Multiple sequence alignment - TraesCS3B01G522000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G522000 chr3B 100.000 2811 0 0 1 2811 765058614 765061424 0.000000e+00 5192.0
1 TraesCS3B01G522000 chr3B 82.614 765 104 18 1351 2105 765307820 765308565 0.000000e+00 649.0
2 TraesCS3B01G522000 chr3B 78.705 1019 164 31 1338 2326 765108674 765109669 5.970000e-177 630.0
3 TraesCS3B01G522000 chr3B 100.000 180 0 0 3098 3277 765061711 765061890 1.880000e-87 333.0
4 TraesCS3B01G522000 chr3B 88.000 150 15 3 1071 1219 765307470 765307617 1.210000e-39 174.0
5 TraesCS3B01G522000 chr3B 92.857 84 5 1 444 526 3660770 3660853 1.600000e-23 121.0
6 TraesCS3B01G522000 chr3B 91.860 86 6 1 445 529 684202420 684202335 5.740000e-23 119.0
7 TraesCS3B01G522000 chr3A 91.142 1558 105 20 1227 2766 710771295 710772837 0.000000e+00 2082.0
8 TraesCS3B01G522000 chr3A 90.254 708 26 10 528 1220 710770556 710771235 0.000000e+00 885.0
9 TraesCS3B01G522000 chr3A 81.797 868 124 24 1311 2159 710794683 710795535 0.000000e+00 697.0
10 TraesCS3B01G522000 chr3A 80.052 772 126 19 1349 2101 709193275 709192513 6.180000e-152 547.0
11 TraesCS3B01G522000 chr3A 89.051 411 40 5 1 407 710744074 710744483 3.770000e-139 505.0
12 TraesCS3B01G522000 chr3A 78.203 601 106 16 1352 1934 710783037 710783630 8.640000e-96 361.0
13 TraesCS3B01G522000 chr3A 90.476 147 12 2 1074 1219 710794409 710794554 3.340000e-45 193.0
14 TraesCS3B01G522000 chr3D 89.430 1211 106 14 1317 2508 574858592 574857385 0.000000e+00 1507.0
15 TraesCS3B01G522000 chr3D 89.518 706 34 19 530 1220 574859412 574858732 0.000000e+00 857.0
16 TraesCS3B01G522000 chr3D 89.934 457 40 4 1 451 574859864 574859408 4.710000e-163 584.0
17 TraesCS3B01G522000 chr3D 88.235 272 32 0 2511 2782 574857130 574856859 3.150000e-85 326.0
18 TraesCS3B01G522000 chr3D 90.909 88 7 1 440 526 428520977 428521064 2.070000e-22 117.0
19 TraesCS3B01G522000 chr3D 88.889 45 5 0 157 201 611022978 611022934 4.570000e-04 56.5
20 TraesCS3B01G522000 chrUn 79.112 766 142 14 1349 2098 41225372 41226135 2.260000e-141 512.0
21 TraesCS3B01G522000 chrUn 92.941 85 5 1 443 526 224653307 224653391 4.440000e-24 122.0
22 TraesCS3B01G522000 chrUn 77.215 158 33 3 46 201 35346085 35345929 4.500000e-14 89.8
23 TraesCS3B01G522000 chr4B 90.476 105 7 3 425 526 437940357 437940461 5.700000e-28 135.0
24 TraesCS3B01G522000 chr2A 88.571 105 12 0 1076 1180 4047496 4047392 9.540000e-26 128.0
25 TraesCS3B01G522000 chr2A 75.132 189 28 10 3 184 735755892 735756068 1.630000e-08 71.3
26 TraesCS3B01G522000 chr6A 90.426 94 8 1 434 526 200181286 200181379 4.440000e-24 122.0
27 TraesCS3B01G522000 chr6A 80.769 104 19 1 99 201 397196942 397196839 2.710000e-11 80.5
28 TraesCS3B01G522000 chr6B 89.362 94 9 1 443 535 604838085 604837992 2.070000e-22 117.0
29 TraesCS3B01G522000 chr5B 89.474 95 4 4 436 526 669713724 669713632 7.430000e-22 115.0
30 TraesCS3B01G522000 chr2B 87.379 103 9 2 425 526 89487118 89487019 7.430000e-22 115.0
31 TraesCS3B01G522000 chr4A 76.812 138 23 6 69 205 511828258 511828129 5.870000e-08 69.4
32 TraesCS3B01G522000 chr2D 73.980 196 34 9 4 196 603523808 603523989 2.730000e-06 63.9
33 TraesCS3B01G522000 chr1B 92.308 39 2 1 157 195 662485388 662485425 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G522000 chr3B 765058614 765061890 3276 False 2762.5 5192 100.00000 1 3277 2 chr3B.!!$F3 3276
1 TraesCS3B01G522000 chr3B 765108674 765109669 995 False 630.0 630 78.70500 1338 2326 1 chr3B.!!$F2 988
2 TraesCS3B01G522000 chr3B 765307470 765308565 1095 False 411.5 649 85.30700 1071 2105 2 chr3B.!!$F4 1034
3 TraesCS3B01G522000 chr3A 710770556 710772837 2281 False 1483.5 2082 90.69800 528 2766 2 chr3A.!!$F3 2238
4 TraesCS3B01G522000 chr3A 709192513 709193275 762 True 547.0 547 80.05200 1349 2101 1 chr3A.!!$R1 752
5 TraesCS3B01G522000 chr3A 710794409 710795535 1126 False 445.0 697 86.13650 1074 2159 2 chr3A.!!$F4 1085
6 TraesCS3B01G522000 chr3A 710783037 710783630 593 False 361.0 361 78.20300 1352 1934 1 chr3A.!!$F2 582
7 TraesCS3B01G522000 chr3D 574856859 574859864 3005 True 818.5 1507 89.27925 1 2782 4 chr3D.!!$R2 2781
8 TraesCS3B01G522000 chrUn 41225372 41226135 763 False 512.0 512 79.11200 1349 2098 1 chrUn.!!$F1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.179250 CACGCACGCACACACTATTC 60.179 55.0 0.0 0.0 0.0 1.75 F
1220 1263 0.102481 GTCATCCGAGTGTATGCCGT 59.898 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1485 0.037790 GCACAGCGAGGAAGAACTCT 60.038 55.0 0.00 0.0 35.33 3.24 R
2584 3091 0.032912 ATGGCCATCACATGCTTCCA 60.033 50.0 14.09 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.555965 TCTTAACACAGTACATATGCAGATGT 58.444 34.615 28.23 28.23 42.68 3.06
53 54 6.103330 TGTTCATACATACGCACATACACTT 58.897 36.000 0.00 0.00 0.00 3.16
57 58 7.882179 TCATACATACGCACATACACTTATCT 58.118 34.615 0.00 0.00 0.00 1.98
70 71 5.450376 ACACTTATCTTTATGAACGCACG 57.550 39.130 0.00 0.00 0.00 5.34
85 86 1.859398 CACGCACGCACACACTATT 59.141 52.632 0.00 0.00 0.00 1.73
86 87 0.179250 CACGCACGCACACACTATTC 60.179 55.000 0.00 0.00 0.00 1.75
94 95 3.447586 ACGCACACACTATTCCTATGAGT 59.552 43.478 0.00 0.00 0.00 3.41
97 98 5.449999 CGCACACACTATTCCTATGAGTACA 60.450 44.000 0.00 0.00 0.00 2.90
99 100 6.986817 GCACACACTATTCCTATGAGTACATT 59.013 38.462 0.00 0.00 37.87 2.71
121 122 2.611473 CGAGAGATTGAGCCGGCATATT 60.611 50.000 31.54 7.63 0.00 1.28
122 123 3.406764 GAGAGATTGAGCCGGCATATTT 58.593 45.455 31.54 13.51 0.00 1.40
167 169 6.007079 CACATACGTTTTTGTAGTCGACATG 58.993 40.000 19.50 10.12 38.07 3.21
194 196 1.487976 TCCTCCCACTCAATGCAGATC 59.512 52.381 0.00 0.00 0.00 2.75
202 204 0.881600 TCAATGCAGATCGCCGGATG 60.882 55.000 5.05 0.00 41.33 3.51
218 220 3.228453 CGGATGGCTAGGTTAGGTTAGA 58.772 50.000 0.00 0.00 0.00 2.10
316 318 0.667993 CCTTGGAGCGCTGAAACAAA 59.332 50.000 18.48 0.00 0.00 2.83
319 321 1.388547 TGGAGCGCTGAAACAAACTT 58.611 45.000 18.48 0.00 0.00 2.66
338 342 9.406828 ACAAACTTTACTGTTTCTTGAAACTTC 57.593 29.630 21.81 2.53 37.98 3.01
342 346 9.886132 ACTTTACTGTTTCTTGAAACTTCTCTA 57.114 29.630 21.81 5.13 33.95 2.43
408 414 8.568676 TTTGTTATTTCCGGATATGAAGAACA 57.431 30.769 18.26 18.26 32.32 3.18
423 429 1.498865 GAACATATGAGCCACGGCCG 61.499 60.000 26.86 26.86 43.17 6.13
447 453 4.916983 TGCAGCAAAATTGTTCACTACT 57.083 36.364 0.00 0.00 0.00 2.57
448 454 4.858935 TGCAGCAAAATTGTTCACTACTC 58.141 39.130 0.00 0.00 0.00 2.59
449 455 4.229876 GCAGCAAAATTGTTCACTACTCC 58.770 43.478 0.00 0.00 0.00 3.85
450 456 4.798574 CAGCAAAATTGTTCACTACTCCC 58.201 43.478 0.00 0.00 0.00 4.30
451 457 4.520492 CAGCAAAATTGTTCACTACTCCCT 59.480 41.667 0.00 0.00 0.00 4.20
452 458 4.762251 AGCAAAATTGTTCACTACTCCCTC 59.238 41.667 0.00 0.00 0.00 4.30
453 459 4.762251 GCAAAATTGTTCACTACTCCCTCT 59.238 41.667 0.00 0.00 0.00 3.69
454 460 5.335191 GCAAAATTGTTCACTACTCCCTCTG 60.335 44.000 0.00 0.00 0.00 3.35
455 461 5.568620 AAATTGTTCACTACTCCCTCTGT 57.431 39.130 0.00 0.00 0.00 3.41
456 462 4.810191 ATTGTTCACTACTCCCTCTGTC 57.190 45.455 0.00 0.00 0.00 3.51
457 463 2.526432 TGTTCACTACTCCCTCTGTCC 58.474 52.381 0.00 0.00 0.00 4.02
458 464 1.826096 GTTCACTACTCCCTCTGTCCC 59.174 57.143 0.00 0.00 0.00 4.46
459 465 1.081481 TCACTACTCCCTCTGTCCCA 58.919 55.000 0.00 0.00 0.00 4.37
460 466 1.646447 TCACTACTCCCTCTGTCCCAT 59.354 52.381 0.00 0.00 0.00 4.00
461 467 2.856864 TCACTACTCCCTCTGTCCCATA 59.143 50.000 0.00 0.00 0.00 2.74
462 468 3.271225 TCACTACTCCCTCTGTCCCATAA 59.729 47.826 0.00 0.00 0.00 1.90
463 469 4.078571 TCACTACTCCCTCTGTCCCATAAT 60.079 45.833 0.00 0.00 0.00 1.28
464 470 4.039730 CACTACTCCCTCTGTCCCATAATG 59.960 50.000 0.00 0.00 0.00 1.90
465 471 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
466 472 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
467 473 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
468 474 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
469 475 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
470 476 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
471 477 4.656112 CCCTCTGTCCCATAATGTAAGACT 59.344 45.833 0.00 0.00 0.00 3.24
472 478 5.131142 CCCTCTGTCCCATAATGTAAGACTT 59.869 44.000 0.00 0.00 0.00 3.01
473 479 6.353082 CCCTCTGTCCCATAATGTAAGACTTT 60.353 42.308 0.00 0.00 0.00 2.66
474 480 7.112779 CCTCTGTCCCATAATGTAAGACTTTT 58.887 38.462 0.00 0.00 0.00 2.27
475 481 7.611855 CCTCTGTCCCATAATGTAAGACTTTTT 59.388 37.037 0.00 0.00 0.00 1.94
522 528 4.486090 CGTCCAATATTATGAGACGGAGG 58.514 47.826 15.73 7.45 44.86 4.30
523 529 4.618460 CGTCCAATATTATGAGACGGAGGG 60.618 50.000 15.73 0.00 44.86 4.30
524 530 4.527038 GTCCAATATTATGAGACGGAGGGA 59.473 45.833 0.00 0.00 0.00 4.20
525 531 4.772624 TCCAATATTATGAGACGGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
526 532 4.499183 CAATATTATGAGACGGAGGGAGC 58.501 47.826 0.00 0.00 0.00 4.70
649 659 1.694150 GCTCATGGCCACTGGATAGTA 59.306 52.381 8.16 0.00 35.19 1.82
653 663 1.123077 TGGCCACTGGATAGTAGCAG 58.877 55.000 0.00 0.00 42.39 4.24
655 665 1.342819 GGCCACTGGATAGTAGCAGAG 59.657 57.143 0.00 0.00 42.39 3.35
683 693 3.338249 CACCACTATTCCACTGGAGTTG 58.662 50.000 0.00 0.00 31.21 3.16
780 794 2.148916 TTGGTGAACGTACTCTGCAG 57.851 50.000 7.63 7.63 0.00 4.41
871 885 2.104963 ACGAGAGGAGAAAAGCCAAAGT 59.895 45.455 0.00 0.00 0.00 2.66
872 886 3.142174 CGAGAGGAGAAAAGCCAAAGTT 58.858 45.455 0.00 0.00 0.00 2.66
969 1003 3.442625 GCTACCATTCTTTGTACCCAACC 59.557 47.826 0.00 0.00 0.00 3.77
980 1014 0.927767 TACCCAACCCAACACACCTT 59.072 50.000 0.00 0.00 0.00 3.50
986 1020 0.400594 ACCCAACACACCTTAGGCTC 59.599 55.000 0.00 0.00 0.00 4.70
1192 1226 1.031235 CCATGTCACCTGCAACAACA 58.969 50.000 0.00 0.00 0.00 3.33
1220 1263 0.102481 GTCATCCGAGTGTATGCCGT 59.898 55.000 0.00 0.00 0.00 5.68
1225 1352 4.278919 TCATCCGAGTGTATGCCGTTATTA 59.721 41.667 0.00 0.00 0.00 0.98
1230 1357 5.978919 CCGAGTGTATGCCGTTATTAACTAA 59.021 40.000 5.11 0.00 0.00 2.24
1269 1400 7.328249 CAGTATGCACGGTTCATTTTAATGTTT 59.672 33.333 0.00 0.00 37.65 2.83
1287 1418 7.511959 AATGTTTAGAAGACCTTTTCCACTC 57.488 36.000 0.00 0.00 0.00 3.51
1288 1419 5.996644 TGTTTAGAAGACCTTTTCCACTCA 58.003 37.500 0.00 0.00 0.00 3.41
1289 1420 6.055588 TGTTTAGAAGACCTTTTCCACTCAG 58.944 40.000 0.00 0.00 0.00 3.35
1290 1421 5.888982 TTAGAAGACCTTTTCCACTCAGT 57.111 39.130 0.00 0.00 0.00 3.41
1292 1423 3.970640 AGAAGACCTTTTCCACTCAGTCT 59.029 43.478 0.00 0.00 36.17 3.24
1293 1424 3.760580 AGACCTTTTCCACTCAGTCTG 57.239 47.619 0.00 0.00 33.50 3.51
1294 1425 2.147150 GACCTTTTCCACTCAGTCTGC 58.853 52.381 0.00 0.00 0.00 4.26
1298 1429 3.244215 CCTTTTCCACTCAGTCTGCACTA 60.244 47.826 0.00 0.00 0.00 2.74
1299 1430 3.667497 TTTCCACTCAGTCTGCACTAG 57.333 47.619 0.00 0.00 0.00 2.57
1300 1431 2.294449 TCCACTCAGTCTGCACTAGT 57.706 50.000 0.00 0.00 0.00 2.57
1301 1432 2.163509 TCCACTCAGTCTGCACTAGTC 58.836 52.381 0.00 0.00 0.00 2.59
1302 1433 2.166829 CCACTCAGTCTGCACTAGTCT 58.833 52.381 0.00 0.00 0.00 3.24
1303 1434 2.163412 CCACTCAGTCTGCACTAGTCTC 59.837 54.545 0.00 0.00 0.00 3.36
1304 1435 2.080693 ACTCAGTCTGCACTAGTCTCG 58.919 52.381 0.00 0.00 0.00 4.04
1307 1438 2.226674 TCAGTCTGCACTAGTCTCGTTG 59.773 50.000 0.00 0.00 0.00 4.10
1308 1439 2.226674 CAGTCTGCACTAGTCTCGTTGA 59.773 50.000 0.00 0.00 0.00 3.18
1309 1440 2.885266 AGTCTGCACTAGTCTCGTTGAA 59.115 45.455 0.00 0.00 0.00 2.69
1326 1462 4.212004 CGTTGAACTTGAATCTCTGCAGAA 59.788 41.667 18.85 9.34 30.24 3.02
1328 1464 6.567321 CGTTGAACTTGAATCTCTGCAGAAAT 60.567 38.462 18.85 7.42 30.24 2.17
1329 1465 6.889301 TGAACTTGAATCTCTGCAGAAATT 57.111 33.333 15.13 15.13 30.24 1.82
1340 1476 7.678947 TCTCTGCAGAAATTTTAAGAGGAAG 57.321 36.000 18.85 0.00 33.53 3.46
1513 1661 7.977293 CACTCAAAATTTCCTGCATAATGATCA 59.023 33.333 0.00 0.00 0.00 2.92
1586 1734 2.221299 AGCAACCCTCGGCAACCTA 61.221 57.895 0.00 0.00 0.00 3.08
1812 2015 3.530067 GGTGGTATACCGGCGTCT 58.470 61.111 17.13 0.00 40.26 4.18
1819 2022 1.615165 TATACCGGCGTCTTTGGGCA 61.615 55.000 6.01 0.00 0.00 5.36
1909 2112 3.333804 CTCTCTCTTGTTCTTCTTGGGC 58.666 50.000 0.00 0.00 0.00 5.36
1962 2181 6.418819 CAGTTTCATTTCACACACCAGAAATC 59.581 38.462 0.00 0.00 41.20 2.17
2098 2343 7.004086 CCAAGAGGTAGGGATGCATATTTTTA 58.996 38.462 0.00 0.00 0.00 1.52
2106 2351 9.236006 GTAGGGATGCATATTTTTATGATCTGT 57.764 33.333 0.00 0.00 0.00 3.41
2135 2380 5.988310 TGACGGATTAAGTTCTCCAGTTA 57.012 39.130 5.51 0.20 0.00 2.24
2256 2507 1.066605 ACACGCTCAAGACTACACGTT 59.933 47.619 0.00 0.00 0.00 3.99
2281 2532 3.319135 CTGAGCAGCACTGAAACCT 57.681 52.632 0.81 0.00 0.00 3.50
2283 2534 2.771089 CTGAGCAGCACTGAAACCTTA 58.229 47.619 0.81 0.00 0.00 2.69
2285 2536 2.878406 TGAGCAGCACTGAAACCTTAAC 59.122 45.455 0.81 0.00 0.00 2.01
2288 2542 4.714632 AGCAGCACTGAAACCTTAACTTA 58.285 39.130 0.81 0.00 0.00 2.24
2364 2619 5.493809 CCTTTTATTCCGTTAAGAGTCCCA 58.506 41.667 0.00 0.00 0.00 4.37
2410 2665 4.753516 AAAAGGGAAAAGGTGAAAGGTG 57.246 40.909 0.00 0.00 0.00 4.00
2414 2669 2.364324 GGGAAAAGGTGAAAGGTGGTTC 59.636 50.000 0.00 0.00 0.00 3.62
2488 2743 6.428159 CCTTTAGTGCATATCCAGTGTTATCC 59.572 42.308 0.00 0.00 0.00 2.59
2492 2747 5.069914 AGTGCATATCCAGTGTTATCCGTTA 59.930 40.000 0.00 0.00 0.00 3.18
2493 2748 5.932303 GTGCATATCCAGTGTTATCCGTTAT 59.068 40.000 0.00 0.00 0.00 1.89
2535 3042 6.127026 GGAGAGTATAGAAACCCTTGACACAT 60.127 42.308 0.00 0.00 0.00 3.21
2540 3047 4.927267 AGAAACCCTTGACACATATGGA 57.073 40.909 7.80 0.00 0.00 3.41
2560 3067 3.181454 GGATCGGTAACTCCATTCCATGT 60.181 47.826 0.00 0.00 37.06 3.21
2562 3069 1.670811 CGGTAACTCCATTCCATGTGC 59.329 52.381 0.00 0.00 35.57 4.57
2584 3091 0.537143 TCCCTTGCTGTGTGCGAAAT 60.537 50.000 0.00 0.00 46.63 2.17
2587 3094 0.592637 CTTGCTGTGTGCGAAATGGA 59.407 50.000 0.00 0.00 46.63 3.41
2630 3137 2.704725 TTTGATGGCTCGAAAGTTGC 57.295 45.000 0.00 0.00 0.00 4.17
2641 3148 1.801178 CGAAAGTTGCCTCTGAACCTC 59.199 52.381 0.00 0.00 0.00 3.85
2655 3162 4.410228 TCTGAACCTCCTTATTCCAGATGG 59.590 45.833 0.00 0.00 0.00 3.51
2659 3166 3.217626 CCTCCTTATTCCAGATGGTTGC 58.782 50.000 0.00 0.00 36.34 4.17
2666 3173 2.380084 TCCAGATGGTTGCGACTTAC 57.620 50.000 3.59 0.00 36.34 2.34
2677 3184 1.134995 TGCGACTTACAGCCATCTGAG 60.135 52.381 0.00 0.00 42.95 3.35
2678 3185 1.804372 GCGACTTACAGCCATCTGAGG 60.804 57.143 0.00 0.00 42.95 3.86
2697 3204 6.776116 TCTGAGGTAACCACTATTATCGATGT 59.224 38.462 8.54 0.00 37.17 3.06
2698 3205 7.940688 TCTGAGGTAACCACTATTATCGATGTA 59.059 37.037 8.54 0.12 37.17 2.29
2713 3220 5.908916 TCGATGTATTTTGTTTGACGACA 57.091 34.783 0.00 0.00 0.00 4.35
2782 3289 6.293900 CCGCATGTAACAATGATAATTAGGCA 60.294 38.462 0.00 0.00 0.00 4.75
2783 3290 6.578545 CGCATGTAACAATGATAATTAGGCAC 59.421 38.462 0.00 0.00 0.00 5.01
2784 3291 7.520453 CGCATGTAACAATGATAATTAGGCACT 60.520 37.037 0.00 0.00 46.37 4.40
2785 3292 8.783093 GCATGTAACAATGATAATTAGGCACTA 58.217 33.333 0.00 0.00 41.75 2.74
2787 3294 8.671384 TGTAACAATGATAATTAGGCACTACC 57.329 34.615 0.00 0.00 42.67 3.18
2788 3295 7.717875 TGTAACAATGATAATTAGGCACTACCC 59.282 37.037 0.00 0.00 42.67 3.69
2789 3296 6.515512 ACAATGATAATTAGGCACTACCCT 57.484 37.500 0.00 0.00 42.67 4.34
2790 3297 6.911308 ACAATGATAATTAGGCACTACCCTT 58.089 36.000 0.00 0.00 42.67 3.95
2791 3298 6.998673 ACAATGATAATTAGGCACTACCCTTC 59.001 38.462 0.00 0.00 42.67 3.46
2792 3299 7.147302 ACAATGATAATTAGGCACTACCCTTCT 60.147 37.037 0.00 0.00 42.67 2.85
2793 3300 6.174720 TGATAATTAGGCACTACCCTTCTG 57.825 41.667 0.00 0.00 42.67 3.02
2794 3301 5.903010 TGATAATTAGGCACTACCCTTCTGA 59.097 40.000 0.00 0.00 42.67 3.27
2795 3302 6.558775 TGATAATTAGGCACTACCCTTCTGAT 59.441 38.462 0.00 0.00 42.67 2.90
2796 3303 5.717119 AATTAGGCACTACCCTTCTGATT 57.283 39.130 0.00 0.00 42.67 2.57
2797 3304 5.717119 ATTAGGCACTACCCTTCTGATTT 57.283 39.130 0.00 0.00 42.67 2.17
2798 3305 6.824958 ATTAGGCACTACCCTTCTGATTTA 57.175 37.500 0.00 0.00 42.67 1.40
2799 3306 6.824958 TTAGGCACTACCCTTCTGATTTAT 57.175 37.500 0.00 0.00 42.67 1.40
2800 3307 7.924358 TTAGGCACTACCCTTCTGATTTATA 57.076 36.000 0.00 0.00 42.67 0.98
2801 3308 8.506196 TTAGGCACTACCCTTCTGATTTATAT 57.494 34.615 0.00 0.00 42.67 0.86
2802 3309 7.394144 AGGCACTACCCTTCTGATTTATATT 57.606 36.000 0.00 0.00 40.58 1.28
2803 3310 8.506196 AGGCACTACCCTTCTGATTTATATTA 57.494 34.615 0.00 0.00 40.58 0.98
2804 3311 8.376270 AGGCACTACCCTTCTGATTTATATTAC 58.624 37.037 0.00 0.00 40.58 1.89
2805 3312 7.606839 GGCACTACCCTTCTGATTTATATTACC 59.393 40.741 0.00 0.00 0.00 2.85
2806 3313 7.331193 GCACTACCCTTCTGATTTATATTACCG 59.669 40.741 0.00 0.00 0.00 4.02
2807 3314 8.582437 CACTACCCTTCTGATTTATATTACCGA 58.418 37.037 0.00 0.00 0.00 4.69
2808 3315 8.583296 ACTACCCTTCTGATTTATATTACCGAC 58.417 37.037 0.00 0.00 0.00 4.79
2809 3316 7.613551 ACCCTTCTGATTTATATTACCGACT 57.386 36.000 0.00 0.00 0.00 4.18
2810 3317 7.442656 ACCCTTCTGATTTATATTACCGACTG 58.557 38.462 0.00 0.00 0.00 3.51
3138 3645 9.868277 AAAAATTGTACAAGATGACAGTTTGAA 57.132 25.926 14.65 0.00 36.14 2.69
3139 3646 9.520204 AAAATTGTACAAGATGACAGTTTGAAG 57.480 29.630 14.65 0.00 36.14 3.02
3140 3647 5.673337 TGTACAAGATGACAGTTTGAAGC 57.327 39.130 0.00 0.00 0.00 3.86
3141 3648 5.122519 TGTACAAGATGACAGTTTGAAGCA 58.877 37.500 0.00 2.86 0.00 3.91
3142 3649 5.588246 TGTACAAGATGACAGTTTGAAGCAA 59.412 36.000 0.00 0.00 0.00 3.91
3143 3650 4.925068 ACAAGATGACAGTTTGAAGCAAC 58.075 39.130 8.28 0.00 0.00 4.17
3144 3651 4.398988 ACAAGATGACAGTTTGAAGCAACA 59.601 37.500 8.28 0.00 0.00 3.33
3145 3652 5.105797 ACAAGATGACAGTTTGAAGCAACAA 60.106 36.000 8.28 0.00 0.00 2.83
3146 3653 5.779529 AGATGACAGTTTGAAGCAACAAT 57.220 34.783 0.00 0.00 0.00 2.71
3147 3654 5.766222 AGATGACAGTTTGAAGCAACAATC 58.234 37.500 0.00 0.00 0.00 2.67
3148 3655 5.533903 AGATGACAGTTTGAAGCAACAATCT 59.466 36.000 0.00 0.00 32.32 2.40
3149 3656 6.712095 AGATGACAGTTTGAAGCAACAATCTA 59.288 34.615 6.28 0.00 31.39 1.98
3150 3657 6.304356 TGACAGTTTGAAGCAACAATCTAG 57.696 37.500 6.28 0.00 31.39 2.43
3151 3658 5.113502 ACAGTTTGAAGCAACAATCTAGC 57.886 39.130 6.28 0.00 31.39 3.42
3152 3659 4.823989 ACAGTTTGAAGCAACAATCTAGCT 59.176 37.500 0.00 0.00 41.03 3.32
3161 3668 7.751768 AAGCAACAATCTAGCTTTTAGAACT 57.248 32.000 0.00 0.00 45.57 3.01
3162 3669 8.848474 AAGCAACAATCTAGCTTTTAGAACTA 57.152 30.769 0.00 0.00 45.57 2.24
3163 3670 8.848474 AGCAACAATCTAGCTTTTAGAACTAA 57.152 30.769 0.00 0.00 34.37 2.24
3164 3671 9.284968 AGCAACAATCTAGCTTTTAGAACTAAA 57.715 29.630 0.00 3.31 34.37 1.85
3165 3672 9.331106 GCAACAATCTAGCTTTTAGAACTAAAC 57.669 33.333 6.53 0.00 35.05 2.01
3173 3680 9.974750 CTAGCTTTTAGAACTAAACAACATAGC 57.025 33.333 13.74 13.74 35.05 2.97
3174 3681 8.391075 AGCTTTTAGAACTAAACAACATAGCA 57.609 30.769 19.28 1.75 35.50 3.49
3175 3682 8.846211 AGCTTTTAGAACTAAACAACATAGCAA 58.154 29.630 19.28 1.25 35.50 3.91
3176 3683 9.118236 GCTTTTAGAACTAAACAACATAGCAAG 57.882 33.333 15.41 6.39 34.29 4.01
3180 3687 9.772973 TTAGAACTAAACAACATAGCAAGAAGA 57.227 29.630 0.00 0.00 0.00 2.87
3181 3688 8.316640 AGAACTAAACAACATAGCAAGAAGAG 57.683 34.615 0.00 0.00 0.00 2.85
3182 3689 7.934120 AGAACTAAACAACATAGCAAGAAGAGT 59.066 33.333 0.00 0.00 0.00 3.24
3183 3690 9.204570 GAACTAAACAACATAGCAAGAAGAGTA 57.795 33.333 0.00 0.00 0.00 2.59
3184 3691 9.726438 AACTAAACAACATAGCAAGAAGAGTAT 57.274 29.630 0.00 0.00 0.00 2.12
3195 3702 7.644986 AGCAAGAAGAGTATAATATCAACGC 57.355 36.000 0.00 0.00 0.00 4.84
3196 3703 7.210174 AGCAAGAAGAGTATAATATCAACGCA 58.790 34.615 0.00 0.00 0.00 5.24
3197 3704 7.710907 AGCAAGAAGAGTATAATATCAACGCAA 59.289 33.333 0.00 0.00 0.00 4.85
3198 3705 8.335356 GCAAGAAGAGTATAATATCAACGCAAA 58.665 33.333 0.00 0.00 0.00 3.68
3199 3706 9.855361 CAAGAAGAGTATAATATCAACGCAAAG 57.145 33.333 0.00 0.00 0.00 2.77
3200 3707 9.817809 AAGAAGAGTATAATATCAACGCAAAGA 57.182 29.630 0.00 0.00 0.00 2.52
3201 3708 9.469807 AGAAGAGTATAATATCAACGCAAAGAG 57.530 33.333 0.00 0.00 0.00 2.85
3202 3709 9.250624 GAAGAGTATAATATCAACGCAAAGAGT 57.749 33.333 0.00 0.00 0.00 3.24
3209 3716 3.602390 TCAACGCAAAGAGTAACTTGC 57.398 42.857 0.00 0.00 38.98 4.01
3210 3717 2.939756 TCAACGCAAAGAGTAACTTGCA 59.060 40.909 7.48 0.00 38.98 4.08
3211 3718 3.375610 TCAACGCAAAGAGTAACTTGCAA 59.624 39.130 0.00 0.00 38.98 4.08
3212 3719 3.609103 ACGCAAAGAGTAACTTGCAAG 57.391 42.857 24.84 24.84 38.98 4.01
3213 3720 2.290641 ACGCAAAGAGTAACTTGCAAGG 59.709 45.455 29.18 12.28 38.98 3.61
3214 3721 2.548057 CGCAAAGAGTAACTTGCAAGGA 59.452 45.455 29.18 14.76 38.98 3.36
3215 3722 3.003275 CGCAAAGAGTAACTTGCAAGGAA 59.997 43.478 29.18 14.55 38.98 3.36
3216 3723 4.540824 GCAAAGAGTAACTTGCAAGGAAG 58.459 43.478 29.18 6.49 38.98 3.46
3217 3724 4.036852 GCAAAGAGTAACTTGCAAGGAAGT 59.963 41.667 29.18 18.84 38.98 3.01
3218 3725 5.238650 GCAAAGAGTAACTTGCAAGGAAGTA 59.761 40.000 29.18 13.19 38.98 2.24
3219 3726 6.238648 GCAAAGAGTAACTTGCAAGGAAGTAA 60.239 38.462 29.18 6.04 38.98 2.24
3220 3727 7.355778 CAAAGAGTAACTTGCAAGGAAGTAAG 58.644 38.462 29.18 3.67 38.98 2.34
3221 3728 6.420913 AGAGTAACTTGCAAGGAAGTAAGA 57.579 37.500 29.18 3.44 35.01 2.10
3222 3729 6.459923 AGAGTAACTTGCAAGGAAGTAAGAG 58.540 40.000 29.18 2.09 35.01 2.85
3223 3730 4.998033 AGTAACTTGCAAGGAAGTAAGAGC 59.002 41.667 29.18 7.97 35.01 4.09
3224 3731 3.778954 ACTTGCAAGGAAGTAAGAGCT 57.221 42.857 29.18 1.60 34.29 4.09
3225 3732 3.669536 ACTTGCAAGGAAGTAAGAGCTC 58.330 45.455 29.18 5.27 34.29 4.09
3226 3733 3.326297 ACTTGCAAGGAAGTAAGAGCTCT 59.674 43.478 29.18 11.45 34.29 4.09
3227 3734 4.528596 ACTTGCAAGGAAGTAAGAGCTCTA 59.471 41.667 29.18 2.57 34.29 2.43
3228 3735 4.727507 TGCAAGGAAGTAAGAGCTCTAG 57.272 45.455 18.59 0.17 0.00 2.43
3229 3736 3.449018 TGCAAGGAAGTAAGAGCTCTAGG 59.551 47.826 18.59 0.31 0.00 3.02
3230 3737 3.181470 GCAAGGAAGTAAGAGCTCTAGGG 60.181 52.174 18.59 0.82 0.00 3.53
3231 3738 4.027437 CAAGGAAGTAAGAGCTCTAGGGT 58.973 47.826 18.59 3.41 0.00 4.34
3232 3739 4.340328 AGGAAGTAAGAGCTCTAGGGTT 57.660 45.455 18.59 8.42 0.00 4.11
3233 3740 5.469210 AGGAAGTAAGAGCTCTAGGGTTA 57.531 43.478 18.59 1.82 0.00 2.85
3234 3741 5.451354 AGGAAGTAAGAGCTCTAGGGTTAG 58.549 45.833 18.59 0.00 0.00 2.34
3235 3742 5.194132 AGGAAGTAAGAGCTCTAGGGTTAGA 59.806 44.000 18.59 0.00 34.76 2.10
3236 3743 6.072649 GGAAGTAAGAGCTCTAGGGTTAGAT 58.927 44.000 18.59 0.00 35.43 1.98
3237 3744 7.073981 AGGAAGTAAGAGCTCTAGGGTTAGATA 59.926 40.741 18.59 0.00 35.43 1.98
3238 3745 7.724951 GGAAGTAAGAGCTCTAGGGTTAGATAA 59.275 40.741 18.59 0.00 35.43 1.75
3239 3746 9.304335 GAAGTAAGAGCTCTAGGGTTAGATAAT 57.696 37.037 18.59 0.00 35.43 1.28
3240 3747 8.644374 AGTAAGAGCTCTAGGGTTAGATAATG 57.356 38.462 18.59 0.00 35.43 1.90
3241 3748 5.993748 AGAGCTCTAGGGTTAGATAATGC 57.006 43.478 16.50 0.00 35.43 3.56
3242 3749 5.398236 AGAGCTCTAGGGTTAGATAATGCA 58.602 41.667 16.50 0.00 35.43 3.96
3243 3750 5.841237 AGAGCTCTAGGGTTAGATAATGCAA 59.159 40.000 16.50 0.00 35.43 4.08
3244 3751 6.327626 AGAGCTCTAGGGTTAGATAATGCAAA 59.672 38.462 16.50 0.00 35.43 3.68
3245 3752 6.292150 AGCTCTAGGGTTAGATAATGCAAAC 58.708 40.000 0.00 0.00 35.43 2.93
3246 3753 6.055588 GCTCTAGGGTTAGATAATGCAAACA 58.944 40.000 0.00 0.00 35.43 2.83
3247 3754 6.017852 GCTCTAGGGTTAGATAATGCAAACAC 60.018 42.308 0.00 0.00 35.43 3.32
3248 3755 6.953101 TCTAGGGTTAGATAATGCAAACACA 58.047 36.000 2.07 0.00 30.96 3.72
3249 3756 7.573710 TCTAGGGTTAGATAATGCAAACACAT 58.426 34.615 2.07 0.00 30.96 3.21
3250 3757 6.455360 AGGGTTAGATAATGCAAACACATG 57.545 37.500 2.07 0.00 0.00 3.21
3251 3758 5.360714 AGGGTTAGATAATGCAAACACATGG 59.639 40.000 0.00 0.00 0.00 3.66
3252 3759 5.451798 GGGTTAGATAATGCAAACACATGGG 60.452 44.000 0.00 0.00 0.00 4.00
3253 3760 5.359576 GGTTAGATAATGCAAACACATGGGA 59.640 40.000 0.00 0.00 0.00 4.37
3254 3761 4.989279 AGATAATGCAAACACATGGGAC 57.011 40.909 0.00 0.00 0.00 4.46
3267 3774 3.865477 TGGGACACGGCGATATTTT 57.135 47.368 16.62 0.00 0.00 1.82
3268 3775 2.116827 TGGGACACGGCGATATTTTT 57.883 45.000 16.62 0.00 0.00 1.94
3269 3776 2.011222 TGGGACACGGCGATATTTTTC 58.989 47.619 16.62 0.00 0.00 2.29
3270 3777 1.332686 GGGACACGGCGATATTTTTCC 59.667 52.381 16.62 1.97 0.00 3.13
3271 3778 2.285977 GGACACGGCGATATTTTTCCT 58.714 47.619 16.62 0.00 0.00 3.36
3272 3779 2.031683 GGACACGGCGATATTTTTCCTG 59.968 50.000 16.62 0.00 0.00 3.86
3273 3780 2.676342 GACACGGCGATATTTTTCCTGT 59.324 45.455 16.62 2.38 0.00 4.00
3274 3781 2.418628 ACACGGCGATATTTTTCCTGTG 59.581 45.455 16.62 0.00 33.05 3.66
3275 3782 2.014128 ACGGCGATATTTTTCCTGTGG 58.986 47.619 16.62 0.00 0.00 4.17
3276 3783 2.014128 CGGCGATATTTTTCCTGTGGT 58.986 47.619 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.776933 ACATCTGCATATGTACTGTGTTAAG 57.223 36.000 15.45 0.00 38.31 1.85
23 24 3.555547 GTGCGTATGTATGAACATCTGCA 59.444 43.478 11.33 11.33 42.92 4.41
31 32 8.357402 AGATAAGTGTATGTGCGTATGTATGAA 58.643 33.333 0.00 0.00 0.00 2.57
53 54 2.280445 CGTGCGTGCGTTCATAAAGATA 59.720 45.455 0.00 0.00 0.00 1.98
57 58 1.154562 GCGTGCGTGCGTTCATAAA 60.155 52.632 3.11 0.00 0.00 1.40
70 71 2.004583 TAGGAATAGTGTGTGCGTGC 57.995 50.000 0.00 0.00 0.00 5.34
80 81 8.158132 TCTCTCGAATGTACTCATAGGAATAGT 58.842 37.037 0.00 0.00 33.49 2.12
85 86 6.998673 TCAATCTCTCGAATGTACTCATAGGA 59.001 38.462 0.00 0.00 33.49 2.94
86 87 7.208225 TCAATCTCTCGAATGTACTCATAGG 57.792 40.000 0.00 0.00 33.49 2.57
94 95 2.034685 CCGGCTCAATCTCTCGAATGTA 59.965 50.000 0.00 0.00 0.00 2.29
97 98 0.249657 GCCGGCTCAATCTCTCGAAT 60.250 55.000 22.15 0.00 0.00 3.34
99 100 1.395045 ATGCCGGCTCAATCTCTCGA 61.395 55.000 29.70 1.81 0.00 4.04
144 146 5.921976 TCATGTCGACTACAAAAACGTATGT 59.078 36.000 17.92 6.76 42.70 2.29
149 151 4.131714 CGTTCATGTCGACTACAAAAACG 58.868 43.478 17.92 17.63 45.37 3.60
151 153 5.045215 AGACGTTCATGTCGACTACAAAAA 58.955 37.500 17.92 0.00 42.70 1.94
152 154 4.613944 AGACGTTCATGTCGACTACAAAA 58.386 39.130 17.92 1.49 42.70 2.44
155 157 2.161012 GGAGACGTTCATGTCGACTACA 59.839 50.000 17.92 0.00 43.70 2.74
161 163 0.179134 GGGAGGAGACGTTCATGTCG 60.179 60.000 10.36 10.36 43.70 4.35
167 169 0.966920 TTGAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
262 264 1.754621 TGACCAGGCCAAAAACGCA 60.755 52.632 5.01 0.00 0.00 5.24
381 387 9.849166 GTTCTTCATATCCGGAAATAACAAAAA 57.151 29.630 9.01 0.00 0.00 1.94
383 389 8.568676 TGTTCTTCATATCCGGAAATAACAAA 57.431 30.769 9.01 0.00 32.13 2.83
408 414 1.095228 CAAACGGCCGTGGCTCATAT 61.095 55.000 34.95 10.92 41.60 1.78
423 429 4.863152 AGTGAACAATTTTGCTGCAAAC 57.137 36.364 25.99 14.43 32.79 2.93
430 436 4.762251 AGAGGGAGTAGTGAACAATTTTGC 59.238 41.667 0.00 0.00 0.00 3.68
495 501 6.819649 TCCGTCTCATAATATTGGACGTTTTT 59.180 34.615 21.42 0.00 45.22 1.94
496 502 6.342906 TCCGTCTCATAATATTGGACGTTTT 58.657 36.000 21.42 0.00 45.22 2.43
497 503 5.909477 TCCGTCTCATAATATTGGACGTTT 58.091 37.500 21.42 0.00 45.22 3.60
498 504 5.509163 CCTCCGTCTCATAATATTGGACGTT 60.509 44.000 21.42 0.00 45.22 3.99
499 505 4.022242 CCTCCGTCTCATAATATTGGACGT 60.022 45.833 21.42 0.00 45.22 4.34
500 506 4.486090 CCTCCGTCTCATAATATTGGACG 58.514 47.826 18.82 18.82 45.92 4.79
501 507 4.527038 TCCCTCCGTCTCATAATATTGGAC 59.473 45.833 0.00 1.24 0.00 4.02
502 508 4.747583 TCCCTCCGTCTCATAATATTGGA 58.252 43.478 0.00 0.00 0.00 3.53
503 509 4.621747 GCTCCCTCCGTCTCATAATATTGG 60.622 50.000 0.00 0.00 0.00 3.16
504 510 4.021104 TGCTCCCTCCGTCTCATAATATTG 60.021 45.833 0.00 0.00 0.00 1.90
505 511 4.160329 TGCTCCCTCCGTCTCATAATATT 58.840 43.478 0.00 0.00 0.00 1.28
506 512 3.766591 CTGCTCCCTCCGTCTCATAATAT 59.233 47.826 0.00 0.00 0.00 1.28
507 513 3.157881 CTGCTCCCTCCGTCTCATAATA 58.842 50.000 0.00 0.00 0.00 0.98
508 514 1.967066 CTGCTCCCTCCGTCTCATAAT 59.033 52.381 0.00 0.00 0.00 1.28
509 515 1.403814 CTGCTCCCTCCGTCTCATAA 58.596 55.000 0.00 0.00 0.00 1.90
510 516 0.468214 CCTGCTCCCTCCGTCTCATA 60.468 60.000 0.00 0.00 0.00 2.15
511 517 1.760086 CCTGCTCCCTCCGTCTCAT 60.760 63.158 0.00 0.00 0.00 2.90
512 518 2.363018 CCTGCTCCCTCCGTCTCA 60.363 66.667 0.00 0.00 0.00 3.27
513 519 2.363147 ACCTGCTCCCTCCGTCTC 60.363 66.667 0.00 0.00 0.00 3.36
514 520 2.363147 GACCTGCTCCCTCCGTCT 60.363 66.667 0.00 0.00 0.00 4.18
515 521 3.462678 GGACCTGCTCCCTCCGTC 61.463 72.222 0.00 0.00 31.83 4.79
522 528 1.923356 TGATTTTTGGGACCTGCTCC 58.077 50.000 0.00 0.00 38.55 4.70
523 529 2.827921 ACATGATTTTTGGGACCTGCTC 59.172 45.455 0.00 0.00 0.00 4.26
524 530 2.893424 ACATGATTTTTGGGACCTGCT 58.107 42.857 0.00 0.00 0.00 4.24
525 531 4.016444 TCTACATGATTTTTGGGACCTGC 58.984 43.478 0.00 0.00 0.00 4.85
526 532 6.209391 ACTTTCTACATGATTTTTGGGACCTG 59.791 38.462 0.00 0.00 0.00 4.00
582 592 0.179129 CCAATTCATGCGGCCAGAAC 60.179 55.000 2.24 0.00 0.00 3.01
584 594 0.611618 AACCAATTCATGCGGCCAGA 60.612 50.000 2.24 0.00 0.00 3.86
649 659 0.403271 AGTGGTGCATTTCCTCTGCT 59.597 50.000 0.00 0.00 40.34 4.24
653 663 3.378427 GTGGAATAGTGGTGCATTTCCTC 59.622 47.826 0.00 0.00 37.36 3.71
655 665 3.129287 CAGTGGAATAGTGGTGCATTTCC 59.871 47.826 0.00 0.00 37.06 3.13
683 693 2.673368 CGCTATTCCACTCAGTCAAACC 59.327 50.000 0.00 0.00 0.00 3.27
752 766 0.881118 ACGTTCACCAATCACCATGC 59.119 50.000 0.00 0.00 0.00 4.06
759 773 2.668457 CTGCAGAGTACGTTCACCAATC 59.332 50.000 8.42 0.00 0.00 2.67
760 774 2.612972 CCTGCAGAGTACGTTCACCAAT 60.613 50.000 17.39 0.00 0.00 3.16
761 775 1.270094 CCTGCAGAGTACGTTCACCAA 60.270 52.381 17.39 0.00 0.00 3.67
762 776 0.317160 CCTGCAGAGTACGTTCACCA 59.683 55.000 17.39 0.00 0.00 4.17
763 777 1.014564 GCCTGCAGAGTACGTTCACC 61.015 60.000 17.39 0.00 0.00 4.02
764 778 1.014564 GGCCTGCAGAGTACGTTCAC 61.015 60.000 17.39 0.00 0.00 3.18
780 794 1.340248 TGGAAGAATCGTAGATCGGCC 59.660 52.381 0.00 0.00 45.12 6.13
871 885 2.243736 ACTTTCCACTTTCCAGGTCCAA 59.756 45.455 0.00 0.00 0.00 3.53
872 886 1.850345 ACTTTCCACTTTCCAGGTCCA 59.150 47.619 0.00 0.00 0.00 4.02
878 892 4.023291 AGCTTTGAACTTTCCACTTTCCA 58.977 39.130 0.00 0.00 0.00 3.53
879 893 4.655762 AGCTTTGAACTTTCCACTTTCC 57.344 40.909 0.00 0.00 0.00 3.13
880 894 4.735338 CGAAGCTTTGAACTTTCCACTTTC 59.265 41.667 8.08 0.00 0.00 2.62
881 895 4.440112 CCGAAGCTTTGAACTTTCCACTTT 60.440 41.667 15.72 0.00 0.00 2.66
882 896 3.066760 CCGAAGCTTTGAACTTTCCACTT 59.933 43.478 15.72 0.00 0.00 3.16
883 897 2.618709 CCGAAGCTTTGAACTTTCCACT 59.381 45.455 15.72 0.00 0.00 4.00
884 898 2.287608 CCCGAAGCTTTGAACTTTCCAC 60.288 50.000 15.72 0.00 0.00 4.02
885 899 1.953686 CCCGAAGCTTTGAACTTTCCA 59.046 47.619 15.72 0.00 0.00 3.53
933 963 2.192187 GTAGCGGAGGGACGGGTAG 61.192 68.421 0.00 0.00 33.72 3.18
934 964 2.124151 GTAGCGGAGGGACGGGTA 60.124 66.667 0.00 0.00 0.00 3.69
969 1003 0.322546 GGGAGCCTAAGGTGTGTTGG 60.323 60.000 0.00 0.00 0.00 3.77
980 1014 0.252696 TGCTGGAAGAAGGGAGCCTA 60.253 55.000 0.00 0.00 34.07 3.93
986 1020 1.660560 CGCCATTGCTGGAAGAAGGG 61.661 60.000 0.00 0.00 46.37 3.95
1086 1120 0.247736 CCTGCCTTTGCGAGTAGAGT 59.752 55.000 0.00 0.00 41.78 3.24
1262 1393 8.215050 TGAGTGGAAAAGGTCTTCTAAACATTA 58.785 33.333 0.00 0.00 0.00 1.90
1265 1396 5.996644 TGAGTGGAAAAGGTCTTCTAAACA 58.003 37.500 0.00 0.00 0.00 2.83
1269 1400 5.011125 CAGACTGAGTGGAAAAGGTCTTCTA 59.989 44.000 0.00 0.00 32.65 2.10
1282 1413 2.163412 GAGACTAGTGCAGACTGAGTGG 59.837 54.545 6.65 0.00 33.21 4.00
1283 1414 2.159585 CGAGACTAGTGCAGACTGAGTG 60.160 54.545 6.65 0.00 33.21 3.51
1284 1415 2.080693 CGAGACTAGTGCAGACTGAGT 58.919 52.381 6.65 0.00 33.21 3.41
1285 1416 2.080693 ACGAGACTAGTGCAGACTGAG 58.919 52.381 6.65 0.00 33.21 3.35
1287 1418 2.226674 TCAACGAGACTAGTGCAGACTG 59.773 50.000 0.00 0.00 33.21 3.51
1288 1419 2.505405 TCAACGAGACTAGTGCAGACT 58.495 47.619 0.00 0.00 36.07 3.24
1289 1420 2.981140 GTTCAACGAGACTAGTGCAGAC 59.019 50.000 0.00 0.00 0.00 3.51
1290 1421 2.885266 AGTTCAACGAGACTAGTGCAGA 59.115 45.455 0.00 0.00 0.00 4.26
1292 1423 3.067601 TCAAGTTCAACGAGACTAGTGCA 59.932 43.478 0.00 0.00 0.00 4.57
1293 1424 3.639538 TCAAGTTCAACGAGACTAGTGC 58.360 45.455 0.00 0.00 0.00 4.40
1294 1425 6.153067 AGATTCAAGTTCAACGAGACTAGTG 58.847 40.000 0.00 0.00 0.00 2.74
1298 1429 5.226396 CAGAGATTCAAGTTCAACGAGACT 58.774 41.667 0.00 0.00 0.00 3.24
1299 1430 4.143221 GCAGAGATTCAAGTTCAACGAGAC 60.143 45.833 0.00 0.00 0.00 3.36
1300 1431 3.990469 GCAGAGATTCAAGTTCAACGAGA 59.010 43.478 0.00 0.00 0.00 4.04
1301 1432 3.742882 TGCAGAGATTCAAGTTCAACGAG 59.257 43.478 0.00 0.00 0.00 4.18
1302 1433 3.727726 TGCAGAGATTCAAGTTCAACGA 58.272 40.909 0.00 0.00 0.00 3.85
1303 1434 3.742882 TCTGCAGAGATTCAAGTTCAACG 59.257 43.478 13.74 0.00 0.00 4.10
1304 1435 5.679734 TTCTGCAGAGATTCAAGTTCAAC 57.320 39.130 17.43 0.00 0.00 3.18
1307 1438 9.683069 TTAAAATTTCTGCAGAGATTCAAGTTC 57.317 29.630 27.27 0.00 29.84 3.01
1308 1439 9.688592 CTTAAAATTTCTGCAGAGATTCAAGTT 57.311 29.630 27.27 20.60 29.84 2.66
1309 1440 9.071276 TCTTAAAATTTCTGCAGAGATTCAAGT 57.929 29.630 29.64 20.61 30.83 3.16
1340 1476 4.683781 CAGCGAGGAAGAACTCTATTATGC 59.316 45.833 0.00 0.00 35.33 3.14
1347 1485 0.037790 GCACAGCGAGGAAGAACTCT 60.038 55.000 0.00 0.00 35.33 3.24
1513 1661 7.237263 ACAGCTCCCTATGAAGATGAGAATATT 59.763 37.037 0.00 0.00 0.00 1.28
1628 1776 4.971125 GAGGCTGGTATCGCGCCC 62.971 72.222 0.00 1.09 44.84 6.13
1812 2015 0.881118 GCTTCGTCAGATTGCCCAAA 59.119 50.000 0.00 0.00 0.00 3.28
1819 2022 5.506317 CCAAAGTTTGAAGCTTCGTCAGATT 60.506 40.000 21.11 9.23 32.16 2.40
1909 2112 4.938080 ACTACTCACAGTTCAGTCAAGTG 58.062 43.478 0.00 0.00 40.84 3.16
1962 2181 1.373570 GAAGGAGGAAAGTGGATGCG 58.626 55.000 0.00 0.00 0.00 4.73
2098 2343 3.291584 TCCGTCAAGAGCTACAGATCAT 58.708 45.455 0.00 0.00 31.88 2.45
2106 2351 5.163540 GGAGAACTTAATCCGTCAAGAGCTA 60.164 44.000 0.00 0.00 0.00 3.32
2165 2412 5.809562 TGTGAGCACAAATTAAACAAACCTG 59.190 36.000 0.00 0.00 38.56 4.00
2364 2619 7.667575 TCTCTCTAGAAATGGATGTAAGCTT 57.332 36.000 3.48 3.48 0.00 3.74
2410 2665 4.563976 GCACTGATTACAATGCATTGAACC 59.436 41.667 38.99 24.93 46.53 3.62
2560 3067 1.737355 GCACACAGCAAGGGAAAGCA 61.737 55.000 0.00 0.00 44.79 3.91
2562 3069 1.165907 TCGCACACAGCAAGGGAAAG 61.166 55.000 0.00 0.00 46.13 2.62
2584 3091 0.032912 ATGGCCATCACATGCTTCCA 60.033 50.000 14.09 0.00 0.00 3.53
2587 3094 2.691526 CACTAATGGCCATCACATGCTT 59.308 45.455 21.08 3.63 0.00 3.91
2630 3137 4.033709 TCTGGAATAAGGAGGTTCAGAGG 58.966 47.826 0.00 0.00 0.00 3.69
2641 3148 2.614057 GTCGCAACCATCTGGAATAAGG 59.386 50.000 2.55 0.00 38.94 2.69
2655 3162 1.394917 CAGATGGCTGTAAGTCGCAAC 59.605 52.381 0.00 0.00 45.90 4.17
2659 3166 1.478510 ACCTCAGATGGCTGTAAGTCG 59.521 52.381 0.00 0.00 45.90 4.18
2666 3173 1.556911 AGTGGTTACCTCAGATGGCTG 59.443 52.381 2.07 0.00 43.67 4.85
2698 3205 8.999431 ACTATTGTAGATGTCGTCAAACAAAAT 58.001 29.630 13.74 5.11 38.02 1.82
2723 3230 8.695284 GTCTCACAATCTCGATACAATGATAAC 58.305 37.037 0.00 0.00 0.00 1.89
2742 3249 2.825982 CGGGGGTTGTGTCTCACA 59.174 61.111 0.00 0.00 43.02 3.58
2755 3262 5.452078 AATTATCATTGTTACATGCGGGG 57.548 39.130 0.00 0.00 0.00 5.73
2758 3265 6.578545 GTGCCTAATTATCATTGTTACATGCG 59.421 38.462 0.00 0.00 0.00 4.73
2782 3289 8.583296 GTCGGTAATATAAATCAGAAGGGTAGT 58.417 37.037 0.00 0.00 0.00 2.73
2783 3290 8.804204 AGTCGGTAATATAAATCAGAAGGGTAG 58.196 37.037 0.00 0.00 0.00 3.18
2784 3291 8.582437 CAGTCGGTAATATAAATCAGAAGGGTA 58.418 37.037 0.00 0.00 0.00 3.69
2785 3292 7.442656 CAGTCGGTAATATAAATCAGAAGGGT 58.557 38.462 0.00 0.00 0.00 4.34
2786 3293 7.891183 CAGTCGGTAATATAAATCAGAAGGG 57.109 40.000 0.00 0.00 0.00 3.95
3112 3619 9.868277 TTCAAACTGTCATCTTGTACAATTTTT 57.132 25.926 9.13 0.00 0.00 1.94
3113 3620 9.520204 CTTCAAACTGTCATCTTGTACAATTTT 57.480 29.630 9.13 0.00 0.00 1.82
3114 3621 7.649306 GCTTCAAACTGTCATCTTGTACAATTT 59.351 33.333 9.13 1.33 0.00 1.82
3115 3622 7.141363 GCTTCAAACTGTCATCTTGTACAATT 58.859 34.615 9.13 0.00 0.00 2.32
3116 3623 6.262944 TGCTTCAAACTGTCATCTTGTACAAT 59.737 34.615 9.13 0.00 0.00 2.71
3117 3624 5.588246 TGCTTCAAACTGTCATCTTGTACAA 59.412 36.000 8.28 8.28 0.00 2.41
3118 3625 5.122519 TGCTTCAAACTGTCATCTTGTACA 58.877 37.500 0.00 0.00 0.00 2.90
3119 3626 5.673337 TGCTTCAAACTGTCATCTTGTAC 57.327 39.130 0.00 0.00 0.00 2.90
3120 3627 5.588246 TGTTGCTTCAAACTGTCATCTTGTA 59.412 36.000 0.00 0.00 0.00 2.41
3121 3628 4.398988 TGTTGCTTCAAACTGTCATCTTGT 59.601 37.500 0.00 0.00 0.00 3.16
3122 3629 4.923893 TGTTGCTTCAAACTGTCATCTTG 58.076 39.130 0.00 0.00 0.00 3.02
3123 3630 5.581126 TTGTTGCTTCAAACTGTCATCTT 57.419 34.783 0.00 0.00 0.00 2.40
3124 3631 5.533903 AGATTGTTGCTTCAAACTGTCATCT 59.466 36.000 4.22 0.00 31.17 2.90
3125 3632 5.766222 AGATTGTTGCTTCAAACTGTCATC 58.234 37.500 4.22 0.00 31.17 2.92
3126 3633 5.779529 AGATTGTTGCTTCAAACTGTCAT 57.220 34.783 4.22 0.00 31.17 3.06
3127 3634 5.277974 GCTAGATTGTTGCTTCAAACTGTCA 60.278 40.000 11.85 0.00 33.67 3.58
3128 3635 5.049129 AGCTAGATTGTTGCTTCAAACTGTC 60.049 40.000 11.85 6.05 33.67 3.51
3129 3636 4.823989 AGCTAGATTGTTGCTTCAAACTGT 59.176 37.500 11.85 0.00 33.67 3.55
3130 3637 5.368256 AGCTAGATTGTTGCTTCAAACTG 57.632 39.130 11.85 6.02 33.67 3.16
3131 3638 6.396829 AAAGCTAGATTGTTGCTTCAAACT 57.603 33.333 3.19 8.54 44.94 2.66
3132 3639 8.076178 TCTAAAAGCTAGATTGTTGCTTCAAAC 58.924 33.333 3.19 0.00 44.94 2.93
3133 3640 8.165239 TCTAAAAGCTAGATTGTTGCTTCAAA 57.835 30.769 3.19 0.00 44.94 2.69
3134 3641 7.744087 TCTAAAAGCTAGATTGTTGCTTCAA 57.256 32.000 3.19 0.00 44.94 2.69
3135 3642 7.445402 AGTTCTAAAAGCTAGATTGTTGCTTCA 59.555 33.333 3.19 0.00 44.94 3.02
3136 3643 7.811653 AGTTCTAAAAGCTAGATTGTTGCTTC 58.188 34.615 3.19 0.00 44.94 3.86
3138 3645 8.848474 TTAGTTCTAAAAGCTAGATTGTTGCT 57.152 30.769 0.00 0.00 38.87 3.91
3139 3646 9.331106 GTTTAGTTCTAAAAGCTAGATTGTTGC 57.669 33.333 0.00 0.00 0.00 4.17
3147 3654 9.974750 GCTATGTTGTTTAGTTCTAAAAGCTAG 57.025 33.333 6.59 0.00 0.00 3.42
3148 3655 9.496873 TGCTATGTTGTTTAGTTCTAAAAGCTA 57.503 29.630 17.43 8.07 0.00 3.32
3149 3656 8.391075 TGCTATGTTGTTTAGTTCTAAAAGCT 57.609 30.769 17.43 0.00 0.00 3.74
3150 3657 9.118236 CTTGCTATGTTGTTTAGTTCTAAAAGC 57.882 33.333 13.14 13.14 0.00 3.51
3154 3661 9.772973 TCTTCTTGCTATGTTGTTTAGTTCTAA 57.227 29.630 0.00 0.00 0.00 2.10
3155 3662 9.424319 CTCTTCTTGCTATGTTGTTTAGTTCTA 57.576 33.333 0.00 0.00 0.00 2.10
3156 3663 7.934120 ACTCTTCTTGCTATGTTGTTTAGTTCT 59.066 33.333 0.00 0.00 0.00 3.01
3157 3664 8.089115 ACTCTTCTTGCTATGTTGTTTAGTTC 57.911 34.615 0.00 0.00 0.00 3.01
3158 3665 9.726438 ATACTCTTCTTGCTATGTTGTTTAGTT 57.274 29.630 0.00 0.00 0.00 2.24
3169 3676 9.360093 GCGTTGATATTATACTCTTCTTGCTAT 57.640 33.333 0.00 0.00 0.00 2.97
3170 3677 8.357402 TGCGTTGATATTATACTCTTCTTGCTA 58.643 33.333 0.00 0.00 0.00 3.49
3171 3678 7.210174 TGCGTTGATATTATACTCTTCTTGCT 58.790 34.615 0.00 0.00 0.00 3.91
3172 3679 7.408132 TGCGTTGATATTATACTCTTCTTGC 57.592 36.000 0.00 0.00 0.00 4.01
3173 3680 9.855361 CTTTGCGTTGATATTATACTCTTCTTG 57.145 33.333 0.00 0.00 0.00 3.02
3174 3681 9.817809 TCTTTGCGTTGATATTATACTCTTCTT 57.182 29.630 0.00 0.00 0.00 2.52
3175 3682 9.469807 CTCTTTGCGTTGATATTATACTCTTCT 57.530 33.333 0.00 0.00 0.00 2.85
3176 3683 9.250624 ACTCTTTGCGTTGATATTATACTCTTC 57.749 33.333 0.00 0.00 0.00 2.87
3183 3690 8.122952 GCAAGTTACTCTTTGCGTTGATATTAT 58.877 33.333 0.00 0.00 33.63 1.28
3184 3691 7.118535 TGCAAGTTACTCTTTGCGTTGATATTA 59.881 33.333 3.53 0.00 34.98 0.98
3185 3692 6.072728 TGCAAGTTACTCTTTGCGTTGATATT 60.073 34.615 3.53 0.00 34.98 1.28
3186 3693 5.411361 TGCAAGTTACTCTTTGCGTTGATAT 59.589 36.000 3.53 0.00 34.98 1.63
3187 3694 4.752604 TGCAAGTTACTCTTTGCGTTGATA 59.247 37.500 3.53 0.00 34.98 2.15
3188 3695 3.563808 TGCAAGTTACTCTTTGCGTTGAT 59.436 39.130 3.53 0.00 34.98 2.57
3189 3696 2.939756 TGCAAGTTACTCTTTGCGTTGA 59.060 40.909 3.53 0.00 34.98 3.18
3190 3697 3.332761 TGCAAGTTACTCTTTGCGTTG 57.667 42.857 3.53 0.00 34.98 4.10
3191 3698 3.243068 CCTTGCAAGTTACTCTTTGCGTT 60.243 43.478 24.35 0.00 34.98 4.84
3192 3699 2.290641 CCTTGCAAGTTACTCTTTGCGT 59.709 45.455 24.35 0.00 34.98 5.24
3193 3700 2.548057 TCCTTGCAAGTTACTCTTTGCG 59.452 45.455 24.35 5.25 34.98 4.85
3194 3701 4.036852 ACTTCCTTGCAAGTTACTCTTTGC 59.963 41.667 24.35 0.98 32.34 3.68
3195 3702 5.757850 ACTTCCTTGCAAGTTACTCTTTG 57.242 39.130 24.35 6.47 32.34 2.77
3196 3703 7.280356 TCTTACTTCCTTGCAAGTTACTCTTT 58.720 34.615 24.35 3.73 37.75 2.52
3197 3704 6.827727 TCTTACTTCCTTGCAAGTTACTCTT 58.172 36.000 24.35 5.23 37.75 2.85
3198 3705 6.420913 TCTTACTTCCTTGCAAGTTACTCT 57.579 37.500 24.35 4.99 37.75 3.24
3199 3706 5.120986 GCTCTTACTTCCTTGCAAGTTACTC 59.879 44.000 24.35 0.51 37.75 2.59
3200 3707 4.998033 GCTCTTACTTCCTTGCAAGTTACT 59.002 41.667 24.35 7.35 37.75 2.24
3201 3708 4.998033 AGCTCTTACTTCCTTGCAAGTTAC 59.002 41.667 24.35 2.84 37.75 2.50
3202 3709 5.012148 AGAGCTCTTACTTCCTTGCAAGTTA 59.988 40.000 24.35 10.01 37.75 2.24
3203 3710 4.068599 GAGCTCTTACTTCCTTGCAAGTT 58.931 43.478 24.35 8.74 37.75 2.66
3204 3711 3.326297 AGAGCTCTTACTTCCTTGCAAGT 59.674 43.478 24.35 9.82 39.94 3.16
3205 3712 3.936564 AGAGCTCTTACTTCCTTGCAAG 58.063 45.455 19.93 19.93 0.00 4.01
3206 3713 4.081420 CCTAGAGCTCTTACTTCCTTGCAA 60.081 45.833 23.84 0.00 0.00 4.08
3207 3714 3.449018 CCTAGAGCTCTTACTTCCTTGCA 59.551 47.826 23.84 0.00 0.00 4.08
3208 3715 3.181470 CCCTAGAGCTCTTACTTCCTTGC 60.181 52.174 23.84 0.00 0.00 4.01
3209 3716 4.027437 ACCCTAGAGCTCTTACTTCCTTG 58.973 47.826 23.84 3.42 0.00 3.61
3210 3717 4.340328 ACCCTAGAGCTCTTACTTCCTT 57.660 45.455 23.84 0.00 0.00 3.36
3211 3718 4.340328 AACCCTAGAGCTCTTACTTCCT 57.660 45.455 23.84 0.00 0.00 3.36
3212 3719 5.447757 TCTAACCCTAGAGCTCTTACTTCC 58.552 45.833 23.84 0.00 30.34 3.46
3213 3720 8.694581 TTATCTAACCCTAGAGCTCTTACTTC 57.305 38.462 23.84 0.00 37.58 3.01
3214 3721 9.084533 CATTATCTAACCCTAGAGCTCTTACTT 57.915 37.037 23.84 10.72 37.58 2.24
3215 3722 7.177744 GCATTATCTAACCCTAGAGCTCTTACT 59.822 40.741 23.84 0.00 37.58 2.24
3216 3723 7.039644 TGCATTATCTAACCCTAGAGCTCTTAC 60.040 40.741 23.84 0.00 37.58 2.34
3217 3724 7.010771 TGCATTATCTAACCCTAGAGCTCTTA 58.989 38.462 23.84 6.74 37.58 2.10
3218 3725 5.841237 TGCATTATCTAACCCTAGAGCTCTT 59.159 40.000 23.84 5.74 37.58 2.85
3219 3726 5.398236 TGCATTATCTAACCCTAGAGCTCT 58.602 41.667 22.17 22.17 37.58 4.09
3220 3727 5.730296 TGCATTATCTAACCCTAGAGCTC 57.270 43.478 5.27 5.27 37.58 4.09
3221 3728 6.126768 TGTTTGCATTATCTAACCCTAGAGCT 60.127 38.462 0.00 0.00 37.58 4.09
3222 3729 6.017852 GTGTTTGCATTATCTAACCCTAGAGC 60.018 42.308 0.00 0.00 37.58 4.09
3223 3730 7.047891 TGTGTTTGCATTATCTAACCCTAGAG 58.952 38.462 0.00 0.00 37.58 2.43
3224 3731 6.953101 TGTGTTTGCATTATCTAACCCTAGA 58.047 36.000 0.00 0.00 38.54 2.43
3225 3732 7.255242 CCATGTGTTTGCATTATCTAACCCTAG 60.255 40.741 0.00 0.00 0.00 3.02
3226 3733 6.545666 CCATGTGTTTGCATTATCTAACCCTA 59.454 38.462 0.00 0.00 0.00 3.53
3227 3734 5.360714 CCATGTGTTTGCATTATCTAACCCT 59.639 40.000 0.00 0.00 0.00 4.34
3228 3735 5.451798 CCCATGTGTTTGCATTATCTAACCC 60.452 44.000 0.00 0.00 0.00 4.11
3229 3736 5.359576 TCCCATGTGTTTGCATTATCTAACC 59.640 40.000 0.00 0.00 0.00 2.85
3230 3737 6.127758 TGTCCCATGTGTTTGCATTATCTAAC 60.128 38.462 0.00 0.00 0.00 2.34
3231 3738 5.948758 TGTCCCATGTGTTTGCATTATCTAA 59.051 36.000 0.00 0.00 0.00 2.10
3232 3739 5.356751 GTGTCCCATGTGTTTGCATTATCTA 59.643 40.000 0.00 0.00 0.00 1.98
3233 3740 4.158394 GTGTCCCATGTGTTTGCATTATCT 59.842 41.667 0.00 0.00 0.00 1.98
3234 3741 4.423732 GTGTCCCATGTGTTTGCATTATC 58.576 43.478 0.00 0.00 0.00 1.75
3235 3742 3.119531 CGTGTCCCATGTGTTTGCATTAT 60.120 43.478 0.00 0.00 0.00 1.28
3236 3743 2.227626 CGTGTCCCATGTGTTTGCATTA 59.772 45.455 0.00 0.00 0.00 1.90
3237 3744 1.000385 CGTGTCCCATGTGTTTGCATT 60.000 47.619 0.00 0.00 0.00 3.56
3238 3745 0.597568 CGTGTCCCATGTGTTTGCAT 59.402 50.000 0.00 0.00 0.00 3.96
3239 3746 1.451337 CCGTGTCCCATGTGTTTGCA 61.451 55.000 0.00 0.00 0.00 4.08
3240 3747 1.285641 CCGTGTCCCATGTGTTTGC 59.714 57.895 0.00 0.00 0.00 3.68
3241 3748 1.285641 GCCGTGTCCCATGTGTTTG 59.714 57.895 0.00 0.00 0.00 2.93
3242 3749 2.258013 CGCCGTGTCCCATGTGTTT 61.258 57.895 0.00 0.00 0.00 2.83
3243 3750 2.463589 ATCGCCGTGTCCCATGTGTT 62.464 55.000 0.00 0.00 0.00 3.32
3244 3751 1.609635 TATCGCCGTGTCCCATGTGT 61.610 55.000 0.00 0.00 0.00 3.72
3245 3752 0.249868 ATATCGCCGTGTCCCATGTG 60.250 55.000 0.00 0.00 0.00 3.21
3246 3753 0.468226 AATATCGCCGTGTCCCATGT 59.532 50.000 0.00 0.00 0.00 3.21
3247 3754 1.593196 AAATATCGCCGTGTCCCATG 58.407 50.000 0.00 0.00 0.00 3.66
3248 3755 2.341846 AAAATATCGCCGTGTCCCAT 57.658 45.000 0.00 0.00 0.00 4.00
3249 3756 2.011222 GAAAAATATCGCCGTGTCCCA 58.989 47.619 0.00 0.00 0.00 4.37
3250 3757 1.332686 GGAAAAATATCGCCGTGTCCC 59.667 52.381 0.00 0.00 0.00 4.46
3251 3758 2.031683 CAGGAAAAATATCGCCGTGTCC 59.968 50.000 0.00 0.00 0.00 4.02
3252 3759 2.676342 ACAGGAAAAATATCGCCGTGTC 59.324 45.455 0.00 0.00 0.00 3.67
3253 3760 2.418628 CACAGGAAAAATATCGCCGTGT 59.581 45.455 0.00 0.00 0.00 4.49
3254 3761 2.223249 CCACAGGAAAAATATCGCCGTG 60.223 50.000 0.00 0.00 0.00 4.94
3255 3762 2.014128 CCACAGGAAAAATATCGCCGT 58.986 47.619 0.00 0.00 0.00 5.68
3256 3763 2.014128 ACCACAGGAAAAATATCGCCG 58.986 47.619 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.