Multiple sequence alignment - TraesCS3B01G521300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G521300 chr3B 100.000 2430 0 0 1 2430 764684441 764686870 0.000000e+00 4488
1 TraesCS3B01G521300 chr3B 79.039 1145 179 34 1168 2281 826261481 826260367 0.000000e+00 728
2 TraesCS3B01G521300 chr3B 85.366 492 62 8 1175 1661 764053011 764052525 3.610000e-138 501
3 TraesCS3B01G521300 chr3B 85.000 380 51 4 1175 1549 764049349 764048971 4.900000e-102 381
4 TraesCS3B01G521300 chr3B 89.888 178 16 1 1000 1175 813373377 813373200 6.760000e-56 228
5 TraesCS3B01G521300 chr3B 89.759 166 16 1 522 687 764053334 764053170 6.810000e-51 211
6 TraesCS3B01G521300 chr3B 95.556 90 4 0 1169 1258 764685526 764685615 7.000000e-31 145
7 TraesCS3B01G521300 chr3B 95.556 90 4 0 1086 1175 764685609 764685698 7.000000e-31 145
8 TraesCS3B01G521300 chr3D 91.892 1110 74 10 1178 2280 575136423 575135323 0.000000e+00 1537
9 TraesCS3B01G521300 chr3D 87.500 608 61 7 1175 1777 575218949 575219546 0.000000e+00 688
10 TraesCS3B01G521300 chr3D 86.154 455 49 9 1465 1917 575137416 575136974 1.690000e-131 479
11 TraesCS3B01G521300 chr3D 85.132 417 34 12 274 687 575136976 575136585 3.760000e-108 401
12 TraesCS3B01G521300 chr3D 79.434 530 83 17 1176 1698 612763557 612764067 3.840000e-93 351
13 TraesCS3B01G521300 chr3D 92.213 244 19 0 932 1175 575218789 575219032 1.790000e-91 346
14 TraesCS3B01G521300 chr3D 91.429 245 20 1 932 1175 575136586 575136342 3.870000e-88 335
15 TraesCS3B01G521300 chr3D 89.474 247 25 1 293 538 575218426 575218672 6.520000e-81 311
16 TraesCS3B01G521300 chr3D 89.024 246 24 3 932 1175 612763395 612763639 3.930000e-78 302
17 TraesCS3B01G521300 chr3D 88.739 222 25 0 684 905 346865477 346865256 3.080000e-69 272
18 TraesCS3B01G521300 chr3D 75.897 390 85 8 1168 1552 615097887 615097502 8.870000e-45 191
19 TraesCS3B01G521300 chr3D 83.537 164 22 5 953 1114 607899024 607899184 5.410000e-32 148
20 TraesCS3B01G521300 chr3D 80.357 168 26 5 949 1113 605224072 605223909 1.180000e-23 121
21 TraesCS3B01G521300 chr3D 81.208 149 27 1 953 1100 607885677 607885825 4.240000e-23 119
22 TraesCS3B01G521300 chr3A 91.495 1117 83 8 1168 2280 710264274 710265382 0.000000e+00 1526
23 TraesCS3B01G521300 chr3A 84.783 414 33 12 274 687 710263739 710264122 2.930000e-104 388
24 TraesCS3B01G521300 chr3A 91.429 245 20 1 932 1175 710264121 710264365 3.870000e-88 335
25 TraesCS3B01G521300 chr3A 88.406 138 13 1 1466 1603 710263501 710263635 1.930000e-36 163
26 TraesCS3B01G521300 chr3A 82.209 163 26 3 953 1114 740104962 740105122 1.170000e-28 137
27 TraesCS3B01G521300 chr7D 89.333 225 24 0 686 910 553216467 553216691 1.420000e-72 283
28 TraesCS3B01G521300 chr7D 88.889 225 25 0 686 910 41857333 41857109 6.620000e-71 278
29 TraesCS3B01G521300 chr7D 87.597 129 12 3 78 203 236841578 236841451 1.950000e-31 147
30 TraesCS3B01G521300 chrUn 88.889 225 24 1 686 910 83300115 83299892 2.380000e-70 276
31 TraesCS3B01G521300 chr6A 88.889 225 24 1 686 910 107689790 107690013 2.380000e-70 276
32 TraesCS3B01G521300 chr1D 88.158 228 27 0 683 910 178458764 178458991 3.080000e-69 272
33 TraesCS3B01G521300 chr2D 88.444 225 25 1 686 910 604700660 604700883 1.110000e-68 270
34 TraesCS3B01G521300 chr5A 88.053 226 27 0 685 910 631470030 631470255 3.980000e-68 268
35 TraesCS3B01G521300 chr4D 87.719 228 28 0 683 910 122202367 122202140 1.430000e-67 267
36 TraesCS3B01G521300 chr1A 86.603 209 28 0 686 894 361892100 361892308 5.230000e-57 231
37 TraesCS3B01G521300 chr7B 91.339 127 9 2 78 204 561177601 561177725 3.210000e-39 172
38 TraesCS3B01G521300 chr7B 88.806 134 8 4 78 205 23723050 23723182 8.990000e-35 158
39 TraesCS3B01G521300 chr5B 89.147 129 10 3 78 204 138774231 138774357 8.990000e-35 158
40 TraesCS3B01G521300 chr5B 88.372 129 12 2 78 204 540444383 540444256 4.180000e-33 152
41 TraesCS3B01G521300 chr1B 87.879 132 13 3 78 208 584116137 584116008 4.180000e-33 152
42 TraesCS3B01G521300 chr6D 88.372 129 10 4 78 203 394616505 394616631 1.510000e-32 150
43 TraesCS3B01G521300 chr4B 88.095 126 13 2 78 203 105521231 105521108 5.410000e-32 148
44 TraesCS3B01G521300 chr6B 87.302 126 15 1 78 203 690433757 690433881 2.520000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G521300 chr3B 764684441 764686870 2429 False 1592.666667 4488 97.037333 1 2430 3 chr3B.!!$F1 2429
1 TraesCS3B01G521300 chr3B 826260367 826261481 1114 True 728.000000 728 79.039000 1168 2281 1 chr3B.!!$R2 1113
2 TraesCS3B01G521300 chr3B 764048971 764053334 4363 True 364.333333 501 86.708333 522 1661 3 chr3B.!!$R3 1139
3 TraesCS3B01G521300 chr3D 575135323 575137416 2093 True 688.000000 1537 88.651750 274 2280 4 chr3D.!!$R4 2006
4 TraesCS3B01G521300 chr3D 575218426 575219546 1120 False 448.333333 688 89.729000 293 1777 3 chr3D.!!$F3 1484
5 TraesCS3B01G521300 chr3D 612763395 612764067 672 False 326.500000 351 84.229000 932 1698 2 chr3D.!!$F4 766
6 TraesCS3B01G521300 chr3A 710263501 710265382 1881 False 603.000000 1526 89.028250 274 2280 4 chr3A.!!$F2 2006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 883 0.179145 CTCCGTCCGCGAATTAGTGT 60.179 55.0 8.23 0.0 41.33 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 2444 0.032952 GTGTTGGTGCGGTGAGTAGA 59.967 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.396260 TTTTTGCACGCTACCTCTAGT 57.604 42.857 0.00 0.00 0.00 2.57
43 44 3.396260 TTTTGCACGCTACCTCTAGTT 57.604 42.857 0.00 0.00 0.00 2.24
45 46 3.396260 TTGCACGCTACCTCTAGTTTT 57.604 42.857 0.00 0.00 0.00 2.43
79 80 9.614792 GTATAATAAGCCTGTAAGATAATGGGG 57.385 37.037 0.00 0.00 34.07 4.96
80 81 3.884037 AAGCCTGTAAGATAATGGGGG 57.116 47.619 0.00 0.00 34.07 5.40
81 82 3.074857 AGCCTGTAAGATAATGGGGGA 57.925 47.619 0.00 0.00 34.07 4.81
82 83 3.613559 AGCCTGTAAGATAATGGGGGAT 58.386 45.455 0.00 0.00 34.07 3.85
85 86 4.524328 GCCTGTAAGATAATGGGGGATTTG 59.476 45.833 0.00 0.00 34.07 2.32
86 87 5.692781 GCCTGTAAGATAATGGGGGATTTGA 60.693 44.000 0.00 0.00 34.07 2.69
87 88 6.555711 CCTGTAAGATAATGGGGGATTTGAT 58.444 40.000 0.00 0.00 34.07 2.57
88 89 6.435277 CCTGTAAGATAATGGGGGATTTGATG 59.565 42.308 0.00 0.00 34.07 3.07
89 90 7.160457 TGTAAGATAATGGGGGATTTGATGA 57.840 36.000 0.00 0.00 0.00 2.92
91 92 8.233820 TGTAAGATAATGGGGGATTTGATGATT 58.766 33.333 0.00 0.00 0.00 2.57
92 93 9.093458 GTAAGATAATGGGGGATTTGATGATTT 57.907 33.333 0.00 0.00 0.00 2.17
93 94 7.549147 AGATAATGGGGGATTTGATGATTTG 57.451 36.000 0.00 0.00 0.00 2.32
94 95 7.077745 AGATAATGGGGGATTTGATGATTTGT 58.922 34.615 0.00 0.00 0.00 2.83
95 96 5.619132 AATGGGGGATTTGATGATTTGTC 57.381 39.130 0.00 0.00 0.00 3.18
96 97 3.373830 TGGGGGATTTGATGATTTGTCC 58.626 45.455 0.00 0.00 0.00 4.02
99 100 5.103129 TGGGGGATTTGATGATTTGTCCTAT 60.103 40.000 0.00 0.00 0.00 2.57
100 101 5.244626 GGGGGATTTGATGATTTGTCCTATG 59.755 44.000 0.00 0.00 0.00 2.23
101 102 6.070656 GGGGATTTGATGATTTGTCCTATGA 58.929 40.000 0.00 0.00 0.00 2.15
104 105 8.086522 GGGATTTGATGATTTGTCCTATGATTG 58.913 37.037 0.00 0.00 0.00 2.67
105 106 8.636213 GGATTTGATGATTTGTCCTATGATTGT 58.364 33.333 0.00 0.00 0.00 2.71
106 107 9.674824 GATTTGATGATTTGTCCTATGATTGTC 57.325 33.333 0.00 0.00 0.00 3.18
107 108 8.812513 TTTGATGATTTGTCCTATGATTGTCT 57.187 30.769 0.00 0.00 0.00 3.41
108 109 8.442632 TTGATGATTTGTCCTATGATTGTCTC 57.557 34.615 0.00 0.00 0.00 3.36
109 110 7.567458 TGATGATTTGTCCTATGATTGTCTCA 58.433 34.615 0.00 0.00 38.53 3.27
111 112 8.991783 ATGATTTGTCCTATGATTGTCTCAAT 57.008 30.769 0.00 0.00 37.44 2.57
112 113 8.217131 TGATTTGTCCTATGATTGTCTCAATG 57.783 34.615 0.00 0.00 37.44 2.82
113 114 8.048514 TGATTTGTCCTATGATTGTCTCAATGA 58.951 33.333 0.00 0.00 37.44 2.57
114 115 7.615582 TTTGTCCTATGATTGTCTCAATGAC 57.384 36.000 0.00 2.40 45.54 3.06
122 123 2.859992 GTCTCAATGACAGTGGCCC 58.140 57.895 0.00 0.00 44.73 5.80
123 124 0.678048 GTCTCAATGACAGTGGCCCC 60.678 60.000 0.00 0.00 44.73 5.80
124 125 1.746615 CTCAATGACAGTGGCCCCG 60.747 63.158 0.00 0.00 0.00 5.73
125 126 2.751436 CAATGACAGTGGCCCCGG 60.751 66.667 0.00 0.00 0.00 5.73
126 127 4.047125 AATGACAGTGGCCCCGGG 62.047 66.667 15.80 15.80 0.00 5.73
178 179 4.540715 GGGGGATGATCAAATGAAGAAGT 58.459 43.478 0.00 0.00 0.00 3.01
179 180 5.694995 GGGGGATGATCAAATGAAGAAGTA 58.305 41.667 0.00 0.00 0.00 2.24
180 181 6.129179 GGGGGATGATCAAATGAAGAAGTAA 58.871 40.000 0.00 0.00 0.00 2.24
181 182 6.607198 GGGGGATGATCAAATGAAGAAGTAAA 59.393 38.462 0.00 0.00 0.00 2.01
182 183 7.201857 GGGGGATGATCAAATGAAGAAGTAAAG 60.202 40.741 0.00 0.00 0.00 1.85
183 184 7.340487 GGGGATGATCAAATGAAGAAGTAAAGT 59.660 37.037 0.00 0.00 0.00 2.66
186 187 9.552114 GATGATCAAATGAAGAAGTAAAGTGTG 57.448 33.333 0.00 0.00 0.00 3.82
187 188 7.874940 TGATCAAATGAAGAAGTAAAGTGTGG 58.125 34.615 0.00 0.00 0.00 4.17
188 189 6.072112 TCAAATGAAGAAGTAAAGTGTGGC 57.928 37.500 0.00 0.00 0.00 5.01
189 190 5.592282 TCAAATGAAGAAGTAAAGTGTGGCA 59.408 36.000 0.00 0.00 0.00 4.92
191 192 6.463995 AATGAAGAAGTAAAGTGTGGCAAA 57.536 33.333 0.00 0.00 0.00 3.68
192 193 5.906113 TGAAGAAGTAAAGTGTGGCAAAA 57.094 34.783 0.00 0.00 0.00 2.44
193 194 5.890334 TGAAGAAGTAAAGTGTGGCAAAAG 58.110 37.500 0.00 0.00 0.00 2.27
195 196 6.321181 TGAAGAAGTAAAGTGTGGCAAAAGAT 59.679 34.615 0.00 0.00 0.00 2.40
196 197 6.319141 AGAAGTAAAGTGTGGCAAAAGATC 57.681 37.500 0.00 0.00 0.00 2.75
197 198 5.827797 AGAAGTAAAGTGTGGCAAAAGATCA 59.172 36.000 0.00 0.00 0.00 2.92
198 199 6.321181 AGAAGTAAAGTGTGGCAAAAGATCAA 59.679 34.615 0.00 0.00 0.00 2.57
199 200 6.463995 AGTAAAGTGTGGCAAAAGATCAAA 57.536 33.333 0.00 0.00 0.00 2.69
200 201 7.054491 AGTAAAGTGTGGCAAAAGATCAAAT 57.946 32.000 0.00 0.00 0.00 2.32
201 202 7.500141 AGTAAAGTGTGGCAAAAGATCAAATT 58.500 30.769 0.00 0.00 0.00 1.82
202 203 7.986889 AGTAAAGTGTGGCAAAAGATCAAATTT 59.013 29.630 0.00 0.00 0.00 1.82
204 205 7.628769 AAGTGTGGCAAAAGATCAAATTTTT 57.371 28.000 0.00 0.00 0.00 1.94
226 227 6.411630 TTTGTAAGATACCAACGTGTATGC 57.588 37.500 3.47 0.00 31.67 3.14
227 228 5.333299 TGTAAGATACCAACGTGTATGCT 57.667 39.130 3.47 0.00 31.67 3.79
229 230 6.865411 TGTAAGATACCAACGTGTATGCTTA 58.135 36.000 3.47 7.94 31.67 3.09
230 231 7.494211 TGTAAGATACCAACGTGTATGCTTAT 58.506 34.615 3.47 0.00 31.67 1.73
231 232 6.844696 AAGATACCAACGTGTATGCTTATG 57.155 37.500 3.47 0.00 31.67 1.90
232 233 5.297547 AGATACCAACGTGTATGCTTATGG 58.702 41.667 3.47 0.00 31.67 2.74
233 234 3.620427 ACCAACGTGTATGCTTATGGA 57.380 42.857 4.23 0.00 0.00 3.41
234 235 3.945346 ACCAACGTGTATGCTTATGGAA 58.055 40.909 4.23 0.00 0.00 3.53
235 236 3.938963 ACCAACGTGTATGCTTATGGAAG 59.061 43.478 4.23 0.00 35.60 3.46
249 250 3.575965 ATGGAAGCCTAAACAAAAGCG 57.424 42.857 0.00 0.00 0.00 4.68
250 251 2.577700 TGGAAGCCTAAACAAAAGCGA 58.422 42.857 0.00 0.00 0.00 4.93
251 252 2.552315 TGGAAGCCTAAACAAAAGCGAG 59.448 45.455 0.00 0.00 0.00 5.03
253 254 3.440522 GGAAGCCTAAACAAAAGCGAGAT 59.559 43.478 0.00 0.00 0.00 2.75
255 256 5.123344 GGAAGCCTAAACAAAAGCGAGATTA 59.877 40.000 0.00 0.00 0.00 1.75
256 257 5.803020 AGCCTAAACAAAAGCGAGATTAG 57.197 39.130 0.00 0.00 0.00 1.73
257 258 4.636206 AGCCTAAACAAAAGCGAGATTAGG 59.364 41.667 5.27 5.27 41.37 2.69
258 259 4.634443 GCCTAAACAAAAGCGAGATTAGGA 59.366 41.667 12.31 0.00 41.08 2.94
259 260 5.123344 GCCTAAACAAAAGCGAGATTAGGAA 59.877 40.000 12.31 0.00 41.08 3.36
261 262 7.628580 GCCTAAACAAAAGCGAGATTAGGAATT 60.629 37.037 12.31 0.00 41.08 2.17
263 264 7.454260 AAACAAAAGCGAGATTAGGAATTCT 57.546 32.000 5.23 0.00 0.00 2.40
264 265 6.428385 ACAAAAGCGAGATTAGGAATTCTG 57.572 37.500 5.23 0.00 0.00 3.02
265 266 6.173339 ACAAAAGCGAGATTAGGAATTCTGA 58.827 36.000 5.23 0.00 0.00 3.27
267 268 7.337942 ACAAAAGCGAGATTAGGAATTCTGAAT 59.662 33.333 5.23 5.34 0.00 2.57
270 271 5.757320 AGCGAGATTAGGAATTCTGAATGTG 59.243 40.000 3.22 1.87 0.00 3.21
271 272 5.755375 GCGAGATTAGGAATTCTGAATGTGA 59.245 40.000 3.22 0.00 0.00 3.58
272 273 6.292596 GCGAGATTAGGAATTCTGAATGTGAC 60.293 42.308 3.22 0.00 0.00 3.67
274 275 7.205515 AGATTAGGAATTCTGAATGTGACCT 57.794 36.000 3.22 12.14 0.00 3.85
275 276 7.637511 AGATTAGGAATTCTGAATGTGACCTT 58.362 34.615 17.21 6.88 0.00 3.50
277 278 9.566432 GATTAGGAATTCTGAATGTGACCTTAT 57.434 33.333 17.21 14.84 0.00 1.73
317 486 6.537355 TCTTCTTTGCCATCCTGAATATAGG 58.463 40.000 0.00 0.00 39.29 2.57
445 615 5.678583 AGGACAATAATGTGGTCAGATCTG 58.321 41.667 17.07 17.07 40.74 2.90
450 620 8.498054 ACAATAATGTGGTCAGATCTGTTTAG 57.502 34.615 21.92 0.00 38.69 1.85
452 622 8.950210 CAATAATGTGGTCAGATCTGTTTAGTT 58.050 33.333 21.92 13.00 0.00 2.24
675 848 7.996644 AGTGAACCAGGACTAAATGTTCTTTAA 59.003 33.333 0.00 0.00 36.98 1.52
691 864 9.668497 ATGTTCTTTAACTACAAATCTACTCCC 57.332 33.333 0.00 0.00 36.51 4.30
692 865 8.877195 TGTTCTTTAACTACAAATCTACTCCCT 58.123 33.333 0.00 0.00 36.51 4.20
693 866 9.368674 GTTCTTTAACTACAAATCTACTCCCTC 57.631 37.037 0.00 0.00 32.54 4.30
694 867 8.075761 TCTTTAACTACAAATCTACTCCCTCC 57.924 38.462 0.00 0.00 0.00 4.30
695 868 6.461110 TTAACTACAAATCTACTCCCTCCG 57.539 41.667 0.00 0.00 0.00 4.63
696 869 3.978610 ACTACAAATCTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
697 870 3.952967 ACTACAAATCTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
698 871 2.108970 ACAAATCTACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
699 872 1.067212 CAAATCTACTCCCTCCGTCCG 59.933 57.143 0.00 0.00 0.00 4.79
700 873 1.108132 AATCTACTCCCTCCGTCCGC 61.108 60.000 0.00 0.00 0.00 5.54
701 874 3.584052 CTACTCCCTCCGTCCGCG 61.584 72.222 0.00 0.00 37.95 6.46
702 875 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
703 876 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
704 877 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
705 878 3.072468 TCCCTCCGTCCGCGAATT 61.072 61.111 8.23 0.00 41.33 2.17
706 879 1.731433 CTCCCTCCGTCCGCGAATTA 61.731 60.000 8.23 0.00 41.33 1.40
707 880 1.299926 CCCTCCGTCCGCGAATTAG 60.300 63.158 8.23 0.00 41.33 1.73
708 881 1.436336 CCTCCGTCCGCGAATTAGT 59.564 57.895 8.23 0.00 41.33 2.24
709 882 0.870307 CCTCCGTCCGCGAATTAGTG 60.870 60.000 8.23 0.00 41.33 2.74
710 883 0.179145 CTCCGTCCGCGAATTAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
711 884 1.064505 CTCCGTCCGCGAATTAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
712 885 1.194495 CCGTCCGCGAATTAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
713 886 1.467883 CCGTCCGCGAATTAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
714 887 2.456989 CGTCCGCGAATTAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
715 888 2.466571 CGTCCGCGAATTAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
716 889 3.703420 GTCCGCGAATTAGTGTACATCT 58.297 45.455 8.23 0.87 0.00 2.90
717 890 4.553351 CGTCCGCGAATTAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
718 891 4.910456 GTCCGCGAATTAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
719 892 4.818005 TCCGCGAATTAGTGTACATCTAGA 59.182 41.667 8.23 0.00 0.00 2.43
720 893 5.472478 TCCGCGAATTAGTGTACATCTAGAT 59.528 40.000 8.23 0.00 0.00 1.98
721 894 6.016527 TCCGCGAATTAGTGTACATCTAGATT 60.017 38.462 8.23 5.94 0.00 2.40
722 895 6.641314 CCGCGAATTAGTGTACATCTAGATTT 59.359 38.462 8.23 0.00 0.00 2.17
723 896 7.169308 CCGCGAATTAGTGTACATCTAGATTTT 59.831 37.037 8.23 0.00 0.00 1.82
724 897 7.998767 CGCGAATTAGTGTACATCTAGATTTTG 59.001 37.037 0.00 0.00 0.00 2.44
725 898 8.818057 GCGAATTAGTGTACATCTAGATTTTGT 58.182 33.333 1.33 2.40 0.00 2.83
732 905 9.036980 AGTGTACATCTAGATTTTGTCCTAAGT 57.963 33.333 1.33 0.00 0.00 2.24
733 906 9.303537 GTGTACATCTAGATTTTGTCCTAAGTC 57.696 37.037 1.33 0.00 0.00 3.01
734 907 9.031537 TGTACATCTAGATTTTGTCCTAAGTCA 57.968 33.333 1.33 0.00 0.00 3.41
735 908 9.871238 GTACATCTAGATTTTGTCCTAAGTCAA 57.129 33.333 1.33 0.00 0.00 3.18
737 910 9.793259 ACATCTAGATTTTGTCCTAAGTCAAAA 57.207 29.630 1.33 5.72 42.45 2.44
775 948 9.332502 TGACTAACTTTATTGTGAAAAGTAGCA 57.667 29.630 1.96 0.00 44.35 3.49
777 950 9.946165 ACTAACTTTATTGTGAAAAGTAGCAAC 57.054 29.630 1.96 0.00 44.35 4.17
778 951 9.944663 CTAACTTTATTGTGAAAAGTAGCAACA 57.055 29.630 1.96 0.00 44.35 3.33
780 953 9.816354 AACTTTATTGTGAAAAGTAGCAACATT 57.184 25.926 1.96 0.00 44.35 2.71
781 954 9.816354 ACTTTATTGTGAAAAGTAGCAACATTT 57.184 25.926 0.00 0.00 43.54 2.32
788 961 9.672086 TGTGAAAAGTAGCAACATTTATAACAC 57.328 29.630 0.00 0.00 0.00 3.32
789 962 9.893305 GTGAAAAGTAGCAACATTTATAACACT 57.107 29.630 0.00 0.00 0.00 3.55
828 1001 9.959749 GTAGATTTGTTTTGAAATGTACTTCCA 57.040 29.630 0.00 0.00 38.29 3.53
918 1091 9.946165 AAGTTTTGACTTAGTACACTTATTTGC 57.054 29.630 0.00 0.00 0.00 3.68
919 1092 8.280497 AGTTTTGACTTAGTACACTTATTTGCG 58.720 33.333 0.00 0.00 0.00 4.85
920 1093 6.715344 TTGACTTAGTACACTTATTTGCGG 57.285 37.500 0.00 0.00 0.00 5.69
921 1094 6.028146 TGACTTAGTACACTTATTTGCGGA 57.972 37.500 0.00 0.00 0.00 5.54
922 1095 5.865552 TGACTTAGTACACTTATTTGCGGAC 59.134 40.000 0.00 0.00 0.00 4.79
923 1096 5.786311 ACTTAGTACACTTATTTGCGGACA 58.214 37.500 0.00 0.00 0.00 4.02
924 1097 5.867716 ACTTAGTACACTTATTTGCGGACAG 59.132 40.000 0.00 0.00 0.00 3.51
925 1098 4.530710 AGTACACTTATTTGCGGACAGA 57.469 40.909 0.00 0.00 0.00 3.41
926 1099 4.495422 AGTACACTTATTTGCGGACAGAG 58.505 43.478 0.00 0.00 0.00 3.35
927 1100 2.699954 ACACTTATTTGCGGACAGAGG 58.300 47.619 0.00 0.00 0.00 3.69
928 1101 2.009774 CACTTATTTGCGGACAGAGGG 58.990 52.381 0.00 0.00 0.00 4.30
929 1102 1.906574 ACTTATTTGCGGACAGAGGGA 59.093 47.619 0.00 0.00 0.00 4.20
930 1103 2.093447 ACTTATTTGCGGACAGAGGGAG 60.093 50.000 0.00 0.00 0.00 4.30
940 1113 4.396790 GCGGACAGAGGGAGTATAAGATAG 59.603 50.000 0.00 0.00 0.00 2.08
946 1119 6.663093 ACAGAGGGAGTATAAGATAGCATCAG 59.337 42.308 0.00 0.00 0.00 2.90
991 1166 3.821421 ACGAGAACCAGAAGTTTGAGT 57.179 42.857 0.00 0.00 39.40 3.41
992 1167 3.458189 ACGAGAACCAGAAGTTTGAGTG 58.542 45.455 0.00 0.00 39.40 3.51
1127 1304 4.594920 CCTATCCCTCCAAGCAGAATAGAA 59.405 45.833 0.00 0.00 0.00 2.10
1128 1305 3.914426 TCCCTCCAAGCAGAATAGAAC 57.086 47.619 0.00 0.00 0.00 3.01
1129 1306 3.454858 TCCCTCCAAGCAGAATAGAACT 58.545 45.455 0.00 0.00 0.00 3.01
1130 1307 4.620723 TCCCTCCAAGCAGAATAGAACTA 58.379 43.478 0.00 0.00 0.00 2.24
1131 1308 4.406003 TCCCTCCAAGCAGAATAGAACTAC 59.594 45.833 0.00 0.00 0.00 2.73
1132 1309 4.162320 CCCTCCAAGCAGAATAGAACTACA 59.838 45.833 0.00 0.00 0.00 2.74
1133 1310 5.112686 CCTCCAAGCAGAATAGAACTACAC 58.887 45.833 0.00 0.00 0.00 2.90
1134 1311 5.337571 CCTCCAAGCAGAATAGAACTACACA 60.338 44.000 0.00 0.00 0.00 3.72
1135 1312 6.109156 TCCAAGCAGAATAGAACTACACAA 57.891 37.500 0.00 0.00 0.00 3.33
1136 1313 6.166279 TCCAAGCAGAATAGAACTACACAAG 58.834 40.000 0.00 0.00 0.00 3.16
1137 1314 5.934625 CCAAGCAGAATAGAACTACACAAGT 59.065 40.000 0.00 0.00 41.49 3.16
1156 1333 9.220767 ACACAAGTTTCTTAGTATGGATTTCTC 57.779 33.333 0.00 0.00 0.00 2.87
1157 1334 9.442047 CACAAGTTTCTTAGTATGGATTTCTCT 57.558 33.333 0.00 0.00 0.00 3.10
1173 1350 8.762645 TGGATTTCTCTTACTGATGTATGTTCT 58.237 33.333 0.00 0.00 0.00 3.01
1201 1378 0.978146 TGTCTCCTAGCCCTCCAAGC 60.978 60.000 0.00 0.00 0.00 4.01
1202 1379 0.978146 GTCTCCTAGCCCTCCAAGCA 60.978 60.000 0.00 0.00 0.00 3.91
1205 1382 0.252696 TCCTAGCCCTCCAAGCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
1206 1383 0.842635 CCTAGCCCTCCAAGCAGAAT 59.157 55.000 0.00 0.00 0.00 2.40
1207 1384 2.050144 CCTAGCCCTCCAAGCAGAATA 58.950 52.381 0.00 0.00 0.00 1.75
1208 1385 2.038295 CCTAGCCCTCCAAGCAGAATAG 59.962 54.545 0.00 0.00 0.00 1.73
1213 1390 3.134804 GCCCTCCAAGCAGAATAGAACTA 59.865 47.826 0.00 0.00 0.00 2.24
1304 1481 2.345641 CGTGCTTACTCAAGTCCATTCG 59.654 50.000 0.00 0.00 34.00 3.34
1372 1552 5.163571 GGGAAAGCTCTTCAATCATTCTTCC 60.164 44.000 9.75 4.30 0.00 3.46
1390 1570 5.721232 TCTTCCTGTAAAGTTCGAGGATTC 58.279 41.667 0.00 0.00 34.53 2.52
1457 1637 4.517285 TCTAGTTGGACTTTGCCATCATC 58.483 43.478 0.00 0.00 37.86 2.92
1581 1761 7.527568 TGATAATTGATGCTTGCATGGAATA 57.472 32.000 13.18 2.24 0.00 1.75
1627 1809 3.370978 CGAACGAACCAAGTCTATTGCAT 59.629 43.478 0.00 0.00 0.00 3.96
1712 1897 9.965824 CCTAGTTTTTAATTCTCTTCAGCAAAA 57.034 29.630 0.00 0.00 0.00 2.44
1763 2444 0.183492 TTGGCTCACAGGACAAGCTT 59.817 50.000 0.00 0.00 36.29 3.74
1783 2464 0.249699 CTACTCACCGCACCAACACA 60.250 55.000 0.00 0.00 0.00 3.72
1784 2465 0.531090 TACTCACCGCACCAACACAC 60.531 55.000 0.00 0.00 0.00 3.82
1785 2466 2.881266 CTCACCGCACCAACACACG 61.881 63.158 0.00 0.00 0.00 4.49
1828 2521 1.381056 GCCCACCACCATTGCCATA 60.381 57.895 0.00 0.00 0.00 2.74
1869 2569 0.596577 TACTCGCTGCCATCGGTATC 59.403 55.000 0.00 0.00 0.00 2.24
1875 2575 1.217585 CTGCCATCGGTATCACGCAG 61.218 60.000 0.00 0.00 37.93 5.18
1898 2598 1.079127 CTGTAACCAGGACCAGCCG 60.079 63.158 0.00 0.00 43.43 5.52
1907 2607 1.003839 GGACCAGCCGTCAATGTCA 60.004 57.895 4.12 0.00 43.95 3.58
1993 2695 5.353678 CCATCTCTGAAGTCTGAACATTTCC 59.646 44.000 0.00 0.00 0.00 3.13
2043 3319 4.652822 ACCTTCAAGTGTAAGGGACAATC 58.347 43.478 6.80 0.00 46.56 2.67
2087 3621 7.916914 AATATAAATATTTAGCGCGAACCCT 57.083 32.000 12.10 0.00 28.99 4.34
2090 3624 2.389962 TATTTAGCGCGAACCCTGTT 57.610 45.000 12.10 0.00 0.00 3.16
2123 3657 6.374417 AGATAGGCTTCTTGTTACCTCAAA 57.626 37.500 0.00 0.00 33.60 2.69
2162 3696 9.891828 CTTACAGAACATTTTATGCACTTGTAA 57.108 29.630 0.00 0.00 0.00 2.41
2190 3724 2.618053 CAGTAAAGGTAAGCGGTGAGG 58.382 52.381 0.00 0.00 0.00 3.86
2227 3761 6.059484 TCCACTAAGTTTGGGAGTACAAAAG 58.941 40.000 0.00 0.00 41.53 2.27
2281 3907 2.538449 ACACTAAGTTTGTGAGCGTTCG 59.462 45.455 21.76 0.00 38.65 3.95
2282 3908 2.096909 CACTAAGTTTGTGAGCGTTCGG 60.097 50.000 11.45 0.00 37.60 4.30
2283 3909 2.132762 CTAAGTTTGTGAGCGTTCGGT 58.867 47.619 0.00 0.00 0.00 4.69
2284 3910 0.655733 AAGTTTGTGAGCGTTCGGTG 59.344 50.000 0.77 0.00 0.00 4.94
2286 3912 1.815840 TTTGTGAGCGTTCGGTGCA 60.816 52.632 0.77 0.00 33.85 4.57
2288 3914 1.771073 TTGTGAGCGTTCGGTGCAAG 61.771 55.000 0.77 0.00 33.85 4.01
2289 3915 2.108157 TGAGCGTTCGGTGCAAGT 59.892 55.556 0.77 0.00 33.85 3.16
2290 3916 0.942410 GTGAGCGTTCGGTGCAAGTA 60.942 55.000 0.77 0.00 33.85 2.24
2291 3917 0.249531 TGAGCGTTCGGTGCAAGTAA 60.250 50.000 0.77 0.00 33.85 2.24
2292 3918 0.163146 GAGCGTTCGGTGCAAGTAAC 59.837 55.000 0.77 0.00 33.85 2.50
2293 3919 0.531090 AGCGTTCGGTGCAAGTAACA 60.531 50.000 0.00 0.00 33.85 2.41
2294 3920 0.383860 GCGTTCGGTGCAAGTAACAC 60.384 55.000 0.00 0.00 37.31 3.32
2301 3927 1.519408 GTGCAAGTAACACCATCCGT 58.481 50.000 0.00 0.00 31.67 4.69
2302 3928 2.690786 GTGCAAGTAACACCATCCGTA 58.309 47.619 0.00 0.00 31.67 4.02
2303 3929 2.671396 GTGCAAGTAACACCATCCGTAG 59.329 50.000 0.00 0.00 31.67 3.51
2304 3930 2.563620 TGCAAGTAACACCATCCGTAGA 59.436 45.455 0.00 0.00 0.00 2.59
2305 3931 3.187700 GCAAGTAACACCATCCGTAGAG 58.812 50.000 0.00 0.00 0.00 2.43
2306 3932 3.187700 CAAGTAACACCATCCGTAGAGC 58.812 50.000 0.00 0.00 0.00 4.09
2307 3933 2.736347 AGTAACACCATCCGTAGAGCT 58.264 47.619 0.00 0.00 0.00 4.09
2308 3934 2.427453 AGTAACACCATCCGTAGAGCTG 59.573 50.000 0.00 0.00 0.00 4.24
2310 3936 1.257750 ACACCATCCGTAGAGCTGCA 61.258 55.000 1.02 0.00 0.00 4.41
2311 3937 0.108186 CACCATCCGTAGAGCTGCAA 60.108 55.000 1.02 0.00 0.00 4.08
2312 3938 0.176680 ACCATCCGTAGAGCTGCAAG 59.823 55.000 1.02 0.00 0.00 4.01
2324 3950 1.364901 CTGCAAGCAACACCCTTGG 59.635 57.895 0.00 0.00 39.95 3.61
2325 3951 1.076412 TGCAAGCAACACCCTTGGA 60.076 52.632 0.00 0.00 39.95 3.53
2326 3952 1.108727 TGCAAGCAACACCCTTGGAG 61.109 55.000 0.00 0.00 39.95 3.86
2327 3953 1.109323 GCAAGCAACACCCTTGGAGT 61.109 55.000 3.66 0.00 39.95 3.85
2328 3954 1.817740 GCAAGCAACACCCTTGGAGTA 60.818 52.381 3.66 0.00 39.95 2.59
2330 3956 0.036875 AGCAACACCCTTGGAGTAGC 59.963 55.000 0.00 0.00 0.00 3.58
2331 3957 0.036875 GCAACACCCTTGGAGTAGCT 59.963 55.000 0.00 0.00 0.00 3.32
2332 3958 1.278127 GCAACACCCTTGGAGTAGCTA 59.722 52.381 0.00 0.00 0.00 3.32
2333 3959 2.678190 GCAACACCCTTGGAGTAGCTAG 60.678 54.545 0.00 0.00 0.00 3.42
2334 3960 1.867363 ACACCCTTGGAGTAGCTAGG 58.133 55.000 0.00 0.00 0.00 3.02
2335 3961 1.361543 ACACCCTTGGAGTAGCTAGGA 59.638 52.381 0.00 0.00 0.00 2.94
2336 3962 2.035632 CACCCTTGGAGTAGCTAGGAG 58.964 57.143 0.00 0.00 0.00 3.69
2337 3963 1.044611 CCCTTGGAGTAGCTAGGAGC 58.955 60.000 0.00 0.00 42.84 4.70
2338 3964 1.044611 CCTTGGAGTAGCTAGGAGCC 58.955 60.000 0.00 0.00 43.77 4.70
2339 3965 1.689575 CCTTGGAGTAGCTAGGAGCCA 60.690 57.143 0.00 0.00 43.77 4.75
2343 3969 0.747852 GAGTAGCTAGGAGCCACCAC 59.252 60.000 0.00 0.00 43.77 4.16
2344 3970 0.041238 AGTAGCTAGGAGCCACCACA 59.959 55.000 0.00 0.00 43.77 4.17
2345 3971 1.123928 GTAGCTAGGAGCCACCACAT 58.876 55.000 0.00 0.00 43.77 3.21
2346 3972 1.069358 GTAGCTAGGAGCCACCACATC 59.931 57.143 0.00 0.00 43.77 3.06
2347 3973 1.227380 GCTAGGAGCCACCACATCG 60.227 63.158 0.00 0.00 42.04 3.84
2348 3974 1.961180 GCTAGGAGCCACCACATCGT 61.961 60.000 0.00 0.00 42.04 3.73
2349 3975 0.179100 CTAGGAGCCACCACATCGTG 60.179 60.000 0.47 0.00 42.04 4.35
2350 3976 0.902984 TAGGAGCCACCACATCGTGT 60.903 55.000 0.47 0.00 42.04 4.49
2351 3977 0.902984 AGGAGCCACCACATCGTGTA 60.903 55.000 0.47 0.00 42.04 2.90
2352 3978 0.739813 GGAGCCACCACATCGTGTAC 60.740 60.000 0.00 0.00 38.79 2.90
2353 3979 0.246635 GAGCCACCACATCGTGTACT 59.753 55.000 0.00 0.00 31.47 2.73
2355 3981 0.739813 GCCACCACATCGTGTACTCC 60.740 60.000 0.00 0.00 31.47 3.85
2356 3982 0.606096 CCACCACATCGTGTACTCCA 59.394 55.000 0.00 0.00 31.47 3.86
2357 3983 1.001520 CCACCACATCGTGTACTCCAA 59.998 52.381 0.00 0.00 31.47 3.53
2359 3985 2.672874 CACCACATCGTGTACTCCAATG 59.327 50.000 0.00 0.00 0.00 2.82
2360 3986 2.279741 CCACATCGTGTACTCCAATGG 58.720 52.381 0.00 0.00 0.00 3.16
2362 3988 3.334691 CACATCGTGTACTCCAATGGTT 58.665 45.455 0.00 0.00 0.00 3.67
2363 3989 3.751175 CACATCGTGTACTCCAATGGTTT 59.249 43.478 0.00 0.00 0.00 3.27
2364 3990 4.000988 ACATCGTGTACTCCAATGGTTTC 58.999 43.478 0.00 0.00 0.00 2.78
2365 3991 3.048337 TCGTGTACTCCAATGGTTTCC 57.952 47.619 0.00 0.00 0.00 3.13
2367 3993 2.443416 GTGTACTCCAATGGTTTCCCC 58.557 52.381 0.00 0.00 0.00 4.81
2368 3994 2.041216 GTGTACTCCAATGGTTTCCCCT 59.959 50.000 0.00 0.00 0.00 4.79
2369 3995 3.264964 GTGTACTCCAATGGTTTCCCCTA 59.735 47.826 0.00 0.00 0.00 3.53
2370 3996 3.917629 TGTACTCCAATGGTTTCCCCTAA 59.082 43.478 0.00 0.00 0.00 2.69
2371 3997 4.354387 TGTACTCCAATGGTTTCCCCTAAA 59.646 41.667 0.00 0.00 0.00 1.85
2372 3998 4.479156 ACTCCAATGGTTTCCCCTAAAA 57.521 40.909 0.00 0.00 0.00 1.52
2373 3999 4.821940 ACTCCAATGGTTTCCCCTAAAAA 58.178 39.130 0.00 0.00 0.00 1.94
2375 4001 4.821940 TCCAATGGTTTCCCCTAAAAAGT 58.178 39.130 0.00 0.00 0.00 2.66
2377 4003 6.382925 TCCAATGGTTTCCCCTAAAAAGTAA 58.617 36.000 0.00 0.00 0.00 2.24
2378 4004 6.268158 TCCAATGGTTTCCCCTAAAAAGTAAC 59.732 38.462 0.00 0.00 0.00 2.50
2379 4005 6.042208 CCAATGGTTTCCCCTAAAAAGTAACA 59.958 38.462 0.00 0.00 0.00 2.41
2383 4009 5.363292 GGTTTCCCCTAAAAAGTAACACCAA 59.637 40.000 0.00 0.00 0.00 3.67
2384 4010 6.127111 GGTTTCCCCTAAAAAGTAACACCAAA 60.127 38.462 0.00 0.00 0.00 3.28
2385 4011 7.419287 GGTTTCCCCTAAAAAGTAACACCAAAT 60.419 37.037 0.00 0.00 0.00 2.32
2387 4013 5.474189 TCCCCTAAAAAGTAACACCAAATCG 59.526 40.000 0.00 0.00 0.00 3.34
2388 4014 5.242171 CCCCTAAAAAGTAACACCAAATCGT 59.758 40.000 0.00 0.00 0.00 3.73
2390 4016 7.204604 CCCTAAAAAGTAACACCAAATCGTTT 58.795 34.615 0.00 0.00 0.00 3.60
2391 4017 7.707464 CCCTAAAAAGTAACACCAAATCGTTTT 59.293 33.333 0.00 0.00 0.00 2.43
2392 4018 9.733219 CCTAAAAAGTAACACCAAATCGTTTTA 57.267 29.630 0.00 0.00 0.00 1.52
2396 4022 6.930667 AGTAACACCAAATCGTTTTACTGT 57.069 33.333 0.77 0.00 37.67 3.55
2397 4023 7.324354 AGTAACACCAAATCGTTTTACTGTT 57.676 32.000 13.67 13.67 37.67 3.16
2398 4024 7.764331 AGTAACACCAAATCGTTTTACTGTTT 58.236 30.769 14.10 1.75 37.67 2.83
2402 4028 4.038282 ACCAAATCGTTTTACTGTTTCCCC 59.962 41.667 0.00 0.00 0.00 4.81
2404 4030 5.474189 CCAAATCGTTTTACTGTTTCCCCTA 59.526 40.000 0.00 0.00 0.00 3.53
2405 4031 6.016108 CCAAATCGTTTTACTGTTTCCCCTAA 60.016 38.462 0.00 0.00 0.00 2.69
2406 4032 7.427214 CAAATCGTTTTACTGTTTCCCCTAAA 58.573 34.615 0.00 0.00 0.00 1.85
2407 4033 7.585579 AATCGTTTTACTGTTTCCCCTAAAA 57.414 32.000 0.00 0.00 0.00 1.52
2409 4035 7.030075 TCGTTTTACTGTTTCCCCTAAAAAG 57.970 36.000 0.00 0.00 38.26 2.27
2410 4036 6.602803 TCGTTTTACTGTTTCCCCTAAAAAGT 59.397 34.615 0.00 0.00 45.73 2.66
2411 4037 7.772757 TCGTTTTACTGTTTCCCCTAAAAAGTA 59.227 33.333 0.00 0.00 42.74 2.24
2412 4038 7.857389 CGTTTTACTGTTTCCCCTAAAAAGTAC 59.143 37.037 0.99 0.00 44.22 2.73
2413 4039 7.822161 TTTACTGTTTCCCCTAAAAAGTACC 57.178 36.000 0.99 0.00 44.22 3.34
2414 4040 4.733165 ACTGTTTCCCCTAAAAAGTACCC 58.267 43.478 0.00 0.00 42.74 3.69
2415 4041 4.168479 ACTGTTTCCCCTAAAAAGTACCCA 59.832 41.667 0.00 0.00 42.74 4.51
2417 4043 4.168479 TGTTTCCCCTAAAAAGTACCCACT 59.832 41.667 0.00 0.00 36.19 4.00
2418 4044 5.372066 TGTTTCCCCTAAAAAGTACCCACTA 59.628 40.000 0.00 0.00 33.48 2.74
2419 4045 5.767277 TTCCCCTAAAAAGTACCCACTAG 57.233 43.478 0.00 0.00 33.48 2.57
2420 4046 4.766768 TCCCCTAAAAAGTACCCACTAGT 58.233 43.478 0.00 0.00 33.48 2.57
2421 4047 4.533311 TCCCCTAAAAAGTACCCACTAGTG 59.467 45.833 16.34 16.34 33.48 2.74
2422 4048 4.287845 CCCCTAAAAAGTACCCACTAGTGT 59.712 45.833 21.18 6.67 33.48 3.55
2424 4050 6.301486 CCCTAAAAAGTACCCACTAGTGTTT 58.699 40.000 21.18 14.54 33.48 2.83
2425 4051 6.774170 CCCTAAAAAGTACCCACTAGTGTTTT 59.226 38.462 21.18 19.36 33.48 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.396260 AACTAGAGGTAGCGTGCAAAA 57.604 42.857 0.00 0.00 0.00 2.44
24 25 3.396260 AAACTAGAGGTAGCGTGCAAA 57.604 42.857 0.00 0.00 0.00 3.68
25 26 3.396260 AAAACTAGAGGTAGCGTGCAA 57.604 42.857 0.00 0.00 0.00 4.08
26 27 3.396260 AAAAACTAGAGGTAGCGTGCA 57.604 42.857 0.00 0.00 0.00 4.57
53 54 9.614792 CCCCATTATCTTACAGGCTTATTATAC 57.385 37.037 0.00 0.00 0.00 1.47
57 58 5.615261 TCCCCCATTATCTTACAGGCTTATT 59.385 40.000 0.00 0.00 0.00 1.40
58 59 5.170198 TCCCCCATTATCTTACAGGCTTAT 58.830 41.667 0.00 0.00 0.00 1.73
61 62 3.074857 TCCCCCATTATCTTACAGGCT 57.925 47.619 0.00 0.00 0.00 4.58
62 63 4.388577 AATCCCCCATTATCTTACAGGC 57.611 45.455 0.00 0.00 0.00 4.85
63 64 5.952387 TCAAATCCCCCATTATCTTACAGG 58.048 41.667 0.00 0.00 0.00 4.00
64 65 7.233632 TCATCAAATCCCCCATTATCTTACAG 58.766 38.462 0.00 0.00 0.00 2.74
65 66 7.160457 TCATCAAATCCCCCATTATCTTACA 57.840 36.000 0.00 0.00 0.00 2.41
66 67 8.655935 AATCATCAAATCCCCCATTATCTTAC 57.344 34.615 0.00 0.00 0.00 2.34
68 69 7.569858 ACAAATCATCAAATCCCCCATTATCTT 59.430 33.333 0.00 0.00 0.00 2.40
69 70 7.077745 ACAAATCATCAAATCCCCCATTATCT 58.922 34.615 0.00 0.00 0.00 1.98
70 71 7.307131 ACAAATCATCAAATCCCCCATTATC 57.693 36.000 0.00 0.00 0.00 1.75
71 72 6.270695 GGACAAATCATCAAATCCCCCATTAT 59.729 38.462 0.00 0.00 0.00 1.28
73 74 4.409901 GGACAAATCATCAAATCCCCCATT 59.590 41.667 0.00 0.00 0.00 3.16
74 75 3.969312 GGACAAATCATCAAATCCCCCAT 59.031 43.478 0.00 0.00 0.00 4.00
76 77 3.646534 AGGACAAATCATCAAATCCCCC 58.353 45.455 0.00 0.00 0.00 5.40
77 78 6.070656 TCATAGGACAAATCATCAAATCCCC 58.929 40.000 0.00 0.00 0.00 4.81
78 79 7.771927 ATCATAGGACAAATCATCAAATCCC 57.228 36.000 0.00 0.00 0.00 3.85
79 80 8.636213 ACAATCATAGGACAAATCATCAAATCC 58.364 33.333 0.00 0.00 0.00 3.01
80 81 9.674824 GACAATCATAGGACAAATCATCAAATC 57.325 33.333 0.00 0.00 0.00 2.17
81 82 9.417561 AGACAATCATAGGACAAATCATCAAAT 57.582 29.630 0.00 0.00 0.00 2.32
82 83 8.812513 AGACAATCATAGGACAAATCATCAAA 57.187 30.769 0.00 0.00 0.00 2.69
85 86 8.442632 TTGAGACAATCATAGGACAAATCATC 57.557 34.615 0.00 0.00 37.89 2.92
86 87 8.847196 CATTGAGACAATCATAGGACAAATCAT 58.153 33.333 0.00 0.00 37.89 2.45
87 88 8.048514 TCATTGAGACAATCATAGGACAAATCA 58.951 33.333 0.00 0.00 37.89 2.57
88 89 8.341173 GTCATTGAGACAATCATAGGACAAATC 58.659 37.037 0.00 0.00 46.77 2.17
89 90 8.218338 GTCATTGAGACAATCATAGGACAAAT 57.782 34.615 0.00 0.00 46.77 2.32
105 106 1.685224 GGGGCCACTGTCATTGAGA 59.315 57.895 4.39 0.00 0.00 3.27
106 107 1.746615 CGGGGCCACTGTCATTGAG 60.747 63.158 1.96 0.00 0.00 3.02
107 108 2.350895 CGGGGCCACTGTCATTGA 59.649 61.111 1.96 0.00 0.00 2.57
108 109 2.751436 CCGGGGCCACTGTCATTG 60.751 66.667 1.96 0.00 0.00 2.82
109 110 4.047125 CCCGGGGCCACTGTCATT 62.047 66.667 14.71 0.00 0.00 2.57
156 157 4.540715 ACTTCTTCATTTGATCATCCCCC 58.459 43.478 0.00 0.00 0.00 5.40
158 159 8.186821 CACTTTACTTCTTCATTTGATCATCCC 58.813 37.037 0.00 0.00 0.00 3.85
159 160 8.734386 ACACTTTACTTCTTCATTTGATCATCC 58.266 33.333 0.00 0.00 0.00 3.51
160 161 9.552114 CACACTTTACTTCTTCATTTGATCATC 57.448 33.333 0.00 0.00 0.00 2.92
161 162 8.517878 CCACACTTTACTTCTTCATTTGATCAT 58.482 33.333 0.00 0.00 0.00 2.45
162 163 7.522073 GCCACACTTTACTTCTTCATTTGATCA 60.522 37.037 0.00 0.00 0.00 2.92
164 165 6.265196 TGCCACACTTTACTTCTTCATTTGAT 59.735 34.615 0.00 0.00 0.00 2.57
165 166 5.592282 TGCCACACTTTACTTCTTCATTTGA 59.408 36.000 0.00 0.00 0.00 2.69
166 167 5.830912 TGCCACACTTTACTTCTTCATTTG 58.169 37.500 0.00 0.00 0.00 2.32
167 168 6.463995 TTGCCACACTTTACTTCTTCATTT 57.536 33.333 0.00 0.00 0.00 2.32
168 169 6.463995 TTTGCCACACTTTACTTCTTCATT 57.536 33.333 0.00 0.00 0.00 2.57
169 170 6.321181 TCTTTTGCCACACTTTACTTCTTCAT 59.679 34.615 0.00 0.00 0.00 2.57
171 172 6.131544 TCTTTTGCCACACTTTACTTCTTC 57.868 37.500 0.00 0.00 0.00 2.87
172 173 6.321181 TGATCTTTTGCCACACTTTACTTCTT 59.679 34.615 0.00 0.00 0.00 2.52
173 174 5.827797 TGATCTTTTGCCACACTTTACTTCT 59.172 36.000 0.00 0.00 0.00 2.85
174 175 6.072112 TGATCTTTTGCCACACTTTACTTC 57.928 37.500 0.00 0.00 0.00 3.01
175 176 6.463995 TTGATCTTTTGCCACACTTTACTT 57.536 33.333 0.00 0.00 0.00 2.24
176 177 6.463995 TTTGATCTTTTGCCACACTTTACT 57.536 33.333 0.00 0.00 0.00 2.24
178 179 8.729805 AAAATTTGATCTTTTGCCACACTTTA 57.270 26.923 0.00 0.00 0.00 1.85
179 180 7.628769 AAAATTTGATCTTTTGCCACACTTT 57.371 28.000 0.00 0.00 0.00 2.66
180 181 7.628769 AAAAATTTGATCTTTTGCCACACTT 57.371 28.000 0.00 0.00 0.00 3.16
201 202 7.173562 AGCATACACGTTGGTATCTTACAAAAA 59.826 33.333 0.00 0.00 31.75 1.94
202 203 6.651643 AGCATACACGTTGGTATCTTACAAAA 59.348 34.615 0.00 0.00 31.75 2.44
204 205 5.726397 AGCATACACGTTGGTATCTTACAA 58.274 37.500 0.00 0.00 31.75 2.41
206 207 7.095774 CCATAAGCATACACGTTGGTATCTTAC 60.096 40.741 13.64 0.00 32.59 2.34
207 208 6.926826 CCATAAGCATACACGTTGGTATCTTA 59.073 38.462 13.69 13.69 33.33 2.10
208 209 5.758296 CCATAAGCATACACGTTGGTATCTT 59.242 40.000 0.00 1.45 31.75 2.40
209 210 5.069914 TCCATAAGCATACACGTTGGTATCT 59.930 40.000 0.00 0.00 31.75 1.98
210 211 5.294356 TCCATAAGCATACACGTTGGTATC 58.706 41.667 0.00 0.00 31.75 2.24
213 214 3.620427 TCCATAAGCATACACGTTGGT 57.380 42.857 0.00 0.00 0.00 3.67
214 215 4.536364 CTTCCATAAGCATACACGTTGG 57.464 45.455 0.00 0.00 0.00 3.77
226 227 5.095490 CGCTTTTGTTTAGGCTTCCATAAG 58.905 41.667 0.00 0.00 35.68 1.73
227 228 4.762765 TCGCTTTTGTTTAGGCTTCCATAA 59.237 37.500 0.00 0.00 0.00 1.90
229 230 3.153919 TCGCTTTTGTTTAGGCTTCCAT 58.846 40.909 0.00 0.00 0.00 3.41
230 231 2.552315 CTCGCTTTTGTTTAGGCTTCCA 59.448 45.455 0.00 0.00 0.00 3.53
231 232 2.812011 TCTCGCTTTTGTTTAGGCTTCC 59.188 45.455 0.00 0.00 0.00 3.46
232 233 4.686839 ATCTCGCTTTTGTTTAGGCTTC 57.313 40.909 0.00 0.00 0.00 3.86
233 234 5.123979 CCTAATCTCGCTTTTGTTTAGGCTT 59.876 40.000 0.00 0.00 32.39 4.35
234 235 4.636206 CCTAATCTCGCTTTTGTTTAGGCT 59.364 41.667 0.00 0.00 32.39 4.58
235 236 4.634443 TCCTAATCTCGCTTTTGTTTAGGC 59.366 41.667 0.00 0.00 36.40 3.93
236 237 6.737254 TTCCTAATCTCGCTTTTGTTTAGG 57.263 37.500 0.00 0.00 37.15 2.69
238 239 8.450964 CAGAATTCCTAATCTCGCTTTTGTTTA 58.549 33.333 0.65 0.00 0.00 2.01
242 243 6.668541 TCAGAATTCCTAATCTCGCTTTTG 57.331 37.500 0.65 0.00 0.00 2.44
244 245 6.825721 ACATTCAGAATTCCTAATCTCGCTTT 59.174 34.615 0.65 0.00 0.00 3.51
245 246 6.259608 CACATTCAGAATTCCTAATCTCGCTT 59.740 38.462 0.65 0.00 0.00 4.68
249 250 7.278875 AGGTCACATTCAGAATTCCTAATCTC 58.721 38.462 0.65 0.00 0.00 2.75
250 251 7.205515 AGGTCACATTCAGAATTCCTAATCT 57.794 36.000 0.65 0.00 0.00 2.40
251 252 7.872113 AAGGTCACATTCAGAATTCCTAATC 57.128 36.000 0.65 0.00 0.00 1.75
255 256 8.324191 TCTATAAGGTCACATTCAGAATTCCT 57.676 34.615 0.65 0.00 0.00 3.36
256 257 8.964476 TTCTATAAGGTCACATTCAGAATTCC 57.036 34.615 0.65 0.00 0.00 3.01
257 258 9.823647 TCTTCTATAAGGTCACATTCAGAATTC 57.176 33.333 0.00 0.00 33.22 2.17
284 453 9.253832 TCAGGATGGCAAAGAAGAATAATTTAA 57.746 29.630 0.00 0.00 36.16 1.52
504 675 9.557338 GTATCTACCTGTATTTATGACGATGTC 57.443 37.037 0.00 0.00 0.00 3.06
505 676 9.074576 TGTATCTACCTGTATTTATGACGATGT 57.925 33.333 0.00 0.00 0.00 3.06
595 768 8.697507 ATGTTCTTAATTTCAGATGGTATCCC 57.302 34.615 0.00 0.00 0.00 3.85
629 802 9.959749 GTTCACTCAAACATACCAAAAATAAGA 57.040 29.630 0.00 0.00 0.00 2.10
632 805 8.239038 TGGTTCACTCAAACATACCAAAAATA 57.761 30.769 0.00 0.00 33.05 1.40
644 817 5.531287 ACATTTAGTCCTGGTTCACTCAAAC 59.469 40.000 0.00 0.00 0.00 2.93
675 848 3.952967 GACGGAGGGAGTAGATTTGTAGT 59.047 47.826 0.00 0.00 0.00 2.73
687 860 1.731433 TAATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
688 861 1.731433 CTAATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
689 862 1.299926 CTAATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
690 863 0.870307 CACTAATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
691 864 0.179145 ACACTAATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
692 865 1.093972 TACACTAATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
693 866 1.194495 GTACACTAATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
694 867 1.898938 TGTACACTAATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
695 868 3.703420 AGATGTACACTAATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
696 869 4.818005 TCTAGATGTACACTAATTCGCGGA 59.182 41.667 6.13 0.00 0.00 5.54
697 870 5.104562 TCTAGATGTACACTAATTCGCGG 57.895 43.478 6.13 0.00 0.00 6.46
698 871 7.624706 AAATCTAGATGTACACTAATTCGCG 57.375 36.000 5.86 0.00 0.00 5.87
699 872 8.818057 ACAAAATCTAGATGTACACTAATTCGC 58.182 33.333 5.86 0.00 0.00 4.70
706 879 9.036980 ACTTAGGACAAAATCTAGATGTACACT 57.963 33.333 5.86 0.13 30.01 3.55
707 880 9.303537 GACTTAGGACAAAATCTAGATGTACAC 57.696 37.037 5.86 0.00 30.01 2.90
708 881 9.031537 TGACTTAGGACAAAATCTAGATGTACA 57.968 33.333 5.86 0.00 30.01 2.90
709 882 9.871238 TTGACTTAGGACAAAATCTAGATGTAC 57.129 33.333 5.86 2.30 0.00 2.90
711 884 9.793259 TTTTGACTTAGGACAAAATCTAGATGT 57.207 29.630 5.86 0.99 40.21 3.06
721 894 9.936759 AGTTTCAAAATTTTGACTTAGGACAAA 57.063 25.926 28.78 16.21 45.99 2.83
722 895 9.936759 AAGTTTCAAAATTTTGACTTAGGACAA 57.063 25.926 28.78 16.82 45.99 3.18
723 896 9.936759 AAAGTTTCAAAATTTTGACTTAGGACA 57.063 25.926 28.78 12.29 45.99 4.02
749 922 9.332502 TGCTACTTTTCACAATAAAGTTAGTCA 57.667 29.630 6.33 0.00 41.69 3.41
751 924 9.946165 GTTGCTACTTTTCACAATAAAGTTAGT 57.054 29.630 6.33 0.00 41.69 2.24
752 925 9.944663 TGTTGCTACTTTTCACAATAAAGTTAG 57.055 29.630 6.33 4.36 41.69 2.34
754 927 9.816354 AATGTTGCTACTTTTCACAATAAAGTT 57.184 25.926 6.33 0.00 41.69 2.66
755 928 9.816354 AAATGTTGCTACTTTTCACAATAAAGT 57.184 25.926 6.38 0.00 45.19 2.66
762 935 9.672086 GTGTTATAAATGTTGCTACTTTTCACA 57.328 29.630 13.76 12.39 34.56 3.58
763 936 9.893305 AGTGTTATAAATGTTGCTACTTTTCAC 57.107 29.630 13.76 14.39 34.56 3.18
802 975 9.959749 TGGAAGTACATTTCAAAACAAATCTAC 57.040 29.630 0.00 0.00 0.00 2.59
893 1066 8.280497 CGCAAATAAGTGTACTAAGTCAAAACT 58.720 33.333 0.00 0.00 37.32 2.66
894 1067 7.532884 CCGCAAATAAGTGTACTAAGTCAAAAC 59.467 37.037 0.00 0.00 0.00 2.43
895 1068 7.441760 TCCGCAAATAAGTGTACTAAGTCAAAA 59.558 33.333 0.00 0.00 0.00 2.44
896 1069 6.930164 TCCGCAAATAAGTGTACTAAGTCAAA 59.070 34.615 0.00 0.00 0.00 2.69
897 1070 6.366877 GTCCGCAAATAAGTGTACTAAGTCAA 59.633 38.462 0.00 0.00 0.00 3.18
898 1071 5.865552 GTCCGCAAATAAGTGTACTAAGTCA 59.134 40.000 0.00 0.00 0.00 3.41
899 1072 5.865552 TGTCCGCAAATAAGTGTACTAAGTC 59.134 40.000 0.00 0.00 0.00 3.01
900 1073 5.786311 TGTCCGCAAATAAGTGTACTAAGT 58.214 37.500 0.00 0.00 0.00 2.24
901 1074 6.097356 TCTGTCCGCAAATAAGTGTACTAAG 58.903 40.000 0.00 0.00 0.00 2.18
902 1075 6.028146 TCTGTCCGCAAATAAGTGTACTAA 57.972 37.500 0.00 0.00 0.00 2.24
903 1076 5.393787 CCTCTGTCCGCAAATAAGTGTACTA 60.394 44.000 0.00 0.00 0.00 1.82
904 1077 4.495422 CTCTGTCCGCAAATAAGTGTACT 58.505 43.478 0.00 0.00 0.00 2.73
905 1078 3.617263 CCTCTGTCCGCAAATAAGTGTAC 59.383 47.826 0.00 0.00 0.00 2.90
906 1079 3.369052 CCCTCTGTCCGCAAATAAGTGTA 60.369 47.826 0.00 0.00 0.00 2.90
907 1080 2.615493 CCCTCTGTCCGCAAATAAGTGT 60.615 50.000 0.00 0.00 0.00 3.55
908 1081 2.009774 CCCTCTGTCCGCAAATAAGTG 58.990 52.381 0.00 0.00 0.00 3.16
909 1082 1.906574 TCCCTCTGTCCGCAAATAAGT 59.093 47.619 0.00 0.00 0.00 2.24
910 1083 2.093447 ACTCCCTCTGTCCGCAAATAAG 60.093 50.000 0.00 0.00 0.00 1.73
911 1084 1.906574 ACTCCCTCTGTCCGCAAATAA 59.093 47.619 0.00 0.00 0.00 1.40
912 1085 1.568504 ACTCCCTCTGTCCGCAAATA 58.431 50.000 0.00 0.00 0.00 1.40
913 1086 1.568504 TACTCCCTCTGTCCGCAAAT 58.431 50.000 0.00 0.00 0.00 2.32
914 1087 1.568504 ATACTCCCTCTGTCCGCAAA 58.431 50.000 0.00 0.00 0.00 3.68
915 1088 2.447408 TATACTCCCTCTGTCCGCAA 57.553 50.000 0.00 0.00 0.00 4.85
916 1089 2.092049 TCTTATACTCCCTCTGTCCGCA 60.092 50.000 0.00 0.00 0.00 5.69
917 1090 2.584236 TCTTATACTCCCTCTGTCCGC 58.416 52.381 0.00 0.00 0.00 5.54
918 1091 4.396790 GCTATCTTATACTCCCTCTGTCCG 59.603 50.000 0.00 0.00 0.00 4.79
919 1092 5.326069 TGCTATCTTATACTCCCTCTGTCC 58.674 45.833 0.00 0.00 0.00 4.02
920 1093 6.661377 TGATGCTATCTTATACTCCCTCTGTC 59.339 42.308 0.00 0.00 0.00 3.51
921 1094 6.556639 TGATGCTATCTTATACTCCCTCTGT 58.443 40.000 0.00 0.00 0.00 3.41
922 1095 6.096705 CCTGATGCTATCTTATACTCCCTCTG 59.903 46.154 0.00 0.00 0.00 3.35
923 1096 6.194235 CCTGATGCTATCTTATACTCCCTCT 58.806 44.000 0.00 0.00 0.00 3.69
924 1097 5.955355 ACCTGATGCTATCTTATACTCCCTC 59.045 44.000 0.00 0.00 0.00 4.30
925 1098 5.719085 CACCTGATGCTATCTTATACTCCCT 59.281 44.000 0.00 0.00 0.00 4.20
926 1099 5.971763 CACCTGATGCTATCTTATACTCCC 58.028 45.833 0.00 0.00 0.00 4.30
946 1119 3.918253 TTGGGCGTCCAGATGCACC 62.918 63.158 9.61 10.99 45.85 5.01
991 1166 2.352561 TTCCCCTCCATAAGGTCACA 57.647 50.000 0.00 0.00 44.56 3.58
992 1167 3.010250 AGTTTTCCCCTCCATAAGGTCAC 59.990 47.826 0.00 0.00 44.56 3.67
1082 1257 5.008331 GGAGACACATATATAGGGACACGA 58.992 45.833 0.00 0.00 0.00 4.35
1130 1307 9.220767 GAGAAATCCATACTAAGAAACTTGTGT 57.779 33.333 0.00 0.00 0.00 3.72
1131 1308 9.442047 AGAGAAATCCATACTAAGAAACTTGTG 57.558 33.333 0.00 0.00 0.00 3.33
1144 1321 9.988815 ACATACATCAGTAAGAGAAATCCATAC 57.011 33.333 0.00 0.00 33.13 2.39
1146 1323 9.553064 GAACATACATCAGTAAGAGAAATCCAT 57.447 33.333 0.00 0.00 33.13 3.41
1147 1324 8.762645 AGAACATACATCAGTAAGAGAAATCCA 58.237 33.333 0.00 0.00 33.13 3.41
1148 1325 9.606631 AAGAACATACATCAGTAAGAGAAATCC 57.393 33.333 0.00 0.00 33.13 3.01
1171 1348 7.045693 AGGGCTAGGAGACACATATATAAGA 57.954 40.000 0.00 0.00 0.00 2.10
1173 1350 6.195700 GGAGGGCTAGGAGACACATATATAA 58.804 44.000 0.00 0.00 0.00 0.98
1182 1359 0.978146 GCTTGGAGGGCTAGGAGACA 60.978 60.000 0.00 0.00 0.00 3.41
1188 1365 2.968574 TCTATTCTGCTTGGAGGGCTAG 59.031 50.000 0.00 0.00 0.00 3.42
1191 1368 2.092699 AGTTCTATTCTGCTTGGAGGGC 60.093 50.000 0.00 0.00 0.00 5.19
1192 1369 3.922171 AGTTCTATTCTGCTTGGAGGG 57.078 47.619 0.00 0.00 0.00 4.30
1207 1384 8.867097 TCCATACTAAGAAACTTGTGTAGTTCT 58.133 33.333 0.00 0.00 46.34 3.01
1208 1385 9.654663 ATCCATACTAAGAAACTTGTGTAGTTC 57.345 33.333 0.00 0.00 46.34 3.01
1213 1390 9.220767 GAGAAATCCATACTAAGAAACTTGTGT 57.779 33.333 0.00 0.00 0.00 3.72
1229 1406 6.363065 ACATACATCAGCAAGAGAAATCCAT 58.637 36.000 0.00 0.00 0.00 3.41
1242 1419 4.507710 TGTGGAGAAGAACATACATCAGC 58.492 43.478 0.00 0.00 0.00 4.26
1372 1552 7.171678 ACTTTGAAGAATCCTCGAACTTTACAG 59.828 37.037 0.00 0.00 0.00 2.74
1390 1570 4.336433 ACACATTCACAGGACACTTTGAAG 59.664 41.667 3.23 0.00 44.12 3.02
1457 1637 7.388500 ACTGGGCATCATTTTTCATTGTTTTAG 59.612 33.333 0.00 0.00 0.00 1.85
1553 1733 7.953752 TCCATGCAAGCATCAATTATCAAATA 58.046 30.769 4.24 0.00 33.90 1.40
1554 1734 6.822442 TCCATGCAAGCATCAATTATCAAAT 58.178 32.000 4.24 0.00 33.90 2.32
1565 1745 3.484407 ACCTCTATTCCATGCAAGCATC 58.516 45.455 4.24 0.00 33.90 3.91
1627 1809 0.178955 TCCACGACAAGGACTACCCA 60.179 55.000 0.00 0.00 37.41 4.51
1763 2444 0.032952 GTGTTGGTGCGGTGAGTAGA 59.967 55.000 0.00 0.00 0.00 2.59
1828 2521 2.385875 CGACGAGCAATGCAGCACT 61.386 57.895 8.35 0.00 36.85 4.40
1869 2569 0.602638 TGGTTACAGAAGGCTGCGTG 60.603 55.000 0.00 0.00 46.26 5.34
1898 2598 1.466360 GCAAGATGGCGTGACATTGAC 60.466 52.381 0.00 0.00 0.00 3.18
1993 2695 0.521291 TTCATTGGCGCGGAGAAAAG 59.479 50.000 8.83 0.00 0.00 2.27
2087 3621 9.383519 CAAGAAGCCTATCTATTTACTCAAACA 57.616 33.333 0.00 0.00 0.00 2.83
2162 3696 5.367644 ACCGCTTACCTTTACTGGGTTATAT 59.632 40.000 0.00 0.00 38.19 0.86
2190 3724 7.420800 CAAACTTAGTGGATGATATTTCTGCC 58.579 38.462 0.00 0.00 0.00 4.85
2227 3761 7.122650 TGAGATGAATTTGAACCAGGAATTACC 59.877 37.037 0.00 0.00 39.35 2.85
2276 3902 0.233848 GGTGTTACTTGCACCGAACG 59.766 55.000 0.00 0.00 45.57 3.95
2282 3908 1.519408 ACGGATGGTGTTACTTGCAC 58.481 50.000 0.00 0.00 36.22 4.57
2283 3909 2.563620 TCTACGGATGGTGTTACTTGCA 59.436 45.455 0.00 0.00 0.00 4.08
2284 3910 3.187700 CTCTACGGATGGTGTTACTTGC 58.812 50.000 0.00 0.00 0.00 4.01
2286 3912 3.097614 AGCTCTACGGATGGTGTTACTT 58.902 45.455 0.00 0.00 0.00 2.24
2288 3914 2.810650 CAGCTCTACGGATGGTGTTAC 58.189 52.381 0.00 0.00 0.00 2.50
2289 3915 1.136305 GCAGCTCTACGGATGGTGTTA 59.864 52.381 0.00 0.00 0.00 2.41
2290 3916 0.108138 GCAGCTCTACGGATGGTGTT 60.108 55.000 0.00 0.00 0.00 3.32
2291 3917 1.257750 TGCAGCTCTACGGATGGTGT 61.258 55.000 0.00 0.00 0.00 4.16
2292 3918 0.108186 TTGCAGCTCTACGGATGGTG 60.108 55.000 0.00 0.00 0.00 4.17
2293 3919 0.176680 CTTGCAGCTCTACGGATGGT 59.823 55.000 0.00 0.00 0.00 3.55
2294 3920 1.156645 GCTTGCAGCTCTACGGATGG 61.157 60.000 0.00 0.00 38.45 3.51
2295 3921 0.460811 TGCTTGCAGCTCTACGGATG 60.461 55.000 9.12 0.00 42.97 3.51
2297 3923 0.670546 GTTGCTTGCAGCTCTACGGA 60.671 55.000 9.12 0.00 42.97 4.69
2299 3925 0.164647 GTGTTGCTTGCAGCTCTACG 59.835 55.000 10.50 0.00 42.97 3.51
2300 3926 0.519077 GGTGTTGCTTGCAGCTCTAC 59.481 55.000 10.50 1.32 42.97 2.59
2301 3927 0.606401 GGGTGTTGCTTGCAGCTCTA 60.606 55.000 10.50 0.00 42.97 2.43
2302 3928 1.900498 GGGTGTTGCTTGCAGCTCT 60.900 57.895 10.50 0.00 42.97 4.09
2303 3929 1.458639 AAGGGTGTTGCTTGCAGCTC 61.459 55.000 10.50 6.94 42.97 4.09
2304 3930 1.456331 AAGGGTGTTGCTTGCAGCT 60.456 52.632 10.50 0.00 42.97 4.24
2305 3931 1.300388 CAAGGGTGTTGCTTGCAGC 60.300 57.895 2.51 2.51 42.82 5.25
2306 3932 1.108727 TCCAAGGGTGTTGCTTGCAG 61.109 55.000 0.00 0.00 0.00 4.41
2307 3933 1.076412 TCCAAGGGTGTTGCTTGCA 60.076 52.632 0.00 0.00 0.00 4.08
2308 3934 1.109323 ACTCCAAGGGTGTTGCTTGC 61.109 55.000 0.00 0.00 0.00 4.01
2310 3936 1.545651 GCTACTCCAAGGGTGTTGCTT 60.546 52.381 13.81 0.00 41.78 3.91
2311 3937 0.036875 GCTACTCCAAGGGTGTTGCT 59.963 55.000 13.81 0.00 41.78 3.91
2312 3938 0.036875 AGCTACTCCAAGGGTGTTGC 59.963 55.000 13.40 13.40 43.93 4.17
2313 3939 2.093447 CCTAGCTACTCCAAGGGTGTTG 60.093 54.545 0.00 0.00 31.55 3.33
2315 3941 1.361543 TCCTAGCTACTCCAAGGGTGT 59.638 52.381 0.00 0.00 33.75 4.16
2316 3942 2.035632 CTCCTAGCTACTCCAAGGGTG 58.964 57.143 0.00 0.00 0.00 4.61
2318 3944 1.044611 GCTCCTAGCTACTCCAAGGG 58.955 60.000 0.00 0.00 38.45 3.95
2319 3945 1.044611 GGCTCCTAGCTACTCCAAGG 58.955 60.000 0.00 0.00 41.99 3.61
2320 3946 1.781786 TGGCTCCTAGCTACTCCAAG 58.218 55.000 0.00 0.00 41.99 3.61
2327 3953 1.414158 GATGTGGTGGCTCCTAGCTA 58.586 55.000 7.19 0.00 41.99 3.32
2328 3954 1.680522 CGATGTGGTGGCTCCTAGCT 61.681 60.000 7.19 0.00 41.99 3.32
2330 3956 0.179100 CACGATGTGGTGGCTCCTAG 60.179 60.000 7.19 0.00 37.07 3.02
2331 3957 0.902984 ACACGATGTGGTGGCTCCTA 60.903 55.000 7.19 0.00 42.23 2.94
2332 3958 0.902984 TACACGATGTGGTGGCTCCT 60.903 55.000 7.19 0.00 42.23 3.69
2333 3959 0.739813 GTACACGATGTGGTGGCTCC 60.740 60.000 0.00 0.00 42.23 4.70
2334 3960 0.246635 AGTACACGATGTGGTGGCTC 59.753 55.000 1.64 0.00 42.23 4.70
2335 3961 0.246635 GAGTACACGATGTGGTGGCT 59.753 55.000 1.64 0.00 42.23 4.75
2336 3962 0.739813 GGAGTACACGATGTGGTGGC 60.740 60.000 1.64 0.00 42.23 5.01
2337 3963 0.606096 TGGAGTACACGATGTGGTGG 59.394 55.000 1.64 0.00 42.23 4.61
2338 3964 2.448926 TTGGAGTACACGATGTGGTG 57.551 50.000 1.64 0.00 43.54 4.17
2339 3965 2.354704 CCATTGGAGTACACGATGTGGT 60.355 50.000 13.58 0.00 37.94 4.16
2343 3969 3.374058 GGAAACCATTGGAGTACACGATG 59.626 47.826 10.37 9.65 0.00 3.84
2344 3970 3.606687 GGAAACCATTGGAGTACACGAT 58.393 45.455 10.37 0.00 0.00 3.73
2345 3971 3.048337 GGAAACCATTGGAGTACACGA 57.952 47.619 10.37 0.00 0.00 4.35
2360 3986 6.468333 TTGGTGTTACTTTTTAGGGGAAAC 57.532 37.500 0.00 0.00 0.00 2.78
2362 3988 6.016108 CGATTTGGTGTTACTTTTTAGGGGAA 60.016 38.462 0.00 0.00 0.00 3.97
2363 3989 5.474189 CGATTTGGTGTTACTTTTTAGGGGA 59.526 40.000 0.00 0.00 0.00 4.81
2364 3990 5.242171 ACGATTTGGTGTTACTTTTTAGGGG 59.758 40.000 0.00 0.00 0.00 4.79
2365 3991 6.321848 ACGATTTGGTGTTACTTTTTAGGG 57.678 37.500 0.00 0.00 0.00 3.53
2369 3995 9.078753 CAGTAAAACGATTTGGTGTTACTTTTT 57.921 29.630 5.78 0.00 44.64 1.94
2370 3996 8.245491 ACAGTAAAACGATTTGGTGTTACTTTT 58.755 29.630 5.78 0.00 44.64 2.27
2371 3997 7.764331 ACAGTAAAACGATTTGGTGTTACTTT 58.236 30.769 5.78 0.00 44.64 2.66
2372 3998 7.324354 ACAGTAAAACGATTTGGTGTTACTT 57.676 32.000 5.78 0.00 44.64 2.24
2373 3999 6.930667 ACAGTAAAACGATTTGGTGTTACT 57.069 33.333 0.28 3.30 46.77 2.24
2375 4001 7.194962 GGAAACAGTAAAACGATTTGGTGTTA 58.805 34.615 15.50 0.00 35.98 2.41
2377 4003 5.450826 GGGAAACAGTAAAACGATTTGGTGT 60.451 40.000 0.28 1.66 31.03 4.16
2378 4004 4.979815 GGGAAACAGTAAAACGATTTGGTG 59.020 41.667 0.28 1.06 0.00 4.17
2379 4005 4.038282 GGGGAAACAGTAAAACGATTTGGT 59.962 41.667 0.28 0.00 0.00 3.67
2383 4009 7.585579 TTTTAGGGGAAACAGTAAAACGATT 57.414 32.000 0.00 0.00 29.21 3.34
2384 4010 7.286087 ACTTTTTAGGGGAAACAGTAAAACGAT 59.714 33.333 0.00 0.00 36.50 3.73
2385 4011 6.602803 ACTTTTTAGGGGAAACAGTAAAACGA 59.397 34.615 0.00 0.00 36.50 3.85
2387 4013 8.137437 GGTACTTTTTAGGGGAAACAGTAAAAC 58.863 37.037 0.00 0.00 40.36 2.43
2388 4014 7.287466 GGGTACTTTTTAGGGGAAACAGTAAAA 59.713 37.037 0.00 0.00 40.36 1.52
2390 4016 6.126244 TGGGTACTTTTTAGGGGAAACAGTAA 60.126 38.462 0.00 0.00 40.36 2.24
2391 4017 5.372066 TGGGTACTTTTTAGGGGAAACAGTA 59.628 40.000 0.00 0.00 38.64 2.74
2392 4018 4.168479 TGGGTACTTTTTAGGGGAAACAGT 59.832 41.667 0.00 0.00 40.40 3.55
2394 4020 4.168479 AGTGGGTACTTTTTAGGGGAAACA 59.832 41.667 0.00 0.00 31.66 2.83
2396 4022 5.612261 ACTAGTGGGTACTTTTTAGGGGAAA 59.388 40.000 0.00 0.00 38.36 3.13
2397 4023 5.013391 CACTAGTGGGTACTTTTTAGGGGAA 59.987 44.000 15.49 0.00 38.36 3.97
2398 4024 4.533311 CACTAGTGGGTACTTTTTAGGGGA 59.467 45.833 15.49 0.00 38.36 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.