Multiple sequence alignment - TraesCS3B01G520700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G520700 chr3B 100.000 3266 0 0 1 3266 763775489 763772224 0.000000e+00 6032.0
1 TraesCS3B01G520700 chr3B 92.788 416 28 2 1416 1830 416151854 416151440 4.660000e-168 601.0
2 TraesCS3B01G520700 chr3B 81.395 344 35 14 2045 2385 416150255 416149938 1.500000e-63 254.0
3 TraesCS3B01G520700 chr3B 77.696 408 50 24 851 1229 416152506 416152111 9.180000e-51 211.0
4 TraesCS3B01G520700 chr3B 87.611 113 8 4 1241 1353 416152057 416151951 3.420000e-25 126.0
5 TraesCS3B01G520700 chr3D 90.131 2756 178 31 396 3124 573689592 573692280 0.000000e+00 3496.0
6 TraesCS3B01G520700 chr3D 92.701 411 28 2 1415 1824 305580070 305580479 2.810000e-165 592.0
7 TraesCS3B01G520700 chr3D 80.609 361 38 16 2045 2403 305581334 305581664 1.950000e-62 250.0
8 TraesCS3B01G520700 chr3D 86.667 165 21 1 1066 1229 305579654 305579818 7.200000e-42 182.0
9 TraesCS3B01G520700 chr3D 93.684 95 6 0 1824 1918 305580594 305580688 3.400000e-30 143.0
10 TraesCS3B01G520700 chr3D 88.496 113 7 4 1241 1353 305579863 305579969 7.350000e-27 132.0
11 TraesCS3B01G520700 chr3D 80.368 163 17 5 3119 3266 579660944 579661106 3.450000e-20 110.0
12 TraesCS3B01G520700 chr3A 88.544 2767 193 38 396 3121 708321776 708324459 0.000000e+00 3240.0
13 TraesCS3B01G520700 chr3A 92.244 722 44 4 1784 2496 708325248 708325966 0.000000e+00 1013.0
14 TraesCS3B01G520700 chr3A 92.665 409 30 0 1416 1824 423619438 423619846 1.010000e-164 590.0
15 TraesCS3B01G520700 chr3A 78.269 566 53 23 2491 3044 708330360 708330867 1.900000e-77 300.0
16 TraesCS3B01G520700 chr3A 79.817 436 46 24 2045 2472 423620973 423621374 2.480000e-71 279.0
17 TraesCS3B01G520700 chr3A 77.007 548 70 37 840 1353 423618821 423619346 2.500000e-66 263.0
18 TraesCS3B01G520700 chr3A 93.000 100 6 1 1820 1918 423619967 423620066 9.440000e-31 145.0
19 TraesCS3B01G520700 chr5D 80.000 475 65 15 2667 3120 483003208 483003673 1.130000e-84 324.0
20 TraesCS3B01G520700 chr5B 92.308 117 9 0 281 397 38365124 38365240 2.020000e-37 167.0
21 TraesCS3B01G520700 chr5B 87.500 136 13 4 274 408 655152580 655152448 1.570000e-33 154.0
22 TraesCS3B01G520700 chr2B 90.909 121 11 0 281 401 209075695 209075815 2.610000e-36 163.0
23 TraesCS3B01G520700 chr2B 82.692 156 14 1 3119 3261 449123057 449123212 3.420000e-25 126.0
24 TraesCS3B01G520700 chr1D 91.453 117 10 0 281 397 408872403 408872519 9.380000e-36 161.0
25 TraesCS3B01G520700 chr1D 82.500 160 15 7 3119 3265 406666965 406666806 9.510000e-26 128.0
26 TraesCS3B01G520700 chr1D 81.988 161 16 1 3119 3266 136948958 136949118 1.230000e-24 124.0
27 TraesCS3B01G520700 chr6B 89.516 124 13 0 274 397 618132537 618132660 1.210000e-34 158.0
28 TraesCS3B01G520700 chr6B 83.851 161 13 1 3119 3266 10690936 10690776 1.220000e-29 141.0
29 TraesCS3B01G520700 chr6B 83.436 163 12 5 3119 3266 717422093 717422255 1.580000e-28 137.0
30 TraesCS3B01G520700 chr2A 88.976 127 14 0 271 397 739282669 739282543 1.210000e-34 158.0
31 TraesCS3B01G520700 chr6D 88.462 130 13 2 268 397 108860638 108860765 4.360000e-34 156.0
32 TraesCS3B01G520700 chr6D 88.462 130 13 2 268 397 302751864 302751991 4.360000e-34 156.0
33 TraesCS3B01G520700 chr6D 83.951 162 11 3 3119 3266 468582086 468581926 1.220000e-29 141.0
34 TraesCS3B01G520700 chr4B 88.889 126 14 0 281 406 141456040 141455915 4.360000e-34 156.0
35 TraesCS3B01G520700 chr7A 85.093 161 11 1 3119 3266 287530124 287530284 5.640000e-33 152.0
36 TraesCS3B01G520700 chr7B 83.333 156 13 1 3119 3261 484274396 484274551 7.350000e-27 132.0
37 TraesCS3B01G520700 chr7B 78.981 157 14 4 3127 3266 69783986 69784140 4.490000e-14 89.8
38 TraesCS3B01G520700 chrUn 88.679 106 10 2 3122 3227 67351624 67351727 9.510000e-26 128.0
39 TraesCS3B01G520700 chrUn 88.679 106 10 2 3122 3227 271436160 271436057 9.510000e-26 128.0
40 TraesCS3B01G520700 chr5A 82.099 162 14 3 3119 3266 480290997 480291157 1.230000e-24 124.0
41 TraesCS3B01G520700 chr4D 82.500 160 9 10 3124 3266 487093047 487093204 4.430000e-24 122.0
42 TraesCS3B01G520700 chr6A 80.625 160 18 3 3120 3266 384873148 384873307 9.580000e-21 111.0
43 TraesCS3B01G520700 chr7D 87.692 65 7 1 3201 3265 2490673 2490610 1.260000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G520700 chr3B 763772224 763775489 3265 True 6032.00 6032 100.00000 1 3266 1 chr3B.!!$R1 3265
1 TraesCS3B01G520700 chr3B 416149938 416152506 2568 True 298.00 601 84.87250 851 2385 4 chr3B.!!$R2 1534
2 TraesCS3B01G520700 chr3D 573689592 573692280 2688 False 3496.00 3496 90.13100 396 3124 1 chr3D.!!$F1 2728
3 TraesCS3B01G520700 chr3D 305579654 305581664 2010 False 259.80 592 88.43140 1066 2403 5 chr3D.!!$F3 1337
4 TraesCS3B01G520700 chr3A 708321776 708325966 4190 False 2126.50 3240 90.39400 396 3121 2 chr3A.!!$F3 2725
5 TraesCS3B01G520700 chr3A 423618821 423621374 2553 False 319.25 590 85.62225 840 2472 4 chr3A.!!$F2 1632
6 TraesCS3B01G520700 chr3A 708330360 708330867 507 False 300.00 300 78.26900 2491 3044 1 chr3A.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
302 303 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 3095 0.798389 TCATCGTCTTTGCGAGCTCG 60.798 55.0 31.37 31.37 44.43 5.03 R
2284 3458 2.086610 AACTGCAACAAATGGGACCT 57.913 45.0 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.924511 AATTTTAGTCACATACCATATGAGGG 57.075 34.615 3.65 0.00 0.00 4.30
28 29 6.433847 TTTAGTCACATACCATATGAGGGG 57.566 41.667 3.65 0.00 0.00 4.79
29 30 2.639839 AGTCACATACCATATGAGGGGC 59.360 50.000 3.65 0.00 0.00 5.80
30 31 2.371841 GTCACATACCATATGAGGGGCA 59.628 50.000 3.65 0.00 0.00 5.36
31 32 3.052329 TCACATACCATATGAGGGGCAA 58.948 45.455 3.65 0.00 0.00 4.52
32 33 3.461458 TCACATACCATATGAGGGGCAAA 59.539 43.478 3.65 0.00 0.00 3.68
33 34 4.079500 TCACATACCATATGAGGGGCAAAA 60.080 41.667 3.65 0.00 0.00 2.44
34 35 4.648762 CACATACCATATGAGGGGCAAAAA 59.351 41.667 3.65 0.00 0.00 1.94
68 69 4.469552 GTGTCATTAAACACCGTTAAGGC 58.530 43.478 0.00 0.00 46.52 4.35
69 70 3.502979 TGTCATTAAACACCGTTAAGGCC 59.497 43.478 0.00 0.00 46.52 5.19
70 71 3.083293 TCATTAAACACCGTTAAGGCCC 58.917 45.455 0.00 0.00 46.52 5.80
71 72 2.653234 TTAAACACCGTTAAGGCCCA 57.347 45.000 0.00 0.00 46.52 5.36
72 73 2.653234 TAAACACCGTTAAGGCCCAA 57.347 45.000 0.00 0.00 46.52 4.12
73 74 1.777941 AAACACCGTTAAGGCCCAAA 58.222 45.000 0.00 0.00 46.52 3.28
74 75 1.777941 AACACCGTTAAGGCCCAAAA 58.222 45.000 0.00 0.00 46.52 2.44
75 76 2.003937 ACACCGTTAAGGCCCAAAAT 57.996 45.000 0.00 0.00 46.52 1.82
76 77 1.616374 ACACCGTTAAGGCCCAAAATG 59.384 47.619 0.00 0.00 46.52 2.32
77 78 1.067213 CACCGTTAAGGCCCAAAATGG 60.067 52.381 15.65 15.65 46.52 3.16
78 79 1.203075 ACCGTTAAGGCCCAAAATGGA 60.203 47.619 21.52 0.00 46.52 3.41
79 80 2.107366 CCGTTAAGGCCCAAAATGGAT 58.893 47.619 13.05 0.00 40.96 3.41
80 81 2.159114 CCGTTAAGGCCCAAAATGGATG 60.159 50.000 13.05 0.00 40.96 3.51
81 82 2.757868 CGTTAAGGCCCAAAATGGATGA 59.242 45.455 0.00 0.00 40.96 2.92
82 83 3.194542 CGTTAAGGCCCAAAATGGATGAA 59.805 43.478 0.00 0.00 40.96 2.57
83 84 4.677779 CGTTAAGGCCCAAAATGGATGAAG 60.678 45.833 0.00 0.00 40.96 3.02
84 85 1.870064 AGGCCCAAAATGGATGAAGG 58.130 50.000 0.00 0.00 40.96 3.46
85 86 1.079323 AGGCCCAAAATGGATGAAGGT 59.921 47.619 0.00 0.00 40.96 3.50
86 87 1.207811 GGCCCAAAATGGATGAAGGTG 59.792 52.381 0.00 0.00 40.96 4.00
87 88 1.901833 GCCCAAAATGGATGAAGGTGT 59.098 47.619 0.00 0.00 40.96 4.16
88 89 2.094026 GCCCAAAATGGATGAAGGTGTC 60.094 50.000 0.00 0.00 40.96 3.67
89 90 3.164268 CCCAAAATGGATGAAGGTGTCA 58.836 45.455 0.00 0.00 40.96 3.58
102 103 7.716799 ATGAAGGTGTCATAAAAGGCATAAA 57.283 32.000 0.00 0.00 45.59 1.40
103 104 7.716799 TGAAGGTGTCATAAAAGGCATAAAT 57.283 32.000 0.00 0.00 0.00 1.40
104 105 8.133024 TGAAGGTGTCATAAAAGGCATAAATT 57.867 30.769 0.00 0.00 0.00 1.82
105 106 8.592809 TGAAGGTGTCATAAAAGGCATAAATTT 58.407 29.630 0.00 0.00 0.00 1.82
106 107 9.435688 GAAGGTGTCATAAAAGGCATAAATTTT 57.564 29.630 0.00 0.00 33.42 1.82
107 108 8.776376 AGGTGTCATAAAAGGCATAAATTTTG 57.224 30.769 0.00 0.00 31.41 2.44
108 109 7.823799 AGGTGTCATAAAAGGCATAAATTTTGG 59.176 33.333 0.00 0.00 31.41 3.28
109 110 7.821846 GGTGTCATAAAAGGCATAAATTTTGGA 59.178 33.333 0.00 0.00 31.41 3.53
110 111 8.655970 GTGTCATAAAAGGCATAAATTTTGGAC 58.344 33.333 0.00 0.00 36.10 4.02
111 112 8.592809 TGTCATAAAAGGCATAAATTTTGGACT 58.407 29.630 0.00 0.00 36.30 3.85
112 113 9.087424 GTCATAAAAGGCATAAATTTTGGACTC 57.913 33.333 0.00 0.00 34.57 3.36
113 114 8.811017 TCATAAAAGGCATAAATTTTGGACTCA 58.189 29.630 0.00 0.00 31.41 3.41
114 115 9.090692 CATAAAAGGCATAAATTTTGGACTCAG 57.909 33.333 0.00 0.00 31.41 3.35
115 116 6.670695 AAAGGCATAAATTTTGGACTCAGT 57.329 33.333 0.00 0.00 0.00 3.41
116 117 5.649782 AGGCATAAATTTTGGACTCAGTG 57.350 39.130 0.00 0.00 0.00 3.66
117 118 5.079643 AGGCATAAATTTTGGACTCAGTGT 58.920 37.500 0.00 0.00 0.00 3.55
118 119 5.539955 AGGCATAAATTTTGGACTCAGTGTT 59.460 36.000 0.00 0.00 0.00 3.32
119 120 6.719370 AGGCATAAATTTTGGACTCAGTGTTA 59.281 34.615 0.00 0.00 0.00 2.41
120 121 6.806739 GGCATAAATTTTGGACTCAGTGTTAC 59.193 38.462 0.00 0.00 0.00 2.50
121 122 7.367285 GCATAAATTTTGGACTCAGTGTTACA 58.633 34.615 0.00 0.00 0.00 2.41
122 123 8.028938 GCATAAATTTTGGACTCAGTGTTACAT 58.971 33.333 0.00 0.00 0.00 2.29
125 126 7.687941 AATTTTGGACTCAGTGTTACATAGG 57.312 36.000 0.00 0.00 0.00 2.57
126 127 6.428083 TTTTGGACTCAGTGTTACATAGGA 57.572 37.500 0.00 0.00 0.00 2.94
127 128 6.428083 TTTGGACTCAGTGTTACATAGGAA 57.572 37.500 0.00 0.00 0.00 3.36
128 129 6.428083 TTGGACTCAGTGTTACATAGGAAA 57.572 37.500 0.00 0.00 0.00 3.13
129 130 6.037786 TGGACTCAGTGTTACATAGGAAAG 57.962 41.667 0.00 0.00 0.00 2.62
130 131 5.778241 TGGACTCAGTGTTACATAGGAAAGA 59.222 40.000 0.00 0.00 0.00 2.52
131 132 6.269077 TGGACTCAGTGTTACATAGGAAAGAA 59.731 38.462 0.00 0.00 0.00 2.52
132 133 7.159372 GGACTCAGTGTTACATAGGAAAGAAA 58.841 38.462 0.00 0.00 0.00 2.52
133 134 7.824779 GGACTCAGTGTTACATAGGAAAGAAAT 59.175 37.037 0.00 0.00 0.00 2.17
134 135 9.871238 GACTCAGTGTTACATAGGAAAGAAATA 57.129 33.333 0.00 0.00 0.00 1.40
177 178 9.495572 AGGAAAACAAAATTAAACAGTGTCAAA 57.504 25.926 0.00 0.00 0.00 2.69
192 193 9.566432 AACAGTGTCAAATAAGAAATTCTCTCT 57.434 29.630 0.00 0.00 31.02 3.10
193 194 9.566432 ACAGTGTCAAATAAGAAATTCTCTCTT 57.434 29.630 0.00 0.00 37.00 2.85
208 209 9.551734 AAATTCTCTCTTTTCATTTTCCAAAGG 57.448 29.630 0.00 0.00 0.00 3.11
209 210 7.896383 TTCTCTCTTTTCATTTTCCAAAGGA 57.104 32.000 0.00 0.00 0.00 3.36
210 211 8.482852 TTCTCTCTTTTCATTTTCCAAAGGAT 57.517 30.769 0.00 0.00 0.00 3.24
211 212 8.115490 TCTCTCTTTTCATTTTCCAAAGGATC 57.885 34.615 0.00 0.00 0.00 3.36
212 213 7.725397 TCTCTCTTTTCATTTTCCAAAGGATCA 59.275 33.333 0.00 0.00 0.00 2.92
213 214 8.248904 TCTCTTTTCATTTTCCAAAGGATCAA 57.751 30.769 0.00 0.00 0.00 2.57
214 215 8.362639 TCTCTTTTCATTTTCCAAAGGATCAAG 58.637 33.333 0.00 0.00 0.00 3.02
215 216 6.930722 TCTTTTCATTTTCCAAAGGATCAAGC 59.069 34.615 0.00 0.00 0.00 4.01
216 217 5.804944 TTCATTTTCCAAAGGATCAAGCA 57.195 34.783 0.00 0.00 0.00 3.91
217 218 5.804944 TCATTTTCCAAAGGATCAAGCAA 57.195 34.783 0.00 0.00 0.00 3.91
218 219 5.786311 TCATTTTCCAAAGGATCAAGCAAG 58.214 37.500 0.00 0.00 0.00 4.01
219 220 4.605640 TTTTCCAAAGGATCAAGCAAGG 57.394 40.909 0.00 0.00 0.00 3.61
220 221 1.549203 TCCAAAGGATCAAGCAAGGC 58.451 50.000 0.00 0.00 0.00 4.35
221 222 0.171903 CCAAAGGATCAAGCAAGGCG 59.828 55.000 0.00 0.00 0.00 5.52
222 223 0.883833 CAAAGGATCAAGCAAGGCGT 59.116 50.000 0.00 0.00 0.00 5.68
223 224 0.883833 AAAGGATCAAGCAAGGCGTG 59.116 50.000 0.00 0.00 39.24 5.34
224 225 0.250901 AAGGATCAAGCAAGGCGTGT 60.251 50.000 1.69 0.00 38.97 4.49
225 226 0.613260 AGGATCAAGCAAGGCGTGTA 59.387 50.000 1.69 0.00 38.97 2.90
226 227 0.727398 GGATCAAGCAAGGCGTGTAC 59.273 55.000 1.69 0.00 38.97 2.90
227 228 1.438651 GATCAAGCAAGGCGTGTACA 58.561 50.000 1.69 0.00 38.97 2.90
228 229 1.128692 GATCAAGCAAGGCGTGTACAC 59.871 52.381 16.32 16.32 38.97 2.90
229 230 0.105964 TCAAGCAAGGCGTGTACACT 59.894 50.000 23.01 2.25 38.97 3.55
230 231 0.235665 CAAGCAAGGCGTGTACACTG 59.764 55.000 23.01 15.24 33.67 3.66
231 232 0.179056 AAGCAAGGCGTGTACACTGT 60.179 50.000 23.01 5.20 0.00 3.55
232 233 0.677288 AGCAAGGCGTGTACACTGTA 59.323 50.000 23.01 0.00 0.00 2.74
233 234 1.068474 GCAAGGCGTGTACACTGTAG 58.932 55.000 23.01 9.15 0.00 2.74
234 235 1.336517 GCAAGGCGTGTACACTGTAGA 60.337 52.381 23.01 0.00 0.00 2.59
235 236 2.674177 GCAAGGCGTGTACACTGTAGAT 60.674 50.000 23.01 2.65 0.00 1.98
236 237 3.179830 CAAGGCGTGTACACTGTAGATC 58.820 50.000 23.01 5.45 0.00 2.75
237 238 2.443416 AGGCGTGTACACTGTAGATCA 58.557 47.619 23.01 0.00 0.00 2.92
238 239 2.823747 AGGCGTGTACACTGTAGATCAA 59.176 45.455 23.01 0.00 0.00 2.57
239 240 3.257375 AGGCGTGTACACTGTAGATCAAA 59.743 43.478 23.01 0.00 0.00 2.69
240 241 3.367025 GGCGTGTACACTGTAGATCAAAC 59.633 47.826 23.01 0.00 0.00 2.93
241 242 3.985279 GCGTGTACACTGTAGATCAAACA 59.015 43.478 23.01 0.00 0.00 2.83
242 243 4.446385 GCGTGTACACTGTAGATCAAACAA 59.554 41.667 23.01 0.00 0.00 2.83
243 244 5.388475 GCGTGTACACTGTAGATCAAACAAG 60.388 44.000 23.01 3.54 0.00 3.16
244 245 5.690409 CGTGTACACTGTAGATCAAACAAGT 59.310 40.000 23.01 3.79 0.00 3.16
245 246 6.200286 CGTGTACACTGTAGATCAAACAAGTT 59.800 38.462 23.01 0.00 0.00 2.66
246 247 7.564988 GTGTACACTGTAGATCAAACAAGTTC 58.435 38.462 18.92 0.56 0.00 3.01
247 248 5.907197 ACACTGTAGATCAAACAAGTTCG 57.093 39.130 0.00 0.00 0.00 3.95
248 249 4.750098 ACACTGTAGATCAAACAAGTTCGG 59.250 41.667 0.00 0.00 0.00 4.30
249 250 4.750098 CACTGTAGATCAAACAAGTTCGGT 59.250 41.667 0.00 0.00 0.00 4.69
250 251 4.750098 ACTGTAGATCAAACAAGTTCGGTG 59.250 41.667 0.00 0.00 0.00 4.94
251 252 4.951254 TGTAGATCAAACAAGTTCGGTGA 58.049 39.130 0.00 0.00 0.00 4.02
252 253 4.988540 TGTAGATCAAACAAGTTCGGTGAG 59.011 41.667 0.00 0.00 0.00 3.51
253 254 3.403038 AGATCAAACAAGTTCGGTGAGG 58.597 45.455 0.00 0.00 0.00 3.86
254 255 1.961793 TCAAACAAGTTCGGTGAGGG 58.038 50.000 0.00 0.00 0.00 4.30
255 256 0.951558 CAAACAAGTTCGGTGAGGGG 59.048 55.000 0.00 0.00 0.00 4.79
256 257 0.841289 AAACAAGTTCGGTGAGGGGA 59.159 50.000 0.00 0.00 0.00 4.81
257 258 1.064825 AACAAGTTCGGTGAGGGGAT 58.935 50.000 0.00 0.00 0.00 3.85
258 259 0.324943 ACAAGTTCGGTGAGGGGATG 59.675 55.000 0.00 0.00 0.00 3.51
259 260 1.026718 CAAGTTCGGTGAGGGGATGC 61.027 60.000 0.00 0.00 0.00 3.91
260 261 2.124695 GTTCGGTGAGGGGATGCC 60.125 66.667 0.00 0.00 0.00 4.40
261 262 2.285368 TTCGGTGAGGGGATGCCT 60.285 61.111 2.19 0.00 0.00 4.75
262 263 2.367202 TTCGGTGAGGGGATGCCTC 61.367 63.158 2.19 0.00 35.12 4.70
263 264 3.866582 CGGTGAGGGGATGCCTCC 61.867 72.222 2.19 0.00 41.26 4.30
264 265 2.692368 GGTGAGGGGATGCCTCCA 60.692 66.667 10.44 0.00 44.08 3.86
265 266 2.308722 GGTGAGGGGATGCCTCCAA 61.309 63.158 10.44 0.00 44.08 3.53
266 267 1.691219 GTGAGGGGATGCCTCCAAA 59.309 57.895 10.44 0.00 44.08 3.28
267 268 0.394899 GTGAGGGGATGCCTCCAAAG 60.395 60.000 10.44 0.00 44.08 2.77
268 269 1.228510 GAGGGGATGCCTCCAAAGG 59.771 63.158 10.44 0.00 44.08 3.11
269 270 2.280079 GGGGATGCCTCCAAAGGG 59.720 66.667 10.44 0.00 44.08 3.95
277 278 2.204463 TGCCTCCAAAGGGATATGTCA 58.796 47.619 0.00 0.00 43.91 3.58
278 279 2.173356 TGCCTCCAAAGGGATATGTCAG 59.827 50.000 0.00 0.00 43.91 3.51
279 280 2.173569 GCCTCCAAAGGGATATGTCAGT 59.826 50.000 0.00 0.00 43.91 3.41
280 281 3.372025 GCCTCCAAAGGGATATGTCAGTT 60.372 47.826 0.00 0.00 43.91 3.16
281 282 4.141482 GCCTCCAAAGGGATATGTCAGTTA 60.141 45.833 0.00 0.00 43.91 2.24
282 283 5.368989 CCTCCAAAGGGATATGTCAGTTAC 58.631 45.833 0.00 0.00 43.91 2.50
283 284 5.131142 CCTCCAAAGGGATATGTCAGTTACT 59.869 44.000 0.00 0.00 43.91 2.24
284 285 6.235231 TCCAAAGGGATATGTCAGTTACTC 57.765 41.667 0.00 0.00 38.64 2.59
285 286 5.130477 TCCAAAGGGATATGTCAGTTACTCC 59.870 44.000 0.00 0.00 38.64 3.85
286 287 5.368989 CAAAGGGATATGTCAGTTACTCCC 58.631 45.833 0.00 0.00 42.25 4.30
287 288 4.561254 AGGGATATGTCAGTTACTCCCT 57.439 45.455 2.06 2.06 46.20 4.20
288 289 4.875561 GGGATATGTCAGTTACTCCCTC 57.124 50.000 0.00 0.00 39.42 4.30
289 290 3.579151 GGGATATGTCAGTTACTCCCTCC 59.421 52.174 0.00 0.00 39.42 4.30
290 291 3.256136 GGATATGTCAGTTACTCCCTCCG 59.744 52.174 0.00 0.00 0.00 4.63
291 292 2.233305 ATGTCAGTTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
292 293 1.542492 TGTCAGTTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
293 294 0.816373 GTCAGTTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
294 295 0.679002 TCAGTTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
295 296 1.379576 AGTTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
296 297 1.379044 GTTACTCCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
297 298 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
298 299 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
299 300 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
300 301 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
301 302 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
302 303 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
303 304 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
304 305 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
305 306 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
306 307 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
307 308 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
308 309 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
309 310 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
313 314 5.341872 TCCGGAAATACTTGTCGGATAAA 57.658 39.130 0.00 0.00 43.84 1.40
314 315 5.920903 TCCGGAAATACTTGTCGGATAAAT 58.079 37.500 0.00 0.00 43.84 1.40
315 316 5.756347 TCCGGAAATACTTGTCGGATAAATG 59.244 40.000 0.00 0.00 43.84 2.32
316 317 5.049680 CCGGAAATACTTGTCGGATAAATGG 60.050 44.000 0.00 0.00 42.94 3.16
317 318 5.756347 CGGAAATACTTGTCGGATAAATGGA 59.244 40.000 0.00 0.00 0.00 3.41
318 319 6.426937 CGGAAATACTTGTCGGATAAATGGAT 59.573 38.462 0.00 0.00 0.00 3.41
319 320 7.571244 CGGAAATACTTGTCGGATAAATGGATG 60.571 40.741 0.00 0.00 0.00 3.51
320 321 7.228706 GGAAATACTTGTCGGATAAATGGATGT 59.771 37.037 0.00 0.00 0.00 3.06
321 322 9.268268 GAAATACTTGTCGGATAAATGGATGTA 57.732 33.333 0.00 0.00 0.00 2.29
322 323 9.793259 AAATACTTGTCGGATAAATGGATGTAT 57.207 29.630 0.00 0.00 0.00 2.29
323 324 9.436957 AATACTTGTCGGATAAATGGATGTATC 57.563 33.333 0.00 0.00 0.00 2.24
324 325 7.067496 ACTTGTCGGATAAATGGATGTATCT 57.933 36.000 0.00 0.00 0.00 1.98
325 326 6.931281 ACTTGTCGGATAAATGGATGTATCTG 59.069 38.462 0.61 0.61 35.33 2.90
326 327 6.664428 TGTCGGATAAATGGATGTATCTGA 57.336 37.500 4.73 4.73 38.98 3.27
327 328 7.061566 TGTCGGATAAATGGATGTATCTGAA 57.938 36.000 9.16 0.71 41.53 3.02
328 329 6.929049 TGTCGGATAAATGGATGTATCTGAAC 59.071 38.462 9.16 5.94 41.53 3.18
329 330 7.155328 GTCGGATAAATGGATGTATCTGAACT 58.845 38.462 9.16 0.00 41.53 3.01
330 331 7.657761 GTCGGATAAATGGATGTATCTGAACTT 59.342 37.037 9.16 0.00 41.53 2.66
331 332 8.866093 TCGGATAAATGGATGTATCTGAACTTA 58.134 33.333 6.03 0.00 38.56 2.24
332 333 9.658799 CGGATAAATGGATGTATCTGAACTTAT 57.341 33.333 0.73 0.00 35.83 1.73
361 362 8.910351 AGTTCTAGATACATCCATTTTTAGCC 57.090 34.615 0.00 0.00 0.00 3.93
362 363 8.494433 AGTTCTAGATACATCCATTTTTAGCCA 58.506 33.333 0.00 0.00 0.00 4.75
363 364 9.289782 GTTCTAGATACATCCATTTTTAGCCAT 57.710 33.333 0.00 0.00 0.00 4.40
364 365 9.866655 TTCTAGATACATCCATTTTTAGCCATT 57.133 29.630 0.00 0.00 0.00 3.16
365 366 9.866655 TCTAGATACATCCATTTTTAGCCATTT 57.133 29.630 0.00 0.00 0.00 2.32
367 368 8.773033 AGATACATCCATTTTTAGCCATTTCT 57.227 30.769 0.00 0.00 0.00 2.52
368 369 8.636213 AGATACATCCATTTTTAGCCATTTCTG 58.364 33.333 0.00 0.00 0.00 3.02
369 370 5.422145 ACATCCATTTTTAGCCATTTCTGC 58.578 37.500 0.00 0.00 0.00 4.26
370 371 4.108699 TCCATTTTTAGCCATTTCTGCG 57.891 40.909 0.00 0.00 0.00 5.18
371 372 3.761218 TCCATTTTTAGCCATTTCTGCGA 59.239 39.130 0.00 0.00 0.00 5.10
372 373 3.859386 CCATTTTTAGCCATTTCTGCGAC 59.141 43.478 0.00 0.00 0.00 5.19
373 374 4.484236 CATTTTTAGCCATTTCTGCGACA 58.516 39.130 0.00 0.00 0.00 4.35
374 375 3.552604 TTTTAGCCATTTCTGCGACAC 57.447 42.857 0.00 0.00 0.00 3.67
375 376 1.075542 TTAGCCATTTCTGCGACACG 58.924 50.000 0.00 0.00 0.00 4.49
376 377 0.037697 TAGCCATTTCTGCGACACGT 60.038 50.000 0.00 0.00 0.00 4.49
377 378 0.037697 AGCCATTTCTGCGACACGTA 60.038 50.000 0.00 0.00 0.00 3.57
378 379 0.793861 GCCATTTCTGCGACACGTAA 59.206 50.000 0.00 0.00 0.00 3.18
379 380 1.396996 GCCATTTCTGCGACACGTAAT 59.603 47.619 0.00 0.00 0.00 1.89
380 381 2.159572 GCCATTTCTGCGACACGTAATT 60.160 45.455 0.00 0.00 0.00 1.40
381 382 3.669557 GCCATTTCTGCGACACGTAATTT 60.670 43.478 0.00 0.00 0.00 1.82
382 383 4.088648 CCATTTCTGCGACACGTAATTTC 58.911 43.478 0.00 0.00 0.00 2.17
383 384 4.377943 CCATTTCTGCGACACGTAATTTCA 60.378 41.667 0.00 0.00 0.00 2.69
384 385 4.383774 TTTCTGCGACACGTAATTTCAG 57.616 40.909 0.00 0.00 0.00 3.02
385 386 3.291809 TCTGCGACACGTAATTTCAGA 57.708 42.857 0.00 0.00 0.00 3.27
386 387 2.984471 TCTGCGACACGTAATTTCAGAC 59.016 45.455 0.00 0.00 0.00 3.51
387 388 1.717113 TGCGACACGTAATTTCAGACG 59.283 47.619 0.00 0.00 44.57 4.18
388 389 1.058695 GCGACACGTAATTTCAGACGG 59.941 52.381 3.74 0.00 43.32 4.79
389 390 2.587956 CGACACGTAATTTCAGACGGA 58.412 47.619 3.74 0.00 43.32 4.69
390 391 2.592897 CGACACGTAATTTCAGACGGAG 59.407 50.000 3.74 0.00 43.32 4.63
391 392 2.921754 GACACGTAATTTCAGACGGAGG 59.078 50.000 3.74 0.00 43.32 4.30
392 393 2.268298 CACGTAATTTCAGACGGAGGG 58.732 52.381 3.74 0.00 43.32 4.30
393 394 2.094390 CACGTAATTTCAGACGGAGGGA 60.094 50.000 3.74 0.00 43.32 4.20
394 395 2.165845 ACGTAATTTCAGACGGAGGGAG 59.834 50.000 3.74 0.00 43.32 4.30
397 398 4.142315 CGTAATTTCAGACGGAGGGAGTAA 60.142 45.833 0.00 0.00 35.43 2.24
419 420 2.993937 TGTTAAGGGTAAAGGGATGCG 58.006 47.619 0.00 0.00 0.00 4.73
459 460 0.804989 GGGTTTGGACATCGCTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
549 550 2.907042 AGGAGGATGTCGTCTTTCCTTT 59.093 45.455 10.92 0.00 37.51 3.11
552 553 2.907042 AGGATGTCGTCTTTCCTTTCCT 59.093 45.455 0.38 0.00 0.00 3.36
559 560 0.889186 TCTTTCCTTTCCTGTGGCGC 60.889 55.000 0.00 0.00 0.00 6.53
560 561 1.152860 TTTCCTTTCCTGTGGCGCA 60.153 52.632 10.83 0.00 0.00 6.09
607 608 1.280746 CACGCCAAAGTGAGCACTG 59.719 57.895 3.57 0.00 44.43 3.66
610 611 2.924105 GCCAAAGTGAGCACTGGCC 61.924 63.158 18.12 0.00 43.11 5.36
611 612 2.270986 CCAAAGTGAGCACTGGCCC 61.271 63.158 0.00 0.00 41.58 5.80
612 613 1.228367 CAAAGTGAGCACTGGCCCT 60.228 57.895 0.00 0.00 41.58 5.19
613 614 1.073897 AAAGTGAGCACTGGCCCTC 59.926 57.895 0.00 0.00 41.58 4.30
614 615 2.417558 AAAGTGAGCACTGGCCCTCC 62.418 60.000 0.00 0.00 41.58 4.30
615 616 3.640407 GTGAGCACTGGCCCTCCA 61.640 66.667 0.00 0.00 42.56 3.86
724 726 2.368875 CCCTGCCGATAGTGATAGGTTT 59.631 50.000 0.00 0.00 30.73 3.27
740 742 6.756074 TGATAGGTTTGCAAAAGAAAGTGTTG 59.244 34.615 14.67 0.00 0.00 3.33
753 755 3.632107 TGTTGCGTTCGGTGCGTC 61.632 61.111 0.00 0.00 34.24 5.19
766 768 4.036352 TCGGTGCGTCAAAACATTTTTAC 58.964 39.130 0.00 0.00 0.00 2.01
771 773 6.200097 GGTGCGTCAAAACATTTTTACTTCAT 59.800 34.615 1.24 0.00 0.00 2.57
774 776 6.419413 GCGTCAAAACATTTTTACTTCATCCA 59.581 34.615 1.24 0.00 0.00 3.41
775 777 7.358352 GCGTCAAAACATTTTTACTTCATCCAG 60.358 37.037 1.24 0.00 0.00 3.86
780 782 6.683974 ACATTTTTACTTCATCCAGATCGG 57.316 37.500 0.00 0.00 0.00 4.18
803 805 6.221659 GGTAGTAGAACAACTTGCAACTACT 58.778 40.000 21.69 21.69 41.73 2.57
857 859 8.485976 AATTTCAAGATCGGTAGAAGAAGAAG 57.514 34.615 0.00 0.00 0.00 2.85
859 861 6.835819 TCAAGATCGGTAGAAGAAGAAGAA 57.164 37.500 0.00 0.00 0.00 2.52
861 863 6.434652 TCAAGATCGGTAGAAGAAGAAGAACT 59.565 38.462 0.00 0.00 0.00 3.01
878 880 0.250166 ACTTGCAACTACCACCGGAC 60.250 55.000 9.46 0.00 0.00 4.79
880 882 2.030490 TTGCAACTACCACCGGACGT 62.030 55.000 9.46 5.84 0.00 4.34
882 884 0.038343 GCAACTACCACCGGACGTAA 60.038 55.000 9.46 0.00 0.00 3.18
894 896 2.031683 CCGGACGTAATTGAATGCCTTC 59.968 50.000 0.00 0.00 0.00 3.46
949 952 2.103042 GTGCATCAGCCAGGTCGTC 61.103 63.158 0.00 0.00 41.13 4.20
950 953 2.285773 TGCATCAGCCAGGTCGTCT 61.286 57.895 0.00 0.00 41.13 4.18
951 954 1.812922 GCATCAGCCAGGTCGTCTG 60.813 63.158 0.00 2.39 43.00 3.51
952 955 1.812922 CATCAGCCAGGTCGTCTGC 60.813 63.158 3.61 0.00 42.05 4.26
953 956 3.023949 ATCAGCCAGGTCGTCTGCC 62.024 63.158 3.61 0.00 42.05 4.85
954 957 4.007644 CAGCCAGGTCGTCTGCCA 62.008 66.667 3.61 0.00 42.05 4.92
962 965 4.314440 TCGTCTGCCACTGCCACC 62.314 66.667 0.00 0.00 36.33 4.61
977 980 6.169094 CACTGCCACCCTTATATAAGATCAG 58.831 44.000 21.75 19.18 35.33 2.90
1055 1095 0.901124 CACCTAGCAGTCAAGGAGCT 59.099 55.000 0.00 0.00 42.14 4.09
1056 1096 2.103373 CACCTAGCAGTCAAGGAGCTA 58.897 52.381 0.00 0.00 39.68 3.32
1121 1164 2.265739 CCGCTGCTGCACTTCCTA 59.734 61.111 16.29 0.00 39.64 2.94
1232 1317 2.280592 AACAACTCCACCGTCGCC 60.281 61.111 0.00 0.00 0.00 5.54
1263 1354 1.347817 GCAGAGCGAGACGTCCAAAG 61.348 60.000 13.01 2.28 0.00 2.77
1266 1357 2.357034 GCGAGACGTCCAAAGCCA 60.357 61.111 13.01 0.00 0.00 4.75
1353 1444 1.136891 AGTTCCAGGTTTGCACTTTGC 59.863 47.619 0.00 0.00 45.29 3.68
1368 1459 6.197788 GCACTTTGCACTTTGTTATTACAC 57.802 37.500 0.00 0.00 44.26 2.90
1370 1461 7.136119 GCACTTTGCACTTTGTTATTACACTA 58.864 34.615 0.00 0.00 44.26 2.74
1371 1462 7.646130 GCACTTTGCACTTTGTTATTACACTAA 59.354 33.333 0.00 0.00 44.26 2.24
1641 1792 4.838486 GACCTCGTCCGCTCGCTG 62.838 72.222 0.00 0.00 0.00 5.18
1914 3047 4.960866 ACCGTCCCCGTTTTGCCC 62.961 66.667 0.00 0.00 0.00 5.36
1929 3062 5.182380 CGTTTTGCCCCAGAAAATACTTCTA 59.818 40.000 0.00 0.00 0.00 2.10
1962 3095 4.905866 CACAACGACAACATCTTCAACATC 59.094 41.667 0.00 0.00 0.00 3.06
1971 3104 0.243636 TCTTCAACATCGAGCTCGCA 59.756 50.000 30.97 19.58 39.60 5.10
1995 3128 3.764434 AGACGATGAAAGAGTAAGCTCCA 59.236 43.478 0.00 0.00 42.59 3.86
2240 3414 9.424319 TCTGCAAATTAATTAGTAGATCGATCC 57.576 33.333 21.66 7.65 0.00 3.36
2331 3507 4.634004 TGATTGTTTGCCCGTACAAGATAG 59.366 41.667 0.00 0.00 37.64 2.08
2373 3556 3.736224 CCATGGAGGGCAGCACCT 61.736 66.667 5.56 2.25 45.57 4.00
2385 3568 0.877071 CAGCACCTCGCAATTTGTCT 59.123 50.000 0.00 0.00 46.13 3.41
2386 3569 2.076100 CAGCACCTCGCAATTTGTCTA 58.924 47.619 0.00 0.00 46.13 2.59
2387 3570 2.094894 CAGCACCTCGCAATTTGTCTAG 59.905 50.000 0.00 0.00 46.13 2.43
2426 3609 8.408601 GCATCTCACCATTTTCATAAGTACATT 58.591 33.333 0.00 0.00 0.00 2.71
2457 3649 3.295093 TGCTTCAAAATGGACAGTGGAA 58.705 40.909 0.00 0.00 0.00 3.53
2496 3688 6.607600 GCATCTCTAACCCTTCCCTTTAAAAT 59.392 38.462 0.00 0.00 0.00 1.82
2576 3770 5.454966 AGTACCAACCATTTCTCCAAAACT 58.545 37.500 0.00 0.00 0.00 2.66
2661 3855 4.448976 GAAAGCAGCCCCTCCCCC 62.449 72.222 0.00 0.00 0.00 5.40
2705 3899 4.544689 CGCGCGACTGAGAGGGAG 62.545 72.222 28.94 0.00 0.00 4.30
2748 3942 1.151908 CCCTACTCTCCTCCTCCCG 59.848 68.421 0.00 0.00 0.00 5.14
2813 4007 2.994990 CGGTGTCGGGTTTCTTTCA 58.005 52.632 0.00 0.00 0.00 2.69
2821 4015 2.491675 GGGTTTCTTTCATCTCCCGT 57.508 50.000 0.00 0.00 0.00 5.28
2822 4016 2.084546 GGGTTTCTTTCATCTCCCGTG 58.915 52.381 0.00 0.00 0.00 4.94
2823 4017 1.468914 GGTTTCTTTCATCTCCCGTGC 59.531 52.381 0.00 0.00 0.00 5.34
2824 4018 2.151202 GTTTCTTTCATCTCCCGTGCA 58.849 47.619 0.00 0.00 0.00 4.57
2825 4019 1.808411 TTCTTTCATCTCCCGTGCAC 58.192 50.000 6.82 6.82 0.00 4.57
2826 4020 0.036388 TCTTTCATCTCCCGTGCACC 60.036 55.000 12.15 0.00 0.00 5.01
2827 4021 1.002624 TTTCATCTCCCGTGCACCC 60.003 57.895 12.15 0.00 0.00 4.61
2847 4042 3.664025 CTTCAGCGCGGGATGTGGA 62.664 63.158 17.62 4.56 0.00 4.02
2967 4171 2.934932 TGCAGGTCAGGGATGGCA 60.935 61.111 0.00 0.00 0.00 4.92
2972 4176 2.903855 GTCAGGGATGGCATGGCG 60.904 66.667 15.27 0.00 0.00 5.69
2988 4192 3.966104 CGGCGGCGCTCAGATCTA 61.966 66.667 32.30 0.00 0.00 1.98
2992 4196 1.791103 GCGGCGCTCAGATCTAGTCT 61.791 60.000 26.86 0.00 37.80 3.24
3001 4205 1.840737 AGATCTAGTCTGCACACGGT 58.159 50.000 0.00 0.00 35.31 4.83
3083 4287 4.996434 GTGGCGGCACTGCAGTCT 62.996 66.667 32.54 0.00 36.28 3.24
3089 4293 2.641559 GCACTGCAGTCTTGGTGC 59.358 61.111 18.64 13.77 45.93 5.01
3090 4294 2.941333 CACTGCAGTCTTGGTGCG 59.059 61.111 18.64 0.00 44.35 5.34
3091 4295 1.595109 CACTGCAGTCTTGGTGCGA 60.595 57.895 18.64 0.00 44.35 5.10
3092 4296 1.595382 ACTGCAGTCTTGGTGCGAC 60.595 57.895 15.25 0.00 44.35 5.19
3099 4303 2.594303 CTTGGTGCGACAGGCCAA 60.594 61.111 5.01 0.00 42.61 4.52
3132 4684 2.124487 CGACGCTCCTCCTCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
3133 4685 2.184167 CGACGCTCCTCCTCCTCTC 61.184 68.421 0.00 0.00 0.00 3.20
3143 4695 0.340208 TCCTCCTCTCCCTTTCCTCC 59.660 60.000 0.00 0.00 0.00 4.30
3148 4700 1.557371 CCTCTCCCTTTCCTCCTGTTC 59.443 57.143 0.00 0.00 0.00 3.18
3150 4702 0.977395 CTCCCTTTCCTCCTGTTCGT 59.023 55.000 0.00 0.00 0.00 3.85
3205 4757 3.248171 GATCGCGTCACCTGTCGC 61.248 66.667 5.77 6.82 46.08 5.19
3245 4819 1.498176 CCCTTTCTCCCCCGTTCCTT 61.498 60.000 0.00 0.00 0.00 3.36
3247 4821 0.690762 CTTTCTCCCCCGTTCCTTGA 59.309 55.000 0.00 0.00 0.00 3.02
3255 4829 4.675029 CGTTCCTTGACCGCGGGT 62.675 66.667 31.76 15.52 39.44 5.28
3261 4835 3.240011 TTGACCGCGGGTGGGTTA 61.240 61.111 31.76 0.60 38.07 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.354673 CCCTCATATGGTATGTGACTAAAATTT 57.645 33.333 2.13 0.00 0.00 1.82
2 3 7.944554 CCCCTCATATGGTATGTGACTAAAATT 59.055 37.037 2.13 0.00 0.00 1.82
3 4 7.461749 CCCCTCATATGGTATGTGACTAAAAT 58.538 38.462 2.13 0.00 0.00 1.82
4 5 6.690460 GCCCCTCATATGGTATGTGACTAAAA 60.690 42.308 2.13 0.00 0.00 1.52
5 6 5.221843 GCCCCTCATATGGTATGTGACTAAA 60.222 44.000 2.13 0.00 0.00 1.85
6 7 4.286032 GCCCCTCATATGGTATGTGACTAA 59.714 45.833 2.13 0.00 0.00 2.24
7 8 3.838317 GCCCCTCATATGGTATGTGACTA 59.162 47.826 2.13 0.00 0.00 2.59
8 9 2.639839 GCCCCTCATATGGTATGTGACT 59.360 50.000 2.13 0.00 0.00 3.41
9 10 2.371841 TGCCCCTCATATGGTATGTGAC 59.628 50.000 2.13 0.00 0.00 3.67
10 11 2.700354 TGCCCCTCATATGGTATGTGA 58.300 47.619 2.13 0.00 0.00 3.58
11 12 3.507162 TTGCCCCTCATATGGTATGTG 57.493 47.619 2.13 0.00 0.00 3.21
12 13 4.534647 TTTTGCCCCTCATATGGTATGT 57.465 40.909 2.13 0.00 0.00 2.29
33 34 9.797556 GTGTTTAATGACACCTAAAAAGACTTT 57.202 29.630 0.00 0.00 43.16 2.66
47 48 3.502979 GGCCTTAACGGTGTTTAATGACA 59.497 43.478 0.00 0.00 34.25 3.58
48 49 3.119743 GGGCCTTAACGGTGTTTAATGAC 60.120 47.826 0.84 0.00 34.25 3.06
49 50 3.083293 GGGCCTTAACGGTGTTTAATGA 58.917 45.455 0.84 0.00 34.25 2.57
50 51 2.820787 TGGGCCTTAACGGTGTTTAATG 59.179 45.455 4.53 0.00 34.25 1.90
51 52 3.157750 TGGGCCTTAACGGTGTTTAAT 57.842 42.857 4.53 0.00 34.25 1.40
52 53 2.653234 TGGGCCTTAACGGTGTTTAA 57.347 45.000 4.53 0.00 34.25 1.52
53 54 2.653234 TTGGGCCTTAACGGTGTTTA 57.347 45.000 4.53 0.00 34.25 2.01
54 55 1.777941 TTTGGGCCTTAACGGTGTTT 58.222 45.000 4.53 0.00 34.25 2.83
55 56 1.777941 TTTTGGGCCTTAACGGTGTT 58.222 45.000 4.53 0.00 34.25 3.32
56 57 1.616374 CATTTTGGGCCTTAACGGTGT 59.384 47.619 4.53 0.00 34.25 4.16
57 58 1.067213 CCATTTTGGGCCTTAACGGTG 60.067 52.381 4.53 0.00 32.67 4.94
58 59 1.203075 TCCATTTTGGGCCTTAACGGT 60.203 47.619 4.53 0.00 38.32 4.83
59 60 1.551452 TCCATTTTGGGCCTTAACGG 58.449 50.000 4.53 0.59 38.32 4.44
60 61 2.757868 TCATCCATTTTGGGCCTTAACG 59.242 45.455 4.53 0.00 38.32 3.18
61 62 4.383010 CCTTCATCCATTTTGGGCCTTAAC 60.383 45.833 4.53 0.00 38.32 2.01
62 63 3.774216 CCTTCATCCATTTTGGGCCTTAA 59.226 43.478 4.53 0.00 38.32 1.85
63 64 3.245948 ACCTTCATCCATTTTGGGCCTTA 60.246 43.478 4.53 0.00 38.32 2.69
64 65 2.190538 CCTTCATCCATTTTGGGCCTT 58.809 47.619 4.53 0.00 38.32 4.35
65 66 1.079323 ACCTTCATCCATTTTGGGCCT 59.921 47.619 4.53 0.00 38.32 5.19
66 67 1.207811 CACCTTCATCCATTTTGGGCC 59.792 52.381 0.00 0.00 38.32 5.80
67 68 1.901833 ACACCTTCATCCATTTTGGGC 59.098 47.619 0.00 0.00 38.32 5.36
68 69 3.164268 TGACACCTTCATCCATTTTGGG 58.836 45.455 0.00 0.00 38.32 4.12
69 70 6.528537 TTATGACACCTTCATCCATTTTGG 57.471 37.500 0.00 0.00 41.53 3.28
70 71 7.546667 CCTTTTATGACACCTTCATCCATTTTG 59.453 37.037 0.00 0.00 41.53 2.44
71 72 7.614494 CCTTTTATGACACCTTCATCCATTTT 58.386 34.615 0.00 0.00 41.53 1.82
72 73 6.351286 GCCTTTTATGACACCTTCATCCATTT 60.351 38.462 0.00 0.00 41.53 2.32
73 74 5.127682 GCCTTTTATGACACCTTCATCCATT 59.872 40.000 0.00 0.00 41.53 3.16
74 75 4.646492 GCCTTTTATGACACCTTCATCCAT 59.354 41.667 0.00 0.00 41.53 3.41
75 76 4.016444 GCCTTTTATGACACCTTCATCCA 58.984 43.478 0.00 0.00 41.53 3.41
76 77 4.016444 TGCCTTTTATGACACCTTCATCC 58.984 43.478 0.00 0.00 41.53 3.51
77 78 5.841957 ATGCCTTTTATGACACCTTCATC 57.158 39.130 0.00 0.00 41.53 2.92
79 80 7.716799 ATTTATGCCTTTTATGACACCTTCA 57.283 32.000 0.00 0.00 39.11 3.02
80 81 9.435688 AAAATTTATGCCTTTTATGACACCTTC 57.564 29.630 0.00 0.00 0.00 3.46
81 82 9.218440 CAAAATTTATGCCTTTTATGACACCTT 57.782 29.630 0.00 0.00 0.00 3.50
82 83 7.823799 CCAAAATTTATGCCTTTTATGACACCT 59.176 33.333 0.00 0.00 0.00 4.00
83 84 7.821846 TCCAAAATTTATGCCTTTTATGACACC 59.178 33.333 0.00 0.00 0.00 4.16
84 85 8.655970 GTCCAAAATTTATGCCTTTTATGACAC 58.344 33.333 0.00 0.00 31.88 3.67
85 86 8.592809 AGTCCAAAATTTATGCCTTTTATGACA 58.407 29.630 0.00 0.00 32.87 3.58
86 87 9.087424 GAGTCCAAAATTTATGCCTTTTATGAC 57.913 33.333 0.00 0.00 31.80 3.06
87 88 8.811017 TGAGTCCAAAATTTATGCCTTTTATGA 58.189 29.630 0.00 0.00 0.00 2.15
88 89 9.090692 CTGAGTCCAAAATTTATGCCTTTTATG 57.909 33.333 0.00 0.00 0.00 1.90
89 90 8.815912 ACTGAGTCCAAAATTTATGCCTTTTAT 58.184 29.630 0.00 0.00 0.00 1.40
90 91 8.087750 CACTGAGTCCAAAATTTATGCCTTTTA 58.912 33.333 0.00 0.00 0.00 1.52
91 92 6.930722 CACTGAGTCCAAAATTTATGCCTTTT 59.069 34.615 0.00 0.00 0.00 2.27
92 93 6.041979 ACACTGAGTCCAAAATTTATGCCTTT 59.958 34.615 0.00 0.00 0.00 3.11
93 94 5.539955 ACACTGAGTCCAAAATTTATGCCTT 59.460 36.000 0.00 0.00 0.00 4.35
94 95 5.079643 ACACTGAGTCCAAAATTTATGCCT 58.920 37.500 0.00 0.00 0.00 4.75
95 96 5.391312 ACACTGAGTCCAAAATTTATGCC 57.609 39.130 0.00 0.00 0.00 4.40
96 97 7.367285 TGTAACACTGAGTCCAAAATTTATGC 58.633 34.615 0.00 0.00 0.00 3.14
99 100 9.226606 CCTATGTAACACTGAGTCCAAAATTTA 57.773 33.333 0.00 0.00 0.00 1.40
100 101 7.942341 TCCTATGTAACACTGAGTCCAAAATTT 59.058 33.333 0.00 0.00 0.00 1.82
101 102 7.458397 TCCTATGTAACACTGAGTCCAAAATT 58.542 34.615 0.00 0.00 0.00 1.82
102 103 7.016153 TCCTATGTAACACTGAGTCCAAAAT 57.984 36.000 0.00 0.00 0.00 1.82
103 104 6.428083 TCCTATGTAACACTGAGTCCAAAA 57.572 37.500 0.00 0.00 0.00 2.44
104 105 6.428083 TTCCTATGTAACACTGAGTCCAAA 57.572 37.500 0.00 0.00 0.00 3.28
105 106 6.269077 TCTTTCCTATGTAACACTGAGTCCAA 59.731 38.462 0.00 0.00 0.00 3.53
106 107 5.778241 TCTTTCCTATGTAACACTGAGTCCA 59.222 40.000 0.00 0.00 0.00 4.02
107 108 6.282199 TCTTTCCTATGTAACACTGAGTCC 57.718 41.667 0.00 0.00 0.00 3.85
108 109 8.779354 ATTTCTTTCCTATGTAACACTGAGTC 57.221 34.615 0.00 0.00 0.00 3.36
151 152 9.495572 TTTGACACTGTTTAATTTTGTTTTCCT 57.504 25.926 0.00 0.00 0.00 3.36
166 167 9.566432 AGAGAGAATTTCTTATTTGACACTGTT 57.434 29.630 0.00 0.00 35.87 3.16
167 168 9.566432 AAGAGAGAATTTCTTATTTGACACTGT 57.434 29.630 0.00 0.00 35.87 3.55
182 183 9.551734 CCTTTGGAAAATGAAAAGAGAGAATTT 57.448 29.630 0.00 0.00 33.63 1.82
183 184 8.927411 TCCTTTGGAAAATGAAAAGAGAGAATT 58.073 29.630 0.00 0.00 33.63 2.17
184 185 8.482852 TCCTTTGGAAAATGAAAAGAGAGAAT 57.517 30.769 0.00 0.00 33.63 2.40
185 186 7.896383 TCCTTTGGAAAATGAAAAGAGAGAA 57.104 32.000 0.00 0.00 33.63 2.87
186 187 7.725397 TGATCCTTTGGAAAATGAAAAGAGAGA 59.275 33.333 0.00 0.00 34.34 3.10
187 188 7.889469 TGATCCTTTGGAAAATGAAAAGAGAG 58.111 34.615 0.00 0.00 34.34 3.20
188 189 7.838079 TGATCCTTTGGAAAATGAAAAGAGA 57.162 32.000 0.00 0.00 34.34 3.10
189 190 7.117379 GCTTGATCCTTTGGAAAATGAAAAGAG 59.883 37.037 0.00 0.00 34.34 2.85
190 191 6.930722 GCTTGATCCTTTGGAAAATGAAAAGA 59.069 34.615 0.00 0.00 34.34 2.52
191 192 6.707161 TGCTTGATCCTTTGGAAAATGAAAAG 59.293 34.615 0.00 0.00 34.34 2.27
192 193 6.590068 TGCTTGATCCTTTGGAAAATGAAAA 58.410 32.000 0.00 0.00 34.34 2.29
193 194 6.172136 TGCTTGATCCTTTGGAAAATGAAA 57.828 33.333 0.00 0.00 34.34 2.69
194 195 5.804944 TGCTTGATCCTTTGGAAAATGAA 57.195 34.783 0.00 0.00 34.34 2.57
195 196 5.279607 CCTTGCTTGATCCTTTGGAAAATGA 60.280 40.000 0.00 0.00 34.34 2.57
196 197 4.933400 CCTTGCTTGATCCTTTGGAAAATG 59.067 41.667 0.00 0.00 34.34 2.32
197 198 4.564199 GCCTTGCTTGATCCTTTGGAAAAT 60.564 41.667 0.00 0.00 34.34 1.82
198 199 3.244181 GCCTTGCTTGATCCTTTGGAAAA 60.244 43.478 0.00 0.00 34.34 2.29
199 200 2.299867 GCCTTGCTTGATCCTTTGGAAA 59.700 45.455 0.00 0.00 34.34 3.13
200 201 1.895131 GCCTTGCTTGATCCTTTGGAA 59.105 47.619 0.00 0.00 34.34 3.53
201 202 1.549203 GCCTTGCTTGATCCTTTGGA 58.451 50.000 0.00 0.00 35.55 3.53
202 203 0.171903 CGCCTTGCTTGATCCTTTGG 59.828 55.000 0.00 0.00 0.00 3.28
203 204 0.883833 ACGCCTTGCTTGATCCTTTG 59.116 50.000 0.00 0.00 0.00 2.77
204 205 0.883833 CACGCCTTGCTTGATCCTTT 59.116 50.000 0.00 0.00 28.94 3.11
205 206 0.250901 ACACGCCTTGCTTGATCCTT 60.251 50.000 0.00 0.00 32.11 3.36
206 207 0.613260 TACACGCCTTGCTTGATCCT 59.387 50.000 0.00 0.00 32.11 3.24
207 208 0.727398 GTACACGCCTTGCTTGATCC 59.273 55.000 0.00 0.00 32.11 3.36
208 209 1.128692 GTGTACACGCCTTGCTTGATC 59.871 52.381 10.84 0.00 32.11 2.92
209 210 1.156736 GTGTACACGCCTTGCTTGAT 58.843 50.000 10.84 0.00 32.11 2.57
210 211 0.105964 AGTGTACACGCCTTGCTTGA 59.894 50.000 19.93 0.00 36.20 3.02
211 212 0.235665 CAGTGTACACGCCTTGCTTG 59.764 55.000 19.93 6.78 36.20 4.01
212 213 0.179056 ACAGTGTACACGCCTTGCTT 60.179 50.000 19.93 0.00 36.20 3.91
213 214 0.677288 TACAGTGTACACGCCTTGCT 59.323 50.000 19.93 6.78 36.20 3.91
214 215 1.068474 CTACAGTGTACACGCCTTGC 58.932 55.000 19.93 0.00 36.20 4.01
215 216 2.717580 TCTACAGTGTACACGCCTTG 57.282 50.000 19.93 14.79 36.20 3.61
216 217 2.823747 TGATCTACAGTGTACACGCCTT 59.176 45.455 19.93 8.39 36.20 4.35
217 218 2.443416 TGATCTACAGTGTACACGCCT 58.557 47.619 19.93 9.04 36.20 5.52
218 219 2.933495 TGATCTACAGTGTACACGCC 57.067 50.000 19.93 6.39 36.20 5.68
219 220 3.985279 TGTTTGATCTACAGTGTACACGC 59.015 43.478 19.93 0.00 36.20 5.34
220 221 5.690409 ACTTGTTTGATCTACAGTGTACACG 59.310 40.000 19.93 16.45 36.20 4.49
221 222 7.478520 AACTTGTTTGATCTACAGTGTACAC 57.521 36.000 18.56 18.56 0.00 2.90
222 223 6.419710 CGAACTTGTTTGATCTACAGTGTACA 59.580 38.462 0.00 0.00 0.00 2.90
223 224 6.128902 CCGAACTTGTTTGATCTACAGTGTAC 60.129 42.308 0.00 0.00 0.00 2.90
224 225 5.924254 CCGAACTTGTTTGATCTACAGTGTA 59.076 40.000 2.36 2.36 0.00 2.90
225 226 4.750098 CCGAACTTGTTTGATCTACAGTGT 59.250 41.667 0.00 0.00 0.00 3.55
226 227 4.750098 ACCGAACTTGTTTGATCTACAGTG 59.250 41.667 2.52 0.00 0.00 3.66
227 228 4.750098 CACCGAACTTGTTTGATCTACAGT 59.250 41.667 2.52 0.00 0.00 3.55
228 229 4.988540 TCACCGAACTTGTTTGATCTACAG 59.011 41.667 2.52 0.00 0.00 2.74
229 230 4.951254 TCACCGAACTTGTTTGATCTACA 58.049 39.130 2.52 0.00 0.00 2.74
230 231 4.389077 CCTCACCGAACTTGTTTGATCTAC 59.611 45.833 2.52 0.00 0.00 2.59
231 232 4.562757 CCCTCACCGAACTTGTTTGATCTA 60.563 45.833 2.52 0.00 0.00 1.98
232 233 3.403038 CCTCACCGAACTTGTTTGATCT 58.597 45.455 2.52 0.00 0.00 2.75
233 234 2.484264 CCCTCACCGAACTTGTTTGATC 59.516 50.000 2.52 0.00 0.00 2.92
234 235 2.504367 CCCTCACCGAACTTGTTTGAT 58.496 47.619 2.52 0.00 0.00 2.57
235 236 1.476110 CCCCTCACCGAACTTGTTTGA 60.476 52.381 2.52 0.00 0.00 2.69
236 237 0.951558 CCCCTCACCGAACTTGTTTG 59.048 55.000 0.00 0.00 0.00 2.93
237 238 0.841289 TCCCCTCACCGAACTTGTTT 59.159 50.000 0.00 0.00 0.00 2.83
238 239 1.064825 ATCCCCTCACCGAACTTGTT 58.935 50.000 0.00 0.00 0.00 2.83
239 240 0.324943 CATCCCCTCACCGAACTTGT 59.675 55.000 0.00 0.00 0.00 3.16
240 241 1.026718 GCATCCCCTCACCGAACTTG 61.027 60.000 0.00 0.00 0.00 3.16
241 242 1.299976 GCATCCCCTCACCGAACTT 59.700 57.895 0.00 0.00 0.00 2.66
242 243 2.670148 GGCATCCCCTCACCGAACT 61.670 63.158 0.00 0.00 0.00 3.01
243 244 2.124695 GGCATCCCCTCACCGAAC 60.125 66.667 0.00 0.00 0.00 3.95
244 245 2.285368 AGGCATCCCCTCACCGAA 60.285 61.111 0.00 0.00 41.21 4.30
252 253 1.659035 ATCCCTTTGGAGGCATCCCC 61.659 60.000 16.13 0.00 46.08 4.81
253 254 1.149101 TATCCCTTTGGAGGCATCCC 58.851 55.000 16.13 0.00 46.08 3.85
254 255 2.108952 ACATATCCCTTTGGAGGCATCC 59.891 50.000 11.34 11.34 46.08 3.51
255 256 3.181440 TGACATATCCCTTTGGAGGCATC 60.181 47.826 0.00 0.00 46.08 3.91
256 257 2.785269 TGACATATCCCTTTGGAGGCAT 59.215 45.455 0.00 0.00 46.08 4.40
257 258 2.173356 CTGACATATCCCTTTGGAGGCA 59.827 50.000 0.00 0.00 46.08 4.75
258 259 2.173569 ACTGACATATCCCTTTGGAGGC 59.826 50.000 0.00 0.00 46.08 4.70
259 260 4.510167 AACTGACATATCCCTTTGGAGG 57.490 45.455 0.00 0.00 46.08 4.30
260 261 6.240549 AGTAACTGACATATCCCTTTGGAG 57.759 41.667 0.00 0.00 46.08 3.86
262 263 5.368989 GGAGTAACTGACATATCCCTTTGG 58.631 45.833 0.00 0.00 0.00 3.28
263 264 5.368989 GGGAGTAACTGACATATCCCTTTG 58.631 45.833 0.73 0.00 42.64 2.77
264 265 5.632034 GGGAGTAACTGACATATCCCTTT 57.368 43.478 0.73 0.00 42.64 3.11
267 268 3.579151 GGAGGGAGTAACTGACATATCCC 59.421 52.174 0.00 0.00 45.67 3.85
268 269 3.256136 CGGAGGGAGTAACTGACATATCC 59.744 52.174 0.00 0.00 0.00 2.59
269 270 3.890147 ACGGAGGGAGTAACTGACATATC 59.110 47.826 0.00 0.00 0.00 1.63
270 271 3.890147 GACGGAGGGAGTAACTGACATAT 59.110 47.826 0.00 0.00 0.00 1.78
271 272 3.285484 GACGGAGGGAGTAACTGACATA 58.715 50.000 0.00 0.00 0.00 2.29
272 273 2.100989 GACGGAGGGAGTAACTGACAT 58.899 52.381 0.00 0.00 0.00 3.06
273 274 1.542492 GACGGAGGGAGTAACTGACA 58.458 55.000 0.00 0.00 0.00 3.58
274 275 0.816373 GGACGGAGGGAGTAACTGAC 59.184 60.000 0.00 0.00 0.00 3.51
275 276 0.679002 CGGACGGAGGGAGTAACTGA 60.679 60.000 0.00 0.00 0.00 3.41
276 277 1.664321 CCGGACGGAGGGAGTAACTG 61.664 65.000 4.40 0.00 37.50 3.16
277 278 1.379576 CCGGACGGAGGGAGTAACT 60.380 63.158 4.40 0.00 37.50 2.24
278 279 0.967380 TTCCGGACGGAGGGAGTAAC 60.967 60.000 13.64 0.00 46.06 2.50
279 280 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
280 281 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
281 282 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
282 283 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
283 284 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
284 285 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
285 286 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
286 287 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
287 288 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
288 289 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
289 290 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
290 291 2.660189 TCCGACAAGTATTTCCGGAC 57.340 50.000 1.83 0.00 43.47 4.79
292 293 5.049680 CCATTTATCCGACAAGTATTTCCGG 60.050 44.000 0.00 0.00 41.36 5.14
293 294 5.756347 TCCATTTATCCGACAAGTATTTCCG 59.244 40.000 0.00 0.00 0.00 4.30
294 295 7.228706 ACATCCATTTATCCGACAAGTATTTCC 59.771 37.037 0.00 0.00 0.00 3.13
295 296 8.154649 ACATCCATTTATCCGACAAGTATTTC 57.845 34.615 0.00 0.00 0.00 2.17
296 297 9.793259 ATACATCCATTTATCCGACAAGTATTT 57.207 29.630 0.00 0.00 0.00 1.40
297 298 9.436957 GATACATCCATTTATCCGACAAGTATT 57.563 33.333 0.00 0.00 0.00 1.89
298 299 8.816894 AGATACATCCATTTATCCGACAAGTAT 58.183 33.333 0.00 0.00 0.00 2.12
299 300 8.088365 CAGATACATCCATTTATCCGACAAGTA 58.912 37.037 0.00 0.00 0.00 2.24
300 301 6.931281 CAGATACATCCATTTATCCGACAAGT 59.069 38.462 0.00 0.00 0.00 3.16
301 302 7.154656 TCAGATACATCCATTTATCCGACAAG 58.845 38.462 0.00 0.00 0.00 3.16
302 303 7.061566 TCAGATACATCCATTTATCCGACAA 57.938 36.000 0.00 0.00 0.00 3.18
303 304 6.664428 TCAGATACATCCATTTATCCGACA 57.336 37.500 0.00 0.00 0.00 4.35
304 305 7.155328 AGTTCAGATACATCCATTTATCCGAC 58.845 38.462 0.00 0.00 0.00 4.79
305 306 7.303182 AGTTCAGATACATCCATTTATCCGA 57.697 36.000 0.00 0.00 0.00 4.55
306 307 7.969536 AAGTTCAGATACATCCATTTATCCG 57.030 36.000 0.00 0.00 0.00 4.18
335 336 9.998106 GGCTAAAAATGGATGTATCTAGAACTA 57.002 33.333 0.00 0.00 0.00 2.24
336 337 8.494433 TGGCTAAAAATGGATGTATCTAGAACT 58.506 33.333 0.00 0.00 0.00 3.01
337 338 8.677148 TGGCTAAAAATGGATGTATCTAGAAC 57.323 34.615 0.00 0.00 0.00 3.01
338 339 9.866655 AATGGCTAAAAATGGATGTATCTAGAA 57.133 29.630 0.00 0.00 0.00 2.10
339 340 9.866655 AAATGGCTAAAAATGGATGTATCTAGA 57.133 29.630 0.00 0.00 0.00 2.43
341 342 9.866655 AGAAATGGCTAAAAATGGATGTATCTA 57.133 29.630 0.00 0.00 0.00 1.98
342 343 8.636213 CAGAAATGGCTAAAAATGGATGTATCT 58.364 33.333 0.00 0.00 0.00 1.98
343 344 7.383300 GCAGAAATGGCTAAAAATGGATGTATC 59.617 37.037 0.00 0.00 0.00 2.24
344 345 7.212274 GCAGAAATGGCTAAAAATGGATGTAT 58.788 34.615 0.00 0.00 0.00 2.29
345 346 6.572519 GCAGAAATGGCTAAAAATGGATGTA 58.427 36.000 0.00 0.00 0.00 2.29
346 347 5.422145 GCAGAAATGGCTAAAAATGGATGT 58.578 37.500 0.00 0.00 0.00 3.06
347 348 4.505191 CGCAGAAATGGCTAAAAATGGATG 59.495 41.667 0.00 0.00 0.00 3.51
348 349 4.402155 TCGCAGAAATGGCTAAAAATGGAT 59.598 37.500 0.00 0.00 0.00 3.41
349 350 3.761218 TCGCAGAAATGGCTAAAAATGGA 59.239 39.130 0.00 0.00 0.00 3.41
350 351 3.859386 GTCGCAGAAATGGCTAAAAATGG 59.141 43.478 0.00 0.00 39.69 3.16
351 352 4.324402 GTGTCGCAGAAATGGCTAAAAATG 59.676 41.667 0.00 0.00 39.69 2.32
352 353 4.485163 GTGTCGCAGAAATGGCTAAAAAT 58.515 39.130 0.00 0.00 39.69 1.82
353 354 3.608241 CGTGTCGCAGAAATGGCTAAAAA 60.608 43.478 0.00 0.00 39.69 1.94
354 355 2.095969 CGTGTCGCAGAAATGGCTAAAA 60.096 45.455 0.00 0.00 39.69 1.52
355 356 1.463056 CGTGTCGCAGAAATGGCTAAA 59.537 47.619 0.00 0.00 39.69 1.85
356 357 1.075542 CGTGTCGCAGAAATGGCTAA 58.924 50.000 0.00 0.00 39.69 3.09
357 358 0.037697 ACGTGTCGCAGAAATGGCTA 60.038 50.000 0.00 0.00 39.69 3.93
358 359 0.037697 TACGTGTCGCAGAAATGGCT 60.038 50.000 0.00 0.00 39.69 4.75
359 360 0.793861 TTACGTGTCGCAGAAATGGC 59.206 50.000 0.00 0.00 39.69 4.40
360 361 3.740044 AATTACGTGTCGCAGAAATGG 57.260 42.857 0.00 0.00 39.69 3.16
361 362 4.707563 TGAAATTACGTGTCGCAGAAATG 58.292 39.130 0.00 0.00 39.69 2.32
362 363 4.688879 TCTGAAATTACGTGTCGCAGAAAT 59.311 37.500 0.00 0.00 39.69 2.17
363 364 4.052608 TCTGAAATTACGTGTCGCAGAAA 58.947 39.130 0.00 0.00 39.69 2.52
364 365 3.427528 GTCTGAAATTACGTGTCGCAGAA 59.572 43.478 0.00 0.00 39.69 3.02
365 366 2.984471 GTCTGAAATTACGTGTCGCAGA 59.016 45.455 0.00 2.03 0.00 4.26
366 367 2.222289 CGTCTGAAATTACGTGTCGCAG 60.222 50.000 0.00 0.00 34.48 5.18
367 368 1.717113 CGTCTGAAATTACGTGTCGCA 59.283 47.619 0.00 0.00 34.48 5.10
368 369 1.058695 CCGTCTGAAATTACGTGTCGC 59.941 52.381 0.00 0.00 37.40 5.19
369 370 2.587956 TCCGTCTGAAATTACGTGTCG 58.412 47.619 0.00 0.00 37.40 4.35
370 371 2.921754 CCTCCGTCTGAAATTACGTGTC 59.078 50.000 0.00 0.00 37.40 3.67
371 372 2.353406 CCCTCCGTCTGAAATTACGTGT 60.353 50.000 0.00 0.00 37.40 4.49
372 373 2.094390 TCCCTCCGTCTGAAATTACGTG 60.094 50.000 0.00 0.00 37.40 4.49
373 374 2.165845 CTCCCTCCGTCTGAAATTACGT 59.834 50.000 0.00 0.00 37.40 3.57
374 375 2.165845 ACTCCCTCCGTCTGAAATTACG 59.834 50.000 0.00 0.00 38.80 3.18
375 376 3.889520 ACTCCCTCCGTCTGAAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
376 377 6.070424 ACATTTACTCCCTCCGTCTGAAATTA 60.070 38.462 0.00 0.00 0.00 1.40
377 378 4.903045 TTTACTCCCTCCGTCTGAAATT 57.097 40.909 0.00 0.00 0.00 1.82
378 379 4.225267 ACATTTACTCCCTCCGTCTGAAAT 59.775 41.667 0.00 0.00 0.00 2.17
379 380 3.581332 ACATTTACTCCCTCCGTCTGAAA 59.419 43.478 0.00 0.00 0.00 2.69
380 381 3.170717 ACATTTACTCCCTCCGTCTGAA 58.829 45.455 0.00 0.00 0.00 3.02
381 382 2.816411 ACATTTACTCCCTCCGTCTGA 58.184 47.619 0.00 0.00 0.00 3.27
382 383 3.611766 AACATTTACTCCCTCCGTCTG 57.388 47.619 0.00 0.00 0.00 3.51
383 384 4.161754 CCTTAACATTTACTCCCTCCGTCT 59.838 45.833 0.00 0.00 0.00 4.18
384 385 4.439968 CCTTAACATTTACTCCCTCCGTC 58.560 47.826 0.00 0.00 0.00 4.79
385 386 3.199289 CCCTTAACATTTACTCCCTCCGT 59.801 47.826 0.00 0.00 0.00 4.69
386 387 3.199289 ACCCTTAACATTTACTCCCTCCG 59.801 47.826 0.00 0.00 0.00 4.63
387 388 4.857130 ACCCTTAACATTTACTCCCTCC 57.143 45.455 0.00 0.00 0.00 4.30
388 389 6.827251 CCTTTACCCTTAACATTTACTCCCTC 59.173 42.308 0.00 0.00 0.00 4.30
389 390 6.297418 CCCTTTACCCTTAACATTTACTCCCT 60.297 42.308 0.00 0.00 0.00 4.20
390 391 5.889853 CCCTTTACCCTTAACATTTACTCCC 59.110 44.000 0.00 0.00 0.00 4.30
391 392 6.724351 TCCCTTTACCCTTAACATTTACTCC 58.276 40.000 0.00 0.00 0.00 3.85
392 393 7.201794 GCATCCCTTTACCCTTAACATTTACTC 60.202 40.741 0.00 0.00 0.00 2.59
393 394 6.605995 GCATCCCTTTACCCTTAACATTTACT 59.394 38.462 0.00 0.00 0.00 2.24
394 395 6.459161 CGCATCCCTTTACCCTTAACATTTAC 60.459 42.308 0.00 0.00 0.00 2.01
397 398 3.951680 CGCATCCCTTTACCCTTAACATT 59.048 43.478 0.00 0.00 0.00 2.71
512 513 7.560368 ACATCCTCCTGTCTGTTAGAAATAAG 58.440 38.462 0.00 0.00 0.00 1.73
529 530 3.263261 GAAAGGAAAGACGACATCCTCC 58.737 50.000 11.39 5.14 42.72 4.30
552 553 1.202132 GCGAATTAATTCTGCGCCACA 60.202 47.619 22.52 0.00 41.65 4.17
559 560 3.849645 GCCATGGACGCGAATTAATTCTG 60.850 47.826 18.40 17.41 34.69 3.02
560 561 2.290641 GCCATGGACGCGAATTAATTCT 59.709 45.455 18.40 7.29 34.69 2.40
607 608 1.228552 TCAAAGCAACTGGAGGGCC 60.229 57.895 0.00 0.00 0.00 5.80
610 611 2.704572 CCTACTCAAAGCAACTGGAGG 58.295 52.381 0.00 0.00 0.00 4.30
611 612 2.079925 GCCTACTCAAAGCAACTGGAG 58.920 52.381 0.00 0.00 0.00 3.86
612 613 1.419762 TGCCTACTCAAAGCAACTGGA 59.580 47.619 0.00 0.00 32.56 3.86
613 614 1.896220 TGCCTACTCAAAGCAACTGG 58.104 50.000 0.00 0.00 32.56 4.00
614 615 2.227388 CCTTGCCTACTCAAAGCAACTG 59.773 50.000 0.00 0.00 41.35 3.16
615 616 2.508526 CCTTGCCTACTCAAAGCAACT 58.491 47.619 0.00 0.00 41.35 3.16
622 623 1.002134 GCTGCCCTTGCCTACTCAA 60.002 57.895 0.00 0.00 36.33 3.02
692 694 2.188469 GGCAGGGCCGTTATCGAA 59.812 61.111 0.00 0.00 39.62 3.71
724 726 2.645730 ACGCAACACTTTCTTTTGCA 57.354 40.000 6.37 0.00 44.85 4.08
740 742 2.001880 GTTTTGACGCACCGAACGC 61.002 57.895 0.00 0.00 0.00 4.84
753 755 8.853345 CGATCTGGATGAAGTAAAAATGTTTTG 58.147 33.333 0.00 0.00 0.00 2.44
766 768 5.299531 TGTTCTACTACCGATCTGGATGAAG 59.700 44.000 10.05 5.15 42.00 3.02
771 773 4.597004 AGTTGTTCTACTACCGATCTGGA 58.403 43.478 10.05 0.00 42.00 3.86
774 776 4.219944 TGCAAGTTGTTCTACTACCGATCT 59.780 41.667 4.48 0.00 0.00 2.75
775 777 4.491676 TGCAAGTTGTTCTACTACCGATC 58.508 43.478 4.48 0.00 0.00 3.69
780 782 8.225356 GTAGTAGTTGCAAGTTGTTCTACTAC 57.775 38.462 30.04 30.04 45.58 2.73
803 805 4.591321 AGGCATTCATTTCCTTCTGGTA 57.409 40.909 0.00 0.00 34.23 3.25
826 828 8.721478 TCTTCTACCGATCTTGAAATTTTCTTG 58.279 33.333 10.33 3.77 0.00 3.02
857 859 0.872388 CCGGTGGTAGTTGCAAGTTC 59.128 55.000 12.95 7.26 0.00 3.01
859 861 0.250166 GTCCGGTGGTAGTTGCAAGT 60.250 55.000 12.28 12.28 0.00 3.16
861 863 1.301087 CGTCCGGTGGTAGTTGCAA 60.301 57.895 0.00 0.00 0.00 4.08
894 896 1.165270 ATTCGGGCGGACTTTTCTTG 58.835 50.000 0.00 0.00 0.00 3.02
949 952 0.546122 TATAAGGGTGGCAGTGGCAG 59.454 55.000 21.25 0.00 43.71 4.85
950 953 1.221635 ATATAAGGGTGGCAGTGGCA 58.778 50.000 16.56 16.56 43.71 4.92
951 954 3.072476 TCTTATATAAGGGTGGCAGTGGC 59.928 47.826 19.98 10.30 35.07 5.01
952 955 4.974645 TCTTATATAAGGGTGGCAGTGG 57.025 45.455 19.98 0.00 34.14 4.00
953 956 6.114187 TGATCTTATATAAGGGTGGCAGTG 57.886 41.667 19.98 0.00 34.14 3.66
954 957 5.280215 GCTGATCTTATATAAGGGTGGCAGT 60.280 44.000 19.98 0.28 34.14 4.40
962 965 6.365970 AGGTGGTGCTGATCTTATATAAGG 57.634 41.667 19.98 7.24 34.14 2.69
977 980 1.376037 GAGCCAGTGTAGGTGGTGC 60.376 63.158 0.00 0.00 37.40 5.01
1055 1095 2.656002 CTGTCCTAGCTACCTGTGCTA 58.344 52.381 0.00 0.00 41.46 3.49
1056 1096 1.479709 CTGTCCTAGCTACCTGTGCT 58.520 55.000 0.00 0.00 43.79 4.40
1057 1097 0.461961 CCTGTCCTAGCTACCTGTGC 59.538 60.000 0.00 0.00 0.00 4.57
1058 1098 2.145397 TCCTGTCCTAGCTACCTGTG 57.855 55.000 0.00 0.00 0.00 3.66
1121 1164 3.645268 GAGGCCGGCCCACTTGATT 62.645 63.158 41.72 21.56 36.58 2.57
1232 1317 2.186384 CTCTGCTTCTCTGCGGGG 59.814 66.667 0.00 0.00 39.62 5.73
1322 1413 2.425592 TGGAACTGCCAGGTGACG 59.574 61.111 0.00 0.00 43.33 4.35
1358 1449 7.697710 CGACGGAATGTACTTAGTGTAATAACA 59.302 37.037 0.00 0.00 32.25 2.41
1359 1450 7.698130 ACGACGGAATGTACTTAGTGTAATAAC 59.302 37.037 0.00 0.00 32.25 1.89
1360 1451 7.761409 ACGACGGAATGTACTTAGTGTAATAA 58.239 34.615 0.00 0.00 32.25 1.40
1361 1452 7.320443 ACGACGGAATGTACTTAGTGTAATA 57.680 36.000 0.00 0.00 32.25 0.98
1362 1453 6.199937 ACGACGGAATGTACTTAGTGTAAT 57.800 37.500 0.00 0.00 32.25 1.89
1363 1454 5.627499 ACGACGGAATGTACTTAGTGTAA 57.373 39.130 0.00 0.00 32.25 2.41
1364 1455 5.627499 AACGACGGAATGTACTTAGTGTA 57.373 39.130 0.00 0.00 0.00 2.90
1365 1456 4.510038 AACGACGGAATGTACTTAGTGT 57.490 40.909 0.00 0.00 0.00 3.55
1366 1457 5.457799 CCATAACGACGGAATGTACTTAGTG 59.542 44.000 0.00 0.00 0.00 2.74
1367 1458 5.126061 ACCATAACGACGGAATGTACTTAGT 59.874 40.000 0.00 0.00 0.00 2.24
1368 1459 5.585390 ACCATAACGACGGAATGTACTTAG 58.415 41.667 0.00 0.00 0.00 2.18
1370 1461 4.460948 ACCATAACGACGGAATGTACTT 57.539 40.909 0.00 0.00 0.00 2.24
1371 1462 4.082081 TCAACCATAACGACGGAATGTACT 60.082 41.667 0.00 0.00 0.00 2.73
1803 1954 2.032681 AAGTCCCTGTGAAGGCGC 59.967 61.111 0.00 0.00 0.00 6.53
1929 3062 1.046472 TGTCGTTGTGTCCCCAGAGT 61.046 55.000 0.00 0.00 0.00 3.24
1962 3095 0.798389 TCATCGTCTTTGCGAGCTCG 60.798 55.000 31.37 31.37 44.43 5.03
1971 3104 5.172205 GGAGCTTACTCTTTCATCGTCTTT 58.828 41.667 0.00 0.00 42.98 2.52
1995 3128 5.751028 GCTTATGCTTACGTCTGAAATCTCT 59.249 40.000 0.00 0.00 36.03 3.10
2240 3414 6.939132 AATTAAGCACTCTCCAGAATGATG 57.061 37.500 0.00 0.00 39.69 3.07
2284 3458 2.086610 AACTGCAACAAATGGGACCT 57.913 45.000 0.00 0.00 0.00 3.85
2331 3507 7.061905 GGTATTATGCATCACGTACACTCATAC 59.938 40.741 0.19 0.00 0.00 2.39
2373 3556 7.724305 AAAAGAAGTACTAGACAAATTGCGA 57.276 32.000 0.00 0.00 0.00 5.10
2419 3602 6.882610 TGAAGCATTTCAAGTGAATGTACT 57.117 33.333 0.00 0.00 40.26 2.73
2444 3628 3.814504 AACCTCATTCCACTGTCCATT 57.185 42.857 0.00 0.00 0.00 3.16
2457 3649 6.407525 GGTTAGAGATGCTCTTGTAACCTCAT 60.408 42.308 15.43 0.00 40.10 2.90
2540 3734 5.626142 TGGTTGGTACTCAAAGCAAGATTA 58.374 37.500 0.00 0.00 37.52 1.75
2541 3735 4.469657 TGGTTGGTACTCAAAGCAAGATT 58.530 39.130 0.00 0.00 37.52 2.40
2542 3736 4.098914 TGGTTGGTACTCAAAGCAAGAT 57.901 40.909 0.00 0.00 37.52 2.40
2543 3737 3.569194 TGGTTGGTACTCAAAGCAAGA 57.431 42.857 0.00 0.00 37.52 3.02
2544 3738 4.853924 AATGGTTGGTACTCAAAGCAAG 57.146 40.909 10.73 0.00 37.52 4.01
2545 3739 4.892934 AGAAATGGTTGGTACTCAAAGCAA 59.107 37.500 10.73 0.00 37.08 3.91
2546 3740 4.469657 AGAAATGGTTGGTACTCAAAGCA 58.530 39.130 9.60 9.60 37.08 3.91
2547 3741 4.082733 GGAGAAATGGTTGGTACTCAAAGC 60.083 45.833 0.00 0.00 37.08 3.51
2548 3742 5.070001 TGGAGAAATGGTTGGTACTCAAAG 58.930 41.667 0.00 0.00 37.08 2.77
2549 3743 5.055265 TGGAGAAATGGTTGGTACTCAAA 57.945 39.130 0.00 0.00 37.08 2.69
2550 3744 4.715534 TGGAGAAATGGTTGGTACTCAA 57.284 40.909 0.00 0.00 0.00 3.02
2551 3745 4.715534 TTGGAGAAATGGTTGGTACTCA 57.284 40.909 0.00 0.00 0.00 3.41
2552 3746 5.535030 AGTTTTGGAGAAATGGTTGGTACTC 59.465 40.000 0.00 0.00 0.00 2.59
2553 3747 5.454966 AGTTTTGGAGAAATGGTTGGTACT 58.545 37.500 0.00 0.00 0.00 2.73
2554 3748 5.784578 AGTTTTGGAGAAATGGTTGGTAC 57.215 39.130 0.00 0.00 0.00 3.34
2661 3855 2.520741 GCGAGAGGGAGAGGGGAG 60.521 72.222 0.00 0.00 0.00 4.30
2696 3890 2.283809 GGCTAGGGCTCCCTCTCA 59.716 66.667 11.41 0.00 44.43 3.27
2798 3992 2.290071 GGGAGATGAAAGAAACCCGACA 60.290 50.000 0.00 0.00 0.00 4.35
2800 3994 2.781681 GGGAGATGAAAGAAACCCGA 57.218 50.000 0.00 0.00 0.00 5.14
2805 3999 2.151202 GTGCACGGGAGATGAAAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
2956 4160 4.193893 CCGCCATGCCATCCCTGA 62.194 66.667 0.00 0.00 0.00 3.86
2972 4176 2.049618 CTAGATCTGAGCGCCGCC 60.050 66.667 4.98 0.00 0.00 6.13
3038 4242 2.267006 CAGACCGCCACAGCAGAT 59.733 61.111 0.00 0.00 39.83 2.90
3044 4248 4.624364 CACCAGCAGACCGCCACA 62.624 66.667 0.00 0.00 44.04 4.17
3074 4278 1.595382 GTCGCACCAAGACTGCAGT 60.595 57.895 21.88 21.88 35.84 4.40
3083 4287 2.904866 GTTGGCCTGTCGCACCAA 60.905 61.111 3.32 0.00 41.08 3.67
3117 4321 2.277404 GGAGAGGAGGAGGAGCGT 59.723 66.667 0.00 0.00 0.00 5.07
3132 4684 0.974383 GACGAACAGGAGGAAAGGGA 59.026 55.000 0.00 0.00 0.00 4.20
3133 4685 0.685097 TGACGAACAGGAGGAAAGGG 59.315 55.000 0.00 0.00 0.00 3.95
3143 4695 0.671781 CCAAGCTCCCTGACGAACAG 60.672 60.000 0.00 0.00 45.36 3.16
3148 4700 1.672356 CCAACCAAGCTCCCTGACG 60.672 63.158 0.00 0.00 0.00 4.35
3150 4702 1.492133 CCTCCAACCAAGCTCCCTGA 61.492 60.000 0.00 0.00 0.00 3.86
3160 4712 2.237965 CCACCCATCCCTCCAACCA 61.238 63.158 0.00 0.00 0.00 3.67
3214 4788 1.221021 GAAAGGGGAGCGGACGAAT 59.779 57.895 0.00 0.00 0.00 3.34
3245 4819 3.697747 CTAACCCACCCGCGGTCA 61.698 66.667 26.12 0.00 31.02 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.