Multiple sequence alignment - TraesCS3B01G520500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G520500 chr3B 100.000 4865 0 0 1 4865 763557136 763562000 0.000000e+00 8985.0
1 TraesCS3B01G520500 chr3B 93.708 2368 128 10 1310 3661 281517251 281519613 0.000000e+00 3528.0
2 TraesCS3B01G520500 chr3B 93.668 2369 126 13 1310 3661 281415521 281417882 0.000000e+00 3522.0
3 TraesCS3B01G520500 chr3B 94.913 1887 64 7 705 2587 793124951 793126809 0.000000e+00 2924.0
4 TraesCS3B01G520500 chr3B 96.434 1206 33 3 2949 4147 793127093 793128295 0.000000e+00 1980.0
5 TraesCS3B01G520500 chr3B 95.804 715 30 0 4151 4865 344170256 344170970 0.000000e+00 1155.0
6 TraesCS3B01G520500 chr3B 94.759 706 36 1 1 705 382284527 382285232 0.000000e+00 1098.0
7 TraesCS3B01G520500 chr3B 99.208 505 4 0 3647 4151 763557841 763558345 0.000000e+00 911.0
8 TraesCS3B01G520500 chr3B 99.208 505 4 0 706 1210 763560782 763561286 0.000000e+00 911.0
9 TraesCS3B01G520500 chr3B 80.153 131 19 4 3543 3666 807548928 807548798 1.860000e-14 91.6
10 TraesCS3B01G520500 chr1B 96.824 3463 90 3 706 4151 563542054 563538595 0.000000e+00 5768.0
11 TraesCS3B01G520500 chr1B 96.364 715 26 0 4151 4865 309465557 309466271 0.000000e+00 1177.0
12 TraesCS3B01G520500 chr1B 96.224 715 27 0 4151 4865 325472450 325471736 0.000000e+00 1171.0
13 TraesCS3B01G520500 chr1B 95.944 715 29 0 4151 4865 301020927 301020213 0.000000e+00 1160.0
14 TraesCS3B01G520500 chr1B 94.894 705 35 1 1 705 271464232 271463529 0.000000e+00 1101.0
15 TraesCS3B01G520500 chr1B 94.610 705 38 0 1 705 330359884 330359180 0.000000e+00 1092.0
16 TraesCS3B01G520500 chr1B 94.302 702 40 0 4 705 302565838 302565137 0.000000e+00 1075.0
17 TraesCS3B01G520500 chr1B 98.814 506 6 0 706 1211 563539099 563538594 0.000000e+00 902.0
18 TraesCS3B01G520500 chr1B 98.622 508 5 1 3646 4151 563542055 563541548 0.000000e+00 898.0
19 TraesCS3B01G520500 chr1B 98.805 502 6 0 3647 4148 16672946 16672445 0.000000e+00 894.0
20 TraesCS3B01G520500 chr7B 95.841 2212 60 12 705 2913 372580213 372578031 0.000000e+00 3546.0
21 TraesCS3B01G520500 chr7B 96.179 1204 40 3 2949 4150 372578130 372576931 0.000000e+00 1964.0
22 TraesCS3B01G520500 chr7B 94.468 705 39 0 1 705 141067334 141068038 0.000000e+00 1086.0
23 TraesCS3B01G520500 chr7B 94.468 705 39 0 1 705 141269332 141268628 0.000000e+00 1086.0
24 TraesCS3B01G520500 chr7B 94.184 705 39 2 1 705 677293406 677292704 0.000000e+00 1074.0
25 TraesCS3B01G520500 chr7B 99.010 505 5 0 3647 4151 372580212 372579708 0.000000e+00 905.0
26 TraesCS3B01G520500 chr2B 95.713 2216 58 14 706 2913 106119068 106116882 0.000000e+00 3531.0
27 TraesCS3B01G520500 chr2B 92.731 2380 137 15 1313 3661 724653243 724650869 0.000000e+00 3404.0
28 TraesCS3B01G520500 chr2B 88.201 2051 224 7 1195 3229 797173919 797175967 0.000000e+00 2431.0
29 TraesCS3B01G520500 chr2B 89.582 1651 137 17 972 2603 161110785 161112419 0.000000e+00 2063.0
30 TraesCS3B01G520500 chr2B 88.469 1561 134 21 957 2483 29974038 29972490 0.000000e+00 1844.0
31 TraesCS3B01G520500 chr2B 96.020 980 33 3 3176 4153 106116799 106115824 0.000000e+00 1589.0
32 TraesCS3B01G520500 chr2B 95.670 716 30 1 4150 4865 544937854 544938568 0.000000e+00 1149.0
33 TraesCS3B01G520500 chr6B 93.570 1913 89 7 706 2603 133450734 133448841 0.000000e+00 2820.0
34 TraesCS3B01G520500 chr6B 95.930 1204 41 3 2949 4151 133448573 133447377 0.000000e+00 1945.0
35 TraesCS3B01G520500 chr6B 95.804 715 30 0 4151 4865 184215692 184214978 0.000000e+00 1155.0
36 TraesCS3B01G520500 chr6B 94.610 705 38 0 1 705 411479975 411479271 0.000000e+00 1092.0
37 TraesCS3B01G520500 chr4D 89.745 2116 184 11 1186 3282 389820788 389822889 0.000000e+00 2675.0
38 TraesCS3B01G520500 chr4A 93.641 1667 82 7 957 2603 593189944 593191606 0.000000e+00 2470.0
39 TraesCS3B01G520500 chr4A 91.491 1657 111 10 973 2603 25767532 25769184 0.000000e+00 2252.0
40 TraesCS3B01G520500 chrUn 87.792 2097 214 17 1150 3229 49959967 49957896 0.000000e+00 2416.0
41 TraesCS3B01G520500 chrUn 100.000 409 0 0 802 1210 477865013 477864605 0.000000e+00 756.0
42 TraesCS3B01G520500 chr7A 94.983 1455 72 1 1150 2603 18774453 18772999 0.000000e+00 2281.0
43 TraesCS3B01G520500 chr5A 95.817 1291 54 0 1313 2603 461880234 461878944 0.000000e+00 2085.0
44 TraesCS3B01G520500 chr5A 92.710 1166 76 2 2524 3683 702867623 702866461 0.000000e+00 1674.0
45 TraesCS3B01G520500 chr3A 95.662 1291 56 0 1313 2603 36385181 36383891 0.000000e+00 2074.0
46 TraesCS3B01G520500 chr3A 95.618 1255 54 1 1350 2603 36387900 36386646 0.000000e+00 2012.0
47 TraesCS3B01G520500 chr1D 90.347 1440 120 7 1181 2603 207009165 207010602 0.000000e+00 1871.0
48 TraesCS3B01G520500 chr1D 85.987 157 14 2 3540 3690 325631136 325630982 1.400000e-35 161.0
49 TraesCS3B01G520500 chr5B 95.810 716 30 0 4150 4865 140332634 140331919 0.000000e+00 1157.0
50 TraesCS3B01G520500 chr5B 95.804 715 30 0 4151 4865 209484305 209485019 0.000000e+00 1155.0
51 TraesCS3B01G520500 chr5B 95.664 715 31 0 4151 4865 64173017 64173731 0.000000e+00 1149.0
52 TraesCS3B01G520500 chr5B 95.035 705 34 1 1 705 209483606 209484309 0.000000e+00 1107.0
53 TraesCS3B01G520500 chr4B 90.193 724 61 5 2949 3666 75566258 75566977 0.000000e+00 935.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G520500 chr3B 763557136 763562000 4864 False 8985.000000 8985 100.000000 1 4865 1 chr3B.!!$F5 4864
1 TraesCS3B01G520500 chr3B 281517251 281519613 2362 False 3528.000000 3528 93.708000 1310 3661 1 chr3B.!!$F2 2351
2 TraesCS3B01G520500 chr3B 281415521 281417882 2361 False 3522.000000 3522 93.668000 1310 3661 1 chr3B.!!$F1 2351
3 TraesCS3B01G520500 chr3B 793124951 793128295 3344 False 2452.000000 2924 95.673500 705 4147 2 chr3B.!!$F7 3442
4 TraesCS3B01G520500 chr3B 344170256 344170970 714 False 1155.000000 1155 95.804000 4151 4865 1 chr3B.!!$F3 714
5 TraesCS3B01G520500 chr3B 382284527 382285232 705 False 1098.000000 1098 94.759000 1 705 1 chr3B.!!$F4 704
6 TraesCS3B01G520500 chr3B 763557841 763561286 3445 False 911.000000 911 99.208000 706 4151 2 chr3B.!!$F6 3445
7 TraesCS3B01G520500 chr1B 563538594 563542055 3461 True 2522.666667 5768 98.086667 706 4151 3 chr1B.!!$R7 3445
8 TraesCS3B01G520500 chr1B 309465557 309466271 714 False 1177.000000 1177 96.364000 4151 4865 1 chr1B.!!$F1 714
9 TraesCS3B01G520500 chr1B 325471736 325472450 714 True 1171.000000 1171 96.224000 4151 4865 1 chr1B.!!$R5 714
10 TraesCS3B01G520500 chr1B 301020213 301020927 714 True 1160.000000 1160 95.944000 4151 4865 1 chr1B.!!$R3 714
11 TraesCS3B01G520500 chr1B 271463529 271464232 703 True 1101.000000 1101 94.894000 1 705 1 chr1B.!!$R2 704
12 TraesCS3B01G520500 chr1B 330359180 330359884 704 True 1092.000000 1092 94.610000 1 705 1 chr1B.!!$R6 704
13 TraesCS3B01G520500 chr1B 302565137 302565838 701 True 1075.000000 1075 94.302000 4 705 1 chr1B.!!$R4 701
14 TraesCS3B01G520500 chr1B 16672445 16672946 501 True 894.000000 894 98.805000 3647 4148 1 chr1B.!!$R1 501
15 TraesCS3B01G520500 chr7B 372576931 372580213 3282 True 2138.333333 3546 97.010000 705 4151 3 chr7B.!!$R3 3446
16 TraesCS3B01G520500 chr7B 141067334 141068038 704 False 1086.000000 1086 94.468000 1 705 1 chr7B.!!$F1 704
17 TraesCS3B01G520500 chr7B 141268628 141269332 704 True 1086.000000 1086 94.468000 1 705 1 chr7B.!!$R1 704
18 TraesCS3B01G520500 chr7B 677292704 677293406 702 True 1074.000000 1074 94.184000 1 705 1 chr7B.!!$R2 704
19 TraesCS3B01G520500 chr2B 724650869 724653243 2374 True 3404.000000 3404 92.731000 1313 3661 1 chr2B.!!$R2 2348
20 TraesCS3B01G520500 chr2B 106115824 106119068 3244 True 2560.000000 3531 95.866500 706 4153 2 chr2B.!!$R3 3447
21 TraesCS3B01G520500 chr2B 797173919 797175967 2048 False 2431.000000 2431 88.201000 1195 3229 1 chr2B.!!$F3 2034
22 TraesCS3B01G520500 chr2B 161110785 161112419 1634 False 2063.000000 2063 89.582000 972 2603 1 chr2B.!!$F1 1631
23 TraesCS3B01G520500 chr2B 29972490 29974038 1548 True 1844.000000 1844 88.469000 957 2483 1 chr2B.!!$R1 1526
24 TraesCS3B01G520500 chr2B 544937854 544938568 714 False 1149.000000 1149 95.670000 4150 4865 1 chr2B.!!$F2 715
25 TraesCS3B01G520500 chr6B 133447377 133450734 3357 True 2382.500000 2820 94.750000 706 4151 2 chr6B.!!$R3 3445
26 TraesCS3B01G520500 chr6B 184214978 184215692 714 True 1155.000000 1155 95.804000 4151 4865 1 chr6B.!!$R1 714
27 TraesCS3B01G520500 chr6B 411479271 411479975 704 True 1092.000000 1092 94.610000 1 705 1 chr6B.!!$R2 704
28 TraesCS3B01G520500 chr4D 389820788 389822889 2101 False 2675.000000 2675 89.745000 1186 3282 1 chr4D.!!$F1 2096
29 TraesCS3B01G520500 chr4A 593189944 593191606 1662 False 2470.000000 2470 93.641000 957 2603 1 chr4A.!!$F2 1646
30 TraesCS3B01G520500 chr4A 25767532 25769184 1652 False 2252.000000 2252 91.491000 973 2603 1 chr4A.!!$F1 1630
31 TraesCS3B01G520500 chrUn 49957896 49959967 2071 True 2416.000000 2416 87.792000 1150 3229 1 chrUn.!!$R1 2079
32 TraesCS3B01G520500 chr7A 18772999 18774453 1454 True 2281.000000 2281 94.983000 1150 2603 1 chr7A.!!$R1 1453
33 TraesCS3B01G520500 chr5A 461878944 461880234 1290 True 2085.000000 2085 95.817000 1313 2603 1 chr5A.!!$R1 1290
34 TraesCS3B01G520500 chr5A 702866461 702867623 1162 True 1674.000000 1674 92.710000 2524 3683 1 chr5A.!!$R2 1159
35 TraesCS3B01G520500 chr3A 36383891 36387900 4009 True 2043.000000 2074 95.640000 1313 2603 2 chr3A.!!$R1 1290
36 TraesCS3B01G520500 chr1D 207009165 207010602 1437 False 1871.000000 1871 90.347000 1181 2603 1 chr1D.!!$F1 1422
37 TraesCS3B01G520500 chr5B 140331919 140332634 715 True 1157.000000 1157 95.810000 4150 4865 1 chr5B.!!$R1 715
38 TraesCS3B01G520500 chr5B 64173017 64173731 714 False 1149.000000 1149 95.664000 4151 4865 1 chr5B.!!$F1 714
39 TraesCS3B01G520500 chr5B 209483606 209485019 1413 False 1131.000000 1155 95.419500 1 4865 2 chr5B.!!$F2 4864
40 TraesCS3B01G520500 chr4B 75566258 75566977 719 False 935.000000 935 90.193000 2949 3666 1 chr4B.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.032267 CGGCGACCCTTCTTCTATCC 59.968 60.000 0.00 0.0 0.00 2.59 F
1917 1958 0.393132 TGAGTGAGCTCTCCGTCGAT 60.393 55.000 16.19 0.0 42.13 3.59 F
2223 2279 1.403679 CTCGTCGAGGCTGAAGAAGAT 59.596 52.381 14.68 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2179 1.690352 GGCCCTTGATGCTGCAATATT 59.310 47.619 6.36 0.0 0.00 1.28 R
3449 3562 1.321074 CCCTAGGCTTCGTCGGAACT 61.321 60.000 2.05 0.0 0.00 3.01 R
4189 7568 1.074244 GGTGTTTAACCCAGGTGCCTA 59.926 52.381 0.00 0.0 44.02 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.268920 GCCGAGCAGTTGGATCCA 59.731 61.111 11.44 11.44 0.00 3.41
67 68 5.248640 CAATGGAGCTCTCTTCCTTAAACA 58.751 41.667 14.64 0.00 0.00 2.83
123 124 4.036971 GCTACAGACTACGATCAGATTGGT 59.963 45.833 2.51 0.00 0.00 3.67
214 215 0.032267 CGGCGACCCTTCTTCTATCC 59.968 60.000 0.00 0.00 0.00 2.59
241 242 2.248248 CTAGCTATGTCCGGATTCCCA 58.752 52.381 7.81 0.00 0.00 4.37
334 335 5.352569 GGGCTAGATTCATTGGACAATATCG 59.647 44.000 0.00 0.00 0.00 2.92
373 374 1.061546 TTCGGAAACTACTTGGCCCT 58.938 50.000 0.00 0.00 0.00 5.19
415 416 4.021229 GGTTCCGAATTTAATTCCACCCT 58.979 43.478 11.53 0.00 35.89 4.34
440 441 5.512404 CCCACCCAAACATAAGCGATCTATA 60.512 44.000 0.00 0.00 0.00 1.31
700 702 3.721868 GGGACAATCCGACCCTGA 58.278 61.111 0.00 0.00 45.35 3.86
701 703 1.988015 GGGACAATCCGACCCTGAA 59.012 57.895 0.00 0.00 45.35 3.02
702 704 0.546598 GGGACAATCCGACCCTGAAT 59.453 55.000 0.00 0.00 45.35 2.57
703 705 1.766496 GGGACAATCCGACCCTGAATA 59.234 52.381 0.00 0.00 45.35 1.75
759 761 2.684881 GCTATGCATGCTTGGTTACAGT 59.315 45.455 20.33 0.00 0.00 3.55
785 787 3.260884 AGCAGTAGCAGTTACTTAGCCAA 59.739 43.478 0.00 0.00 45.49 4.52
924 926 4.193826 AGTCGTCAGCAGTGATGTAATT 57.806 40.909 8.47 0.00 40.22 1.40
1303 1317 4.552365 CCCAGTCGCGGCCATCAT 62.552 66.667 7.31 0.00 0.00 2.45
1327 1368 3.461773 GCTCCCAGTCGCCAGCTA 61.462 66.667 0.00 0.00 0.00 3.32
1395 1436 2.108970 GAGGTCGTGGTTAGGGAGATT 58.891 52.381 0.00 0.00 0.00 2.40
1501 1542 0.955428 GGAGTGCAACCTTCATGCGA 60.955 55.000 0.00 0.00 46.76 5.10
1917 1958 0.393132 TGAGTGAGCTCTCCGTCGAT 60.393 55.000 16.19 0.00 42.13 3.59
2123 2179 2.338620 CGACCGAGACAAGTGCCA 59.661 61.111 0.00 0.00 0.00 4.92
2223 2279 1.403679 CTCGTCGAGGCTGAAGAAGAT 59.596 52.381 14.68 0.00 0.00 2.40
2876 2989 3.991051 CTATGCCGCGACCCCGAT 61.991 66.667 8.23 0.00 38.22 4.18
2920 3033 2.753043 GGGACGCACGGGACTCTA 60.753 66.667 0.00 0.00 0.00 2.43
2951 3064 3.379445 CCCGACTACGCTGGTGGT 61.379 66.667 0.00 0.00 40.97 4.16
2957 3070 4.367023 TACGCTGGTGGTGACCGC 62.367 66.667 6.63 6.63 46.62 5.68
3297 3410 2.283316 TCCGACACGATGACCCCA 60.283 61.111 0.00 0.00 0.00 4.96
3390 3503 2.796483 TTCCCGGGCAGTTCATGTCG 62.796 60.000 18.49 0.00 32.79 4.35
3454 3567 0.605319 TGGCGATCCACACAAGTTCC 60.605 55.000 0.00 0.00 37.47 3.62
3455 3568 1.635663 GGCGATCCACACAAGTTCCG 61.636 60.000 0.00 0.00 0.00 4.30
3456 3569 0.669318 GCGATCCACACAAGTTCCGA 60.669 55.000 0.00 0.00 0.00 4.55
3621 3734 1.123928 GGACCGGGATCATCAAGACT 58.876 55.000 6.32 0.00 0.00 3.24
3666 3779 5.888161 AGATTGTTGAGTCAAACCTGTCTTT 59.112 36.000 7.25 0.00 0.00 2.52
4189 7568 5.505654 CGAAATAAAAGGGTGCATTATCGCT 60.506 40.000 0.00 0.00 0.00 4.93
4271 8366 0.259938 GGATGGCTCAATGGACCCTT 59.740 55.000 0.00 0.00 0.00 3.95
4373 8554 2.737039 GCGAAGAGCTTCTAACTCCAGG 60.737 54.545 8.44 0.00 44.04 4.45
4484 9442 3.863400 GCCGAAGTCTACCAAGTAGCAAA 60.863 47.826 0.00 0.00 36.22 3.68
4531 9489 5.588648 GCTATTACCTTTAATGCCAGTGACA 59.411 40.000 0.00 0.00 0.00 3.58
4690 10241 3.494398 GGAAATAGACTGGAGCCGCATTA 60.494 47.826 0.00 0.00 0.00 1.90
4775 10581 1.868997 CACTGGATGTGGTGTTCGC 59.131 57.895 0.00 0.00 42.68 4.70
4825 10841 4.966787 TGTTCCAAGTGGCCCCGC 62.967 66.667 0.00 0.00 34.44 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.505181 TGTTTAAGGAAGAGAGCTCCATT 57.495 39.130 10.93 5.3 0.00 3.16
67 68 1.156645 GCGATGCGATCCAAGAGCTT 61.157 55.000 0.00 0.0 0.00 3.74
123 124 3.202373 TCTCTCTCAGATCGGGTTTAGGA 59.798 47.826 0.00 0.0 0.00 2.94
273 274 1.429930 TCAGGGCTTGAGTAACACCA 58.570 50.000 0.00 0.0 0.00 4.17
275 276 2.152016 GGTTCAGGGCTTGAGTAACAC 58.848 52.381 0.00 0.0 37.07 3.32
334 335 2.587522 ACTTGGAAGCTTGGGTTCTTC 58.412 47.619 2.10 0.0 39.61 2.87
373 374 3.094572 CCCCGTCCACTTTAAGACTCTA 58.905 50.000 0.00 0.0 0.00 2.43
415 416 0.693622 TCGCTTATGTTTGGGTGGGA 59.306 50.000 0.00 0.0 0.00 4.37
440 441 4.002797 GCTCTTGCCGGATTTGGT 57.997 55.556 5.05 0.0 0.00 3.67
459 460 6.112734 CCAGTAATGGTGTACTATTTCTGCA 58.887 40.000 16.66 0.0 39.28 4.41
694 696 4.974645 TTGACTCAACAGTATTCAGGGT 57.025 40.909 0.00 0.0 30.63 4.34
700 702 5.930135 AGACAGGTTTGACTCAACAGTATT 58.070 37.500 0.00 0.0 30.63 1.89
701 703 5.552870 AGACAGGTTTGACTCAACAGTAT 57.447 39.130 0.00 0.0 30.63 2.12
702 704 5.353394 AAGACAGGTTTGACTCAACAGTA 57.647 39.130 0.00 0.0 30.63 2.74
703 705 3.914426 AGACAGGTTTGACTCAACAGT 57.086 42.857 0.00 0.0 34.57 3.55
759 761 0.976641 AGTAACTGCTACTGCTGCCA 59.023 50.000 0.00 0.0 39.52 4.92
785 787 2.719739 CTGCATGTCATTTCCACCTCT 58.280 47.619 0.00 0.0 0.00 3.69
1303 1317 2.439701 CGACTGGGAGCCGTCCTA 60.440 66.667 0.00 0.0 43.36 2.94
2123 2179 1.690352 GGCCCTTGATGCTGCAATATT 59.310 47.619 6.36 0.0 0.00 1.28
2223 2279 1.683025 CATCATTGCTGGCCCACCA 60.683 57.895 0.00 0.0 46.51 4.17
2957 3070 4.135153 CCTCCTGCACGGTCTCGG 62.135 72.222 2.68 0.0 41.39 4.63
3018 3131 1.513158 CACGAACTCGATGGAGCCT 59.487 57.895 6.05 0.0 44.48 4.58
3390 3503 4.166011 GACCGCGCTGTTGATGGC 62.166 66.667 5.77 0.0 0.00 4.40
3449 3562 1.321074 CCCTAGGCTTCGTCGGAACT 61.321 60.000 2.05 0.0 0.00 3.01
3454 3567 2.441532 TCCCCCTAGGCTTCGTCG 60.442 66.667 2.05 0.0 34.51 5.12
3455 3568 2.433146 GGTCCCCCTAGGCTTCGTC 61.433 68.421 2.05 0.0 34.51 4.20
3456 3569 2.365237 GGTCCCCCTAGGCTTCGT 60.365 66.667 2.05 0.0 34.51 3.85
3621 3734 1.554822 CCCCCTCAAACCTGTAGGAGA 60.555 57.143 4.64 0.0 38.94 3.71
4189 7568 1.074244 GGTGTTTAACCCAGGTGCCTA 59.926 52.381 0.00 0.0 44.02 3.93
4271 8366 5.932303 GCGCCCTCTATACTATGAATTTTGA 59.068 40.000 0.00 0.0 0.00 2.69
4484 9442 4.735369 TGTGTCACTCCATGGGTTTATTT 58.265 39.130 13.02 0.0 0.00 1.40
4531 9489 2.823747 GGGCTGTTCGGAATTTAGGTTT 59.176 45.455 0.00 0.0 0.00 3.27
4690 10241 1.103398 AAGGTTGTGCTGCTTCGCTT 61.103 50.000 0.00 0.0 0.00 4.68
4775 10581 1.202604 ACCTGTAATTATCCGGCGTGG 60.203 52.381 6.01 0.0 40.09 4.94
4825 10841 2.806577 CGTGATATCCGCTGCTGAG 58.193 57.895 0.00 0.0 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.