Multiple sequence alignment - TraesCS3B01G520000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G520000 chr3B 100.000 3415 0 0 1 3415 763238116 763234702 0.000000e+00 6307.0
1 TraesCS3B01G520000 chr3B 78.290 1322 205 47 1034 2309 763269810 763268525 0.000000e+00 776.0
2 TraesCS3B01G520000 chr3B 80.933 729 108 16 6 710 763249425 763248704 6.440000e-152 547.0
3 TraesCS3B01G520000 chr3B 87.683 341 32 5 2062 2400 766587623 766587291 4.130000e-104 388.0
4 TraesCS3B01G520000 chr3B 76.281 839 130 47 1482 2305 542134510 542133726 1.920000e-102 383.0
5 TraesCS3B01G520000 chr3B 88.110 328 28 6 2062 2388 766192698 766193015 2.490000e-101 379.0
6 TraesCS3B01G520000 chr3D 90.909 1496 80 18 931 2400 573906877 573908342 0.000000e+00 1958.0
7 TraesCS3B01G520000 chr3D 85.619 904 78 24 2535 3415 573908327 573909201 0.000000e+00 902.0
8 TraesCS3B01G520000 chr3D 78.852 1324 193 47 1034 2309 573844687 573845971 0.000000e+00 813.0
9 TraesCS3B01G520000 chr3D 83.019 954 80 22 6 934 573905755 573906651 0.000000e+00 789.0
10 TraesCS3B01G520000 chr3D 84.786 723 83 8 6 707 573896148 573896864 0.000000e+00 701.0
11 TraesCS3B01G520000 chr3D 88.270 341 30 7 2062 2400 575627436 575627104 1.910000e-107 399.0
12 TraesCS3B01G520000 chr3D 92.857 112 8 0 2403 2514 450238428 450238539 2.730000e-36 163.0
13 TraesCS3B01G520000 chr3D 90.598 117 11 0 6 122 573880136 573880252 4.560000e-34 156.0
14 TraesCS3B01G520000 chr3A 84.315 1409 137 35 6 1366 709042731 709044103 0.000000e+00 1301.0
15 TraesCS3B01G520000 chr3A 93.277 714 33 4 1443 2141 709061727 709062440 0.000000e+00 1038.0
16 TraesCS3B01G520000 chr3A 83.889 720 90 7 6 704 708981920 708982634 0.000000e+00 664.0
17 TraesCS3B01G520000 chr3A 79.775 890 125 33 1445 2309 708905861 708906720 2.270000e-166 595.0
18 TraesCS3B01G520000 chr3A 81.434 544 53 25 2534 3063 709062640 709063149 5.310000e-108 401.0
19 TraesCS3B01G520000 chr3A 91.126 293 22 2 3127 3415 709063173 709063465 8.880000e-106 394.0
20 TraesCS3B01G520000 chr3A 78.750 640 90 29 1695 2309 708920340 708920958 1.490000e-103 387.0
21 TraesCS3B01G520000 chr3A 84.352 409 49 9 6 411 708986362 708986758 1.490000e-103 387.0
22 TraesCS3B01G520000 chr3A 80.550 473 53 14 442 908 708986756 708987195 9.140000e-86 327.0
23 TraesCS3B01G520000 chr3A 87.500 280 29 3 6 279 708951458 708951737 5.500000e-83 318.0
24 TraesCS3B01G520000 chr3A 89.669 242 19 3 933 1173 709061233 709061469 1.540000e-78 303.0
25 TraesCS3B01G520000 chr3A 84.932 292 39 2 6 293 709044674 709044964 1.200000e-74 291.0
26 TraesCS3B01G520000 chr3A 86.636 217 23 4 2185 2400 709062445 709062656 5.700000e-58 235.0
27 TraesCS3B01G520000 chr3A 77.644 416 63 13 278 669 708974816 708975225 3.430000e-55 226.0
28 TraesCS3B01G520000 chr3A 88.830 188 8 6 1208 1394 709061458 709061633 5.740000e-53 219.0
29 TraesCS3B01G520000 chr3A 95.455 44 2 0 895 938 709061113 709061156 1.700000e-08 71.3
30 TraesCS3B01G520000 chr7B 86.188 181 21 4 3236 3415 79938211 79938388 3.480000e-45 193.0
31 TraesCS3B01G520000 chr7A 84.699 183 23 4 3236 3415 123143604 123143784 9.740000e-41 178.0
32 TraesCS3B01G520000 chr7A 93.750 112 7 0 2403 2514 660485294 660485405 5.860000e-38 169.0
33 TraesCS3B01G520000 chr5D 93.750 112 7 0 2403 2514 8060836 8060947 5.860000e-38 169.0
34 TraesCS3B01G520000 chr4A 93.750 112 7 0 2403 2514 533443734 533443623 5.860000e-38 169.0
35 TraesCS3B01G520000 chr2A 93.750 112 7 0 2403 2514 13918035 13918146 5.860000e-38 169.0
36 TraesCS3B01G520000 chr2A 93.750 112 7 0 2403 2514 734392823 734392934 5.860000e-38 169.0
37 TraesCS3B01G520000 chr6A 92.857 112 8 0 2403 2514 586995505 586995394 2.730000e-36 163.0
38 TraesCS3B01G520000 chr7D 87.179 117 12 3 3236 3351 119002280 119002394 2.770000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G520000 chr3B 763234702 763238116 3414 True 6307.000000 6307 100.000000 1 3415 1 chr3B.!!$R2 3414
1 TraesCS3B01G520000 chr3B 763268525 763269810 1285 True 776.000000 776 78.290000 1034 2309 1 chr3B.!!$R4 1275
2 TraesCS3B01G520000 chr3B 763248704 763249425 721 True 547.000000 547 80.933000 6 710 1 chr3B.!!$R3 704
3 TraesCS3B01G520000 chr3B 542133726 542134510 784 True 383.000000 383 76.281000 1482 2305 1 chr3B.!!$R1 823
4 TraesCS3B01G520000 chr3D 573905755 573909201 3446 False 1216.333333 1958 86.515667 6 3415 3 chr3D.!!$F5 3409
5 TraesCS3B01G520000 chr3D 573844687 573845971 1284 False 813.000000 813 78.852000 1034 2309 1 chr3D.!!$F2 1275
6 TraesCS3B01G520000 chr3D 573896148 573896864 716 False 701.000000 701 84.786000 6 707 1 chr3D.!!$F4 701
7 TraesCS3B01G520000 chr3A 709042731 709044964 2233 False 796.000000 1301 84.623500 6 1366 2 chr3A.!!$F6 1360
8 TraesCS3B01G520000 chr3A 708905861 708906720 859 False 595.000000 595 79.775000 1445 2309 1 chr3A.!!$F1 864
9 TraesCS3B01G520000 chr3A 708981920 708987195 5275 False 459.333333 664 82.930333 6 908 3 chr3A.!!$F5 902
10 TraesCS3B01G520000 chr3A 708920340 708920958 618 False 387.000000 387 78.750000 1695 2309 1 chr3A.!!$F2 614
11 TraesCS3B01G520000 chr3A 709061113 709063465 2352 False 380.185714 1038 89.489571 895 3415 7 chr3A.!!$F7 2520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 407 0.043053 CGCGAGCATGACATAAACGG 60.043 55.000 0.0 0.0 0.0 4.44 F
1674 6536 1.000506 GCACGACACCTTCTTCTACCA 59.999 52.381 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 7096 1.016130 CGTAGTTGACTGGCCTGCTG 61.016 60.0 9.95 0.0 0.0 4.41 R
2497 7470 0.378257 GTTCCGGACGACACGCTATA 59.622 55.0 1.83 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 7.388460 TCCAAAGTTTTTACGTTGGTCTTTA 57.612 32.000 18.05 1.61 45.28 1.85
109 110 0.964860 CCCATTCACACCATTCGCCA 60.965 55.000 0.00 0.00 0.00 5.69
126 127 2.346244 CGCCACATCACAATTTGCATTC 59.654 45.455 0.00 0.00 0.00 2.67
133 134 3.091545 TCACAATTTGCATTCCTCCCTC 58.908 45.455 0.00 0.00 0.00 4.30
189 194 7.960793 ACATACTTATGAGCTACGTGAAAAAC 58.039 34.615 0.00 0.00 37.15 2.43
200 205 1.329292 CGTGAAAAACAGAACAGGCGA 59.671 47.619 0.00 0.00 0.00 5.54
225 230 2.287608 GCGTCTTTTATAATGGGCAGGC 60.288 50.000 0.00 0.00 0.00 4.85
230 235 0.178964 TTATAATGGGCAGGCCAGGC 60.179 55.000 22.19 13.88 37.98 4.85
352 357 8.400947 AGGTATTTCGATTCATCTCAACATTTG 58.599 33.333 0.00 0.00 0.00 2.32
374 379 5.849510 TGAGGACTAAACATGTCGAAAAGA 58.150 37.500 0.00 0.00 35.45 2.52
392 398 0.110238 GAAAAAGCACGCGAGCATGA 60.110 50.000 29.45 0.00 36.85 3.07
396 402 0.460109 AAGCACGCGAGCATGACATA 60.460 50.000 29.45 0.00 36.85 2.29
401 407 0.043053 CGCGAGCATGACATAAACGG 60.043 55.000 0.00 0.00 0.00 4.44
423 429 3.357079 CGCCTTGTCCAGCACACC 61.357 66.667 0.00 0.00 33.41 4.16
455 476 1.676968 CAATCCTCACGGTGGACCA 59.323 57.895 8.50 0.00 36.30 4.02
467 488 3.003763 GGACCAGTCTTCGGCCCT 61.004 66.667 0.00 0.00 0.00 5.19
533 554 4.677584 TGAGTAGCAAACGCAAACATTTT 58.322 34.783 0.00 0.00 34.70 1.82
560 588 1.338579 GGGCATGCTATCAGTAGGCTC 60.339 57.143 18.92 0.00 37.74 4.70
577 606 4.473444 AGGCTCATCTTTTGAAAAGACCA 58.527 39.130 21.31 10.59 32.78 4.02
581 610 5.184671 GCTCATCTTTTGAAAAGACCATCCT 59.815 40.000 21.31 3.15 32.78 3.24
598 627 3.369381 CTGGTTATGAGCAGTCCGG 57.631 57.895 8.45 0.00 44.41 5.14
622 651 3.697619 ATGATGATCACCATGCGATCT 57.302 42.857 18.68 8.82 40.03 2.75
686 760 1.247567 CCGCAATTCCAACAGAACCT 58.752 50.000 0.00 0.00 37.29 3.50
738 5201 1.537776 CCAACGCCATTGCAACAAGAA 60.538 47.619 0.00 0.00 36.93 2.52
739 5202 2.406130 CAACGCCATTGCAACAAGAAT 58.594 42.857 0.00 0.00 37.32 2.40
741 5204 1.067635 ACGCCATTGCAACAAGAATCC 60.068 47.619 0.00 0.00 37.32 3.01
743 5206 2.613691 GCCATTGCAACAAGAATCCTG 58.386 47.619 0.00 0.00 37.47 3.86
771 5234 2.262572 GCAATAGAACCCTTGTTGCG 57.737 50.000 0.00 0.00 35.04 4.85
796 5259 4.425577 ACATCTTCGCCTTGTGATTTTC 57.574 40.909 0.00 0.00 0.00 2.29
797 5260 4.074970 ACATCTTCGCCTTGTGATTTTCT 58.925 39.130 0.00 0.00 0.00 2.52
800 5263 3.186409 TCTTCGCCTTGTGATTTTCTTCG 59.814 43.478 0.00 0.00 0.00 3.79
805 5268 2.293122 CCTTGTGATTTTCTTCGCCACA 59.707 45.455 0.00 0.00 36.15 4.17
827 5290 5.417580 ACAGCAAGAAGACCTTTGTTGTAAA 59.582 36.000 5.16 0.00 31.37 2.01
828 5291 6.096846 ACAGCAAGAAGACCTTTGTTGTAAAT 59.903 34.615 5.16 0.00 31.37 1.40
829 5292 6.980397 CAGCAAGAAGACCTTTGTTGTAAATT 59.020 34.615 0.00 0.00 31.42 1.82
830 5293 6.980397 AGCAAGAAGACCTTTGTTGTAAATTG 59.020 34.615 0.00 0.00 31.42 2.32
831 5294 6.756542 GCAAGAAGACCTTTGTTGTAAATTGT 59.243 34.615 0.00 0.00 31.42 2.71
832 5295 7.918562 GCAAGAAGACCTTTGTTGTAAATTGTA 59.081 33.333 0.00 0.00 31.42 2.41
833 5296 9.796120 CAAGAAGACCTTTGTTGTAAATTGTAA 57.204 29.630 0.00 0.00 31.42 2.41
835 5298 9.185680 AGAAGACCTTTGTTGTAAATTGTAAGT 57.814 29.630 0.00 0.00 0.00 2.24
836 5299 9.797556 GAAGACCTTTGTTGTAAATTGTAAGTT 57.202 29.630 0.00 0.00 0.00 2.66
838 5301 9.581099 AGACCTTTGTTGTAAATTGTAAGTTTG 57.419 29.630 0.00 0.00 0.00 2.93
839 5302 9.361315 GACCTTTGTTGTAAATTGTAAGTTTGT 57.639 29.630 0.00 0.00 0.00 2.83
854 5317 6.689241 TGTAAGTTTGTAACTGCAACAAATCG 59.311 34.615 16.04 0.00 45.62 3.34
934 5593 1.541147 AGCGTGACATGGACCAAAATG 59.459 47.619 0.00 0.00 0.00 2.32
1002 5745 1.689813 CCTACAAAACCCAAACCCCAC 59.310 52.381 0.00 0.00 0.00 4.61
1394 6197 4.111016 TCGTCGCCCAGCACTACG 62.111 66.667 0.00 0.00 32.71 3.51
1401 6225 1.003839 CCCAGCACTACGCCTTCAA 60.004 57.895 0.00 0.00 44.04 2.69
1549 6403 4.918201 GCGGGCCGGATCAAGGAG 62.918 72.222 29.48 0.00 0.00 3.69
1674 6536 1.000506 GCACGACACCTTCTTCTACCA 59.999 52.381 0.00 0.00 0.00 3.25
2030 6923 3.865929 CTGACGTTCAGCACCGCCT 62.866 63.158 0.00 0.00 37.72 5.52
2176 7075 3.485216 CGACAGCCATCGTTGGTATTTTC 60.485 47.826 13.90 3.75 45.57 2.29
2197 7096 1.373748 TAGTTGTTCGGCGGTCTGC 60.374 57.895 7.21 0.00 45.38 4.26
2230 7192 1.174783 ACTACGTGGACTTCATCGCT 58.825 50.000 5.70 0.00 0.00 4.93
2278 7240 2.049063 GAGCTCACAGGCGTCGTT 60.049 61.111 9.40 0.00 37.29 3.85
2315 7288 1.202498 TCGTCGATCCTTCGCTCTAGA 60.202 52.381 0.00 0.00 45.10 2.43
2325 7298 4.631813 TCCTTCGCTCTAGATTTTTGCTTC 59.368 41.667 0.00 0.00 0.00 3.86
2341 7314 9.817809 ATTTTTGCTTCTTCGTAGTCATAGATA 57.182 29.630 0.00 0.00 0.00 1.98
2350 7323 6.877611 TCGTAGTCATAGATATGTTCTGCA 57.122 37.500 0.03 0.00 35.79 4.41
2351 7324 6.903419 TCGTAGTCATAGATATGTTCTGCAG 58.097 40.000 7.63 7.63 35.79 4.41
2352 7325 6.072452 TCGTAGTCATAGATATGTTCTGCAGG 60.072 42.308 15.13 0.00 35.79 4.85
2374 7347 7.690301 GCAGGATCTAGATGGTAAATTTCTGGA 60.690 40.741 10.74 0.00 32.53 3.86
2375 7348 7.877097 CAGGATCTAGATGGTAAATTTCTGGAG 59.123 40.741 10.74 0.00 31.67 3.86
2376 7349 6.652900 GGATCTAGATGGTAAATTTCTGGAGC 59.347 42.308 10.74 0.00 34.03 4.70
2393 7366 6.283694 TCTGGAGCACTATTATGTGTCATTC 58.716 40.000 0.00 0.00 39.89 2.67
2396 7369 5.753438 GGAGCACTATTATGTGTCATTCGAA 59.247 40.000 0.00 0.00 39.89 3.71
2400 7373 8.982685 AGCACTATTATGTGTCATTCGAATAAG 58.017 33.333 10.97 0.00 39.89 1.73
2401 7374 8.765219 GCACTATTATGTGTCATTCGAATAAGT 58.235 33.333 10.97 0.00 39.89 2.24
2407 7380 9.863845 TTATGTGTCATTCGAATAAGTGAAGTA 57.136 29.630 10.97 0.00 0.00 2.24
2408 7381 7.576750 TGTGTCATTCGAATAAGTGAAGTAC 57.423 36.000 10.97 6.59 0.00 2.73
2409 7382 7.375834 TGTGTCATTCGAATAAGTGAAGTACT 58.624 34.615 10.97 0.00 42.89 2.73
2411 7384 8.373992 GTGTCATTCGAATAAGTGAAGTACTTC 58.626 37.037 25.73 25.73 46.55 3.01
2412 7385 8.085909 TGTCATTCGAATAAGTGAAGTACTTCA 58.914 33.333 30.07 30.07 46.55 3.02
2413 7386 8.587950 GTCATTCGAATAAGTGAAGTACTTCAG 58.412 37.037 33.36 21.31 46.55 3.02
2414 7387 7.759886 TCATTCGAATAAGTGAAGTACTTCAGG 59.240 37.037 33.36 17.98 46.55 3.86
2415 7388 5.962433 TCGAATAAGTGAAGTACTTCAGGG 58.038 41.667 33.36 18.55 46.55 4.45
2416 7389 5.713389 TCGAATAAGTGAAGTACTTCAGGGA 59.287 40.000 33.36 22.29 46.55 4.20
2417 7390 5.805994 CGAATAAGTGAAGTACTTCAGGGAC 59.194 44.000 33.36 22.77 46.55 4.46
2418 7391 3.662247 AAGTGAAGTACTTCAGGGACG 57.338 47.619 33.36 0.00 46.55 4.79
2419 7392 3.228453 AAGTGAAGTACTTCAGGGACGA 58.772 45.455 33.36 11.47 46.55 4.20
2420 7393 3.833070 AAGTGAAGTACTTCAGGGACGAT 59.167 43.478 33.36 15.78 46.55 3.73
2421 7394 3.868757 TGAAGTACTTCAGGGACGATG 57.131 47.619 30.07 0.00 43.90 3.84
2422 7395 3.162666 TGAAGTACTTCAGGGACGATGT 58.837 45.455 30.07 0.00 43.90 3.06
2423 7396 3.576982 TGAAGTACTTCAGGGACGATGTT 59.423 43.478 30.07 0.00 43.90 2.71
2424 7397 3.870633 AGTACTTCAGGGACGATGTTC 57.129 47.619 0.00 0.00 0.00 3.18
2425 7398 2.163815 AGTACTTCAGGGACGATGTTCG 59.836 50.000 0.00 0.00 46.93 3.95
2426 7399 0.246635 ACTTCAGGGACGATGTTCGG 59.753 55.000 1.69 0.00 45.59 4.30
2432 7405 3.782042 GACGATGTTCGGCTGGAC 58.218 61.111 0.00 0.00 46.20 4.02
2433 7406 2.126071 ACGATGTTCGGCTGGACG 60.126 61.111 0.00 0.00 45.59 4.79
2434 7407 2.180769 CGATGTTCGGCTGGACGA 59.819 61.111 0.00 0.00 41.76 4.20
2435 7408 2.158959 CGATGTTCGGCTGGACGAC 61.159 63.158 0.00 0.00 43.37 4.34
2436 7409 1.080093 GATGTTCGGCTGGACGACA 60.080 57.895 0.00 1.02 43.37 4.35
2437 7410 1.352156 GATGTTCGGCTGGACGACAC 61.352 60.000 0.00 1.58 43.37 3.67
2438 7411 1.816863 ATGTTCGGCTGGACGACACT 61.817 55.000 0.00 0.00 43.37 3.55
2439 7412 1.733399 GTTCGGCTGGACGACACTC 60.733 63.158 0.00 0.00 43.37 3.51
2440 7413 2.197605 TTCGGCTGGACGACACTCA 61.198 57.895 0.00 0.00 43.37 3.41
2441 7414 2.416244 TTCGGCTGGACGACACTCAC 62.416 60.000 0.00 0.00 43.37 3.51
2442 7415 2.048127 GGCTGGACGACACTCACC 60.048 66.667 0.00 0.00 0.00 4.02
2443 7416 2.574955 GGCTGGACGACACTCACCT 61.575 63.158 0.00 0.00 0.00 4.00
2444 7417 1.373497 GCTGGACGACACTCACCTG 60.373 63.158 0.00 0.00 0.00 4.00
2445 7418 1.806461 GCTGGACGACACTCACCTGA 61.806 60.000 0.00 0.00 0.00 3.86
2446 7419 0.039074 CTGGACGACACTCACCTGAC 60.039 60.000 0.00 0.00 0.00 3.51
2447 7420 1.081376 GGACGACACTCACCTGACG 60.081 63.158 0.00 0.00 35.77 4.35
2448 7421 1.081376 GACGACACTCACCTGACGG 60.081 63.158 0.00 0.00 34.26 4.79
2449 7422 2.430921 CGACACTCACCTGACGGC 60.431 66.667 0.00 0.00 0.00 5.68
2450 7423 2.920645 CGACACTCACCTGACGGCT 61.921 63.158 0.00 0.00 0.00 5.52
2451 7424 1.373497 GACACTCACCTGACGGCTG 60.373 63.158 0.00 0.00 0.00 4.85
2452 7425 1.806461 GACACTCACCTGACGGCTGA 61.806 60.000 0.00 0.00 0.00 4.26
2453 7426 1.188219 ACACTCACCTGACGGCTGAT 61.188 55.000 0.00 0.00 0.00 2.90
2454 7427 0.459237 CACTCACCTGACGGCTGATC 60.459 60.000 0.00 0.00 0.00 2.92
2455 7428 0.900182 ACTCACCTGACGGCTGATCA 60.900 55.000 0.00 0.00 0.00 2.92
2456 7429 0.247460 CTCACCTGACGGCTGATCAA 59.753 55.000 0.00 0.00 0.00 2.57
2457 7430 0.684535 TCACCTGACGGCTGATCAAA 59.315 50.000 0.00 0.00 0.00 2.69
2458 7431 0.798776 CACCTGACGGCTGATCAAAC 59.201 55.000 0.00 0.00 0.00 2.93
2459 7432 0.321653 ACCTGACGGCTGATCAAACC 60.322 55.000 0.00 0.12 0.00 3.27
2465 7438 0.304705 CGGCTGATCAAACCGTATGC 59.695 55.000 22.65 9.21 42.01 3.14
2466 7439 1.668419 GGCTGATCAAACCGTATGCT 58.332 50.000 0.00 0.00 0.00 3.79
2467 7440 2.801699 CGGCTGATCAAACCGTATGCTA 60.802 50.000 22.65 0.00 42.01 3.49
2468 7441 2.544267 GGCTGATCAAACCGTATGCTAC 59.456 50.000 0.00 0.00 0.00 3.58
2481 7454 2.295253 ATGCTACGGTGTAGACTTGC 57.705 50.000 8.11 0.00 0.00 4.01
2482 7455 0.245539 TGCTACGGTGTAGACTTGCC 59.754 55.000 8.11 0.00 0.00 4.52
2483 7456 0.459759 GCTACGGTGTAGACTTGCCC 60.460 60.000 8.11 0.00 0.00 5.36
2484 7457 0.892755 CTACGGTGTAGACTTGCCCA 59.107 55.000 0.00 0.00 0.00 5.36
2485 7458 0.604578 TACGGTGTAGACTTGCCCAC 59.395 55.000 0.00 0.00 0.00 4.61
2486 7459 1.736645 CGGTGTAGACTTGCCCACG 60.737 63.158 0.00 0.00 0.00 4.94
2487 7460 1.375523 GGTGTAGACTTGCCCACGG 60.376 63.158 0.00 0.00 0.00 4.94
2488 7461 1.669440 GTGTAGACTTGCCCACGGA 59.331 57.895 0.00 0.00 0.00 4.69
2489 7462 0.249398 GTGTAGACTTGCCCACGGAT 59.751 55.000 0.00 0.00 0.00 4.18
2490 7463 0.981183 TGTAGACTTGCCCACGGATT 59.019 50.000 0.00 0.00 0.00 3.01
2491 7464 1.338674 TGTAGACTTGCCCACGGATTG 60.339 52.381 0.00 0.00 0.00 2.67
2492 7465 0.981183 TAGACTTGCCCACGGATTGT 59.019 50.000 0.00 0.00 0.00 2.71
2493 7466 0.110486 AGACTTGCCCACGGATTGTT 59.890 50.000 0.00 0.00 0.00 2.83
2494 7467 1.349688 AGACTTGCCCACGGATTGTTA 59.650 47.619 0.00 0.00 0.00 2.41
2495 7468 1.737793 GACTTGCCCACGGATTGTTAG 59.262 52.381 0.00 0.00 0.00 2.34
2496 7469 1.349688 ACTTGCCCACGGATTGTTAGA 59.650 47.619 0.00 0.00 0.00 2.10
2497 7470 2.026262 ACTTGCCCACGGATTGTTAGAT 60.026 45.455 0.00 0.00 0.00 1.98
2498 7471 3.199071 ACTTGCCCACGGATTGTTAGATA 59.801 43.478 0.00 0.00 0.00 1.98
2499 7472 4.141482 ACTTGCCCACGGATTGTTAGATAT 60.141 41.667 0.00 0.00 0.00 1.63
2500 7473 5.071250 ACTTGCCCACGGATTGTTAGATATA 59.929 40.000 0.00 0.00 0.00 0.86
2501 7474 5.147330 TGCCCACGGATTGTTAGATATAG 57.853 43.478 0.00 0.00 0.00 1.31
2502 7475 3.933332 GCCCACGGATTGTTAGATATAGC 59.067 47.826 0.00 0.00 0.00 2.97
2503 7476 4.174009 CCCACGGATTGTTAGATATAGCG 58.826 47.826 0.00 0.00 0.00 4.26
2504 7477 4.321750 CCCACGGATTGTTAGATATAGCGT 60.322 45.833 0.00 0.00 0.00 5.07
2505 7478 4.621460 CCACGGATTGTTAGATATAGCGTG 59.379 45.833 0.00 0.00 0.00 5.34
2506 7479 5.220381 CACGGATTGTTAGATATAGCGTGT 58.780 41.667 0.00 0.00 0.00 4.49
2507 7480 5.342525 CACGGATTGTTAGATATAGCGTGTC 59.657 44.000 0.00 0.00 0.00 3.67
2508 7481 4.553815 CGGATTGTTAGATATAGCGTGTCG 59.446 45.833 0.00 0.00 0.00 4.35
2509 7482 5.458891 GGATTGTTAGATATAGCGTGTCGT 58.541 41.667 0.00 0.00 0.00 4.34
2510 7483 5.568296 GGATTGTTAGATATAGCGTGTCGTC 59.432 44.000 0.00 0.00 0.00 4.20
2511 7484 4.478843 TGTTAGATATAGCGTGTCGTCC 57.521 45.455 0.00 0.00 0.00 4.79
2512 7485 3.059393 TGTTAGATATAGCGTGTCGTCCG 60.059 47.826 0.00 0.00 0.00 4.79
2513 7486 0.873054 AGATATAGCGTGTCGTCCGG 59.127 55.000 0.00 0.00 0.00 5.14
2514 7487 0.870393 GATATAGCGTGTCGTCCGGA 59.130 55.000 0.00 0.00 0.00 5.14
2515 7488 1.265095 GATATAGCGTGTCGTCCGGAA 59.735 52.381 5.23 0.00 0.00 4.30
2516 7489 0.378257 TATAGCGTGTCGTCCGGAAC 59.622 55.000 5.23 1.46 0.00 3.62
2517 7490 1.310933 ATAGCGTGTCGTCCGGAACT 61.311 55.000 5.23 0.00 0.00 3.01
2518 7491 2.191354 TAGCGTGTCGTCCGGAACTG 62.191 60.000 5.23 0.00 0.00 3.16
2519 7492 2.333938 CGTGTCGTCCGGAACTGT 59.666 61.111 5.23 0.00 0.00 3.55
2520 7493 1.728426 CGTGTCGTCCGGAACTGTC 60.728 63.158 5.23 0.00 0.00 3.51
2521 7494 1.728426 GTGTCGTCCGGAACTGTCG 60.728 63.158 5.23 5.16 0.00 4.35
2522 7495 2.188829 TGTCGTCCGGAACTGTCGT 61.189 57.895 5.23 0.00 0.00 4.34
2523 7496 1.441682 GTCGTCCGGAACTGTCGTC 60.442 63.158 5.23 0.00 0.00 4.20
2524 7497 2.126580 CGTCCGGAACTGTCGTCC 60.127 66.667 5.23 0.00 0.00 4.79
2525 7498 2.911484 CGTCCGGAACTGTCGTCCA 61.911 63.158 5.23 0.00 0.00 4.02
2526 7499 1.590147 GTCCGGAACTGTCGTCCAT 59.410 57.895 5.23 0.00 0.00 3.41
2527 7500 0.458025 GTCCGGAACTGTCGTCCATC 60.458 60.000 5.23 0.00 0.00 3.51
2528 7501 0.611062 TCCGGAACTGTCGTCCATCT 60.611 55.000 0.00 0.00 0.00 2.90
2529 7502 1.100510 CCGGAACTGTCGTCCATCTA 58.899 55.000 0.00 0.00 0.00 1.98
2530 7503 1.065701 CCGGAACTGTCGTCCATCTAG 59.934 57.143 0.00 0.00 0.00 2.43
2531 7504 1.534175 CGGAACTGTCGTCCATCTAGC 60.534 57.143 0.00 0.00 0.00 3.42
2532 7505 1.476891 GGAACTGTCGTCCATCTAGCA 59.523 52.381 0.00 0.00 0.00 3.49
2533 7506 2.094182 GGAACTGTCGTCCATCTAGCAA 60.094 50.000 0.00 0.00 0.00 3.91
2534 7507 3.430929 GGAACTGTCGTCCATCTAGCAAT 60.431 47.826 0.00 0.00 0.00 3.56
2535 7508 3.170791 ACTGTCGTCCATCTAGCAATG 57.829 47.619 0.00 0.00 0.00 2.82
2536 7509 2.497675 ACTGTCGTCCATCTAGCAATGT 59.502 45.455 0.00 0.00 0.00 2.71
2537 7510 3.055819 ACTGTCGTCCATCTAGCAATGTT 60.056 43.478 0.00 0.00 0.00 2.71
2538 7511 3.521560 TGTCGTCCATCTAGCAATGTTC 58.478 45.455 0.00 0.00 0.00 3.18
2539 7512 3.195610 TGTCGTCCATCTAGCAATGTTCT 59.804 43.478 0.00 0.00 0.00 3.01
2540 7513 4.184629 GTCGTCCATCTAGCAATGTTCTT 58.815 43.478 0.00 0.00 0.00 2.52
2541 7514 4.268884 GTCGTCCATCTAGCAATGTTCTTC 59.731 45.833 0.00 0.00 0.00 2.87
2542 7515 3.243877 CGTCCATCTAGCAATGTTCTTCG 59.756 47.826 0.00 0.00 0.00 3.79
2543 7516 4.433615 GTCCATCTAGCAATGTTCTTCGA 58.566 43.478 0.00 0.00 0.00 3.71
2544 7517 4.870426 GTCCATCTAGCAATGTTCTTCGAA 59.130 41.667 0.00 0.00 0.00 3.71
2545 7518 5.525378 GTCCATCTAGCAATGTTCTTCGAAT 59.475 40.000 0.00 0.00 0.00 3.34
2546 7519 6.701841 GTCCATCTAGCAATGTTCTTCGAATA 59.298 38.462 0.00 0.00 0.00 1.75
2547 7520 7.224753 GTCCATCTAGCAATGTTCTTCGAATAA 59.775 37.037 0.00 0.00 0.00 1.40
2548 7521 7.933577 TCCATCTAGCAATGTTCTTCGAATAAT 59.066 33.333 0.00 0.00 0.00 1.28
2549 7522 8.013947 CCATCTAGCAATGTTCTTCGAATAATG 58.986 37.037 0.00 0.00 0.00 1.90
2550 7523 8.554528 CATCTAGCAATGTTCTTCGAATAATGT 58.445 33.333 0.00 0.00 0.00 2.71
2551 7524 7.909267 TCTAGCAATGTTCTTCGAATAATGTG 58.091 34.615 0.00 0.00 0.00 3.21
2552 7525 6.500684 AGCAATGTTCTTCGAATAATGTGT 57.499 33.333 0.00 0.00 0.00 3.72
2553 7526 6.913170 AGCAATGTTCTTCGAATAATGTGTT 58.087 32.000 0.00 0.00 0.00 3.32
2554 7527 7.370383 AGCAATGTTCTTCGAATAATGTGTTT 58.630 30.769 0.00 0.00 0.00 2.83
2555 7528 7.867403 AGCAATGTTCTTCGAATAATGTGTTTT 59.133 29.630 0.00 0.00 0.00 2.43
2556 7529 8.155923 GCAATGTTCTTCGAATAATGTGTTTTC 58.844 33.333 0.00 0.00 0.00 2.29
2568 7541 9.487790 GAATAATGTGTTTTCAAAGATTTGGGA 57.512 29.630 5.52 0.00 38.66 4.37
2606 7579 3.190079 CACAATGTATCAGACCTGACCG 58.810 50.000 1.31 0.00 43.11 4.79
2609 7582 4.464951 ACAATGTATCAGACCTGACCGTTA 59.535 41.667 1.31 0.00 43.11 3.18
2610 7583 5.128827 ACAATGTATCAGACCTGACCGTTAT 59.871 40.000 1.31 0.00 43.11 1.89
2619 7592 5.025453 AGACCTGACCGTTATAAGGGTTTA 58.975 41.667 26.26 18.39 46.35 2.01
2621 7594 6.013466 AGACCTGACCGTTATAAGGGTTTAAA 60.013 38.462 26.26 14.03 46.35 1.52
2647 7620 3.391506 TCAGCAGGGATGAATCATACG 57.608 47.619 0.00 0.00 0.00 3.06
2648 7621 2.965147 TCAGCAGGGATGAATCATACGA 59.035 45.455 0.00 0.00 0.00 3.43
2649 7622 3.387699 TCAGCAGGGATGAATCATACGAA 59.612 43.478 0.00 0.00 0.00 3.85
2652 7625 4.040829 AGCAGGGATGAATCATACGAATCA 59.959 41.667 0.00 0.00 35.55 2.57
2653 7626 4.940046 GCAGGGATGAATCATACGAATCAT 59.060 41.667 0.00 0.00 43.14 2.45
2654 7627 6.070596 AGCAGGGATGAATCATACGAATCATA 60.071 38.462 0.00 0.00 41.02 2.15
2655 7628 6.036517 GCAGGGATGAATCATACGAATCATAC 59.963 42.308 0.00 0.00 41.02 2.39
2656 7629 7.099120 CAGGGATGAATCATACGAATCATACA 58.901 38.462 1.73 0.00 42.24 2.29
2657 7630 7.767659 CAGGGATGAATCATACGAATCATACAT 59.232 37.037 1.73 0.00 42.24 2.29
2658 7631 7.984050 AGGGATGAATCATACGAATCATACATC 59.016 37.037 1.73 0.00 42.24 3.06
2659 7632 7.984050 GGGATGAATCATACGAATCATACATCT 59.016 37.037 1.73 0.00 42.24 2.90
2702 7675 7.607250 AGTTACATTCTCTCGATAATCCATCC 58.393 38.462 0.00 0.00 0.00 3.51
2705 7678 4.873746 TTCTCTCGATAATCCATCCACC 57.126 45.455 0.00 0.00 0.00 4.61
2706 7679 3.165875 TCTCTCGATAATCCATCCACCC 58.834 50.000 0.00 0.00 0.00 4.61
2727 7700 7.067008 CCACCCACTACTAACCAAATGATAAAG 59.933 40.741 0.00 0.00 0.00 1.85
2728 7701 7.610305 CACCCACTACTAACCAAATGATAAAGT 59.390 37.037 0.00 0.00 0.00 2.66
2730 7703 9.326413 CCCACTACTAACCAAATGATAAAGTAG 57.674 37.037 0.00 0.00 40.34 2.57
2756 7729 4.017808 TCTAGGTTCTCCTTGCAGAGTAC 58.982 47.826 3.17 3.98 42.12 2.73
2757 7730 2.896039 AGGTTCTCCTTGCAGAGTACT 58.104 47.619 10.98 0.00 42.12 2.73
2758 7731 2.564947 AGGTTCTCCTTGCAGAGTACTG 59.435 50.000 0.00 0.00 42.12 2.74
2759 7732 2.300437 GGTTCTCCTTGCAGAGTACTGT 59.700 50.000 0.00 0.00 45.04 3.55
2784 7757 9.360093 GTAGAATGATATCCGATTGTCCTAAAG 57.640 37.037 0.00 0.00 0.00 1.85
2794 7772 5.105473 CCGATTGTCCTAAAGAGAGGTACAA 60.105 44.000 0.00 8.76 39.14 2.41
2806 7784 4.218852 AGAGAGGTACAAGCTACAACAGAC 59.781 45.833 0.00 0.00 0.00 3.51
2809 7787 3.064931 GGTACAAGCTACAACAGACCAC 58.935 50.000 0.00 0.00 0.00 4.16
2845 7823 3.436700 GTGAACACCAAAGAAACAGGG 57.563 47.619 0.00 0.00 0.00 4.45
2852 7830 4.901250 ACACCAAAGAAACAGGGATCAAAT 59.099 37.500 0.00 0.00 0.00 2.32
2867 7846 6.825721 AGGGATCAAATAGATGTCACAGAAAC 59.174 38.462 0.00 0.00 37.00 2.78
2879 7858 1.462283 CACAGAAACGAGCATGTCCAG 59.538 52.381 0.00 0.00 0.00 3.86
2901 7880 4.339814 AGTCTCTTGAGTTACGATCATCCC 59.660 45.833 0.00 0.00 0.00 3.85
2911 7894 2.775890 ACGATCATCCCTCAATCATGC 58.224 47.619 0.00 0.00 0.00 4.06
2913 7896 2.444421 GATCATCCCTCAATCATGCCC 58.556 52.381 0.00 0.00 0.00 5.36
2914 7897 1.224436 TCATCCCTCAATCATGCCCA 58.776 50.000 0.00 0.00 0.00 5.36
2933 7927 2.625737 CATCTGTCCATGAGGTGTCAC 58.374 52.381 0.00 0.00 34.75 3.67
2940 7934 2.644299 TCCATGAGGTGTCACTTGGATT 59.356 45.455 2.35 0.00 34.58 3.01
2942 7936 3.307975 CCATGAGGTGTCACTTGGATTCT 60.308 47.826 2.35 0.00 34.75 2.40
2944 7938 2.972021 TGAGGTGTCACTTGGATTCTGA 59.028 45.455 2.35 0.00 0.00 3.27
2956 7950 8.206867 TCACTTGGATTCTGATAGAGGTTAATG 58.793 37.037 0.00 0.00 0.00 1.90
2968 7962 8.822805 TGATAGAGGTTAATGAAGTGGTACTTT 58.177 33.333 0.00 0.00 38.80 2.66
3034 8028 4.924305 TCAGTAACAACGTTACTCCTGT 57.076 40.909 14.93 0.00 33.30 4.00
3058 8052 6.262049 GTCAAAACCAAAAGGGCAAACATTAT 59.738 34.615 0.00 0.00 42.05 1.28
3059 8053 6.830838 TCAAAACCAAAAGGGCAAACATTATT 59.169 30.769 0.00 0.00 42.05 1.40
3060 8054 6.875948 AAACCAAAAGGGCAAACATTATTC 57.124 33.333 0.00 0.00 42.05 1.75
3061 8055 5.559148 ACCAAAAGGGCAAACATTATTCA 57.441 34.783 0.00 0.00 42.05 2.57
3062 8056 5.550290 ACCAAAAGGGCAAACATTATTCAG 58.450 37.500 0.00 0.00 42.05 3.02
3063 8057 5.306678 ACCAAAAGGGCAAACATTATTCAGA 59.693 36.000 0.00 0.00 42.05 3.27
3064 8058 6.013466 ACCAAAAGGGCAAACATTATTCAGAT 60.013 34.615 0.00 0.00 42.05 2.90
3096 8091 6.879276 CATCAAATGCTGAATAGATGACCT 57.121 37.500 5.47 0.00 37.67 3.85
3112 8107 3.728845 TGACCTGGAAGAAGTTTTCTCG 58.271 45.455 0.00 0.00 39.61 4.04
3114 8109 1.807142 CCTGGAAGAAGTTTTCTCGGC 59.193 52.381 0.00 0.00 39.61 5.54
3116 8111 3.077359 CTGGAAGAAGTTTTCTCGGCAT 58.923 45.455 0.00 0.00 39.61 4.40
3136 8131 5.170748 GCATAATTGGCAAAACACTAGCTT 58.829 37.500 3.01 0.00 0.00 3.74
3138 8133 6.811170 GCATAATTGGCAAAACACTAGCTTTA 59.189 34.615 3.01 0.00 0.00 1.85
3139 8134 7.330700 GCATAATTGGCAAAACACTAGCTTTAA 59.669 33.333 3.01 0.00 0.00 1.52
3147 8142 7.114953 GGCAAAACACTAGCTTTAATTCACTTC 59.885 37.037 0.00 0.00 0.00 3.01
3193 8192 9.878599 CAACATCGTTTTAAGTAGATGAAAACT 57.121 29.630 17.31 0.00 42.04 2.66
3198 8197 7.172019 TCGTTTTAAGTAGATGAAAACTGGACC 59.828 37.037 7.59 0.00 39.70 4.46
3216 8215 1.168714 CCAACCTTCCACTAAGCTGC 58.831 55.000 0.00 0.00 33.49 5.25
3219 8218 2.109126 CCTTCCACTAAGCTGCGGC 61.109 63.158 10.33 10.33 33.49 6.53
3282 8281 4.748144 GCTGACTGGGCCCTTGGG 62.748 72.222 25.70 12.91 0.00 4.12
3294 8293 2.294979 GCCCTTGGGAATTTACTACGG 58.705 52.381 10.36 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.013379 TGTGGAAACAAATCATCTCCTAGAGT 60.013 38.462 0.00 0.00 46.06 3.24
109 110 3.196254 GGGAGGAATGCAAATTGTGATGT 59.804 43.478 0.00 0.00 0.00 3.06
126 127 1.546773 CCACGGATAGAGAGAGGGAGG 60.547 61.905 0.00 0.00 0.00 4.30
133 134 0.105039 GCCAACCCACGGATAGAGAG 59.895 60.000 0.00 0.00 0.00 3.20
189 194 0.179215 GACGCATTTCGCCTGTTCTG 60.179 55.000 0.00 0.00 43.23 3.02
200 205 5.451798 CCTGCCCATTATAAAAGACGCATTT 60.452 40.000 0.00 0.00 0.00 2.32
225 230 3.365265 GTTCCAAGCGTGGCCTGG 61.365 66.667 14.54 2.23 45.54 4.45
238 243 1.903404 CACCAACCTGCCCTGTTCC 60.903 63.158 0.00 0.00 0.00 3.62
279 284 9.915629 CTACTAGACTTTATGTGTATGGATTCC 57.084 37.037 0.00 0.00 0.00 3.01
352 357 6.780706 TTCTTTTCGACATGTTTAGTCCTC 57.219 37.500 0.00 0.00 32.41 3.71
355 360 7.431084 TGCTTTTTCTTTTCGACATGTTTAGTC 59.569 33.333 0.00 0.00 0.00 2.59
366 371 1.328069 TCGCGTGCTTTTTCTTTTCGA 59.672 42.857 5.77 0.00 0.00 3.71
374 379 0.385974 GTCATGCTCGCGTGCTTTTT 60.386 50.000 30.29 12.48 33.28 1.94
392 398 0.891904 AAGGCGCAACCCGTTTATGT 60.892 50.000 10.83 0.00 40.58 2.29
396 402 2.831284 ACAAGGCGCAACCCGTTT 60.831 55.556 10.83 0.00 40.58 3.60
401 407 4.043200 GCTGGACAAGGCGCAACC 62.043 66.667 10.83 5.15 39.61 3.77
455 476 1.056660 TTGAGAAAGGGCCGAAGACT 58.943 50.000 0.00 0.00 0.00 3.24
467 488 6.460781 TCTGCCGTTAGTAGATTTTGAGAAA 58.539 36.000 0.00 0.00 31.48 2.52
501 522 3.435327 CGTTTGCTACTCATTAGGCACAA 59.565 43.478 0.00 0.00 34.30 3.33
533 554 4.235079 ACTGATAGCATGCCCTACAAAA 57.765 40.909 15.66 0.00 0.00 2.44
537 558 2.354203 GCCTACTGATAGCATGCCCTAC 60.354 54.545 15.66 4.45 0.00 3.18
539 560 0.689623 GCCTACTGATAGCATGCCCT 59.310 55.000 15.66 0.70 0.00 5.19
547 568 8.498054 TTTTCAAAAGATGAGCCTACTGATAG 57.502 34.615 0.00 0.00 39.77 2.08
548 569 8.321353 TCTTTTCAAAAGATGAGCCTACTGATA 58.679 33.333 8.60 0.00 39.77 2.15
549 570 7.120432 GTCTTTTCAAAAGATGAGCCTACTGAT 59.880 37.037 15.67 0.00 39.77 2.90
552 580 5.707764 GGTCTTTTCAAAAGATGAGCCTACT 59.292 40.000 15.67 0.00 39.77 2.57
577 606 1.414181 CGGACTGCTCATAACCAGGAT 59.586 52.381 0.00 0.00 33.43 3.24
581 610 0.535335 GACCGGACTGCTCATAACCA 59.465 55.000 9.46 0.00 0.00 3.67
598 627 2.874086 TCGCATGGTGATCATCATTGAC 59.126 45.455 19.04 10.46 33.85 3.18
771 5234 3.896648 TCACAAGGCGAAGATGTTTTC 57.103 42.857 0.00 0.00 0.00 2.29
787 5250 1.266718 GCTGTGGCGAAGAAAATCACA 59.733 47.619 0.00 0.00 36.94 3.58
796 5259 0.514691 GTCTTCTTGCTGTGGCGAAG 59.485 55.000 0.00 0.00 42.25 3.79
797 5260 0.884704 GGTCTTCTTGCTGTGGCGAA 60.885 55.000 0.00 0.00 42.25 4.70
800 5263 1.000938 CAAAGGTCTTCTTGCTGTGGC 60.001 52.381 0.00 0.00 35.55 5.01
805 5268 6.715347 ATTTACAACAAAGGTCTTCTTGCT 57.285 33.333 0.00 0.00 35.55 3.91
827 5290 8.940768 ATTTGTTGCAGTTACAAACTTACAAT 57.059 26.923 15.47 0.00 45.23 2.71
828 5291 7.219154 CGATTTGTTGCAGTTACAAACTTACAA 59.781 33.333 15.47 3.11 45.23 2.41
829 5292 6.689241 CGATTTGTTGCAGTTACAAACTTACA 59.311 34.615 15.47 0.00 45.23 2.41
830 5293 6.689669 ACGATTTGTTGCAGTTACAAACTTAC 59.310 34.615 15.47 8.27 45.23 2.34
831 5294 6.787225 ACGATTTGTTGCAGTTACAAACTTA 58.213 32.000 15.47 0.00 45.23 2.24
832 5295 5.646606 ACGATTTGTTGCAGTTACAAACTT 58.353 33.333 15.47 3.40 45.23 2.66
833 5296 5.243426 ACGATTTGTTGCAGTTACAAACT 57.757 34.783 15.47 7.07 45.23 2.66
834 5297 6.196571 ACTACGATTTGTTGCAGTTACAAAC 58.803 36.000 15.47 9.80 45.23 2.93
835 5298 6.366315 ACTACGATTTGTTGCAGTTACAAA 57.634 33.333 15.49 15.49 46.12 2.83
836 5299 5.994887 ACTACGATTTGTTGCAGTTACAA 57.005 34.783 0.00 0.00 33.92 2.41
837 5300 5.049954 GGAACTACGATTTGTTGCAGTTACA 60.050 40.000 0.00 0.00 30.78 2.41
838 5301 5.178809 AGGAACTACGATTTGTTGCAGTTAC 59.821 40.000 0.00 0.00 36.02 2.50
839 5302 5.302360 AGGAACTACGATTTGTTGCAGTTA 58.698 37.500 0.00 0.00 36.02 2.24
840 5303 4.134563 AGGAACTACGATTTGTTGCAGTT 58.865 39.130 0.00 0.00 36.02 3.16
841 5304 3.740115 AGGAACTACGATTTGTTGCAGT 58.260 40.909 0.00 0.00 36.02 4.40
842 5305 4.749245 AAGGAACTACGATTTGTTGCAG 57.251 40.909 0.00 0.00 38.49 4.41
854 5317 7.987750 ATGGAAAGAAGAGAAAAGGAACTAC 57.012 36.000 0.00 0.00 38.49 2.73
962 5703 3.894947 GGGTGGCGCGTGTGTTTT 61.895 61.111 8.43 0.00 0.00 2.43
1018 5761 1.047801 GCTCCATGGTGGGTTTGTTT 58.952 50.000 12.58 0.00 38.32 2.83
1019 5762 0.188342 AGCTCCATGGTGGGTTTGTT 59.812 50.000 12.58 0.00 38.32 2.83
1184 5987 3.869272 CTCGTTGAGCATGGCGCC 61.869 66.667 22.73 22.73 44.04 6.53
1185 5988 2.098842 GATCTCGTTGAGCATGGCGC 62.099 60.000 0.00 0.00 42.91 6.53
1300 6103 3.842925 GAACTGCACCTTCGGCCCA 62.843 63.158 0.00 0.00 0.00 5.36
1394 6197 3.572255 TGAGTTACCATGGTTTTGAAGGC 59.428 43.478 25.38 6.46 0.00 4.35
1603 6465 1.546476 CAGACGCCCTTGAAGTAGAGT 59.454 52.381 0.00 0.00 0.00 3.24
1726 6588 2.202743 GCGATGTACTGCCGCTCA 60.203 61.111 15.91 0.00 44.83 4.26
1820 6698 1.136147 CGTTCGGGAGGTAGACGTG 59.864 63.158 0.00 0.00 0.00 4.49
1858 6747 3.823330 GCCAGCCTGTGCAGCATC 61.823 66.667 0.00 0.00 41.13 3.91
1937 6827 3.030291 TGAACTTTGGCACCTTGAATGT 58.970 40.909 0.00 0.00 0.00 2.71
1939 6829 3.733443 GTGAACTTTGGCACCTTGAAT 57.267 42.857 0.00 0.00 0.00 2.57
2043 6936 1.686052 TGTGTTCCAAATCCAGCAACC 59.314 47.619 0.00 0.00 0.00 3.77
2176 7075 2.048877 ACCGCCGAACAACTACCG 60.049 61.111 0.00 0.00 0.00 4.02
2197 7096 1.016130 CGTAGTTGACTGGCCTGCTG 61.016 60.000 9.95 0.00 0.00 4.41
2230 7192 1.444933 AGAACATGAAGGGGTGGTCA 58.555 50.000 0.00 0.00 34.52 4.02
2278 7240 4.555709 ACTTGGCCGGCGAACACA 62.556 61.111 20.90 9.22 0.00 3.72
2315 7288 8.723942 ATCTATGACTACGAAGAAGCAAAAAT 57.276 30.769 0.00 0.00 0.00 1.82
2325 7298 7.363431 TGCAGAACATATCTATGACTACGAAG 58.637 38.462 4.26 0.00 36.32 3.79
2341 7314 3.972638 ACCATCTAGATCCTGCAGAACAT 59.027 43.478 17.39 3.67 0.00 2.71
2350 7323 7.474079 GCTCCAGAAATTTACCATCTAGATCCT 60.474 40.741 1.03 0.00 0.00 3.24
2351 7324 6.652900 GCTCCAGAAATTTACCATCTAGATCC 59.347 42.308 1.03 0.00 0.00 3.36
2352 7325 7.172361 GTGCTCCAGAAATTTACCATCTAGATC 59.828 40.741 1.03 0.00 0.00 2.75
2374 7347 8.887036 TTATTCGAATGACACATAATAGTGCT 57.113 30.769 20.87 0.00 43.23 4.40
2375 7348 8.765219 ACTTATTCGAATGACACATAATAGTGC 58.235 33.333 20.87 0.00 43.23 4.40
2400 7373 3.056749 ACATCGTCCCTGAAGTACTTCAC 60.057 47.826 30.07 20.30 43.90 3.18
2401 7374 3.162666 ACATCGTCCCTGAAGTACTTCA 58.837 45.455 31.11 31.11 46.27 3.02
2402 7375 3.870633 ACATCGTCCCTGAAGTACTTC 57.129 47.619 25.73 25.73 39.91 3.01
2403 7376 3.367087 CGAACATCGTCCCTGAAGTACTT 60.367 47.826 8.13 8.13 34.72 2.24
2404 7377 2.163815 CGAACATCGTCCCTGAAGTACT 59.836 50.000 0.00 0.00 34.72 2.73
2405 7378 2.527100 CGAACATCGTCCCTGAAGTAC 58.473 52.381 0.00 0.00 34.72 2.73
2407 7380 0.246635 CCGAACATCGTCCCTGAAGT 59.753 55.000 0.00 0.00 38.40 3.01
2408 7381 1.084370 GCCGAACATCGTCCCTGAAG 61.084 60.000 0.00 0.00 38.40 3.02
2409 7382 1.079405 GCCGAACATCGTCCCTGAA 60.079 57.895 0.00 0.00 38.40 3.02
2410 7383 1.982395 AGCCGAACATCGTCCCTGA 60.982 57.895 0.00 0.00 38.40 3.86
2411 7384 1.811266 CAGCCGAACATCGTCCCTG 60.811 63.158 0.00 0.00 38.40 4.45
2412 7385 2.579201 CAGCCGAACATCGTCCCT 59.421 61.111 0.00 0.00 38.40 4.20
2413 7386 2.511600 CCAGCCGAACATCGTCCC 60.512 66.667 0.00 0.00 38.40 4.46
2414 7387 1.810030 GTCCAGCCGAACATCGTCC 60.810 63.158 0.00 0.00 38.40 4.79
2415 7388 2.158959 CGTCCAGCCGAACATCGTC 61.159 63.158 0.00 0.00 38.40 4.20
2416 7389 2.126071 CGTCCAGCCGAACATCGT 60.126 61.111 0.00 0.00 38.40 3.73
2417 7390 2.158959 GTCGTCCAGCCGAACATCG 61.159 63.158 0.00 0.00 38.80 3.84
2418 7391 1.080093 TGTCGTCCAGCCGAACATC 60.080 57.895 0.00 0.00 38.80 3.06
2419 7392 1.374252 GTGTCGTCCAGCCGAACAT 60.374 57.895 0.00 0.00 38.80 2.71
2420 7393 2.028484 GTGTCGTCCAGCCGAACA 59.972 61.111 0.00 0.00 38.80 3.18
2421 7394 1.733399 GAGTGTCGTCCAGCCGAAC 60.733 63.158 0.00 0.00 38.80 3.95
2422 7395 2.197605 TGAGTGTCGTCCAGCCGAA 61.198 57.895 0.00 0.00 38.80 4.30
2423 7396 2.596338 TGAGTGTCGTCCAGCCGA 60.596 61.111 0.00 0.00 33.79 5.54
2424 7397 2.430921 GTGAGTGTCGTCCAGCCG 60.431 66.667 0.00 0.00 0.00 5.52
2425 7398 2.048127 GGTGAGTGTCGTCCAGCC 60.048 66.667 0.00 0.00 0.00 4.85
2426 7399 1.373497 CAGGTGAGTGTCGTCCAGC 60.373 63.158 0.00 0.00 0.00 4.85
2427 7400 0.039074 GTCAGGTGAGTGTCGTCCAG 60.039 60.000 0.00 0.00 0.00 3.86
2428 7401 1.792118 CGTCAGGTGAGTGTCGTCCA 61.792 60.000 0.00 0.00 0.00 4.02
2429 7402 1.081376 CGTCAGGTGAGTGTCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
2430 7403 1.081376 CCGTCAGGTGAGTGTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
2431 7404 3.039988 CCGTCAGGTGAGTGTCGT 58.960 61.111 0.00 0.00 0.00 4.34
2432 7405 2.430921 GCCGTCAGGTGAGTGTCG 60.431 66.667 0.00 0.00 40.50 4.35
2433 7406 3.052081 AGCCGTCAGGTGAGTGTC 58.948 61.111 0.00 0.00 40.50 3.67
2439 7412 0.798776 GTTTGATCAGCCGTCAGGTG 59.201 55.000 0.00 0.00 45.72 4.00
2440 7413 0.321653 GGTTTGATCAGCCGTCAGGT 60.322 55.000 0.00 0.00 40.50 4.00
2441 7414 1.361668 CGGTTTGATCAGCCGTCAGG 61.362 60.000 24.06 4.87 40.53 3.86
2442 7415 2.081526 CGGTTTGATCAGCCGTCAG 58.918 57.895 24.06 5.16 40.53 3.51
2443 7416 4.277239 CGGTTTGATCAGCCGTCA 57.723 55.556 24.06 0.00 40.53 4.35
2447 7420 1.668419 AGCATACGGTTTGATCAGCC 58.332 50.000 2.63 7.99 0.00 4.85
2448 7421 3.861569 GTAGCATACGGTTTGATCAGC 57.138 47.619 2.63 0.00 0.00 4.26
2460 7433 3.114065 GCAAGTCTACACCGTAGCATAC 58.886 50.000 0.00 0.00 38.50 2.39
2461 7434 2.100252 GGCAAGTCTACACCGTAGCATA 59.900 50.000 0.00 0.00 0.00 3.14
2462 7435 1.134788 GGCAAGTCTACACCGTAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
2463 7436 0.245539 GGCAAGTCTACACCGTAGCA 59.754 55.000 0.00 0.00 0.00 3.49
2464 7437 0.459759 GGGCAAGTCTACACCGTAGC 60.460 60.000 0.00 0.00 0.00 3.58
2465 7438 0.892755 TGGGCAAGTCTACACCGTAG 59.107 55.000 0.00 0.00 0.00 3.51
2466 7439 0.604578 GTGGGCAAGTCTACACCGTA 59.395 55.000 0.00 0.00 0.00 4.02
2467 7440 1.370064 GTGGGCAAGTCTACACCGT 59.630 57.895 0.00 0.00 0.00 4.83
2468 7441 1.736645 CGTGGGCAAGTCTACACCG 60.737 63.158 0.00 0.00 0.00 4.94
2469 7442 1.375523 CCGTGGGCAAGTCTACACC 60.376 63.158 0.00 0.00 0.00 4.16
2470 7443 0.249398 ATCCGTGGGCAAGTCTACAC 59.751 55.000 0.00 0.00 0.00 2.90
2471 7444 0.981183 AATCCGTGGGCAAGTCTACA 59.019 50.000 0.00 0.00 0.00 2.74
2472 7445 1.338769 ACAATCCGTGGGCAAGTCTAC 60.339 52.381 0.00 0.00 0.00 2.59
2473 7446 0.981183 ACAATCCGTGGGCAAGTCTA 59.019 50.000 0.00 0.00 0.00 2.59
2474 7447 0.110486 AACAATCCGTGGGCAAGTCT 59.890 50.000 0.00 0.00 0.00 3.24
2475 7448 1.737793 CTAACAATCCGTGGGCAAGTC 59.262 52.381 0.00 0.00 0.00 3.01
2476 7449 1.349688 TCTAACAATCCGTGGGCAAGT 59.650 47.619 0.00 0.00 0.00 3.16
2477 7450 2.107950 TCTAACAATCCGTGGGCAAG 57.892 50.000 0.00 0.00 0.00 4.01
2478 7451 2.799126 ATCTAACAATCCGTGGGCAA 57.201 45.000 0.00 0.00 0.00 4.52
2479 7452 4.562757 GCTATATCTAACAATCCGTGGGCA 60.563 45.833 0.00 0.00 0.00 5.36
2480 7453 3.933332 GCTATATCTAACAATCCGTGGGC 59.067 47.826 0.00 0.00 0.00 5.36
2481 7454 4.174009 CGCTATATCTAACAATCCGTGGG 58.826 47.826 0.00 0.00 0.00 4.61
2482 7455 4.621460 CACGCTATATCTAACAATCCGTGG 59.379 45.833 0.00 0.00 39.61 4.94
2483 7456 5.220381 ACACGCTATATCTAACAATCCGTG 58.780 41.667 7.65 7.65 46.07 4.94
2484 7457 5.449107 ACACGCTATATCTAACAATCCGT 57.551 39.130 0.00 0.00 0.00 4.69
2485 7458 4.553815 CGACACGCTATATCTAACAATCCG 59.446 45.833 0.00 0.00 0.00 4.18
2486 7459 5.458891 ACGACACGCTATATCTAACAATCC 58.541 41.667 0.00 0.00 0.00 3.01
2487 7460 5.568296 GGACGACACGCTATATCTAACAATC 59.432 44.000 0.00 0.00 0.00 2.67
2488 7461 5.458891 GGACGACACGCTATATCTAACAAT 58.541 41.667 0.00 0.00 0.00 2.71
2489 7462 4.553351 CGGACGACACGCTATATCTAACAA 60.553 45.833 0.00 0.00 0.00 2.83
2490 7463 3.059393 CGGACGACACGCTATATCTAACA 60.059 47.826 0.00 0.00 0.00 2.41
2491 7464 3.477122 CGGACGACACGCTATATCTAAC 58.523 50.000 0.00 0.00 0.00 2.34
2492 7465 2.481568 CCGGACGACACGCTATATCTAA 59.518 50.000 0.00 0.00 0.00 2.10
2493 7466 2.071540 CCGGACGACACGCTATATCTA 58.928 52.381 0.00 0.00 0.00 1.98
2494 7467 0.873054 CCGGACGACACGCTATATCT 59.127 55.000 0.00 0.00 0.00 1.98
2495 7468 0.870393 TCCGGACGACACGCTATATC 59.130 55.000 0.00 0.00 0.00 1.63
2496 7469 1.002033 GTTCCGGACGACACGCTATAT 60.002 52.381 1.83 0.00 0.00 0.86
2497 7470 0.378257 GTTCCGGACGACACGCTATA 59.622 55.000 1.83 0.00 0.00 1.31
2498 7471 1.138247 GTTCCGGACGACACGCTAT 59.862 57.895 1.83 0.00 0.00 2.97
2499 7472 1.968017 AGTTCCGGACGACACGCTA 60.968 57.895 1.83 0.00 0.00 4.26
2500 7473 3.292936 AGTTCCGGACGACACGCT 61.293 61.111 1.83 0.00 0.00 5.07
2501 7474 3.103911 CAGTTCCGGACGACACGC 61.104 66.667 1.83 0.00 0.00 5.34
2502 7475 1.728426 GACAGTTCCGGACGACACG 60.728 63.158 1.83 0.00 0.00 4.49
2503 7476 1.728426 CGACAGTTCCGGACGACAC 60.728 63.158 1.83 0.00 0.00 3.67
2504 7477 2.121564 GACGACAGTTCCGGACGACA 62.122 60.000 17.20 0.00 0.00 4.35
2505 7478 1.441682 GACGACAGTTCCGGACGAC 60.442 63.158 17.20 8.27 0.00 4.34
2506 7479 2.620112 GGACGACAGTTCCGGACGA 61.620 63.158 17.20 0.00 0.00 4.20
2507 7480 2.126580 GGACGACAGTTCCGGACG 60.127 66.667 1.83 6.78 0.00 4.79
2508 7481 0.458025 GATGGACGACAGTTCCGGAC 60.458 60.000 1.83 0.00 0.00 4.79
2509 7482 0.611062 AGATGGACGACAGTTCCGGA 60.611 55.000 0.00 0.00 0.00 5.14
2510 7483 1.065701 CTAGATGGACGACAGTTCCGG 59.934 57.143 0.00 0.00 0.00 5.14
2511 7484 1.534175 GCTAGATGGACGACAGTTCCG 60.534 57.143 0.00 0.00 0.00 4.30
2512 7485 1.476891 TGCTAGATGGACGACAGTTCC 59.523 52.381 0.00 0.00 0.00 3.62
2513 7486 2.941453 TGCTAGATGGACGACAGTTC 57.059 50.000 0.00 0.00 0.00 3.01
2514 7487 3.055819 ACATTGCTAGATGGACGACAGTT 60.056 43.478 0.00 0.00 0.00 3.16
2515 7488 2.497675 ACATTGCTAGATGGACGACAGT 59.502 45.455 0.00 0.00 0.00 3.55
2516 7489 3.170791 ACATTGCTAGATGGACGACAG 57.829 47.619 0.00 0.00 0.00 3.51
2517 7490 3.195610 AGAACATTGCTAGATGGACGACA 59.804 43.478 0.00 0.00 0.00 4.35
2518 7491 3.786635 AGAACATTGCTAGATGGACGAC 58.213 45.455 0.00 0.00 0.00 4.34
2519 7492 4.433615 GAAGAACATTGCTAGATGGACGA 58.566 43.478 0.00 0.00 0.00 4.20
2520 7493 3.243877 CGAAGAACATTGCTAGATGGACG 59.756 47.826 0.00 0.00 0.00 4.79
2521 7494 4.433615 TCGAAGAACATTGCTAGATGGAC 58.566 43.478 0.00 0.00 0.00 4.02
2522 7495 4.736126 TCGAAGAACATTGCTAGATGGA 57.264 40.909 0.00 0.00 0.00 3.41
2523 7496 5.998454 ATTCGAAGAACATTGCTAGATGG 57.002 39.130 3.35 0.00 45.90 3.51
2524 7497 8.554528 ACATTATTCGAAGAACATTGCTAGATG 58.445 33.333 7.48 0.95 45.90 2.90
2525 7498 8.554528 CACATTATTCGAAGAACATTGCTAGAT 58.445 33.333 7.48 0.00 45.90 1.98
2526 7499 7.549134 ACACATTATTCGAAGAACATTGCTAGA 59.451 33.333 7.48 0.00 45.90 2.43
2527 7500 7.688372 ACACATTATTCGAAGAACATTGCTAG 58.312 34.615 7.48 0.19 45.90 3.42
2528 7501 7.609760 ACACATTATTCGAAGAACATTGCTA 57.390 32.000 7.48 0.00 45.90 3.49
2529 7502 6.500684 ACACATTATTCGAAGAACATTGCT 57.499 33.333 7.48 0.00 45.90 3.91
2530 7503 7.566858 AAACACATTATTCGAAGAACATTGC 57.433 32.000 7.48 0.00 45.90 3.56
2531 7504 9.179552 TGAAAACACATTATTCGAAGAACATTG 57.820 29.630 7.48 5.27 45.90 2.82
2532 7505 9.743057 TTGAAAACACATTATTCGAAGAACATT 57.257 25.926 7.48 0.00 45.90 2.71
2533 7506 9.743057 TTTGAAAACACATTATTCGAAGAACAT 57.257 25.926 7.48 0.00 45.90 2.71
2534 7507 9.232082 CTTTGAAAACACATTATTCGAAGAACA 57.768 29.630 7.48 0.00 45.90 3.18
2535 7508 9.445786 TCTTTGAAAACACATTATTCGAAGAAC 57.554 29.630 7.48 0.00 44.58 3.01
2540 7513 9.190858 CCAAATCTTTGAAAACACATTATTCGA 57.809 29.630 4.25 0.00 40.55 3.71
2541 7514 8.434661 CCCAAATCTTTGAAAACACATTATTCG 58.565 33.333 4.25 0.00 40.55 3.34
2542 7515 9.487790 TCCCAAATCTTTGAAAACACATTATTC 57.512 29.630 4.25 0.00 40.55 1.75
2543 7516 9.844257 TTCCCAAATCTTTGAAAACACATTATT 57.156 25.926 4.25 0.00 40.55 1.40
2545 7518 9.844257 AATTCCCAAATCTTTGAAAACACATTA 57.156 25.926 4.25 0.00 40.55 1.90
2546 7519 8.750515 AATTCCCAAATCTTTGAAAACACATT 57.249 26.923 4.25 0.00 40.55 2.71
2547 7520 8.623030 CAAATTCCCAAATCTTTGAAAACACAT 58.377 29.630 4.25 0.00 40.55 3.21
2548 7521 7.609532 ACAAATTCCCAAATCTTTGAAAACACA 59.390 29.630 4.25 0.00 40.55 3.72
2549 7522 7.984391 ACAAATTCCCAAATCTTTGAAAACAC 58.016 30.769 4.25 0.00 40.55 3.32
2550 7523 9.323985 CTACAAATTCCCAAATCTTTGAAAACA 57.676 29.630 4.25 0.00 40.55 2.83
2551 7524 9.325198 ACTACAAATTCCCAAATCTTTGAAAAC 57.675 29.630 4.25 0.00 40.55 2.43
2554 7527 9.362151 ACTACTACAAATTCCCAAATCTTTGAA 57.638 29.630 4.25 0.00 40.55 2.69
2555 7528 8.934023 ACTACTACAAATTCCCAAATCTTTGA 57.066 30.769 4.25 0.00 40.55 2.69
2619 7592 3.173953 TCATCCCTGCTGAATGGTTTT 57.826 42.857 0.00 0.00 0.00 2.43
2621 7594 2.905415 TTCATCCCTGCTGAATGGTT 57.095 45.000 0.00 0.00 0.00 3.67
2633 7606 7.984050 AGATGTATGATTCGTATGATTCATCCC 59.016 37.037 20.34 14.58 41.74 3.85
2634 7607 8.939201 AGATGTATGATTCGTATGATTCATCC 57.061 34.615 20.34 13.02 41.74 3.51
2690 7663 3.578716 AGTAGTGGGTGGATGGATTATCG 59.421 47.826 0.00 0.00 36.62 2.92
2702 7675 7.610305 ACTTTATCATTTGGTTAGTAGTGGGTG 59.390 37.037 0.00 0.00 0.00 4.61
2756 7729 6.929625 AGGACAATCGGATATCATTCTACAG 58.070 40.000 4.83 0.00 0.00 2.74
2757 7730 6.918067 AGGACAATCGGATATCATTCTACA 57.082 37.500 4.83 0.00 0.00 2.74
2758 7731 9.360093 CTTTAGGACAATCGGATATCATTCTAC 57.640 37.037 4.83 0.00 0.00 2.59
2759 7732 9.309224 TCTTTAGGACAATCGGATATCATTCTA 57.691 33.333 4.83 0.00 0.00 2.10
2784 7757 4.487019 GTCTGTTGTAGCTTGTACCTCTC 58.513 47.826 0.00 0.00 0.00 3.20
2794 7772 2.030185 CAGTACGTGGTCTGTTGTAGCT 60.030 50.000 0.00 0.00 0.00 3.32
2806 7784 4.041617 TGCAACAGCAGTACGTGG 57.958 55.556 0.00 0.00 33.59 4.94
2845 7823 7.525688 TCGTTTCTGTGACATCTATTTGATC 57.474 36.000 0.00 0.00 32.05 2.92
2852 7830 3.934457 TGCTCGTTTCTGTGACATCTA 57.066 42.857 0.00 0.00 0.00 1.98
2867 7846 1.203287 TCAAGAGACTGGACATGCTCG 59.797 52.381 0.00 0.00 32.80 5.03
2879 7858 4.339814 AGGGATGATCGTAACTCAAGAGAC 59.660 45.833 3.73 0.00 0.00 3.36
2901 7880 2.228059 GGACAGATGGGCATGATTGAG 58.772 52.381 0.00 0.00 0.00 3.02
2911 7894 0.914644 ACACCTCATGGACAGATGGG 59.085 55.000 0.00 0.00 37.04 4.00
2913 7896 2.235650 AGTGACACCTCATGGACAGATG 59.764 50.000 0.84 0.00 37.04 2.90
2914 7897 2.544721 AGTGACACCTCATGGACAGAT 58.455 47.619 0.84 0.00 37.04 2.90
2933 7927 9.270640 CTTCATTAACCTCTATCAGAATCCAAG 57.729 37.037 0.00 0.00 0.00 3.61
2940 7934 7.839705 AGTACCACTTCATTAACCTCTATCAGA 59.160 37.037 0.00 0.00 0.00 3.27
2942 7936 7.973048 AGTACCACTTCATTAACCTCTATCA 57.027 36.000 0.00 0.00 0.00 2.15
2956 7950 8.874816 CAAAGATTAGCTCTAAAGTACCACTTC 58.125 37.037 0.00 0.00 32.78 3.01
2968 7962 3.865745 GCAAGACGCAAAGATTAGCTCTA 59.134 43.478 0.00 0.00 41.79 2.43
2969 7963 2.675348 GCAAGACGCAAAGATTAGCTCT 59.325 45.455 0.00 0.00 41.79 4.09
3034 8028 3.703001 TGTTTGCCCTTTTGGTTTTGA 57.297 38.095 0.00 0.00 38.10 2.69
3058 8052 3.454719 TTGATGCCCCTGAAATCTGAA 57.545 42.857 0.00 0.00 0.00 3.02
3059 8053 3.454719 TTTGATGCCCCTGAAATCTGA 57.545 42.857 0.00 0.00 0.00 3.27
3060 8054 4.054780 CATTTGATGCCCCTGAAATCTG 57.945 45.455 0.00 0.00 0.00 2.90
3095 8090 2.494059 TGCCGAGAAAACTTCTTCCAG 58.506 47.619 0.00 0.00 40.87 3.86
3096 8091 2.631160 TGCCGAGAAAACTTCTTCCA 57.369 45.000 0.00 0.00 40.87 3.53
3112 8107 3.865164 GCTAGTGTTTTGCCAATTATGCC 59.135 43.478 0.00 0.00 0.00 4.40
3114 8109 8.755696 TTAAAGCTAGTGTTTTGCCAATTATG 57.244 30.769 0.00 0.00 0.00 1.90
3116 8111 9.418045 GAATTAAAGCTAGTGTTTTGCCAATTA 57.582 29.630 0.00 0.00 0.00 1.40
3131 8126 8.458573 TCCTTGTTTGAAGTGAATTAAAGCTA 57.541 30.769 0.00 0.00 0.00 3.32
3132 8127 7.346751 TCCTTGTTTGAAGTGAATTAAAGCT 57.653 32.000 0.00 0.00 0.00 3.74
3133 8128 7.061094 CGATCCTTGTTTGAAGTGAATTAAAGC 59.939 37.037 0.00 0.00 0.00 3.51
3136 8131 7.504924 ACGATCCTTGTTTGAAGTGAATTAA 57.495 32.000 0.00 0.00 0.00 1.40
3138 8133 6.149474 CCTACGATCCTTGTTTGAAGTGAATT 59.851 38.462 0.00 0.00 0.00 2.17
3139 8134 5.643777 CCTACGATCCTTGTTTGAAGTGAAT 59.356 40.000 0.00 0.00 0.00 2.57
3147 8142 1.659098 GCGACCTACGATCCTTGTTTG 59.341 52.381 0.00 0.00 45.77 2.93
3193 8192 1.073284 GCTTAGTGGAAGGTTGGTCCA 59.927 52.381 0.00 0.00 43.03 4.02
3198 8197 0.798776 CGCAGCTTAGTGGAAGGTTG 59.201 55.000 0.00 0.00 43.47 3.77
3216 8215 1.752501 CGAGCACATTAGTTCCGCCG 61.753 60.000 0.00 0.00 0.00 6.46
3219 8218 0.647410 CTGCGAGCACATTAGTTCCG 59.353 55.000 0.00 0.00 0.00 4.30
3282 8281 7.117956 GCTATTCAAGATCCCCGTAGTAAATTC 59.882 40.741 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.