 | TraesCS3B01G522400 | chr3A | 83.088 | 408 | 33 | 18 | 1 | 387 | 644630324 | 644629932 | 6.070000e-89 | 339.0 |
20 | TraesCS3B01G522400 | chr3A | 90.114 | 263 | 12 | 5 | 4638 | 4894 | 710840576 | 710840830 | 3.650000e-86 | 329.0 |
21 | TraesCS3B01G522400 | chr3A | 81.343 | 402 | 47 | 18 | 7 | 389 | 521574006 | 521573614 | 7.960000e-78 | 302.0 |
22 | TraesCS3B01G522400 | chr3A | 97.368 | 38 | 1 | 0 | 4595 | 4632 | 466806942 | 466806979 | 1.140000e-06 | 65.8 |
23 | TraesCS3B01G522400 | chr3A | 97.368 | 38 | 0 | 1 | 4595 | 4632 | 57262244 | 57262208 | 4.090000e-06 | 63.9 |
24 | TraesCS3B01G522400 | chr3A | 88.462 | 52 | 3 | 3 | 4583 | 4632 | 720370542 | 720370592 | 5.290000e-05 | 60.2 |
25 | TraesCS3B01G522400 | chr3D | 92.787 | 2440 | 128 | 16 | 2162 | 4570 | 574781744 | 574779322 | 0.000000e+00 | 3487.0 |
26 | TraesCS3B01G522400 | chr3D | 89.036 | 1815 | 188 | 10 | 2271 | 4075 | 575479921 | 575481734 | 0.000000e+00 | 2239.0 |
27 | TraesCS3B01G522400 | chr3D | 95.004 | 1381 | 61 | 3 | 740 | 2115 | 574783114 | 574781737 | 0.000000e+00 | 2161.0 |
28 | TraesCS3B01G522400 | chr3D | 84.236 | 1846 | 264 | 22 | 2252 | 4075 | 575527368 | 575529208 | 0.000000e+00 | 1772.0 |
29 | TraesCS3B01G522400 | chr3D | 81.478 | 2165 | 347 | 38 | 2118 | 4256 | 575546458 | 575548594 | 0.000000e+00 | 1727.0 |
30 | TraesCS3B01G522400 | chr3D | 82.265 | 2013 | 320 | 30 | 2250 | 4239 | 574770149 | 574768151 | 0.000000e+00 | 1705.0 |
31 | TraesCS3B01G522400 | chr3D | 82.265 | 2013 | 320 | 30 | 2250 | 4239 | 575488028 | 575490026 | 0.000000e+00 | 1705.0 |
32 | TraesCS3B01G522400 | chr3D | 81.660 | 1265 | 204 | 22 | 699 | 1944 | 574771540 | 574770285 | 0.000000e+00 | 1026.0 |
33 | TraesCS3B01G522400 | chr3D | 81.660 | 1265 | 204 | 22 | 699 | 1944 | 575486637 | 575487892 | 0.000000e+00 | 1026.0 |
34 | TraesCS3B01G522400 | chr3D | 92.573 | 377 | 16 | 3 | 385 | 755 | 574785228 | 574784858 | 9.330000e-147 | 531.0 |
35 | TraesCS3B01G522400 | chr3D | 89.950 | 398 | 18 | 12 | 1 | 387 | 574785640 | 574785254 | 1.220000e-135 | 494.0 |
36 | TraesCS3B01G522400 | chr3D | 89.200 | 250 | 19 | 5 | 4646 | 4894 | 574779083 | 574778841 | 6.150000e-79 | 305.0 |
37 | TraesCS3B01G522400 | chr3D | 88.213 | 263 | 18 | 7 | 4638 | 4894 | 575481901 | 575482156 | 7.960000e-78 | 302.0 |
38 | TraesCS3B01G522400 | chr3D | 90.055 | 181 | 13 | 2 | 4430 | 4605 | 575481724 | 575481904 | 3.810000e-56 | 230.0 |
39 | TraesCS3B01G522400 | chr3D | 95.327 | 107 | 5 | 0 | 4643 | 4749 | 574779283 | 574779177 | 2.340000e-38 | 171.0 |
40 | TraesCS3B01G522400 | chr1B | 87.382 | 317 | 31 | 7 | 1 | 311 | 263981664 | 263981351 | 6.030000e-94 | 355.0 |
41 | TraesCS3B01G522400 | chr6A | 82.872 | 397 | 51 | 12 | 1 | 387 | 59902847 | 59902458 | 1.690000e-89 | 340.0 |
42 | TraesCS3B01G522400 | chr6A | 94.737 | 38 | 2 | 0 | 4594 | 4631 | 122681291 | 122681254 | 5.290000e-05 | 60.2 |
43 | TraesCS3B01G522400 | chr1D | 83.844 | 359 | 38 | 8 | 1 | 344 | 58567710 | 58568063 | 1.700000e-84 | 324.0 |
44 | TraesCS3B01G522400 | chr1D | 97.297 | 37 | 1 | 0 | 4596 | 4632 | 12039448 | 12039412 | 4.090000e-06 | 63.9 |
45 | TraesCS3B01G522400 | chr4A | 81.108 | 397 | 61 | 11 | 1 | 387 | 596787406 | 596787798 | 6.150000e-79 | 305.0 |
46 | TraesCS3B01G522400 | chr2D | 83.333 | 342 | 35 | 17 | 1 | 335 | 37826643 | 37826317 | 3.700000e-76 | 296.0 |
47 | TraesCS3B01G522400 | chr2D | 93.023 | 43 | 0 | 2 | 4589 | 4630 | 7150952 | 7150912 | 5.290000e-05 | 60.2 |
48 | TraesCS3B01G522400 | chr2D | 91.304 | 46 | 1 | 2 | 4587 | 4632 | 274856312 | 274856354 | 5.290000e-05 | 60.2 |
49 | TraesCS3B01G522400 | chr5A | 80.952 | 399 | 44 | 19 | 3 | 387 | 616353058 | 616353438 | 2.230000e-73 | 287.0 |
50 | TraesCS3B01G522400 | chr5A | 93.182 | 44 | 3 | 0 | 4587 | 4630 | 472311042 | 472310999 | 1.140000e-06 | 65.8 |
51 | TraesCS3B01G522400 | chr2B | 93.023 | 43 | 0 | 2 | 4589 | 4630 | 2111250 | 2111290 | 5.290000e-05 | 60.2 |
52 | TraesCS3B01G522400 | chr2A | 93.023 | 43 | 0 | 2 | 4589 | 4630 | 62700673 | 62700713 | 5.290000e-05 | 60.2 |
53 | TraesCS3B01G522400 | chr2A | 91.304 | 46 | 1 | 2 | 4587 | 4632 | 332027690 | 332027732 | 5.290000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G522400 | chr3B | 765546922 | 765551815 | 4893 | False | 9038.000000 | 9038 | 100.000000 | 1 | 4894 | 1 | chr3B.!!$F1 | 4893 |
1 | TraesCS3B01G522400 | chr3B | 765928465 | 765930493 | 2028 | False | 1729.000000 | 1729 | 82.258000 | 2250 | 4270 | 1 | chr3B.!!$F5 | 2020 |
2 | TraesCS3B01G522400 | chr3B | 765656634 | 765657588 | 954 | False | 1155.000000 | 1155 | 88.506000 | 889 | 1843 | 1 | chr3B.!!$F3 | 954 |
3 | TraesCS3B01G522400 | chr3B | 765621832 | 765625556 | 3724 | False | 1126.000000 | 1960 | 84.563000 | 873 | 4242 | 3 | chr3B.!!$F6 | 3369 |
4 | TraesCS3B01G522400 | chr3B | 765667905 | 765670189 | 2284 | False | 770.500000 | 1345 | 85.628500 | 699 | 2101 | 2 | chr3B.!!$F7 | 1402 |
5 | TraesCS3B01G522400 | chr3A | 710835983 | 710840830 | 4847 | False | 1795.000000 | 3528 | 93.211500 | 1 | 4894 | 4 | chr3A.!!$F5 | 4893 |
6 | TraesCS3B01G522400 | chr3A | 710935303 | 710939530 | 4227 | False | 1609.500000 | 2025 | 84.286000 | 699 | 4270 | 2 | chr3A.!!$F6 | 3571 |
7 | TraesCS3B01G522400 | chr3A | 711056723 | 711059916 | 3193 | False | 1584.000000 | 1947 | 85.088000 | 1001 | 4241 | 2 | chr3A.!!$F7 | 3240 |
8 | TraesCS3B01G522400 | chr3A | 710948367 | 710949834 | 1467 | False | 1452.000000 | 1452 | 84.871000 | 2299 | 3741 | 1 | chr3A.!!$F3 | 1442 |
9 | TraesCS3B01G522400 | chr3D | 575527368 | 575529208 | 1840 | False | 1772.000000 | 1772 | 84.236000 | 2252 | 4075 | 1 | chr3D.!!$F1 | 1823 |
10 | TraesCS3B01G522400 | chr3D | 575546458 | 575548594 | 2136 | False | 1727.000000 | 1727 | 81.478000 | 2118 | 4256 | 1 | chr3D.!!$F2 | 2138 |
11 | TraesCS3B01G522400 | chr3D | 574768151 | 574771540 | 3389 | True | 1365.500000 | 1705 | 81.962500 | 699 | 4239 | 2 | chr3D.!!$R1 | 3540 |
12 | TraesCS3B01G522400 | chr3D | 575486637 | 575490026 | 3389 | False | 1365.500000 | 1705 | 81.962500 | 699 | 4239 | 2 | chr3D.!!$F4 | 3540 |
13 | TraesCS3B01G522400 | chr3D | 574778841 | 574785640 | 6799 | True | 1191.500000 | 3487 | 92.473500 | 1 | 4894 | 6 | chr3D.!!$R2 | 4893 |
14 | TraesCS3B01G522400 | chr3D | 575479921 | 575482156 | 2235 | False | 923.666667 | 2239 | 89.101333 | 2271 | 4894 | 3 | chr3D.!!$F3 | 2623 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
934 | 2755 | 0.463295 | CGATCATTGCCCAGAGTGCT | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 | F |
1138 | 2962 | 0.459899 | CACATTGATGCATGCTGCCT | 59.540 | 50.000 | 20.33 | 0.46 | 44.23 | 4.75 | F |
1428 | 3252 | 1.026182 | TGCCGCAAAGGTATGAGCAG | 61.026 | 55.000 | 0.00 | 0.00 | 43.70 | 4.24 | F |
2733 | 5777 | 1.880027 | ACGGTTTGGAGCAGATGAAAC | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 2.78 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2107 | 5130 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.0 | 0.00 | 0.00 | 0.00 | 3.72 | R |
3085 | 6135 | 0.036732 | TCTGCGGACCTTGCTTTCAT | 59.963 | 50.0 | 0.00 | 0.00 | 0.00 | 2.57 | R |
3320 | 6373 | 0.320771 | CAGTGGGAAGGTCCTCAACG | 60.321 | 60.0 | 0.00 | 0.00 | 36.57 | 4.10 | R |
4332 | 7416 | 0.102120 | CAGCAGAGGTTAGCTCGAGG | 59.898 | 60.0 | 15.58 | 1.62 | 39.50 | 4.63 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
297 | 309 | 4.530553 | ACACACATACACCTCACATCCTTA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
308 | 320 | 8.548877 | ACACCTCACATCCTTATTTACTTGTAT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
370 | 383 | 3.193267 | TCTCAAAAATTCGGCCTTCATGG | 59.807 | 43.478 | 0.00 | 0.00 | 39.35 | 3.66 |
393 | 434 | 1.334419 | GCCGAGATCCAAAATGATGCG | 60.334 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
394 | 435 | 1.265095 | CCGAGATCCAAAATGATGCGG | 59.735 | 52.381 | 0.00 | 0.00 | 34.81 | 5.69 |
413 | 454 | 3.425404 | CGGCAATTCATGGAGTTAAACG | 58.575 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
517 | 558 | 3.070018 | AGTAACTGTCATGCTTGTCTGC | 58.930 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
644 | 691 | 3.426191 | GTCACATGAAAACTACGCGTACA | 59.574 | 43.478 | 16.41 | 11.96 | 0.00 | 2.90 |
654 | 701 | 2.159599 | ACTACGCGTACACTAAGTCAGC | 60.160 | 50.000 | 16.41 | 0.00 | 0.00 | 4.26 |
688 | 735 | 3.189285 | GTGGTGCGGTGTATAATTACGT | 58.811 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
744 | 2550 | 6.008331 | TCTAAGCCTTGTCAGAGTAACACTA | 58.992 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
934 | 2755 | 0.463295 | CGATCATTGCCCAGAGTGCT | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
968 | 2790 | 0.470080 | ATAGCGCTTCCAGCCCTCTA | 60.470 | 55.000 | 18.68 | 0.00 | 38.18 | 2.43 |
1138 | 2962 | 0.459899 | CACATTGATGCATGCTGCCT | 59.540 | 50.000 | 20.33 | 0.46 | 44.23 | 4.75 |
1160 | 2984 | 2.972713 | TGAGTAAGGTGGCAGAAGTTCT | 59.027 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1396 | 3220 | 5.234466 | AGAAGTGGTTCATCAAGCTAAGT | 57.766 | 39.130 | 0.00 | 0.00 | 34.82 | 2.24 |
1428 | 3252 | 1.026182 | TGCCGCAAAGGTATGAGCAG | 61.026 | 55.000 | 0.00 | 0.00 | 43.70 | 4.24 |
1454 | 3278 | 1.950909 | GCGAGATCCTAGCACTAGTGT | 59.049 | 52.381 | 23.44 | 12.90 | 32.52 | 3.55 |
1457 | 3281 | 4.216687 | GCGAGATCCTAGCACTAGTGTTAT | 59.783 | 45.833 | 23.44 | 8.81 | 32.52 | 1.89 |
1548 | 3372 | 7.295952 | AGACGAGTTGATAAACATGTTGATC | 57.704 | 36.000 | 24.09 | 24.09 | 32.23 | 2.92 |
1791 | 3615 | 8.331740 | AGTGAAGAATGGGAAGAAAATCATCTA | 58.668 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1970 | 4981 | 9.507280 | CTTTTGGCATAAATGATGTAGTTAGTG | 57.493 | 33.333 | 0.00 | 0.00 | 37.90 | 2.74 |
2064 | 5087 | 5.281693 | TGATCTCAACTGTTAATGCAACG | 57.718 | 39.130 | 0.00 | 0.00 | 40.26 | 4.10 |
2115 | 5138 | 7.132694 | CACATAAGTTATCATGTGTGTGTGT | 57.867 | 36.000 | 8.50 | 0.00 | 44.50 | 3.72 |
2116 | 5139 | 7.017055 | CACATAAGTTATCATGTGTGTGTGTG | 58.983 | 38.462 | 8.50 | 1.25 | 44.50 | 3.82 |
2365 | 5401 | 2.717639 | ATGGGATACAGAAGTGTGGC | 57.282 | 50.000 | 0.00 | 0.00 | 37.52 | 5.01 |
2496 | 5535 | 8.746052 | TCTACAAAATGAAACCTCTTTCTGAA | 57.254 | 30.769 | 0.00 | 0.00 | 37.30 | 3.02 |
2570 | 5613 | 2.416547 | CCAAGAGTTGGTGCAAGTATCG | 59.583 | 50.000 | 0.00 | 0.00 | 45.93 | 2.92 |
2733 | 5777 | 1.880027 | ACGGTTTGGAGCAGATGAAAC | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 2.78 |
2786 | 5830 | 5.826208 | ACCTTCGTATCTGAAACCTTGTTTT | 59.174 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3026 | 6076 | 4.815308 | GTGCTTGATCTCATATGCTCACTT | 59.185 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3069 | 6119 | 1.881973 | CAATATTGGATGGCACCGGAG | 59.118 | 52.381 | 9.46 | 0.00 | 0.00 | 4.63 |
3122 | 6172 | 4.576053 | CGCAGATTGTCCATCCAAAATAGA | 59.424 | 41.667 | 0.00 | 0.00 | 31.20 | 1.98 |
3128 | 6178 | 9.484806 | AGATTGTCCATCCAAAATAGAAAGATT | 57.515 | 29.630 | 0.00 | 0.00 | 31.20 | 2.40 |
3198 | 6248 | 4.827835 | TCACCAATAATGTTGTCGGGAAAA | 59.172 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3200 | 6250 | 6.015010 | TCACCAATAATGTTGTCGGGAAAATT | 60.015 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
3440 | 6494 | 3.617284 | TCTAAGACGTCTGATGTGCCTA | 58.383 | 45.455 | 20.85 | 3.95 | 0.00 | 3.93 |
3676 | 6739 | 6.448006 | ACAGTCTAGATATTTATGTCCGTGC | 58.552 | 40.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3807 | 6870 | 2.458951 | CTTCATCGCTTTCTCTCCTCG | 58.541 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
4076 | 7146 | 2.428890 | ACCTTCTCAGCTAAGTGGATCG | 59.571 | 50.000 | 5.83 | 0.00 | 0.00 | 3.69 |
4127 | 7197 | 1.219393 | CTCCCTTCCTTGGAGCGAC | 59.781 | 63.158 | 0.00 | 0.00 | 42.75 | 5.19 |
4172 | 7242 | 1.032657 | AGCTAGTGATCGCGAGGTGT | 61.033 | 55.000 | 18.44 | 0.00 | 0.00 | 4.16 |
4173 | 7243 | 0.179134 | GCTAGTGATCGCGAGGTGTT | 60.179 | 55.000 | 16.66 | 0.00 | 0.00 | 3.32 |
4174 | 7244 | 1.065102 | GCTAGTGATCGCGAGGTGTTA | 59.935 | 52.381 | 16.66 | 2.57 | 0.00 | 2.41 |
4244 | 7314 | 1.374252 | CCGTCCCGTCCTTGACTTG | 60.374 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
4270 | 7340 | 2.738846 | GACGCATGCATAGGAATAGGTG | 59.261 | 50.000 | 19.57 | 0.00 | 0.00 | 4.00 |
4281 | 7351 | 1.134788 | GGAATAGGTGCGCACACTAGT | 60.135 | 52.381 | 38.60 | 32.04 | 46.57 | 2.57 |
4282 | 7352 | 1.927174 | GAATAGGTGCGCACACTAGTG | 59.073 | 52.381 | 38.60 | 21.44 | 46.57 | 2.74 |
4320 | 7404 | 8.055279 | TCTTTGTTTCTTTCTCAGTTTCATGT | 57.945 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
4332 | 7416 | 2.093235 | AGTTTCATGTGGAGGCTAGCTC | 60.093 | 50.000 | 15.72 | 9.94 | 0.00 | 4.09 |
4333 | 7417 | 0.833287 | TTCATGTGGAGGCTAGCTCC | 59.167 | 55.000 | 15.72 | 18.51 | 41.21 | 4.70 |
4334 | 7418 | 0.031716 | TCATGTGGAGGCTAGCTCCT | 60.032 | 55.000 | 24.53 | 12.60 | 41.39 | 3.69 |
4349 | 7447 | 0.383949 | CTCCTCGAGCTAACCTCTGC | 59.616 | 60.000 | 6.99 | 0.00 | 38.49 | 4.26 |
4373 | 7471 | 6.358822 | GCTGTACGTGTATTCTTTTGTTTTCC | 59.641 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
4374 | 7472 | 6.420588 | TGTACGTGTATTCTTTTGTTTTCCG | 58.579 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4382 | 7480 | 5.394224 | TTCTTTTGTTTTCCGACCAAGTT | 57.606 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
4397 | 7495 | 5.705905 | CGACCAAGTTTTTAATTCCTCTCCT | 59.294 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4403 | 7501 | 8.510505 | CAAGTTTTTAATTCCTCTCCTCTTCTG | 58.489 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
4454 | 7552 | 2.351726 | GGTCGATTCACCAAATCTTCCG | 59.648 | 50.000 | 0.00 | 0.00 | 41.46 | 4.30 |
4577 | 7686 | 7.962964 | TGTAATATGAACTGCTTATGCTACC | 57.037 | 36.000 | 1.96 | 0.00 | 40.48 | 3.18 |
4599 | 7708 | 9.832445 | CTACCAAGGTACAAGATTACATATGTT | 57.168 | 33.333 | 14.77 | 0.00 | 0.00 | 2.71 |
4612 | 7721 | 9.091220 | AGATTACATATGTTAAGTACTCCCTCC | 57.909 | 37.037 | 14.77 | 0.00 | 0.00 | 4.30 |
4613 | 7722 | 5.786264 | ACATATGTTAAGTACTCCCTCCG | 57.214 | 43.478 | 1.41 | 0.00 | 0.00 | 4.63 |
4614 | 7723 | 5.206587 | ACATATGTTAAGTACTCCCTCCGT | 58.793 | 41.667 | 1.41 | 0.00 | 0.00 | 4.69 |
4615 | 7724 | 6.367983 | ACATATGTTAAGTACTCCCTCCGTA | 58.632 | 40.000 | 1.41 | 0.00 | 0.00 | 4.02 |
4616 | 7725 | 6.835488 | ACATATGTTAAGTACTCCCTCCGTAA | 59.165 | 38.462 | 1.41 | 0.00 | 0.00 | 3.18 |
4617 | 7726 | 7.342799 | ACATATGTTAAGTACTCCCTCCGTAAA | 59.657 | 37.037 | 1.41 | 0.00 | 0.00 | 2.01 |
4618 | 7727 | 5.649782 | TGTTAAGTACTCCCTCCGTAAAG | 57.350 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
4619 | 7728 | 5.324409 | TGTTAAGTACTCCCTCCGTAAAGA | 58.676 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4620 | 7729 | 5.774690 | TGTTAAGTACTCCCTCCGTAAAGAA | 59.225 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4621 | 7730 | 6.267471 | TGTTAAGTACTCCCTCCGTAAAGAAA | 59.733 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
4622 | 7731 | 7.038799 | TGTTAAGTACTCCCTCCGTAAAGAAAT | 60.039 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
4623 | 7732 | 8.470002 | GTTAAGTACTCCCTCCGTAAAGAAATA | 58.530 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
4624 | 7733 | 7.672122 | AAGTACTCCCTCCGTAAAGAAATAT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4625 | 7734 | 8.773033 | AAGTACTCCCTCCGTAAAGAAATATA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
4626 | 7735 | 8.773033 | AGTACTCCCTCCGTAAAGAAATATAA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
4627 | 7736 | 8.858094 | AGTACTCCCTCCGTAAAGAAATATAAG | 58.142 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
4628 | 7737 | 7.909485 | ACTCCCTCCGTAAAGAAATATAAGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4629 | 7738 | 7.953752 | ACTCCCTCCGTAAAGAAATATAAGAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
4630 | 7739 | 6.756221 | TCCCTCCGTAAAGAAATATAAGAGC | 58.244 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
4631 | 7740 | 5.634020 | CCCTCCGTAAAGAAATATAAGAGCG | 59.366 | 44.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4632 | 7741 | 5.118817 | CCTCCGTAAAGAAATATAAGAGCGC | 59.881 | 44.000 | 0.00 | 0.00 | 0.00 | 5.92 |
4633 | 7742 | 5.593968 | TCCGTAAAGAAATATAAGAGCGCA | 58.406 | 37.500 | 11.47 | 0.00 | 0.00 | 6.09 |
4634 | 7743 | 5.690409 | TCCGTAAAGAAATATAAGAGCGCAG | 59.310 | 40.000 | 11.47 | 0.00 | 0.00 | 5.18 |
4635 | 7744 | 5.107453 | CCGTAAAGAAATATAAGAGCGCAGG | 60.107 | 44.000 | 11.47 | 0.00 | 0.00 | 4.85 |
4636 | 7745 | 5.107453 | CGTAAAGAAATATAAGAGCGCAGGG | 60.107 | 44.000 | 11.47 | 0.00 | 0.00 | 4.45 |
4637 | 7746 | 4.689612 | AAGAAATATAAGAGCGCAGGGA | 57.310 | 40.909 | 11.47 | 0.00 | 0.00 | 4.20 |
4638 | 7747 | 4.264460 | AGAAATATAAGAGCGCAGGGAG | 57.736 | 45.455 | 11.47 | 0.00 | 0.00 | 4.30 |
4639 | 7748 | 2.464157 | AATATAAGAGCGCAGGGAGC | 57.536 | 50.000 | 11.47 | 0.00 | 40.87 | 4.70 |
4677 | 7983 | 8.660373 | GTGAGCAATCCACTAAGTAATATATGC | 58.340 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
4699 | 8005 | 5.125900 | TGCTTCTATTGGATGAAACATGTGG | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4701 | 8007 | 6.678900 | GCTTCTATTGGATGAAACATGTGGTC | 60.679 | 42.308 | 0.00 | 0.39 | 0.00 | 4.02 |
4704 | 8011 | 6.947733 | TCTATTGGATGAAACATGTGGTCTTT | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
4705 | 8012 | 4.852134 | TGGATGAAACATGTGGTCTTTG | 57.148 | 40.909 | 0.00 | 0.00 | 0.00 | 2.77 |
4737 | 8044 | 4.023279 | TCGGAACATTTGACTGAACCATTG | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
4745 | 8052 | 2.308570 | TGACTGAACCATTGGTATGCCT | 59.691 | 45.455 | 9.20 | 0.00 | 33.12 | 4.75 |
4746 | 8053 | 2.684881 | GACTGAACCATTGGTATGCCTG | 59.315 | 50.000 | 9.20 | 5.92 | 33.12 | 4.85 |
4747 | 8054 | 2.041620 | ACTGAACCATTGGTATGCCTGT | 59.958 | 45.455 | 9.20 | 6.49 | 33.12 | 4.00 |
4748 | 8055 | 2.424601 | CTGAACCATTGGTATGCCTGTG | 59.575 | 50.000 | 9.20 | 0.00 | 33.12 | 3.66 |
4749 | 8056 | 2.040947 | TGAACCATTGGTATGCCTGTGA | 59.959 | 45.455 | 9.20 | 0.00 | 33.12 | 3.58 |
4750 | 8057 | 3.290710 | GAACCATTGGTATGCCTGTGAT | 58.709 | 45.455 | 9.20 | 0.00 | 33.12 | 3.06 |
4751 | 8058 | 2.658285 | ACCATTGGTATGCCTGTGATG | 58.342 | 47.619 | 6.54 | 0.88 | 32.11 | 3.07 |
4759 | 8066 | 2.495155 | ATGCCTGTGATGTGTGCTTA | 57.505 | 45.000 | 0.00 | 0.00 | 0.00 | 3.09 |
4762 | 8069 | 2.086869 | GCCTGTGATGTGTGCTTACAT | 58.913 | 47.619 | 6.17 | 6.17 | 43.61 | 2.29 |
4766 | 8073 | 5.118286 | CCTGTGATGTGTGCTTACATGATA | 58.882 | 41.667 | 10.45 | 1.54 | 41.15 | 2.15 |
4775 | 8082 | 5.582269 | GTGTGCTTACATGATACACATCTGT | 59.418 | 40.000 | 14.97 | 0.00 | 42.63 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 4.598894 | CTCCATGGAGCTCGGCCG | 62.599 | 72.222 | 28.45 | 22.12 | 35.31 | 6.13 |
339 | 351 | 6.700081 | AGGCCGAATTTTTGAGAAACTAAAAC | 59.300 | 34.615 | 0.00 | 0.00 | 36.45 | 2.43 |
340 | 352 | 6.811954 | AGGCCGAATTTTTGAGAAACTAAAA | 58.188 | 32.000 | 0.00 | 0.00 | 37.53 | 1.52 |
344 | 356 | 4.340950 | TGAAGGCCGAATTTTTGAGAAACT | 59.659 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
345 | 357 | 4.616953 | TGAAGGCCGAATTTTTGAGAAAC | 58.383 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
349 | 362 | 3.193267 | TCCATGAAGGCCGAATTTTTGAG | 59.807 | 43.478 | 0.00 | 0.00 | 37.29 | 3.02 |
370 | 383 | 2.332063 | TCATTTTGGATCTCGGCCTC | 57.668 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
393 | 434 | 3.428862 | CCCGTTTAACTCCATGAATTGCC | 60.429 | 47.826 | 0.00 | 0.00 | 0.00 | 4.52 |
394 | 435 | 3.192633 | ACCCGTTTAACTCCATGAATTGC | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
413 | 454 | 4.937201 | AACAAAGGACAGATTTGAACCC | 57.063 | 40.909 | 5.50 | 0.00 | 39.50 | 4.11 |
517 | 558 | 3.044986 | CAACTCGGTTTTGCATTGACTG | 58.955 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
530 | 571 | 1.696097 | AAGCACCAGGACAACTCGGT | 61.696 | 55.000 | 0.00 | 0.00 | 32.90 | 4.69 |
531 | 572 | 0.320374 | TAAGCACCAGGACAACTCGG | 59.680 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
532 | 573 | 2.163818 | TTAAGCACCAGGACAACTCG | 57.836 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
644 | 691 | 0.679505 | TCACAAGGCGCTGACTTAGT | 59.320 | 50.000 | 7.64 | 1.16 | 0.00 | 2.24 |
654 | 701 | 1.580942 | CACCACCAATCACAAGGCG | 59.419 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
688 | 735 | 8.274322 | TCTTGAGATGGAAGAAATAAATAGCCA | 58.726 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
717 | 764 | 3.902881 | ACTCTGACAAGGCTTAGATGG | 57.097 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
744 | 2550 | 5.832060 | AGCGGTTGTGGTAGTAATAGTAGAT | 59.168 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
968 | 2790 | 0.106217 | CTGGGAGTGGTTTGGGTGTT | 60.106 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1138 | 2962 | 3.391296 | AGAACTTCTGCCACCTTACTCAA | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1160 | 2984 | 0.249868 | CTTGTGAAGCTGGTCCACGA | 60.250 | 55.000 | 0.00 | 0.00 | 33.78 | 4.35 |
1412 | 3236 | 1.097547 | CCCCTGCTCATACCTTTGCG | 61.098 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1413 | 3237 | 0.255890 | TCCCCTGCTCATACCTTTGC | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1428 | 3252 | 1.188219 | TGCTAGGATCTCGCATCCCC | 61.188 | 60.000 | 9.07 | 1.19 | 38.98 | 4.81 |
1454 | 3278 | 3.342377 | TCATGCGAGGGTCAACAATAA | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
1457 | 3281 | 1.452110 | CATCATGCGAGGGTCAACAA | 58.548 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1548 | 3372 | 3.426695 | GCTTCAACCAATCATCACCTTCG | 60.427 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
1970 | 4981 | 7.917505 | CCCTAATTGTTGAAAGATGAGTTATGC | 59.082 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
1977 | 4988 | 5.415701 | GCACTCCCTAATTGTTGAAAGATGA | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2029 | 5044 | 3.827008 | TGAGATCATCCACTTAGGCAC | 57.173 | 47.619 | 0.00 | 0.00 | 37.29 | 5.01 |
2103 | 5126 | 1.468127 | ACACACACACACACACACATG | 59.532 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2104 | 5127 | 1.468127 | CACACACACACACACACACAT | 59.532 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2106 | 5129 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2107 | 5130 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2108 | 5131 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2109 | 5132 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2110 | 5133 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2111 | 5134 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2112 | 5135 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2113 | 5136 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2114 | 5137 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2115 | 5138 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2116 | 5139 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2365 | 5401 | 6.680810 | TGGAGAAAGCACACTTGATTAATTG | 58.319 | 36.000 | 0.00 | 0.00 | 35.85 | 2.32 |
2496 | 5535 | 9.784531 | TTTAAGAAGAGAATTCTTGACACATCT | 57.215 | 29.630 | 9.87 | 1.44 | 43.63 | 2.90 |
2570 | 5613 | 7.042523 | CCACCACATTTCTTCAAAATGTCTTTC | 60.043 | 37.037 | 11.99 | 0.00 | 45.87 | 2.62 |
2656 | 5700 | 4.747810 | CAAAGCATACCATTGGTCCTTTC | 58.252 | 43.478 | 12.68 | 0.00 | 37.09 | 2.62 |
2786 | 5830 | 4.349636 | TCCGGGAAGATGCCAAGATATAAA | 59.650 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2988 | 6038 | 2.813172 | CAAGCACCATGTCATGTACACA | 59.187 | 45.455 | 11.84 | 0.00 | 42.09 | 3.72 |
3026 | 6076 | 6.976088 | TGTGACAAAGTTTTCTTCACTTGAA | 58.024 | 32.000 | 16.90 | 0.00 | 39.48 | 2.69 |
3069 | 6119 | 8.491331 | TTGCTTTCATAATTAGGCATTTTTCC | 57.509 | 30.769 | 0.00 | 0.00 | 0.00 | 3.13 |
3085 | 6135 | 0.036732 | TCTGCGGACCTTGCTTTCAT | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3086 | 6136 | 0.036732 | ATCTGCGGACCTTGCTTTCA | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3128 | 6178 | 5.310331 | TGCCATCCTAGAAATATCCACATCA | 59.690 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3158 | 6208 | 5.223449 | TGGTGAAAACGGTAAGAGATCTT | 57.777 | 39.130 | 0.00 | 0.07 | 39.85 | 2.40 |
3320 | 6373 | 0.320771 | CAGTGGGAAGGTCCTCAACG | 60.321 | 60.000 | 0.00 | 0.00 | 36.57 | 4.10 |
3440 | 6494 | 7.551974 | GGCAGCTTCATATGATAGTCAACATAT | 59.448 | 37.037 | 6.17 | 0.00 | 39.36 | 1.78 |
3686 | 6749 | 5.253330 | ACCCAATCTTCGCTCAAGAAATTA | 58.747 | 37.500 | 0.00 | 0.00 | 44.66 | 1.40 |
3693 | 6756 | 1.351017 | AGGAACCCAATCTTCGCTCAA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
3807 | 6870 | 9.569122 | TTTAACCACCTTTATATGAAGATAGGC | 57.431 | 33.333 | 8.74 | 0.00 | 0.00 | 3.93 |
3907 | 6971 | 3.325870 | CACCACACGCTCTTCATAGAAA | 58.674 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
4076 | 7146 | 2.250188 | CAAATCGATGTTTTCACGGGC | 58.750 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
4127 | 7197 | 9.734984 | TTCCTCCTTAATAACTTTAACCTCAAG | 57.265 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4172 | 7242 | 4.009675 | CTGCCTTTGCTTCATACACCTAA | 58.990 | 43.478 | 0.00 | 0.00 | 38.71 | 2.69 |
4173 | 7243 | 3.609853 | CTGCCTTTGCTTCATACACCTA | 58.390 | 45.455 | 0.00 | 0.00 | 38.71 | 3.08 |
4174 | 7244 | 2.440409 | CTGCCTTTGCTTCATACACCT | 58.560 | 47.619 | 0.00 | 0.00 | 38.71 | 4.00 |
4281 | 7351 | 5.923684 | AGAAACAAAGAAAAAGCAACGAACA | 59.076 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4282 | 7352 | 6.389622 | AGAAACAAAGAAAAAGCAACGAAC | 57.610 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
4283 | 7353 | 7.383843 | AGAAAGAAACAAAGAAAAAGCAACGAA | 59.616 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
4286 | 7370 | 8.017587 | TGAGAAAGAAACAAAGAAAAAGCAAC | 57.982 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
4292 | 7376 | 9.927668 | ATGAAACTGAGAAAGAAACAAAGAAAA | 57.072 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
4332 | 7416 | 0.102120 | CAGCAGAGGTTAGCTCGAGG | 59.898 | 60.000 | 15.58 | 1.62 | 39.50 | 4.63 |
4333 | 7417 | 0.814457 | ACAGCAGAGGTTAGCTCGAG | 59.186 | 55.000 | 8.45 | 8.45 | 39.50 | 4.04 |
4334 | 7418 | 1.743958 | GTACAGCAGAGGTTAGCTCGA | 59.256 | 52.381 | 5.75 | 0.00 | 39.50 | 4.04 |
4349 | 7447 | 6.572254 | CGGAAAACAAAAGAATACACGTACAG | 59.428 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
4373 | 7471 | 5.705905 | AGGAGAGGAATTAAAAACTTGGTCG | 59.294 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4374 | 7472 | 6.943146 | AGAGGAGAGGAATTAAAAACTTGGTC | 59.057 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
4382 | 7480 | 7.518188 | ACAACAGAAGAGGAGAGGAATTAAAA | 58.482 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
4403 | 7501 | 0.317854 | GCCGCCTGAAACTGAACAAC | 60.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4507 | 7605 | 3.388024 | TCAATCGACCTAGCTAGCCAAAT | 59.612 | 43.478 | 15.74 | 3.46 | 0.00 | 2.32 |
4566 | 7675 | 4.766375 | TCTTGTACCTTGGTAGCATAAGC | 58.234 | 43.478 | 0.00 | 0.00 | 42.56 | 3.09 |
4599 | 7708 | 8.773033 | ATATTTCTTTACGGAGGGAGTACTTA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4604 | 7713 | 7.471679 | GCTCTTATATTTCTTTACGGAGGGAGT | 60.472 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
4605 | 7714 | 6.869388 | GCTCTTATATTTCTTTACGGAGGGAG | 59.131 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
4606 | 7715 | 6.516194 | CGCTCTTATATTTCTTTACGGAGGGA | 60.516 | 42.308 | 0.00 | 0.00 | 34.63 | 4.20 |
4607 | 7716 | 5.634020 | CGCTCTTATATTTCTTTACGGAGGG | 59.366 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4608 | 7717 | 5.118817 | GCGCTCTTATATTTCTTTACGGAGG | 59.881 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4609 | 7718 | 5.690409 | TGCGCTCTTATATTTCTTTACGGAG | 59.310 | 40.000 | 9.73 | 0.00 | 0.00 | 4.63 |
4610 | 7719 | 5.593968 | TGCGCTCTTATATTTCTTTACGGA | 58.406 | 37.500 | 9.73 | 0.00 | 0.00 | 4.69 |
4611 | 7720 | 5.107453 | CCTGCGCTCTTATATTTCTTTACGG | 60.107 | 44.000 | 9.73 | 0.00 | 0.00 | 4.02 |
4612 | 7721 | 5.107453 | CCCTGCGCTCTTATATTTCTTTACG | 60.107 | 44.000 | 9.73 | 0.00 | 0.00 | 3.18 |
4613 | 7722 | 5.989777 | TCCCTGCGCTCTTATATTTCTTTAC | 59.010 | 40.000 | 9.73 | 0.00 | 0.00 | 2.01 |
4614 | 7723 | 6.169557 | TCCCTGCGCTCTTATATTTCTTTA | 57.830 | 37.500 | 9.73 | 0.00 | 0.00 | 1.85 |
4615 | 7724 | 5.036117 | TCCCTGCGCTCTTATATTTCTTT | 57.964 | 39.130 | 9.73 | 0.00 | 0.00 | 2.52 |
4616 | 7725 | 4.636249 | CTCCCTGCGCTCTTATATTTCTT | 58.364 | 43.478 | 9.73 | 0.00 | 0.00 | 2.52 |
4617 | 7726 | 3.556004 | GCTCCCTGCGCTCTTATATTTCT | 60.556 | 47.826 | 9.73 | 0.00 | 0.00 | 2.52 |
4618 | 7727 | 2.739379 | GCTCCCTGCGCTCTTATATTTC | 59.261 | 50.000 | 9.73 | 0.00 | 0.00 | 2.17 |
4619 | 7728 | 2.104792 | TGCTCCCTGCGCTCTTATATTT | 59.895 | 45.455 | 9.73 | 0.00 | 46.63 | 1.40 |
4620 | 7729 | 1.694150 | TGCTCCCTGCGCTCTTATATT | 59.306 | 47.619 | 9.73 | 0.00 | 46.63 | 1.28 |
4621 | 7730 | 1.342074 | TGCTCCCTGCGCTCTTATAT | 58.658 | 50.000 | 9.73 | 0.00 | 46.63 | 0.86 |
4622 | 7731 | 1.119684 | TTGCTCCCTGCGCTCTTATA | 58.880 | 50.000 | 9.73 | 0.00 | 46.63 | 0.98 |
4623 | 7732 | 0.471617 | ATTGCTCCCTGCGCTCTTAT | 59.528 | 50.000 | 9.73 | 0.00 | 46.63 | 1.73 |
4624 | 7733 | 0.253044 | AATTGCTCCCTGCGCTCTTA | 59.747 | 50.000 | 9.73 | 0.00 | 46.63 | 2.10 |
4625 | 7734 | 1.001641 | AATTGCTCCCTGCGCTCTT | 60.002 | 52.632 | 9.73 | 0.00 | 46.63 | 2.85 |
4626 | 7735 | 1.451028 | GAATTGCTCCCTGCGCTCT | 60.451 | 57.895 | 9.73 | 0.00 | 46.63 | 4.09 |
4627 | 7736 | 1.712977 | CTGAATTGCTCCCTGCGCTC | 61.713 | 60.000 | 9.73 | 0.00 | 46.63 | 5.03 |
4628 | 7737 | 1.748122 | CTGAATTGCTCCCTGCGCT | 60.748 | 57.895 | 9.73 | 0.00 | 46.63 | 5.92 |
4629 | 7738 | 1.099879 | ATCTGAATTGCTCCCTGCGC | 61.100 | 55.000 | 0.00 | 0.00 | 46.63 | 6.09 |
4630 | 7739 | 1.386533 | AATCTGAATTGCTCCCTGCG | 58.613 | 50.000 | 0.00 | 0.00 | 46.63 | 5.18 |
4631 | 7740 | 3.314635 | CACTAATCTGAATTGCTCCCTGC | 59.685 | 47.826 | 0.00 | 0.00 | 43.25 | 4.85 |
4632 | 7741 | 4.774124 | TCACTAATCTGAATTGCTCCCTG | 58.226 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
4633 | 7742 | 4.685575 | GCTCACTAATCTGAATTGCTCCCT | 60.686 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
4634 | 7743 | 3.563390 | GCTCACTAATCTGAATTGCTCCC | 59.437 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4635 | 7744 | 4.194640 | TGCTCACTAATCTGAATTGCTCC | 58.805 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
4636 | 7745 | 5.808042 | TTGCTCACTAATCTGAATTGCTC | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
4637 | 7746 | 5.298777 | GGATTGCTCACTAATCTGAATTGCT | 59.701 | 40.000 | 0.00 | 0.00 | 35.42 | 3.91 |
4638 | 7747 | 5.066893 | TGGATTGCTCACTAATCTGAATTGC | 59.933 | 40.000 | 0.00 | 0.00 | 35.42 | 3.56 |
4639 | 7748 | 6.318144 | AGTGGATTGCTCACTAATCTGAATTG | 59.682 | 38.462 | 0.00 | 0.00 | 42.91 | 2.32 |
4674 | 7980 | 6.183360 | CCACATGTTTCATCCAATAGAAGCAT | 60.183 | 38.462 | 0.00 | 0.00 | 43.44 | 3.79 |
4677 | 7983 | 6.600822 | AGACCACATGTTTCATCCAATAGAAG | 59.399 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
4694 | 8000 | 4.202010 | CCGAACAGAAAACAAAGACCACAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
4699 | 8005 | 4.976987 | TGTTCCGAACAGAAAACAAAGAC | 58.023 | 39.130 | 9.99 | 0.00 | 36.25 | 3.01 |
4701 | 8007 | 6.529829 | TCAAATGTTCCGAACAGAAAACAAAG | 59.470 | 34.615 | 18.46 | 2.86 | 45.95 | 2.77 |
4704 | 8011 | 5.124776 | AGTCAAATGTTCCGAACAGAAAACA | 59.875 | 36.000 | 18.46 | 0.00 | 45.95 | 2.83 |
4705 | 8012 | 5.455525 | CAGTCAAATGTTCCGAACAGAAAAC | 59.544 | 40.000 | 18.46 | 13.46 | 45.95 | 2.43 |
4737 | 8044 | 0.734889 | GCACACATCACAGGCATACC | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4745 | 8052 | 5.351189 | GTGTATCATGTAAGCACACATCACA | 59.649 | 40.000 | 11.86 | 8.85 | 37.02 | 3.58 |
4746 | 8053 | 5.351189 | TGTGTATCATGTAAGCACACATCAC | 59.649 | 40.000 | 12.96 | 10.68 | 43.22 | 3.06 |
4747 | 8054 | 5.486526 | TGTGTATCATGTAAGCACACATCA | 58.513 | 37.500 | 12.96 | 0.00 | 43.22 | 3.07 |
4751 | 8058 | 5.582269 | ACAGATGTGTATCATGTAAGCACAC | 59.418 | 40.000 | 13.80 | 11.60 | 41.88 | 3.82 |
4759 | 8066 | 8.777413 | GCAAATACATACAGATGTGTATCATGT | 58.223 | 33.333 | 12.35 | 12.61 | 45.20 | 3.21 |
4762 | 8069 | 9.696917 | CTAGCAAATACATACAGATGTGTATCA | 57.303 | 33.333 | 12.35 | 4.68 | 45.20 | 2.15 |
4766 | 8073 | 6.348498 | TGCTAGCAAATACATACAGATGTGT | 58.652 | 36.000 | 16.84 | 0.00 | 46.11 | 3.72 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.