Multiple sequence alignment - TraesCS3B01G519900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G519900 chr3B 100.000 3338 0 0 581 3918 763232806 763236143 0.000000e+00 6165
1 TraesCS3B01G519900 chr3B 87.683 341 32 5 3492 3830 766587291 766587623 4.750000e-104 388
2 TraesCS3B01G519900 chr3B 88.110 328 28 6 3504 3830 766193015 766192698 2.860000e-101 379
3 TraesCS3B01G519900 chr3B 100.000 199 0 0 1 199 763232226 763232424 6.180000e-98 368
4 TraesCS3B01G519900 chr3B 80.808 198 28 8 3587 3782 542133726 542133915 3.150000e-31 147
5 TraesCS3B01G519900 chr3D 86.281 1538 133 32 1854 3357 573909820 573908327 0.000000e+00 1600
6 TraesCS3B01G519900 chr3D 90.109 1011 58 24 845 1832 573911015 573910024 0.000000e+00 1275
7 TraesCS3B01G519900 chr3D 87.179 429 38 8 3492 3918 573908342 573907929 4.580000e-129 472
8 TraesCS3B01G519900 chr3D 88.270 341 30 7 3492 3830 575627104 575627436 2.190000e-107 399
9 TraesCS3B01G519900 chr3D 92.273 220 16 1 599 817 573911747 573911528 1.060000e-80 311
10 TraesCS3B01G519900 chr3D 79.009 343 46 17 3583 3918 573845971 573845648 1.100000e-50 211
11 TraesCS3B01G519900 chr3D 92.857 112 8 0 3378 3489 450238539 450238428 3.130000e-36 163
12 TraesCS3B01G519900 chr3A 84.593 1707 117 66 845 2466 709065184 709063539 0.000000e+00 1561
13 TraesCS3B01G519900 chr3A 91.553 367 26 3 2404 2765 709063539 709063173 5.840000e-138 501
14 TraesCS3B01G519900 chr3A 81.434 544 53 25 2829 3358 709063149 709062640 6.100000e-108 401
15 TraesCS3B01G519900 chr3A 94.706 170 7 1 3751 3918 709062440 709062271 3.000000e-66 263
16 TraesCS3B01G519900 chr3A 86.636 217 23 4 3492 3707 709062656 709062445 6.540000e-58 235
17 TraesCS3B01G519900 chr3A 78.841 345 43 18 3583 3918 708906720 708906397 5.130000e-49 206
18 TraesCS3B01G519900 chr3A 77.843 343 49 18 3583 3918 708920958 708920636 1.860000e-43 187
19 TraesCS3B01G519900 chr7B 88.437 467 29 8 1348 1792 630363889 630364352 1.240000e-149 540
20 TraesCS3B01G519900 chr7B 79.847 392 41 21 2297 2656 79938596 79938211 6.500000e-63 252
21 TraesCS3B01G519900 chr1B 87.179 468 34 8 1348 1792 78446811 78446347 3.490000e-140 508
22 TraesCS3B01G519900 chr1B 87.207 469 32 11 1348 1792 127644683 127645147 3.490000e-140 508
23 TraesCS3B01G519900 chr1B 85.684 468 41 9 1348 1792 78426730 78426266 1.650000e-128 470
24 TraesCS3B01G519900 chr6B 85.867 467 41 7 1348 1792 371123251 371123714 1.270000e-129 473
25 TraesCS3B01G519900 chr7A 77.524 525 75 21 2162 2656 123144115 123143604 3.860000e-70 276
26 TraesCS3B01G519900 chr7A 93.750 112 7 0 3378 3489 660485405 660485294 6.730000e-38 169
27 TraesCS3B01G519900 chr4B 83.740 246 19 4 1348 1572 267075240 267075485 3.070000e-51 213
28 TraesCS3B01G519900 chr7D 75.670 522 71 24 2162 2656 119002772 119002280 3.970000e-50 209
29 TraesCS3B01G519900 chr5D 93.750 112 7 0 3378 3489 8060947 8060836 6.730000e-38 169
30 TraesCS3B01G519900 chr4A 93.750 112 7 0 3378 3489 533443623 533443734 6.730000e-38 169
31 TraesCS3B01G519900 chr2A 93.750 112 7 0 3378 3489 13918146 13918035 6.730000e-38 169
32 TraesCS3B01G519900 chr2A 93.750 112 7 0 3378 3489 734392934 734392823 6.730000e-38 169
33 TraesCS3B01G519900 chr6A 92.857 112 8 0 3378 3489 586995394 586995505 3.130000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G519900 chr3B 763232226 763236143 3917 False 3266.5 6165 100.0000 1 3918 2 chr3B.!!$F3 3917
1 TraesCS3B01G519900 chr3D 573907929 573911747 3818 True 914.5 1600 88.9605 599 3918 4 chr3D.!!$R3 3319
2 TraesCS3B01G519900 chr3A 709062271 709065184 2913 True 592.2 1561 87.7844 845 3918 5 chr3A.!!$R3 3073
3 TraesCS3B01G519900 chr7A 123143604 123144115 511 True 276.0 276 77.5240 2162 2656 1 chr7A.!!$R1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 819 1.074405 AGGAAGGAAGCATCAGCAACA 59.926 47.619 0.0 0.0 45.49 3.33 F
1544 2075 0.604780 ATGCTGCGTTCAGTTGCTCT 60.605 50.000 0.0 0.0 42.29 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 2588 0.454600 CAAATTCATCTGCGGCTGCT 59.545 50.0 20.27 0.0 43.34 4.24 R
3444 4303 0.039074 CTGGACGACACTCACCTGAC 60.039 60.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.767250 TGGTGTCATTAATATCAAACAACCA 57.233 32.000 0.00 0.00 0.00 3.67
33 34 8.359875 TGGTGTCATTAATATCAAACAACCAT 57.640 30.769 0.00 0.00 0.00 3.55
34 35 8.249638 TGGTGTCATTAATATCAAACAACCATG 58.750 33.333 0.00 0.00 0.00 3.66
35 36 7.222611 GGTGTCATTAATATCAAACAACCATGC 59.777 37.037 0.00 0.00 0.00 4.06
36 37 7.758980 GTGTCATTAATATCAAACAACCATGCA 59.241 33.333 0.00 0.00 0.00 3.96
37 38 8.476447 TGTCATTAATATCAAACAACCATGCAT 58.524 29.630 0.00 0.00 0.00 3.96
38 39 9.964303 GTCATTAATATCAAACAACCATGCATA 57.036 29.630 0.00 0.00 0.00 3.14
39 40 9.964303 TCATTAATATCAAACAACCATGCATAC 57.036 29.630 0.00 0.00 0.00 2.39
40 41 9.195411 CATTAATATCAAACAACCATGCATACC 57.805 33.333 0.00 0.00 0.00 2.73
41 42 8.532186 TTAATATCAAACAACCATGCATACCT 57.468 30.769 0.00 0.00 0.00 3.08
42 43 9.634021 TTAATATCAAACAACCATGCATACCTA 57.366 29.630 0.00 0.00 0.00 3.08
43 44 8.710749 AATATCAAACAACCATGCATACCTAT 57.289 30.769 0.00 0.00 0.00 2.57
44 45 6.639632 ATCAAACAACCATGCATACCTATC 57.360 37.500 0.00 0.00 0.00 2.08
45 46 4.887071 TCAAACAACCATGCATACCTATCC 59.113 41.667 0.00 0.00 0.00 2.59
46 47 4.518278 AACAACCATGCATACCTATCCA 57.482 40.909 0.00 0.00 0.00 3.41
47 48 4.729552 ACAACCATGCATACCTATCCAT 57.270 40.909 0.00 0.00 0.00 3.41
48 49 5.841267 ACAACCATGCATACCTATCCATA 57.159 39.130 0.00 0.00 0.00 2.74
49 50 6.392911 ACAACCATGCATACCTATCCATAT 57.607 37.500 0.00 0.00 0.00 1.78
50 51 6.418101 ACAACCATGCATACCTATCCATATC 58.582 40.000 0.00 0.00 0.00 1.63
51 52 5.636903 ACCATGCATACCTATCCATATCC 57.363 43.478 0.00 0.00 0.00 2.59
52 53 4.413520 ACCATGCATACCTATCCATATCCC 59.586 45.833 0.00 0.00 0.00 3.85
53 54 4.202503 CCATGCATACCTATCCATATCCCC 60.203 50.000 0.00 0.00 0.00 4.81
54 55 4.368240 TGCATACCTATCCATATCCCCT 57.632 45.455 0.00 0.00 0.00 4.79
55 56 4.709944 TGCATACCTATCCATATCCCCTT 58.290 43.478 0.00 0.00 0.00 3.95
56 57 4.474651 TGCATACCTATCCATATCCCCTTG 59.525 45.833 0.00 0.00 0.00 3.61
57 58 4.721776 GCATACCTATCCATATCCCCTTGA 59.278 45.833 0.00 0.00 0.00 3.02
58 59 5.191722 GCATACCTATCCATATCCCCTTGAA 59.808 44.000 0.00 0.00 0.00 2.69
59 60 6.126361 GCATACCTATCCATATCCCCTTGAAT 60.126 42.308 0.00 0.00 0.00 2.57
60 61 7.072454 GCATACCTATCCATATCCCCTTGAATA 59.928 40.741 0.00 0.00 0.00 1.75
61 62 8.654997 CATACCTATCCATATCCCCTTGAATAG 58.345 40.741 0.00 0.00 0.00 1.73
62 63 6.584950 ACCTATCCATATCCCCTTGAATAGT 58.415 40.000 0.00 0.00 0.00 2.12
63 64 6.674419 ACCTATCCATATCCCCTTGAATAGTC 59.326 42.308 0.00 0.00 0.00 2.59
64 65 6.673978 CCTATCCATATCCCCTTGAATAGTCA 59.326 42.308 0.00 0.00 0.00 3.41
65 66 7.182749 CCTATCCATATCCCCTTGAATAGTCAA 59.817 40.741 5.38 5.38 41.57 3.18
66 67 7.594849 ATCCATATCCCCTTGAATAGTCAAT 57.405 36.000 6.00 0.00 42.85 2.57
67 68 8.700145 ATCCATATCCCCTTGAATAGTCAATA 57.300 34.615 6.00 0.00 42.85 1.90
68 69 7.918076 TCCATATCCCCTTGAATAGTCAATAC 58.082 38.462 6.00 0.00 42.85 1.89
69 70 7.515861 TCCATATCCCCTTGAATAGTCAATACA 59.484 37.037 6.00 0.00 42.85 2.29
70 71 7.607991 CCATATCCCCTTGAATAGTCAATACAC 59.392 40.741 6.00 0.00 42.85 2.90
71 72 5.367945 TCCCCTTGAATAGTCAATACACC 57.632 43.478 6.00 0.00 42.85 4.16
72 73 5.036916 TCCCCTTGAATAGTCAATACACCT 58.963 41.667 6.00 0.00 42.85 4.00
73 74 6.206787 TCCCCTTGAATAGTCAATACACCTA 58.793 40.000 6.00 0.00 42.85 3.08
74 75 6.099269 TCCCCTTGAATAGTCAATACACCTAC 59.901 42.308 6.00 0.00 42.85 3.18
75 76 6.126883 CCCCTTGAATAGTCAATACACCTACA 60.127 42.308 6.00 0.00 42.85 2.74
76 77 7.335627 CCCTTGAATAGTCAATACACCTACAA 58.664 38.462 6.00 0.00 42.85 2.41
77 78 7.280205 CCCTTGAATAGTCAATACACCTACAAC 59.720 40.741 6.00 0.00 42.85 3.32
78 79 8.041323 CCTTGAATAGTCAATACACCTACAACT 58.959 37.037 6.00 0.00 42.85 3.16
79 80 8.997621 TTGAATAGTCAATACACCTACAACTC 57.002 34.615 0.56 0.00 38.88 3.01
80 81 8.129496 TGAATAGTCAATACACCTACAACTCA 57.871 34.615 0.00 0.00 0.00 3.41
81 82 8.251026 TGAATAGTCAATACACCTACAACTCAG 58.749 37.037 0.00 0.00 0.00 3.35
82 83 7.719871 ATAGTCAATACACCTACAACTCAGT 57.280 36.000 0.00 0.00 0.00 3.41
83 84 6.026947 AGTCAATACACCTACAACTCAGTC 57.973 41.667 0.00 0.00 0.00 3.51
84 85 5.538813 AGTCAATACACCTACAACTCAGTCA 59.461 40.000 0.00 0.00 0.00 3.41
85 86 6.211584 AGTCAATACACCTACAACTCAGTCAT 59.788 38.462 0.00 0.00 0.00 3.06
86 87 6.874134 GTCAATACACCTACAACTCAGTCATT 59.126 38.462 0.00 0.00 0.00 2.57
87 88 7.387948 GTCAATACACCTACAACTCAGTCATTT 59.612 37.037 0.00 0.00 0.00 2.32
88 89 8.590204 TCAATACACCTACAACTCAGTCATTTA 58.410 33.333 0.00 0.00 0.00 1.40
89 90 9.214957 CAATACACCTACAACTCAGTCATTTAA 57.785 33.333 0.00 0.00 0.00 1.52
90 91 8.773404 ATACACCTACAACTCAGTCATTTAAC 57.227 34.615 0.00 0.00 0.00 2.01
91 92 6.827727 ACACCTACAACTCAGTCATTTAACT 58.172 36.000 0.00 0.00 0.00 2.24
92 93 7.959175 ACACCTACAACTCAGTCATTTAACTA 58.041 34.615 0.00 0.00 0.00 2.24
93 94 8.088981 ACACCTACAACTCAGTCATTTAACTAG 58.911 37.037 0.00 0.00 0.00 2.57
94 95 8.304596 CACCTACAACTCAGTCATTTAACTAGA 58.695 37.037 0.00 0.00 0.00 2.43
95 96 9.036980 ACCTACAACTCAGTCATTTAACTAGAT 57.963 33.333 0.00 0.00 0.00 1.98
121 122 8.929260 ATCTGACATTTATGATCATTTAGCCA 57.071 30.769 14.65 5.08 0.00 4.75
122 123 8.387190 TCTGACATTTATGATCATTTAGCCAG 57.613 34.615 14.65 13.63 0.00 4.85
123 124 6.973843 TGACATTTATGATCATTTAGCCAGC 58.026 36.000 14.65 0.00 0.00 4.85
124 125 6.774170 TGACATTTATGATCATTTAGCCAGCT 59.226 34.615 14.65 0.00 0.00 4.24
125 126 7.040892 TGACATTTATGATCATTTAGCCAGCTC 60.041 37.037 14.65 0.00 0.00 4.09
126 127 6.774170 ACATTTATGATCATTTAGCCAGCTCA 59.226 34.615 14.65 0.00 0.00 4.26
127 128 7.286087 ACATTTATGATCATTTAGCCAGCTCAA 59.714 33.333 14.65 0.00 0.00 3.02
128 129 7.643569 TTTATGATCATTTAGCCAGCTCAAA 57.356 32.000 14.65 0.74 0.00 2.69
129 130 7.643569 TTATGATCATTTAGCCAGCTCAAAA 57.356 32.000 14.65 0.00 0.00 2.44
130 131 5.981088 TGATCATTTAGCCAGCTCAAAAA 57.019 34.783 0.00 0.00 0.00 1.94
131 132 5.957798 TGATCATTTAGCCAGCTCAAAAAG 58.042 37.500 0.00 0.00 0.00 2.27
132 133 5.477984 TGATCATTTAGCCAGCTCAAAAAGT 59.522 36.000 0.00 0.00 0.00 2.66
133 134 6.658816 TGATCATTTAGCCAGCTCAAAAAGTA 59.341 34.615 0.00 0.00 0.00 2.24
134 135 6.500684 TCATTTAGCCAGCTCAAAAAGTAG 57.499 37.500 0.00 0.00 0.00 2.57
135 136 6.237901 TCATTTAGCCAGCTCAAAAAGTAGA 58.762 36.000 0.00 0.00 0.00 2.59
136 137 6.714810 TCATTTAGCCAGCTCAAAAAGTAGAA 59.285 34.615 0.00 0.00 0.00 2.10
137 138 7.394359 TCATTTAGCCAGCTCAAAAAGTAGAAT 59.606 33.333 0.00 0.00 0.00 2.40
138 139 6.743575 TTAGCCAGCTCAAAAAGTAGAATC 57.256 37.500 0.00 0.00 0.00 2.52
139 140 4.916183 AGCCAGCTCAAAAAGTAGAATCT 58.084 39.130 0.00 0.00 0.00 2.40
140 141 5.320277 AGCCAGCTCAAAAAGTAGAATCTT 58.680 37.500 0.00 0.00 0.00 2.40
141 142 5.772169 AGCCAGCTCAAAAAGTAGAATCTTT 59.228 36.000 0.00 0.00 39.00 2.52
142 143 6.266330 AGCCAGCTCAAAAAGTAGAATCTTTT 59.734 34.615 0.00 0.00 45.66 2.27
151 152 6.959639 AAAGTAGAATCTTTTTGACCTGCA 57.040 33.333 0.00 0.00 34.50 4.41
152 153 7.530426 AAAGTAGAATCTTTTTGACCTGCAT 57.470 32.000 0.00 0.00 34.50 3.96
153 154 7.530426 AAGTAGAATCTTTTTGACCTGCATT 57.470 32.000 0.00 0.00 0.00 3.56
154 155 8.635765 AAGTAGAATCTTTTTGACCTGCATTA 57.364 30.769 0.00 0.00 0.00 1.90
155 156 8.814038 AGTAGAATCTTTTTGACCTGCATTAT 57.186 30.769 0.00 0.00 0.00 1.28
156 157 9.247861 AGTAGAATCTTTTTGACCTGCATTATT 57.752 29.630 0.00 0.00 0.00 1.40
157 158 9.294030 GTAGAATCTTTTTGACCTGCATTATTG 57.706 33.333 0.00 0.00 0.00 1.90
178 179 9.674068 TTATTGCAGTTGTATTGGATACTTACA 57.326 29.630 0.00 0.00 36.70 2.41
179 180 7.987750 TTGCAGTTGTATTGGATACTTACAA 57.012 32.000 1.29 1.29 40.85 2.41
180 181 7.609760 TGCAGTTGTATTGGATACTTACAAG 57.390 36.000 4.78 0.00 42.45 3.16
181 182 6.093495 TGCAGTTGTATTGGATACTTACAAGC 59.907 38.462 4.78 6.51 42.45 4.01
182 183 6.093495 GCAGTTGTATTGGATACTTACAAGCA 59.907 38.462 4.78 0.00 42.45 3.91
183 184 7.361713 GCAGTTGTATTGGATACTTACAAGCAA 60.362 37.037 4.78 0.00 42.45 3.91
184 185 8.177663 CAGTTGTATTGGATACTTACAAGCAAG 58.822 37.037 4.78 0.00 42.45 4.01
185 186 8.100791 AGTTGTATTGGATACTTACAAGCAAGA 58.899 33.333 4.78 0.00 42.45 3.02
186 187 8.893727 GTTGTATTGGATACTTACAAGCAAGAT 58.106 33.333 4.78 0.00 42.45 2.40
187 188 8.437360 TGTATTGGATACTTACAAGCAAGATG 57.563 34.615 0.00 0.00 36.70 2.90
188 189 6.949352 ATTGGATACTTACAAGCAAGATGG 57.051 37.500 0.00 0.00 37.61 3.51
189 190 4.199310 TGGATACTTACAAGCAAGATGGC 58.801 43.478 0.00 0.00 37.61 4.40
190 191 3.565902 GGATACTTACAAGCAAGATGGCC 59.434 47.826 0.00 0.00 0.00 5.36
191 192 2.584835 ACTTACAAGCAAGATGGCCA 57.415 45.000 8.56 8.56 0.00 5.36
192 193 3.091633 ACTTACAAGCAAGATGGCCAT 57.908 42.857 20.96 20.96 0.00 4.40
193 194 4.235079 ACTTACAAGCAAGATGGCCATA 57.765 40.909 20.84 0.00 0.00 2.74
194 195 4.796606 ACTTACAAGCAAGATGGCCATAT 58.203 39.130 20.84 14.09 0.00 1.78
195 196 5.203528 ACTTACAAGCAAGATGGCCATATT 58.796 37.500 20.84 20.34 0.00 1.28
196 197 5.300286 ACTTACAAGCAAGATGGCCATATTC 59.700 40.000 22.63 16.40 0.00 1.75
197 198 2.620115 ACAAGCAAGATGGCCATATTCG 59.380 45.455 22.63 17.76 0.00 3.34
198 199 1.242076 AGCAAGATGGCCATATTCGC 58.758 50.000 26.47 26.47 0.00 4.70
617 618 3.243410 CACACACACACAAATGCAACATC 59.757 43.478 0.00 0.00 0.00 3.06
697 698 3.971305 CACACCCCTATGTATCTAACCCA 59.029 47.826 0.00 0.00 0.00 4.51
709 710 8.924511 ATGTATCTAACCCAAAATATGTGAGG 57.075 34.615 0.00 0.00 0.00 3.86
710 711 8.096621 TGTATCTAACCCAAAATATGTGAGGA 57.903 34.615 0.00 0.00 0.00 3.71
712 713 9.403583 GTATCTAACCCAAAATATGTGAGGAAA 57.596 33.333 0.00 0.00 0.00 3.13
716 717 6.933514 ACCCAAAATATGTGAGGAAAACAT 57.066 33.333 0.00 0.00 41.14 2.71
742 743 4.686554 CCTAAAGAAACCAGAAGACTCACG 59.313 45.833 0.00 0.00 0.00 4.35
767 768 2.703409 CCTTGAGCACGCATACGC 59.297 61.111 0.00 0.00 45.53 4.42
797 799 3.196685 GCCAAAGAAGAGAGCCTAGAAGA 59.803 47.826 0.00 0.00 0.00 2.87
817 819 1.074405 AGGAAGGAAGCATCAGCAACA 59.926 47.619 0.00 0.00 45.49 3.33
823 871 1.547372 GAAGCATCAGCAACACCCAAT 59.453 47.619 0.00 0.00 45.49 3.16
830 878 3.966979 TCAGCAACACCCAATCACATAT 58.033 40.909 0.00 0.00 0.00 1.78
832 880 4.158209 TCAGCAACACCCAATCACATATTG 59.842 41.667 0.00 0.00 0.00 1.90
878 1365 2.060980 GGATCCCACGAGCTCACCT 61.061 63.158 15.40 0.00 0.00 4.00
879 1366 1.617947 GGATCCCACGAGCTCACCTT 61.618 60.000 15.40 0.00 0.00 3.50
958 1445 3.047877 CACCAACCCGACCGAAGC 61.048 66.667 0.00 0.00 0.00 3.86
964 1452 4.308458 CCCGACCGAAGCACACCA 62.308 66.667 0.00 0.00 0.00 4.17
967 1455 2.594962 CGACCGAAGCACACCACAC 61.595 63.158 0.00 0.00 0.00 3.82
1236 1767 1.205417 GGTTTCGATTGTAGGGACGGA 59.795 52.381 0.00 0.00 0.00 4.69
1363 1894 4.379499 GCCACCAAGTAGAAATAACTGTGC 60.379 45.833 0.00 0.00 0.00 4.57
1436 1967 1.741706 CAACCATCTAGCAGCACAAGG 59.258 52.381 0.00 0.00 0.00 3.61
1451 1982 0.839946 CAAGGCAGGGCTGTACCTAT 59.160 55.000 0.00 0.00 39.34 2.57
1509 2040 1.227999 GCAGCACAGTAGCGAACCAA 61.228 55.000 0.00 0.00 40.15 3.67
1544 2075 0.604780 ATGCTGCGTTCAGTTGCTCT 60.605 50.000 0.00 0.00 42.29 4.09
1617 2149 6.842163 ACGTTATAGAAAATTGCAACTCCTG 58.158 36.000 0.00 0.00 0.00 3.86
1630 2162 3.503748 GCAACTCCTGTGCTGAATTACTT 59.496 43.478 0.00 0.00 0.00 2.24
1631 2163 4.614535 GCAACTCCTGTGCTGAATTACTTG 60.615 45.833 0.00 0.00 0.00 3.16
1632 2164 4.623932 ACTCCTGTGCTGAATTACTTGA 57.376 40.909 0.00 0.00 0.00 3.02
1633 2165 5.171339 ACTCCTGTGCTGAATTACTTGAT 57.829 39.130 0.00 0.00 0.00 2.57
1634 2166 6.299805 ACTCCTGTGCTGAATTACTTGATA 57.700 37.500 0.00 0.00 0.00 2.15
1635 2167 6.893583 ACTCCTGTGCTGAATTACTTGATAT 58.106 36.000 0.00 0.00 0.00 1.63
1636 2168 6.765036 ACTCCTGTGCTGAATTACTTGATATG 59.235 38.462 0.00 0.00 0.00 1.78
1683 2223 5.290493 AGTGTTGAGTTCCTGTTATGACA 57.710 39.130 0.00 0.00 0.00 3.58
1714 2254 3.308832 CCCTACCTGGTATGCAGGAAAAA 60.309 47.826 13.81 0.00 42.27 1.94
1730 2270 3.429410 GGAAAAACCTGCATATCCTGTGC 60.429 47.826 0.00 0.00 42.81 4.57
1745 2285 2.238521 CTGTGCTTGTTTGTATGGGGT 58.761 47.619 0.00 0.00 0.00 4.95
1762 2304 8.285891 TGTATGGGGTAAATTATTTCATGGAGT 58.714 33.333 0.00 0.00 0.00 3.85
1764 2306 6.498538 TGGGGTAAATTATTTCATGGAGTGT 58.501 36.000 0.00 0.00 0.00 3.55
1768 2310 7.973944 GGGTAAATTATTTCATGGAGTGTTCAC 59.026 37.037 0.00 0.00 0.00 3.18
1840 2404 8.902806 TGAATTGATCGTTTTATAGCCTTGAAT 58.097 29.630 0.00 0.00 0.00 2.57
1848 2412 9.781834 TCGTTTTATAGCCTTGAATTAAATGTG 57.218 29.630 0.00 0.00 0.00 3.21
1861 2588 9.688091 TTGAATTAAATGTGGTGCTAATAGGTA 57.312 29.630 0.00 0.00 0.00 3.08
1871 2598 2.071688 CTAATAGGTAGCAGCCGCAG 57.928 55.000 0.00 0.00 42.27 5.18
1875 2602 0.755327 TAGGTAGCAGCCGCAGATGA 60.755 55.000 0.00 0.00 42.27 2.92
1895 2623 0.251787 ATTTGGGTGTGCTTCCCTCC 60.252 55.000 11.43 0.00 44.84 4.30
1901 2629 0.890683 GTGTGCTTCCCTCCCAATTG 59.109 55.000 0.00 0.00 0.00 2.32
1904 2632 1.821136 GTGCTTCCCTCCCAATTGAAG 59.179 52.381 7.12 3.95 37.78 3.02
1908 2636 0.850883 TCCCTCCCAATTGAAGGGCT 60.851 55.000 28.35 0.00 46.36 5.19
1912 2640 2.234661 CCTCCCAATTGAAGGGCTTTTC 59.765 50.000 7.12 0.00 46.36 2.29
1913 2641 3.168292 CTCCCAATTGAAGGGCTTTTCT 58.832 45.455 7.12 0.00 46.36 2.52
1915 2643 4.746466 TCCCAATTGAAGGGCTTTTCTTA 58.254 39.130 7.12 0.00 46.36 2.10
1916 2644 4.526650 TCCCAATTGAAGGGCTTTTCTTAC 59.473 41.667 7.12 0.00 46.36 2.34
1917 2645 4.283212 CCCAATTGAAGGGCTTTTCTTACA 59.717 41.667 7.12 0.00 39.96 2.41
1924 2661 7.034685 TGAAGGGCTTTTCTTACAACTTAAC 57.965 36.000 4.45 0.00 0.00 2.01
1944 2681 9.840427 ACTTAACATAATTGAATTTCTCAACCG 57.160 29.630 0.00 0.00 46.80 4.44
1948 2685 7.483307 ACATAATTGAATTTCTCAACCGATGG 58.517 34.615 0.00 0.00 46.80 3.51
1953 2690 5.009631 TGAATTTCTCAACCGATGGTTCAT 58.990 37.500 0.00 0.00 43.05 2.57
1972 2709 6.702165 GTTCATTGAACACATGCCTTTTGCA 61.702 40.000 21.75 0.00 46.90 4.08
1984 2721 2.799562 GCCTTTTGCACACCTCTTGTTC 60.800 50.000 0.00 0.00 35.67 3.18
2011 2753 3.187432 GCCTGAACTTTAGTTGACAGAGC 59.813 47.826 11.02 9.33 38.56 4.09
2024 2766 3.338249 TGACAGAGCTCATGGTTTTAGC 58.662 45.455 17.77 0.00 36.48 3.09
2102 2844 1.618861 CGTTTCCGTGTTTGTGCAAA 58.381 45.000 0.00 0.00 0.00 3.68
2104 2846 3.364062 CGTTTCCGTGTTTGTGCAAATA 58.636 40.909 0.46 0.00 32.36 1.40
2122 2864 8.981647 GTGCAAATATTTCTCTGTTTGAATGTT 58.018 29.630 0.00 0.00 34.38 2.71
2192 2934 4.320567 GCTGTTTGGCTTAACTTTCCTCTC 60.321 45.833 5.04 0.00 0.00 3.20
2202 2944 7.201830 GGCTTAACTTTCCTCTCAAGTCTTTTT 60.202 37.037 0.00 0.00 33.12 1.94
2220 2962 6.851330 GTCTTTTTATCTATGCCATTACACGC 59.149 38.462 0.00 0.00 0.00 5.34
2221 2963 5.682943 TTTTATCTATGCCATTACACGCC 57.317 39.130 0.00 0.00 0.00 5.68
2259 3001 5.552870 AAAAGTCTCAGCAACTTCCTAGA 57.447 39.130 0.00 0.00 35.96 2.43
2264 3006 5.717178 AGTCTCAGCAACTTCCTAGACATTA 59.283 40.000 0.00 0.00 36.63 1.90
2271 3013 5.065218 GCAACTTCCTAGACATTACATGTGG 59.935 44.000 9.11 0.00 45.03 4.17
2281 3024 5.702670 AGACATTACATGTGGTGAAACTGAG 59.297 40.000 9.11 0.00 45.03 3.35
2286 3030 4.016444 ACATGTGGTGAAACTGAGTTTGT 58.984 39.130 16.25 2.15 35.77 2.83
2316 3060 5.124457 GCTGATGTCCATGTCAAGTGTATTT 59.876 40.000 0.00 0.00 0.00 1.40
2317 3061 6.349611 GCTGATGTCCATGTCAAGTGTATTTT 60.350 38.462 0.00 0.00 0.00 1.82
2421 3170 7.773489 TCTGCTATGCTATCTGAGTTCTTAT 57.227 36.000 0.00 0.00 0.00 1.73
2608 3441 7.117956 GCTATTCAAGATCCCCGTAGTAAATTC 59.882 40.741 0.00 0.00 0.00 2.17
2671 3504 0.647410 CTGCGAGCACATTAGTTCCG 59.353 55.000 0.00 0.00 0.00 4.30
2674 3507 1.752501 CGAGCACATTAGTTCCGCCG 61.753 60.000 0.00 0.00 0.00 6.46
2692 3525 0.798776 CGCAGCTTAGTGGAAGGTTG 59.201 55.000 0.00 0.00 43.47 3.77
2697 3530 1.073284 GCTTAGTGGAAGGTTGGTCCA 59.927 52.381 0.00 0.00 43.03 4.02
2743 3580 1.659098 GCGACCTACGATCCTTGTTTG 59.341 52.381 0.00 0.00 45.77 2.93
2751 3588 5.643777 CCTACGATCCTTGTTTGAAGTGAAT 59.356 40.000 0.00 0.00 0.00 2.57
2753 3590 7.333423 CCTACGATCCTTGTTTGAAGTGAATTA 59.667 37.037 0.00 0.00 0.00 1.40
2755 3592 7.936584 ACGATCCTTGTTTGAAGTGAATTAAA 58.063 30.769 0.00 0.00 0.00 1.52
2774 3611 9.418045 GAATTAAAGCTAGTGTTTTGCCAATTA 57.582 29.630 0.00 0.00 0.00 1.40
2776 3613 8.755696 TTAAAGCTAGTGTTTTGCCAATTATG 57.244 30.769 0.00 0.00 0.00 1.90
2778 3615 3.865164 GCTAGTGTTTTGCCAATTATGCC 59.135 43.478 0.00 0.00 0.00 4.40
2794 3631 2.631160 TGCCGAGAAAACTTCTTCCA 57.369 45.000 0.00 0.00 40.87 3.53
2795 3632 2.494059 TGCCGAGAAAACTTCTTCCAG 58.506 47.619 0.00 0.00 40.87 3.86
2830 3668 4.054780 CATTTGATGCCCCTGAAATCTG 57.945 45.455 0.00 0.00 0.00 2.90
2831 3669 3.454719 TTTGATGCCCCTGAAATCTGA 57.545 42.857 0.00 0.00 0.00 3.27
2832 3670 3.454719 TTGATGCCCCTGAAATCTGAA 57.545 42.857 0.00 0.00 0.00 3.02
2856 3694 3.703001 TGTTTGCCCTTTTGGTTTTGA 57.297 38.095 0.00 0.00 38.10 2.69
2922 3760 3.865745 GCAAGACGCAAAGATTAGCTCTA 59.134 43.478 0.00 0.00 41.79 2.43
2934 3772 8.874816 CAAAGATTAGCTCTAAAGTACCACTTC 58.125 37.037 0.00 0.00 32.78 3.01
2948 3786 7.973048 AGTACCACTTCATTAACCTCTATCA 57.027 36.000 0.00 0.00 0.00 2.15
2950 3788 7.839705 AGTACCACTTCATTAACCTCTATCAGA 59.160 37.037 0.00 0.00 0.00 3.27
2957 3795 9.270640 CTTCATTAACCTCTATCAGAATCCAAG 57.729 37.037 0.00 0.00 0.00 3.61
2976 3825 2.544721 AGTGACACCTCATGGACAGAT 58.455 47.619 0.84 0.00 37.04 2.90
2977 3826 2.235650 AGTGACACCTCATGGACAGATG 59.764 50.000 0.84 0.00 37.04 2.90
2989 3842 2.228059 GGACAGATGGGCATGATTGAG 58.772 52.381 0.00 0.00 0.00 3.02
3011 3864 4.339814 AGGGATGATCGTAACTCAAGAGAC 59.660 45.833 3.73 0.00 0.00 3.36
3023 3876 1.203287 TCAAGAGACTGGACATGCTCG 59.797 52.381 0.00 0.00 32.80 5.03
3029 3882 1.728971 GACTGGACATGCTCGTTTCTG 59.271 52.381 0.00 0.00 0.00 3.02
3038 3892 3.934457 TGCTCGTTTCTGTGACATCTA 57.066 42.857 0.00 0.00 0.00 1.98
3045 3899 7.525688 TCGTTTCTGTGACATCTATTTGATC 57.474 36.000 0.00 0.00 32.05 2.92
3084 3938 4.041617 TGCAACAGCAGTACGTGG 57.958 55.556 0.00 0.00 33.59 4.94
3096 3950 2.030185 CAGTACGTGGTCTGTTGTAGCT 60.030 50.000 0.00 0.00 0.00 3.32
3106 3965 4.487019 GTCTGTTGTAGCTTGTACCTCTC 58.513 47.826 0.00 0.00 0.00 3.20
3131 3990 9.309224 TCTTTAGGACAATCGGATATCATTCTA 57.691 33.333 4.83 0.00 0.00 2.10
3132 3991 9.360093 CTTTAGGACAATCGGATATCATTCTAC 57.640 37.037 4.83 0.00 0.00 2.59
3133 3992 6.918067 AGGACAATCGGATATCATTCTACA 57.082 37.500 4.83 0.00 0.00 2.74
3134 3993 6.929625 AGGACAATCGGATATCATTCTACAG 58.070 40.000 4.83 0.00 0.00 2.74
3188 4047 7.610305 ACTTTATCATTTGGTTAGTAGTGGGTG 59.390 37.037 0.00 0.00 0.00 4.61
3200 4059 3.578716 AGTAGTGGGTGGATGGATTATCG 59.421 47.826 0.00 0.00 36.62 2.92
3256 4115 8.939201 AGATGTATGATTCGTATGATTCATCC 57.061 34.615 20.34 13.02 41.74 3.51
3257 4116 7.984050 AGATGTATGATTCGTATGATTCATCCC 59.016 37.037 20.34 14.58 41.74 3.85
3269 4128 2.905415 TTCATCCCTGCTGAATGGTT 57.095 45.000 0.00 0.00 0.00 3.67
3271 4130 3.173953 TCATCCCTGCTGAATGGTTTT 57.826 42.857 0.00 0.00 0.00 2.43
3339 4198 9.325198 ACTACAAATTCCCAAATCTTTGAAAAC 57.675 29.630 4.25 0.00 40.55 2.43
3340 4199 9.323985 CTACAAATTCCCAAATCTTTGAAAACA 57.676 29.630 4.25 0.00 40.55 2.83
3341 4200 7.984391 ACAAATTCCCAAATCTTTGAAAACAC 58.016 30.769 4.25 0.00 40.55 3.32
3342 4201 7.609532 ACAAATTCCCAAATCTTTGAAAACACA 59.390 29.630 4.25 0.00 40.55 3.72
3343 4202 8.623030 CAAATTCCCAAATCTTTGAAAACACAT 58.377 29.630 4.25 0.00 40.55 3.21
3344 4203 8.750515 AATTCCCAAATCTTTGAAAACACATT 57.249 26.923 4.25 0.00 40.55 2.71
3345 4204 9.844257 AATTCCCAAATCTTTGAAAACACATTA 57.156 25.926 4.25 0.00 40.55 1.90
3347 4206 9.844257 TTCCCAAATCTTTGAAAACACATTATT 57.156 25.926 4.25 0.00 40.55 1.40
3348 4207 9.487790 TCCCAAATCTTTGAAAACACATTATTC 57.512 29.630 4.25 0.00 40.55 1.75
3349 4208 8.434661 CCCAAATCTTTGAAAACACATTATTCG 58.565 33.333 4.25 0.00 40.55 3.34
3350 4209 9.190858 CCAAATCTTTGAAAACACATTATTCGA 57.809 29.630 4.25 0.00 40.55 3.71
3355 4214 9.445786 TCTTTGAAAACACATTATTCGAAGAAC 57.554 29.630 7.48 0.00 44.58 3.01
3356 4215 9.232082 CTTTGAAAACACATTATTCGAAGAACA 57.768 29.630 7.48 0.00 45.90 3.18
3357 4216 9.743057 TTTGAAAACACATTATTCGAAGAACAT 57.257 25.926 7.48 0.00 45.90 2.71
3358 4217 9.743057 TTGAAAACACATTATTCGAAGAACATT 57.257 25.926 7.48 0.00 45.90 2.71
3359 4218 9.179552 TGAAAACACATTATTCGAAGAACATTG 57.820 29.630 7.48 5.27 45.90 2.82
3360 4219 7.566858 AAACACATTATTCGAAGAACATTGC 57.433 32.000 7.48 0.00 45.90 3.56
3361 4220 6.500684 ACACATTATTCGAAGAACATTGCT 57.499 33.333 7.48 0.00 45.90 3.91
3362 4221 7.609760 ACACATTATTCGAAGAACATTGCTA 57.390 32.000 7.48 0.00 45.90 3.49
3363 4222 7.688372 ACACATTATTCGAAGAACATTGCTAG 58.312 34.615 7.48 0.19 45.90 3.42
3364 4223 7.549134 ACACATTATTCGAAGAACATTGCTAGA 59.451 33.333 7.48 0.00 45.90 2.43
3365 4224 8.554528 CACATTATTCGAAGAACATTGCTAGAT 58.445 33.333 7.48 0.00 45.90 1.98
3366 4225 8.554528 ACATTATTCGAAGAACATTGCTAGATG 58.445 33.333 7.48 0.95 45.90 2.90
3367 4226 5.998454 ATTCGAAGAACATTGCTAGATGG 57.002 39.130 3.35 0.00 45.90 3.51
3368 4227 4.736126 TCGAAGAACATTGCTAGATGGA 57.264 40.909 0.00 0.00 0.00 3.41
3369 4228 4.433615 TCGAAGAACATTGCTAGATGGAC 58.566 43.478 0.00 0.00 0.00 4.02
3370 4229 3.243877 CGAAGAACATTGCTAGATGGACG 59.756 47.826 0.00 0.00 0.00 4.79
3371 4230 4.433615 GAAGAACATTGCTAGATGGACGA 58.566 43.478 0.00 0.00 0.00 4.20
3372 4231 3.786635 AGAACATTGCTAGATGGACGAC 58.213 45.455 0.00 0.00 0.00 4.34
3373 4232 3.195610 AGAACATTGCTAGATGGACGACA 59.804 43.478 0.00 0.00 0.00 4.35
3374 4233 3.170791 ACATTGCTAGATGGACGACAG 57.829 47.619 0.00 0.00 0.00 3.51
3375 4234 2.497675 ACATTGCTAGATGGACGACAGT 59.502 45.455 0.00 0.00 0.00 3.55
3376 4235 3.055819 ACATTGCTAGATGGACGACAGTT 60.056 43.478 0.00 0.00 0.00 3.16
3377 4236 2.941453 TGCTAGATGGACGACAGTTC 57.059 50.000 0.00 0.00 0.00 3.01
3378 4237 1.476891 TGCTAGATGGACGACAGTTCC 59.523 52.381 0.00 0.00 0.00 3.62
3379 4238 1.534175 GCTAGATGGACGACAGTTCCG 60.534 57.143 0.00 0.00 0.00 4.30
3380 4239 1.065701 CTAGATGGACGACAGTTCCGG 59.934 57.143 0.00 0.00 0.00 5.14
3381 4240 0.611062 AGATGGACGACAGTTCCGGA 60.611 55.000 0.00 0.00 0.00 5.14
3382 4241 0.458025 GATGGACGACAGTTCCGGAC 60.458 60.000 1.83 0.00 0.00 4.79
3383 4242 2.126580 GGACGACAGTTCCGGACG 60.127 66.667 1.83 6.78 0.00 4.79
3384 4243 2.620112 GGACGACAGTTCCGGACGA 61.620 63.158 17.20 0.00 0.00 4.20
3385 4244 1.441682 GACGACAGTTCCGGACGAC 60.442 63.158 17.20 8.27 0.00 4.34
3386 4245 2.121564 GACGACAGTTCCGGACGACA 62.122 60.000 17.20 0.00 0.00 4.35
3387 4246 1.728426 CGACAGTTCCGGACGACAC 60.728 63.158 1.83 0.00 0.00 3.67
3388 4247 1.728426 GACAGTTCCGGACGACACG 60.728 63.158 1.83 0.00 0.00 4.49
3389 4248 3.103911 CAGTTCCGGACGACACGC 61.104 66.667 1.83 0.00 0.00 5.34
3390 4249 3.292936 AGTTCCGGACGACACGCT 61.293 61.111 1.83 0.00 0.00 5.07
3391 4250 1.968017 AGTTCCGGACGACACGCTA 60.968 57.895 1.83 0.00 0.00 4.26
3392 4251 1.138247 GTTCCGGACGACACGCTAT 59.862 57.895 1.83 0.00 0.00 2.97
3393 4252 0.378257 GTTCCGGACGACACGCTATA 59.622 55.000 1.83 0.00 0.00 1.31
3394 4253 1.002033 GTTCCGGACGACACGCTATAT 60.002 52.381 1.83 0.00 0.00 0.86
3395 4254 0.870393 TCCGGACGACACGCTATATC 59.130 55.000 0.00 0.00 0.00 1.63
3396 4255 0.873054 CCGGACGACACGCTATATCT 59.127 55.000 0.00 0.00 0.00 1.98
3397 4256 2.071540 CCGGACGACACGCTATATCTA 58.928 52.381 0.00 0.00 0.00 1.98
3398 4257 2.481568 CCGGACGACACGCTATATCTAA 59.518 50.000 0.00 0.00 0.00 2.10
3399 4258 3.477122 CGGACGACACGCTATATCTAAC 58.523 50.000 0.00 0.00 0.00 2.34
3400 4259 3.059393 CGGACGACACGCTATATCTAACA 60.059 47.826 0.00 0.00 0.00 2.41
3401 4260 4.553351 CGGACGACACGCTATATCTAACAA 60.553 45.833 0.00 0.00 0.00 2.83
3402 4261 5.458891 GGACGACACGCTATATCTAACAAT 58.541 41.667 0.00 0.00 0.00 2.71
3403 4262 5.568296 GGACGACACGCTATATCTAACAATC 59.432 44.000 0.00 0.00 0.00 2.67
3404 4263 5.458891 ACGACACGCTATATCTAACAATCC 58.541 41.667 0.00 0.00 0.00 3.01
3405 4264 4.553815 CGACACGCTATATCTAACAATCCG 59.446 45.833 0.00 0.00 0.00 4.18
3406 4265 5.449107 ACACGCTATATCTAACAATCCGT 57.551 39.130 0.00 0.00 0.00 4.69
3407 4266 5.220381 ACACGCTATATCTAACAATCCGTG 58.780 41.667 7.65 7.65 46.07 4.94
3408 4267 4.621460 CACGCTATATCTAACAATCCGTGG 59.379 45.833 0.00 0.00 39.61 4.94
3409 4268 4.174009 CGCTATATCTAACAATCCGTGGG 58.826 47.826 0.00 0.00 0.00 4.61
3410 4269 3.933332 GCTATATCTAACAATCCGTGGGC 59.067 47.826 0.00 0.00 0.00 5.36
3411 4270 4.562757 GCTATATCTAACAATCCGTGGGCA 60.563 45.833 0.00 0.00 0.00 5.36
3412 4271 2.799126 ATCTAACAATCCGTGGGCAA 57.201 45.000 0.00 0.00 0.00 4.52
3413 4272 2.107950 TCTAACAATCCGTGGGCAAG 57.892 50.000 0.00 0.00 0.00 4.01
3414 4273 1.349688 TCTAACAATCCGTGGGCAAGT 59.650 47.619 0.00 0.00 0.00 3.16
3415 4274 1.737793 CTAACAATCCGTGGGCAAGTC 59.262 52.381 0.00 0.00 0.00 3.01
3416 4275 0.110486 AACAATCCGTGGGCAAGTCT 59.890 50.000 0.00 0.00 0.00 3.24
3417 4276 0.981183 ACAATCCGTGGGCAAGTCTA 59.019 50.000 0.00 0.00 0.00 2.59
3418 4277 1.338769 ACAATCCGTGGGCAAGTCTAC 60.339 52.381 0.00 0.00 0.00 2.59
3419 4278 0.981183 AATCCGTGGGCAAGTCTACA 59.019 50.000 0.00 0.00 0.00 2.74
3420 4279 0.249398 ATCCGTGGGCAAGTCTACAC 59.751 55.000 0.00 0.00 0.00 2.90
3421 4280 1.375523 CCGTGGGCAAGTCTACACC 60.376 63.158 0.00 0.00 0.00 4.16
3422 4281 1.736645 CGTGGGCAAGTCTACACCG 60.737 63.158 0.00 0.00 0.00 4.94
3423 4282 1.370064 GTGGGCAAGTCTACACCGT 59.630 57.895 0.00 0.00 0.00 4.83
3424 4283 0.604578 GTGGGCAAGTCTACACCGTA 59.395 55.000 0.00 0.00 0.00 4.02
3425 4284 0.892755 TGGGCAAGTCTACACCGTAG 59.107 55.000 0.00 0.00 0.00 3.51
3426 4285 0.459759 GGGCAAGTCTACACCGTAGC 60.460 60.000 0.00 0.00 0.00 3.58
3427 4286 0.245539 GGCAAGTCTACACCGTAGCA 59.754 55.000 0.00 0.00 0.00 3.49
3428 4287 1.134788 GGCAAGTCTACACCGTAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
3429 4288 2.100252 GGCAAGTCTACACCGTAGCATA 59.900 50.000 0.00 0.00 0.00 3.14
3430 4289 3.114065 GCAAGTCTACACCGTAGCATAC 58.886 50.000 0.00 0.00 38.50 2.39
3442 4301 3.861569 GTAGCATACGGTTTGATCAGC 57.138 47.619 2.63 0.00 0.00 4.26
3443 4302 1.668419 AGCATACGGTTTGATCAGCC 58.332 50.000 2.63 7.99 0.00 4.85
3447 4306 4.277239 CGGTTTGATCAGCCGTCA 57.723 55.556 24.06 0.00 40.53 4.35
3448 4307 2.081526 CGGTTTGATCAGCCGTCAG 58.918 57.895 24.06 5.16 40.53 3.51
3449 4308 1.361668 CGGTTTGATCAGCCGTCAGG 61.362 60.000 24.06 4.87 40.53 3.86
3450 4309 0.321653 GGTTTGATCAGCCGTCAGGT 60.322 55.000 0.00 0.00 40.50 4.00
3451 4310 0.798776 GTTTGATCAGCCGTCAGGTG 59.201 55.000 0.00 0.00 45.72 4.00
3457 4316 3.052081 AGCCGTCAGGTGAGTGTC 58.948 61.111 0.00 0.00 40.50 3.67
3458 4317 2.430921 GCCGTCAGGTGAGTGTCG 60.431 66.667 0.00 0.00 40.50 4.35
3459 4318 3.039988 CCGTCAGGTGAGTGTCGT 58.960 61.111 0.00 0.00 0.00 4.34
3460 4319 1.081376 CCGTCAGGTGAGTGTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
3461 4320 1.081376 CGTCAGGTGAGTGTCGTCC 60.081 63.158 0.00 0.00 0.00 4.79
3462 4321 1.792118 CGTCAGGTGAGTGTCGTCCA 61.792 60.000 0.00 0.00 0.00 4.02
3463 4322 0.039074 GTCAGGTGAGTGTCGTCCAG 60.039 60.000 0.00 0.00 0.00 3.86
3464 4323 1.373497 CAGGTGAGTGTCGTCCAGC 60.373 63.158 0.00 0.00 0.00 4.85
3465 4324 2.048127 GGTGAGTGTCGTCCAGCC 60.048 66.667 0.00 0.00 0.00 4.85
3466 4325 2.430921 GTGAGTGTCGTCCAGCCG 60.431 66.667 0.00 0.00 0.00 5.52
3467 4326 2.596338 TGAGTGTCGTCCAGCCGA 60.596 61.111 0.00 0.00 33.79 5.54
3468 4327 2.197605 TGAGTGTCGTCCAGCCGAA 61.198 57.895 0.00 0.00 38.80 4.30
3469 4328 1.733399 GAGTGTCGTCCAGCCGAAC 60.733 63.158 0.00 0.00 38.80 3.95
3470 4329 2.028484 GTGTCGTCCAGCCGAACA 59.972 61.111 0.00 0.00 38.80 3.18
3471 4330 1.374252 GTGTCGTCCAGCCGAACAT 60.374 57.895 0.00 0.00 38.80 2.71
3472 4331 1.080093 TGTCGTCCAGCCGAACATC 60.080 57.895 0.00 0.00 38.80 3.06
3473 4332 2.158959 GTCGTCCAGCCGAACATCG 61.159 63.158 0.00 0.00 38.80 3.84
3474 4333 2.126071 CGTCCAGCCGAACATCGT 60.126 61.111 0.00 0.00 38.40 3.73
3475 4334 2.158959 CGTCCAGCCGAACATCGTC 61.159 63.158 0.00 0.00 38.40 4.20
3476 4335 1.810030 GTCCAGCCGAACATCGTCC 60.810 63.158 0.00 0.00 38.40 4.79
3477 4336 2.511600 CCAGCCGAACATCGTCCC 60.512 66.667 0.00 0.00 38.40 4.46
3478 4337 2.579201 CAGCCGAACATCGTCCCT 59.421 61.111 0.00 0.00 38.40 4.20
3479 4338 1.811266 CAGCCGAACATCGTCCCTG 60.811 63.158 0.00 0.00 38.40 4.45
3480 4339 1.982395 AGCCGAACATCGTCCCTGA 60.982 57.895 0.00 0.00 38.40 3.86
3481 4340 1.079405 GCCGAACATCGTCCCTGAA 60.079 57.895 0.00 0.00 38.40 3.02
3482 4341 1.084370 GCCGAACATCGTCCCTGAAG 61.084 60.000 0.00 0.00 38.40 3.02
3483 4342 0.246635 CCGAACATCGTCCCTGAAGT 59.753 55.000 0.00 0.00 38.40 3.01
3484 4343 1.475280 CCGAACATCGTCCCTGAAGTA 59.525 52.381 0.00 0.00 38.40 2.24
3485 4344 2.527100 CGAACATCGTCCCTGAAGTAC 58.473 52.381 0.00 0.00 34.72 2.73
3486 4345 2.163815 CGAACATCGTCCCTGAAGTACT 59.836 50.000 0.00 0.00 34.72 2.73
3487 4346 3.367087 CGAACATCGTCCCTGAAGTACTT 60.367 47.826 8.13 8.13 34.72 2.24
3488 4347 3.870633 ACATCGTCCCTGAAGTACTTC 57.129 47.619 25.73 25.73 39.91 3.01
3489 4348 3.162666 ACATCGTCCCTGAAGTACTTCA 58.837 45.455 31.11 31.11 46.27 3.02
3490 4349 3.056749 ACATCGTCCCTGAAGTACTTCAC 60.057 47.826 30.07 20.30 43.90 3.18
3515 4374 8.765219 ACTTATTCGAATGACACATAATAGTGC 58.235 33.333 20.87 0.00 43.23 4.40
3516 4375 8.887036 TTATTCGAATGACACATAATAGTGCT 57.113 30.769 20.87 0.00 43.23 4.40
3538 4397 7.172361 GTGCTCCAGAAATTTACCATCTAGATC 59.828 40.741 1.03 0.00 0.00 2.75
3539 4398 6.652900 GCTCCAGAAATTTACCATCTAGATCC 59.347 42.308 1.03 0.00 0.00 3.36
3540 4399 7.474079 GCTCCAGAAATTTACCATCTAGATCCT 60.474 40.741 1.03 0.00 0.00 3.24
3549 4408 3.972638 ACCATCTAGATCCTGCAGAACAT 59.027 43.478 17.39 3.67 0.00 2.71
3565 4424 7.363431 TGCAGAACATATCTATGACTACGAAG 58.637 38.462 4.26 0.00 36.32 3.79
3575 4434 8.723942 ATCTATGACTACGAAGAAGCAAAAAT 57.276 30.769 0.00 0.00 0.00 1.82
3590 4449 4.813697 AGCAAAAATCTAGAGCGAAGGATC 59.186 41.667 0.00 0.00 0.00 3.36
3612 4471 4.555709 ACTTGGCCGGCGAACACA 62.556 61.111 20.90 9.22 0.00 3.72
3621 4480 3.335534 GCGAACACAACGACGCCT 61.336 61.111 0.00 0.00 44.27 5.52
3660 4519 1.444933 AGAACATGAAGGGGTGGTCA 58.555 50.000 0.00 0.00 34.52 4.02
3665 4524 1.274703 ATGAAGGGGTGGTCAGCGAT 61.275 55.000 0.00 0.00 0.00 4.58
3693 4552 1.016130 CGTAGTTGACTGGCCTGCTG 61.016 60.000 9.95 0.00 0.00 4.41
3697 4556 2.821518 TTGACTGGCCTGCTGCAGA 61.822 57.895 30.10 10.22 43.89 4.26
3714 4573 2.048877 ACCGCCGAACAACTACCG 60.049 61.111 0.00 0.00 0.00 4.02
3718 4577 0.860533 CGCCGAACAACTACCGAAAA 59.139 50.000 0.00 0.00 0.00 2.29
3719 4578 1.461897 CGCCGAACAACTACCGAAAAT 59.538 47.619 0.00 0.00 0.00 1.82
3720 4579 2.667481 CGCCGAACAACTACCGAAAATA 59.333 45.455 0.00 0.00 0.00 1.40
3847 4709 1.686052 TGTGTTCCAAATCCAGCAACC 59.314 47.619 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.811017 TGGTTGTTTGATATTAATGACACCAAT 58.189 29.630 0.00 0.00 0.00 3.16
7 8 8.183104 TGGTTGTTTGATATTAATGACACCAA 57.817 30.769 0.00 2.21 0.00 3.67
8 9 7.767250 TGGTTGTTTGATATTAATGACACCA 57.233 32.000 0.00 0.00 0.00 4.17
9 10 7.222611 GCATGGTTGTTTGATATTAATGACACC 59.777 37.037 0.00 0.00 0.00 4.16
10 11 7.758980 TGCATGGTTGTTTGATATTAATGACAC 59.241 33.333 0.00 0.00 0.00 3.67
11 12 7.834803 TGCATGGTTGTTTGATATTAATGACA 58.165 30.769 0.00 0.00 0.00 3.58
12 13 8.876275 ATGCATGGTTGTTTGATATTAATGAC 57.124 30.769 0.00 0.00 0.00 3.06
13 14 9.964303 GTATGCATGGTTGTTTGATATTAATGA 57.036 29.630 10.16 0.00 0.00 2.57
14 15 9.195411 GGTATGCATGGTTGTTTGATATTAATG 57.805 33.333 10.16 0.00 0.00 1.90
15 16 9.146586 AGGTATGCATGGTTGTTTGATATTAAT 57.853 29.630 10.16 0.00 0.00 1.40
16 17 8.532186 AGGTATGCATGGTTGTTTGATATTAA 57.468 30.769 10.16 0.00 0.00 1.40
17 18 9.806448 ATAGGTATGCATGGTTGTTTGATATTA 57.194 29.630 10.16 0.00 0.00 0.98
18 19 8.710749 ATAGGTATGCATGGTTGTTTGATATT 57.289 30.769 10.16 0.00 0.00 1.28
19 20 7.394359 GGATAGGTATGCATGGTTGTTTGATAT 59.606 37.037 10.16 0.00 0.00 1.63
20 21 6.714810 GGATAGGTATGCATGGTTGTTTGATA 59.285 38.462 10.16 0.00 0.00 2.15
21 22 5.536161 GGATAGGTATGCATGGTTGTTTGAT 59.464 40.000 10.16 0.00 0.00 2.57
22 23 4.887071 GGATAGGTATGCATGGTTGTTTGA 59.113 41.667 10.16 0.00 0.00 2.69
23 24 4.644234 TGGATAGGTATGCATGGTTGTTTG 59.356 41.667 10.16 0.00 0.00 2.93
24 25 4.865905 TGGATAGGTATGCATGGTTGTTT 58.134 39.130 10.16 0.00 0.00 2.83
25 26 4.518278 TGGATAGGTATGCATGGTTGTT 57.482 40.909 10.16 0.00 0.00 2.83
26 27 4.729552 ATGGATAGGTATGCATGGTTGT 57.270 40.909 10.16 0.00 42.14 3.32
27 28 5.824624 GGATATGGATAGGTATGCATGGTTG 59.175 44.000 10.16 0.00 43.30 3.77
28 29 5.103940 GGGATATGGATAGGTATGCATGGTT 60.104 44.000 10.16 0.00 43.30 3.67
29 30 4.413520 GGGATATGGATAGGTATGCATGGT 59.586 45.833 10.16 3.46 43.30 3.55
30 31 4.202503 GGGGATATGGATAGGTATGCATGG 60.203 50.000 10.16 0.00 43.30 3.66
31 32 4.662179 AGGGGATATGGATAGGTATGCATG 59.338 45.833 10.16 0.00 43.30 4.06
32 33 4.912982 AGGGGATATGGATAGGTATGCAT 58.087 43.478 3.79 3.79 45.06 3.96
33 34 4.368240 AGGGGATATGGATAGGTATGCA 57.632 45.455 0.00 0.00 38.40 3.96
34 35 4.721776 TCAAGGGGATATGGATAGGTATGC 59.278 45.833 0.00 0.00 0.00 3.14
35 36 6.891306 TTCAAGGGGATATGGATAGGTATG 57.109 41.667 0.00 0.00 0.00 2.39
36 37 8.362998 ACTATTCAAGGGGATATGGATAGGTAT 58.637 37.037 6.15 0.00 38.79 2.73
37 38 7.729350 ACTATTCAAGGGGATATGGATAGGTA 58.271 38.462 6.15 0.00 38.79 3.08
38 39 6.584950 ACTATTCAAGGGGATATGGATAGGT 58.415 40.000 6.15 0.00 38.79 3.08
39 40 6.673978 TGACTATTCAAGGGGATATGGATAGG 59.326 42.308 6.15 0.00 38.79 2.57
40 41 7.739995 TGACTATTCAAGGGGATATGGATAG 57.260 40.000 0.00 0.00 39.86 2.08
41 42 8.700145 ATTGACTATTCAAGGGGATATGGATA 57.300 34.615 1.80 0.00 45.07 2.59
42 43 7.594849 ATTGACTATTCAAGGGGATATGGAT 57.405 36.000 1.80 0.00 45.07 3.41
43 44 7.515861 TGTATTGACTATTCAAGGGGATATGGA 59.484 37.037 1.80 0.00 45.07 3.41
44 45 7.607991 GTGTATTGACTATTCAAGGGGATATGG 59.392 40.741 1.80 0.00 45.07 2.74
45 46 7.607991 GGTGTATTGACTATTCAAGGGGATATG 59.392 40.741 1.80 0.00 45.07 1.78
46 47 7.517604 AGGTGTATTGACTATTCAAGGGGATAT 59.482 37.037 1.80 0.00 45.07 1.63
47 48 6.849697 AGGTGTATTGACTATTCAAGGGGATA 59.150 38.462 1.80 0.00 45.07 2.59
48 49 5.672194 AGGTGTATTGACTATTCAAGGGGAT 59.328 40.000 1.80 0.00 45.07 3.85
49 50 5.036916 AGGTGTATTGACTATTCAAGGGGA 58.963 41.667 1.80 0.00 45.07 4.81
50 51 5.373812 AGGTGTATTGACTATTCAAGGGG 57.626 43.478 1.80 0.00 45.07 4.79
51 52 6.884832 TGTAGGTGTATTGACTATTCAAGGG 58.115 40.000 1.80 0.00 45.07 3.95
52 53 8.041323 AGTTGTAGGTGTATTGACTATTCAAGG 58.959 37.037 1.80 0.00 45.07 3.61
53 54 9.088512 GAGTTGTAGGTGTATTGACTATTCAAG 57.911 37.037 1.80 0.00 45.07 3.02
54 55 8.590204 TGAGTTGTAGGTGTATTGACTATTCAA 58.410 33.333 0.00 0.00 45.93 2.69
55 56 8.129496 TGAGTTGTAGGTGTATTGACTATTCA 57.871 34.615 0.00 0.00 0.00 2.57
56 57 8.251721 ACTGAGTTGTAGGTGTATTGACTATTC 58.748 37.037 0.00 0.00 0.00 1.75
57 58 8.135382 ACTGAGTTGTAGGTGTATTGACTATT 57.865 34.615 0.00 0.00 0.00 1.73
58 59 7.396339 TGACTGAGTTGTAGGTGTATTGACTAT 59.604 37.037 0.00 0.00 0.00 2.12
59 60 6.717997 TGACTGAGTTGTAGGTGTATTGACTA 59.282 38.462 0.00 0.00 0.00 2.59
60 61 5.538813 TGACTGAGTTGTAGGTGTATTGACT 59.461 40.000 0.00 0.00 0.00 3.41
61 62 5.779922 TGACTGAGTTGTAGGTGTATTGAC 58.220 41.667 0.00 0.00 0.00 3.18
62 63 6.605471 ATGACTGAGTTGTAGGTGTATTGA 57.395 37.500 0.00 0.00 0.00 2.57
63 64 7.672983 AAATGACTGAGTTGTAGGTGTATTG 57.327 36.000 0.00 0.00 0.00 1.90
64 65 9.216117 GTTAAATGACTGAGTTGTAGGTGTATT 57.784 33.333 0.00 0.00 0.00 1.89
65 66 8.594550 AGTTAAATGACTGAGTTGTAGGTGTAT 58.405 33.333 0.00 0.00 0.00 2.29
66 67 7.959175 AGTTAAATGACTGAGTTGTAGGTGTA 58.041 34.615 0.00 0.00 0.00 2.90
67 68 6.827727 AGTTAAATGACTGAGTTGTAGGTGT 58.172 36.000 0.00 0.00 0.00 4.16
68 69 8.304596 TCTAGTTAAATGACTGAGTTGTAGGTG 58.695 37.037 0.00 0.00 0.00 4.00
69 70 8.418597 TCTAGTTAAATGACTGAGTTGTAGGT 57.581 34.615 0.00 0.00 0.00 3.08
96 97 8.929260 TGGCTAAATGATCATAAATGTCAGAT 57.071 30.769 9.04 0.00 0.00 2.90
97 98 7.040892 GCTGGCTAAATGATCATAAATGTCAGA 60.041 37.037 24.02 2.59 0.00 3.27
98 99 7.040617 AGCTGGCTAAATGATCATAAATGTCAG 60.041 37.037 19.32 19.32 0.00 3.51
99 100 6.774170 AGCTGGCTAAATGATCATAAATGTCA 59.226 34.615 9.04 6.80 0.00 3.58
100 101 7.040892 TGAGCTGGCTAAATGATCATAAATGTC 60.041 37.037 9.04 2.40 0.00 3.06
101 102 6.774170 TGAGCTGGCTAAATGATCATAAATGT 59.226 34.615 9.04 0.00 0.00 2.71
102 103 7.210718 TGAGCTGGCTAAATGATCATAAATG 57.789 36.000 9.04 1.41 0.00 2.32
103 104 7.828508 TTGAGCTGGCTAAATGATCATAAAT 57.171 32.000 9.04 1.27 0.00 1.40
104 105 7.643569 TTTGAGCTGGCTAAATGATCATAAA 57.356 32.000 9.04 0.00 0.00 1.40
105 106 7.643569 TTTTGAGCTGGCTAAATGATCATAA 57.356 32.000 9.04 0.00 0.00 1.90
106 107 7.340232 ACTTTTTGAGCTGGCTAAATGATCATA 59.660 33.333 9.04 0.00 0.00 2.15
107 108 6.154021 ACTTTTTGAGCTGGCTAAATGATCAT 59.846 34.615 1.18 1.18 0.00 2.45
108 109 5.477984 ACTTTTTGAGCTGGCTAAATGATCA 59.522 36.000 0.00 0.00 0.00 2.92
109 110 5.958955 ACTTTTTGAGCTGGCTAAATGATC 58.041 37.500 0.00 0.00 0.00 2.92
110 111 5.990120 ACTTTTTGAGCTGGCTAAATGAT 57.010 34.783 0.00 0.00 0.00 2.45
111 112 6.237901 TCTACTTTTTGAGCTGGCTAAATGA 58.762 36.000 0.00 0.00 0.00 2.57
112 113 6.500684 TCTACTTTTTGAGCTGGCTAAATG 57.499 37.500 0.00 0.00 0.00 2.32
113 114 7.613411 AGATTCTACTTTTTGAGCTGGCTAAAT 59.387 33.333 0.00 0.00 0.00 1.40
114 115 6.942576 AGATTCTACTTTTTGAGCTGGCTAAA 59.057 34.615 0.00 0.00 0.00 1.85
115 116 6.476378 AGATTCTACTTTTTGAGCTGGCTAA 58.524 36.000 0.00 0.00 0.00 3.09
116 117 6.054860 AGATTCTACTTTTTGAGCTGGCTA 57.945 37.500 0.00 0.00 0.00 3.93
117 118 4.916183 AGATTCTACTTTTTGAGCTGGCT 58.084 39.130 0.00 0.00 0.00 4.75
118 119 5.635417 AAGATTCTACTTTTTGAGCTGGC 57.365 39.130 0.00 0.00 0.00 4.85
128 129 6.959639 TGCAGGTCAAAAAGATTCTACTTT 57.040 33.333 0.00 0.00 41.09 2.66
129 130 7.530426 AATGCAGGTCAAAAAGATTCTACTT 57.470 32.000 0.00 0.00 0.00 2.24
130 131 8.814038 ATAATGCAGGTCAAAAAGATTCTACT 57.186 30.769 0.00 0.00 0.00 2.57
131 132 9.294030 CAATAATGCAGGTCAAAAAGATTCTAC 57.706 33.333 0.00 0.00 0.00 2.59
148 149 7.424803 GTATCCAATACAACTGCAATAATGCA 58.575 34.615 5.16 5.16 46.15 3.96
149 150 7.651808 AGTATCCAATACAACTGCAATAATGC 58.348 34.615 0.00 0.00 44.31 3.56
152 153 9.674068 TGTAAGTATCCAATACAACTGCAATAA 57.326 29.630 0.00 0.00 38.21 1.40
153 154 9.674068 TTGTAAGTATCCAATACAACTGCAATA 57.326 29.630 0.00 0.00 38.21 1.90
154 155 8.574251 TTGTAAGTATCCAATACAACTGCAAT 57.426 30.769 0.00 0.00 38.21 3.56
155 156 7.361713 GCTTGTAAGTATCCAATACAACTGCAA 60.362 37.037 0.00 0.00 38.21 4.08
156 157 6.093495 GCTTGTAAGTATCCAATACAACTGCA 59.907 38.462 0.39 0.00 38.21 4.41
157 158 6.093495 TGCTTGTAAGTATCCAATACAACTGC 59.907 38.462 0.39 0.00 38.21 4.40
158 159 7.609760 TGCTTGTAAGTATCCAATACAACTG 57.390 36.000 0.39 0.00 38.21 3.16
159 160 8.100791 TCTTGCTTGTAAGTATCCAATACAACT 58.899 33.333 0.39 0.00 38.21 3.16
160 161 8.263940 TCTTGCTTGTAAGTATCCAATACAAC 57.736 34.615 0.39 0.00 38.21 3.32
161 162 8.892723 CATCTTGCTTGTAAGTATCCAATACAA 58.107 33.333 0.39 0.00 38.21 2.41
162 163 7.498900 CCATCTTGCTTGTAAGTATCCAATACA 59.501 37.037 0.39 0.00 38.21 2.29
163 164 7.520614 GCCATCTTGCTTGTAAGTATCCAATAC 60.521 40.741 0.00 0.00 35.99 1.89
164 165 6.486657 GCCATCTTGCTTGTAAGTATCCAATA 59.513 38.462 0.00 0.00 0.00 1.90
165 166 5.300286 GCCATCTTGCTTGTAAGTATCCAAT 59.700 40.000 0.00 0.00 0.00 3.16
166 167 4.640201 GCCATCTTGCTTGTAAGTATCCAA 59.360 41.667 0.00 0.00 0.00 3.53
167 168 4.199310 GCCATCTTGCTTGTAAGTATCCA 58.801 43.478 0.00 0.00 0.00 3.41
168 169 3.565902 GGCCATCTTGCTTGTAAGTATCC 59.434 47.826 0.00 0.00 0.00 2.59
169 170 4.199310 TGGCCATCTTGCTTGTAAGTATC 58.801 43.478 0.00 0.00 0.00 2.24
170 171 4.235079 TGGCCATCTTGCTTGTAAGTAT 57.765 40.909 0.00 0.00 0.00 2.12
171 172 3.712016 TGGCCATCTTGCTTGTAAGTA 57.288 42.857 0.00 0.00 0.00 2.24
172 173 2.584835 TGGCCATCTTGCTTGTAAGT 57.415 45.000 0.00 0.00 0.00 2.24
173 174 5.561532 CGAATATGGCCATCTTGCTTGTAAG 60.562 44.000 24.80 0.00 0.00 2.34
174 175 4.275689 CGAATATGGCCATCTTGCTTGTAA 59.724 41.667 24.80 0.00 0.00 2.41
175 176 3.814842 CGAATATGGCCATCTTGCTTGTA 59.185 43.478 24.80 0.46 0.00 2.41
176 177 2.620115 CGAATATGGCCATCTTGCTTGT 59.380 45.455 24.80 0.00 0.00 3.16
177 178 2.606308 GCGAATATGGCCATCTTGCTTG 60.606 50.000 24.80 9.23 0.00 4.01
178 179 1.610522 GCGAATATGGCCATCTTGCTT 59.389 47.619 24.80 9.22 0.00 3.91
179 180 1.242076 GCGAATATGGCCATCTTGCT 58.758 50.000 24.80 0.00 0.00 3.91
180 181 3.780925 GCGAATATGGCCATCTTGC 57.219 52.632 24.80 21.36 0.00 4.01
580 581 0.878416 GTGTGTGTGTGTTGGTGTGT 59.122 50.000 0.00 0.00 0.00 3.72
581 582 0.877743 TGTGTGTGTGTGTTGGTGTG 59.122 50.000 0.00 0.00 0.00 3.82
582 583 0.878416 GTGTGTGTGTGTGTTGGTGT 59.122 50.000 0.00 0.00 0.00 4.16
583 584 0.877743 TGTGTGTGTGTGTGTTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
584 585 0.878416 GTGTGTGTGTGTGTGTTGGT 59.122 50.000 0.00 0.00 0.00 3.67
585 586 0.877743 TGTGTGTGTGTGTGTGTTGG 59.122 50.000 0.00 0.00 0.00 3.77
586 587 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
587 588 1.598882 TGTGTGTGTGTGTGTGTGTT 58.401 45.000 0.00 0.00 0.00 3.32
588 589 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
589 590 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
590 591 2.670789 GCATTTGTGTGTGTGTGTGTGT 60.671 45.455 0.00 0.00 0.00 3.72
591 592 1.919263 GCATTTGTGTGTGTGTGTGTG 59.081 47.619 0.00 0.00 0.00 3.82
592 593 1.543358 TGCATTTGTGTGTGTGTGTGT 59.457 42.857 0.00 0.00 0.00 3.72
593 594 2.274920 TGCATTTGTGTGTGTGTGTG 57.725 45.000 0.00 0.00 0.00 3.82
594 595 2.029560 TGTTGCATTTGTGTGTGTGTGT 60.030 40.909 0.00 0.00 0.00 3.72
595 596 2.603953 TGTTGCATTTGTGTGTGTGTG 58.396 42.857 0.00 0.00 0.00 3.82
596 597 3.446799 GATGTTGCATTTGTGTGTGTGT 58.553 40.909 0.00 0.00 0.00 3.72
597 598 2.468409 CGATGTTGCATTTGTGTGTGTG 59.532 45.455 0.00 0.00 0.00 3.82
674 675 3.971971 GGGTTAGATACATAGGGGTGTGT 59.028 47.826 0.00 0.00 33.62 3.72
675 676 3.971305 TGGGTTAGATACATAGGGGTGTG 59.029 47.826 0.00 0.00 33.62 3.82
680 681 9.231297 CACATATTTTGGGTTAGATACATAGGG 57.769 37.037 0.00 0.00 0.00 3.53
709 710 9.678941 CTTCTGGTTTCTTTAGGTTATGTTTTC 57.321 33.333 0.00 0.00 0.00 2.29
710 711 9.416284 TCTTCTGGTTTCTTTAGGTTATGTTTT 57.584 29.630 0.00 0.00 0.00 2.43
712 713 8.218488 AGTCTTCTGGTTTCTTTAGGTTATGTT 58.782 33.333 0.00 0.00 0.00 2.71
716 717 7.215085 GTGAGTCTTCTGGTTTCTTTAGGTTA 58.785 38.462 0.00 0.00 0.00 2.85
742 743 2.383527 CGTGCTCAAGGCTCCGTTC 61.384 63.158 0.00 0.00 42.39 3.95
760 761 4.174129 GGCGTGGGTTGCGTATGC 62.174 66.667 0.00 0.00 43.20 3.14
766 767 1.007387 CTTCTTTGGCGTGGGTTGC 60.007 57.895 0.00 0.00 0.00 4.17
767 768 0.593128 CTCTTCTTTGGCGTGGGTTG 59.407 55.000 0.00 0.00 0.00 3.77
797 799 1.074405 TGTTGCTGATGCTTCCTTCCT 59.926 47.619 0.00 0.00 40.48 3.36
810 812 4.426416 CAATATGTGATTGGGTGTTGCTG 58.574 43.478 0.00 0.00 0.00 4.41
817 819 5.517924 TGTGATTCCAATATGTGATTGGGT 58.482 37.500 14.71 5.85 46.41 4.51
823 871 4.080413 TGAGGCTGTGATTCCAATATGTGA 60.080 41.667 0.00 0.00 0.00 3.58
830 878 1.883638 GCTGTGAGGCTGTGATTCCAA 60.884 52.381 0.00 0.00 0.00 3.53
832 880 0.321919 TGCTGTGAGGCTGTGATTCC 60.322 55.000 0.00 0.00 0.00 3.01
834 882 1.242076 GTTGCTGTGAGGCTGTGATT 58.758 50.000 0.00 0.00 0.00 2.57
835 883 0.607489 GGTTGCTGTGAGGCTGTGAT 60.607 55.000 0.00 0.00 0.00 3.06
836 884 1.227943 GGTTGCTGTGAGGCTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
837 885 2.610694 CGGTTGCTGTGAGGCTGTG 61.611 63.158 0.00 0.00 0.00 3.66
838 886 2.281070 CGGTTGCTGTGAGGCTGT 60.281 61.111 0.00 0.00 0.00 4.40
842 890 4.335647 AGCCCGGTTGCTGTGAGG 62.336 66.667 4.23 0.00 40.90 3.86
878 1365 2.208619 TTGACTCGTGGGCCGGTAA 61.209 57.895 1.90 0.00 37.11 2.85
879 1366 2.601067 TTGACTCGTGGGCCGGTA 60.601 61.111 1.90 0.00 37.11 4.02
958 1445 2.590575 GGTCGGTGGTGTGGTGTG 60.591 66.667 0.00 0.00 0.00 3.82
1197 1728 1.774254 CCCTAGAGAGAGAGAGAGGCA 59.226 57.143 0.00 0.00 0.00 4.75
1200 1731 4.127171 CGAAACCCTAGAGAGAGAGAGAG 58.873 52.174 0.00 0.00 0.00 3.20
1201 1732 3.775866 TCGAAACCCTAGAGAGAGAGAGA 59.224 47.826 0.00 0.00 0.00 3.10
1202 1733 4.145365 TCGAAACCCTAGAGAGAGAGAG 57.855 50.000 0.00 0.00 0.00 3.20
1203 1734 4.781775 ATCGAAACCCTAGAGAGAGAGA 57.218 45.455 0.00 0.00 0.00 3.10
1258 1789 1.077787 TCCGGTAAGCAATGCCCAG 60.078 57.895 0.00 0.00 0.00 4.45
1346 1877 4.332819 GCATCCGCACAGTTATTTCTACTT 59.667 41.667 0.00 0.00 38.36 2.24
1363 1894 0.040514 CTCGAGCTCTAGTGCATCCG 60.041 60.000 18.36 16.57 34.99 4.18
1387 1918 0.802494 GCGTGGTGATTTGGTACCAG 59.198 55.000 15.65 0.91 46.87 4.00
1436 1967 1.486726 ACAAGATAGGTACAGCCCTGC 59.513 52.381 0.00 0.00 38.26 4.85
1451 1982 2.420547 GCCTCCATCAGCACATACAAGA 60.421 50.000 0.00 0.00 0.00 3.02
1544 2075 0.618458 GCAAGATCCCCACCAGTACA 59.382 55.000 0.00 0.00 0.00 2.90
1617 2149 7.698130 GGTTTCACATATCAAGTAATTCAGCAC 59.302 37.037 0.00 0.00 0.00 4.40
1683 2223 1.027815 ACCAGGTAGGGAGGGAATCT 58.972 55.000 0.00 0.00 43.89 2.40
1714 2254 1.283029 ACAAGCACAGGATATGCAGGT 59.717 47.619 0.00 0.00 45.92 4.00
1745 2285 7.608376 TCCGTGAACACTCCATGAAATAATTTA 59.392 33.333 0.00 0.00 0.00 1.40
1762 2304 8.421002 TCTCTTTATAATCATCATCCGTGAACA 58.579 33.333 0.00 0.00 38.01 3.18
1799 2341 8.971321 ACGATCAATTCAGTTTCTTGAAATTTG 58.029 29.630 0.00 2.60 40.21 2.32
1823 2365 9.019764 CCACATTTAATTCAAGGCTATAAAACG 57.980 33.333 0.00 0.00 0.00 3.60
1832 2374 4.192429 AGCACCACATTTAATTCAAGGC 57.808 40.909 0.00 0.00 0.00 4.35
1861 2588 0.454600 CAAATTCATCTGCGGCTGCT 59.545 50.000 20.27 0.00 43.34 4.24
1868 2595 1.547372 AGCACACCCAAATTCATCTGC 59.453 47.619 0.00 0.00 0.00 4.26
1869 2596 3.367703 GGAAGCACACCCAAATTCATCTG 60.368 47.826 0.00 0.00 0.00 2.90
1871 2598 2.094026 GGGAAGCACACCCAAATTCATC 60.094 50.000 7.79 0.00 46.05 2.92
1895 2623 5.467035 TGTAAGAAAAGCCCTTCAATTGG 57.533 39.130 5.42 0.00 0.00 3.16
1901 2629 7.034685 TGTTAAGTTGTAAGAAAAGCCCTTC 57.965 36.000 0.00 0.00 0.00 3.46
1904 2632 9.923143 AATTATGTTAAGTTGTAAGAAAAGCCC 57.077 29.630 0.00 0.00 0.00 5.19
1924 2661 7.483307 ACCATCGGTTGAGAAATTCAATTATG 58.517 34.615 0.00 0.00 46.85 1.90
1931 2668 5.567138 ATGAACCATCGGTTGAGAAATTC 57.433 39.130 2.47 0.00 46.95 2.17
1944 2681 3.194116 AGGCATGTGTTCAATGAACCATC 59.806 43.478 21.75 15.86 41.35 3.51
1945 2682 3.167485 AGGCATGTGTTCAATGAACCAT 58.833 40.909 21.75 19.59 41.35 3.55
1948 2685 4.318974 GCAAAAGGCATGTGTTCAATGAAC 60.319 41.667 18.42 18.42 43.97 3.18
1972 2709 2.037772 CAGGCACTAGAACAAGAGGTGT 59.962 50.000 0.00 0.00 39.05 4.16
1974 2711 2.609747 TCAGGCACTAGAACAAGAGGT 58.390 47.619 0.00 0.00 36.02 3.85
1984 2721 5.297547 TGTCAACTAAAGTTCAGGCACTAG 58.702 41.667 0.00 0.00 33.62 2.57
2011 2753 4.481930 TGTCAAACGCTAAAACCATGAG 57.518 40.909 0.00 0.00 0.00 2.90
2024 2766 1.469917 CAACTGCAGCTTGTCAAACG 58.530 50.000 15.27 0.00 0.00 3.60
2094 2836 8.980610 CATTCAAACAGAGAAATATTTGCACAA 58.019 29.630 5.17 0.00 33.09 3.33
2102 2844 8.525316 TGCATGAACATTCAAACAGAGAAATAT 58.475 29.630 0.00 0.00 41.13 1.28
2104 2846 6.643770 GTGCATGAACATTCAAACAGAGAAAT 59.356 34.615 0.00 0.00 41.13 2.17
2192 2934 9.722056 GTGTAATGGCATAGATAAAAAGACTTG 57.278 33.333 0.00 0.00 0.00 3.16
2220 2962 2.791383 TTTTGTGAATCAAGCACGGG 57.209 45.000 0.00 0.00 39.07 5.28
2221 2963 3.705604 ACTTTTTGTGAATCAAGCACGG 58.294 40.909 0.00 0.00 39.07 4.94
2259 3001 6.321181 AAACTCAGTTTCACCACATGTAATGT 59.679 34.615 0.00 0.00 45.31 2.71
2264 3006 4.016444 ACAAACTCAGTTTCACCACATGT 58.984 39.130 0.00 0.00 33.10 3.21
2271 3013 5.287035 CAGCTGAAAACAAACTCAGTTTCAC 59.713 40.000 8.42 0.00 41.02 3.18
2281 3024 4.305989 TGGACATCAGCTGAAAACAAAC 57.694 40.909 22.50 8.18 0.00 2.93
2286 3030 3.753815 TGACATGGACATCAGCTGAAAA 58.246 40.909 22.50 5.07 0.00 2.29
2316 3060 7.701539 AGGAGATGCAAATACATGTAAACAA 57.298 32.000 10.14 0.00 0.00 2.83
2317 3061 7.537715 CAAGGAGATGCAAATACATGTAAACA 58.462 34.615 10.14 6.33 0.00 2.83
2333 3077 9.887629 ATTAATATGAGATACAGCAAGGAGATG 57.112 33.333 0.00 0.00 40.19 2.90
2596 3429 2.294979 GCCCTTGGGAATTTACTACGG 58.705 52.381 10.36 0.00 0.00 4.02
2608 3441 4.748144 GCTGACTGGGCCCTTGGG 62.748 72.222 25.70 12.91 0.00 4.12
2671 3504 2.109126 CCTTCCACTAAGCTGCGGC 61.109 63.158 10.33 10.33 33.49 6.53
2674 3507 1.168714 CCAACCTTCCACTAAGCTGC 58.831 55.000 0.00 0.00 33.49 5.25
2692 3525 7.172019 TCGTTTTAAGTAGATGAAAACTGGACC 59.828 37.037 7.59 0.00 39.70 4.46
2697 3530 9.878599 CAACATCGTTTTAAGTAGATGAAAACT 57.121 29.630 17.31 0.00 42.04 2.66
2743 3580 7.114953 GGCAAAACACTAGCTTTAATTCACTTC 59.885 37.037 0.00 0.00 0.00 3.01
2751 3588 7.330700 GCATAATTGGCAAAACACTAGCTTTAA 59.669 33.333 3.01 0.00 0.00 1.52
2753 3590 5.639082 GCATAATTGGCAAAACACTAGCTTT 59.361 36.000 3.01 0.00 0.00 3.51
2755 3592 4.747810 GCATAATTGGCAAAACACTAGCT 58.252 39.130 3.01 0.00 0.00 3.32
2774 3611 3.077359 CTGGAAGAAGTTTTCTCGGCAT 58.923 45.455 0.00 0.00 39.61 4.40
2776 3613 1.807142 CCTGGAAGAAGTTTTCTCGGC 59.193 52.381 0.00 0.00 39.61 5.54
2778 3615 3.728845 TGACCTGGAAGAAGTTTTCTCG 58.271 45.455 0.00 0.00 39.61 4.04
2794 3631 6.879276 CATCAAATGCTGAATAGATGACCT 57.121 37.500 5.47 0.00 37.67 3.85
2826 3664 6.013466 ACCAAAAGGGCAAACATTATTCAGAT 60.013 34.615 0.00 0.00 42.05 2.90
2827 3665 5.306678 ACCAAAAGGGCAAACATTATTCAGA 59.693 36.000 0.00 0.00 42.05 3.27
2828 3666 5.550290 ACCAAAAGGGCAAACATTATTCAG 58.450 37.500 0.00 0.00 42.05 3.02
2829 3667 5.559148 ACCAAAAGGGCAAACATTATTCA 57.441 34.783 0.00 0.00 42.05 2.57
2830 3668 6.875948 AAACCAAAAGGGCAAACATTATTC 57.124 33.333 0.00 0.00 42.05 1.75
2831 3669 6.830838 TCAAAACCAAAAGGGCAAACATTATT 59.169 30.769 0.00 0.00 42.05 1.40
2832 3670 6.262049 GTCAAAACCAAAAGGGCAAACATTAT 59.738 34.615 0.00 0.00 42.05 1.28
2856 3694 4.924305 TCAGTAACAACGTTACTCCTGT 57.076 40.909 14.93 0.00 33.30 4.00
2922 3760 8.822805 TGATAGAGGTTAATGAAGTGGTACTTT 58.177 33.333 0.00 0.00 38.80 2.66
2934 3772 8.206867 TCACTTGGATTCTGATAGAGGTTAATG 58.793 37.037 0.00 0.00 0.00 1.90
2946 3784 2.972021 TGAGGTGTCACTTGGATTCTGA 59.028 45.455 2.35 0.00 0.00 3.27
2948 3786 3.307975 CCATGAGGTGTCACTTGGATTCT 60.308 47.826 2.35 0.00 34.75 2.40
2950 3788 2.644299 TCCATGAGGTGTCACTTGGATT 59.356 45.455 2.35 0.00 34.58 3.01
2957 3795 2.625737 CATCTGTCCATGAGGTGTCAC 58.374 52.381 0.00 0.00 34.75 3.67
2976 3825 1.224436 TCATCCCTCAATCATGCCCA 58.776 50.000 0.00 0.00 0.00 5.36
2977 3826 2.444421 GATCATCCCTCAATCATGCCC 58.556 52.381 0.00 0.00 0.00 5.36
2989 3842 4.339814 AGTCTCTTGAGTTACGATCATCCC 59.660 45.833 0.00 0.00 0.00 3.85
3011 3864 1.462283 CACAGAAACGAGCATGTCCAG 59.538 52.381 0.00 0.00 0.00 3.86
3023 3876 6.825721 AGGGATCAAATAGATGTCACAGAAAC 59.174 38.462 0.00 0.00 37.00 2.78
3029 3882 6.825721 AGAAACAGGGATCAAATAGATGTCAC 59.174 38.462 0.00 0.00 37.00 3.67
3038 3892 4.901250 ACACCAAAGAAACAGGGATCAAAT 59.099 37.500 0.00 0.00 0.00 2.32
3045 3899 3.436700 GTGAACACCAAAGAAACAGGG 57.563 47.619 0.00 0.00 0.00 4.45
3081 3935 3.064931 GGTACAAGCTACAACAGACCAC 58.935 50.000 0.00 0.00 0.00 4.16
3084 3938 4.218852 AGAGAGGTACAAGCTACAACAGAC 59.781 45.833 0.00 0.00 0.00 3.51
3096 3950 5.105473 CCGATTGTCCTAAAGAGAGGTACAA 60.105 44.000 0.00 8.76 39.14 2.41
3106 3965 9.360093 GTAGAATGATATCCGATTGTCCTAAAG 57.640 37.037 0.00 0.00 0.00 1.85
3131 3990 2.300437 GGTTCTCCTTGCAGAGTACTGT 59.700 50.000 0.00 0.00 45.04 3.55
3132 3991 2.564947 AGGTTCTCCTTGCAGAGTACTG 59.435 50.000 0.00 0.00 42.12 2.74
3133 3992 2.896039 AGGTTCTCCTTGCAGAGTACT 58.104 47.619 10.98 0.00 42.12 2.73
3134 3993 4.017808 TCTAGGTTCTCCTTGCAGAGTAC 58.982 47.826 3.17 3.98 42.12 2.73
3160 4019 9.326413 CCCACTACTAACCAAATGATAAAGTAG 57.674 37.037 0.00 0.00 40.34 2.57
3162 4021 7.610305 CACCCACTACTAACCAAATGATAAAGT 59.390 37.037 0.00 0.00 0.00 2.66
3163 4022 7.067008 CCACCCACTACTAACCAAATGATAAAG 59.933 40.741 0.00 0.00 0.00 1.85
3184 4043 3.165875 TCTCTCGATAATCCATCCACCC 58.834 50.000 0.00 0.00 0.00 4.61
3185 4044 4.873746 TTCTCTCGATAATCCATCCACC 57.126 45.455 0.00 0.00 0.00 4.61
3188 4047 7.607250 AGTTACATTCTCTCGATAATCCATCC 58.393 38.462 0.00 0.00 0.00 3.51
3231 4090 7.984050 GGGATGAATCATACGAATCATACATCT 59.016 37.037 1.73 0.00 42.24 2.90
3232 4091 7.984050 AGGGATGAATCATACGAATCATACATC 59.016 37.037 1.73 0.00 42.24 3.06
3233 4092 7.767659 CAGGGATGAATCATACGAATCATACAT 59.232 37.037 1.73 0.00 42.24 2.29
3234 4093 7.099120 CAGGGATGAATCATACGAATCATACA 58.901 38.462 1.73 0.00 42.24 2.29
3235 4094 6.036517 GCAGGGATGAATCATACGAATCATAC 59.963 42.308 0.00 0.00 41.02 2.39
3236 4095 6.070596 AGCAGGGATGAATCATACGAATCATA 60.071 38.462 0.00 0.00 41.02 2.15
3237 4096 4.940046 GCAGGGATGAATCATACGAATCAT 59.060 41.667 0.00 0.00 43.14 2.45
3238 4097 4.040829 AGCAGGGATGAATCATACGAATCA 59.959 41.667 0.00 0.00 35.55 2.57
3239 4098 4.391216 CAGCAGGGATGAATCATACGAATC 59.609 45.833 0.00 0.00 0.00 2.52
3240 4099 4.040829 TCAGCAGGGATGAATCATACGAAT 59.959 41.667 0.00 0.00 0.00 3.34
3241 4100 3.387699 TCAGCAGGGATGAATCATACGAA 59.612 43.478 0.00 0.00 0.00 3.85
3242 4101 2.965147 TCAGCAGGGATGAATCATACGA 59.035 45.455 0.00 0.00 0.00 3.43
3243 4102 3.391506 TCAGCAGGGATGAATCATACG 57.608 47.619 0.00 0.00 0.00 3.06
3269 4128 6.013466 AGACCTGACCGTTATAAGGGTTTAAA 60.013 38.462 26.26 14.03 46.35 1.52
3271 4130 5.025453 AGACCTGACCGTTATAAGGGTTTA 58.975 41.667 26.26 18.39 46.35 2.01
3280 4139 5.128827 ACAATGTATCAGACCTGACCGTTAT 59.871 40.000 1.31 0.00 43.11 1.89
3281 4140 4.464951 ACAATGTATCAGACCTGACCGTTA 59.535 41.667 1.31 0.00 43.11 3.18
3284 4143 3.190079 CACAATGTATCAGACCTGACCG 58.810 50.000 1.31 0.00 43.11 4.79
3322 4181 9.487790 GAATAATGTGTTTTCAAAGATTTGGGA 57.512 29.630 5.52 0.00 38.66 4.37
3334 4193 8.155923 GCAATGTTCTTCGAATAATGTGTTTTC 58.844 33.333 0.00 0.00 0.00 2.29
3338 4197 6.500684 AGCAATGTTCTTCGAATAATGTGT 57.499 33.333 0.00 0.00 0.00 3.72
3339 4198 7.909267 TCTAGCAATGTTCTTCGAATAATGTG 58.091 34.615 0.00 0.00 0.00 3.21
3340 4199 8.554528 CATCTAGCAATGTTCTTCGAATAATGT 58.445 33.333 0.00 0.00 0.00 2.71
3341 4200 8.013947 CCATCTAGCAATGTTCTTCGAATAATG 58.986 37.037 0.00 0.00 0.00 1.90
3342 4201 7.933577 TCCATCTAGCAATGTTCTTCGAATAAT 59.066 33.333 0.00 0.00 0.00 1.28
3343 4202 7.224753 GTCCATCTAGCAATGTTCTTCGAATAA 59.775 37.037 0.00 0.00 0.00 1.40
3344 4203 6.701841 GTCCATCTAGCAATGTTCTTCGAATA 59.298 38.462 0.00 0.00 0.00 1.75
3345 4204 5.525378 GTCCATCTAGCAATGTTCTTCGAAT 59.475 40.000 0.00 0.00 0.00 3.34
3346 4205 4.870426 GTCCATCTAGCAATGTTCTTCGAA 59.130 41.667 0.00 0.00 0.00 3.71
3347 4206 4.433615 GTCCATCTAGCAATGTTCTTCGA 58.566 43.478 0.00 0.00 0.00 3.71
3348 4207 3.243877 CGTCCATCTAGCAATGTTCTTCG 59.756 47.826 0.00 0.00 0.00 3.79
3349 4208 4.268884 GTCGTCCATCTAGCAATGTTCTTC 59.731 45.833 0.00 0.00 0.00 2.87
3350 4209 4.184629 GTCGTCCATCTAGCAATGTTCTT 58.815 43.478 0.00 0.00 0.00 2.52
3351 4210 3.195610 TGTCGTCCATCTAGCAATGTTCT 59.804 43.478 0.00 0.00 0.00 3.01
3352 4211 3.521560 TGTCGTCCATCTAGCAATGTTC 58.478 45.455 0.00 0.00 0.00 3.18
3353 4212 3.055819 ACTGTCGTCCATCTAGCAATGTT 60.056 43.478 0.00 0.00 0.00 2.71
3354 4213 2.497675 ACTGTCGTCCATCTAGCAATGT 59.502 45.455 0.00 0.00 0.00 2.71
3355 4214 3.170791 ACTGTCGTCCATCTAGCAATG 57.829 47.619 0.00 0.00 0.00 2.82
3356 4215 3.430929 GGAACTGTCGTCCATCTAGCAAT 60.431 47.826 0.00 0.00 0.00 3.56
3357 4216 2.094182 GGAACTGTCGTCCATCTAGCAA 60.094 50.000 0.00 0.00 0.00 3.91
3358 4217 1.476891 GGAACTGTCGTCCATCTAGCA 59.523 52.381 0.00 0.00 0.00 3.49
3359 4218 1.534175 CGGAACTGTCGTCCATCTAGC 60.534 57.143 0.00 0.00 0.00 3.42
3360 4219 1.065701 CCGGAACTGTCGTCCATCTAG 59.934 57.143 0.00 0.00 0.00 2.43
3361 4220 1.100510 CCGGAACTGTCGTCCATCTA 58.899 55.000 0.00 0.00 0.00 1.98
3362 4221 0.611062 TCCGGAACTGTCGTCCATCT 60.611 55.000 0.00 0.00 0.00 2.90
3363 4222 0.458025 GTCCGGAACTGTCGTCCATC 60.458 60.000 5.23 0.00 0.00 3.51
3364 4223 1.590147 GTCCGGAACTGTCGTCCAT 59.410 57.895 5.23 0.00 0.00 3.41
3365 4224 2.911484 CGTCCGGAACTGTCGTCCA 61.911 63.158 5.23 0.00 0.00 4.02
3366 4225 2.126580 CGTCCGGAACTGTCGTCC 60.127 66.667 5.23 0.00 0.00 4.79
3367 4226 1.441682 GTCGTCCGGAACTGTCGTC 60.442 63.158 5.23 0.00 0.00 4.20
3368 4227 2.188829 TGTCGTCCGGAACTGTCGT 61.189 57.895 5.23 0.00 0.00 4.34
3369 4228 1.728426 GTGTCGTCCGGAACTGTCG 60.728 63.158 5.23 5.16 0.00 4.35
3370 4229 1.728426 CGTGTCGTCCGGAACTGTC 60.728 63.158 5.23 0.00 0.00 3.51
3371 4230 2.333938 CGTGTCGTCCGGAACTGT 59.666 61.111 5.23 0.00 0.00 3.55
3372 4231 2.191354 TAGCGTGTCGTCCGGAACTG 62.191 60.000 5.23 0.00 0.00 3.16
3373 4232 1.310933 ATAGCGTGTCGTCCGGAACT 61.311 55.000 5.23 0.00 0.00 3.01
3374 4233 0.378257 TATAGCGTGTCGTCCGGAAC 59.622 55.000 5.23 1.46 0.00 3.62
3375 4234 1.265095 GATATAGCGTGTCGTCCGGAA 59.735 52.381 5.23 0.00 0.00 4.30
3376 4235 0.870393 GATATAGCGTGTCGTCCGGA 59.130 55.000 0.00 0.00 0.00 5.14
3377 4236 0.873054 AGATATAGCGTGTCGTCCGG 59.127 55.000 0.00 0.00 0.00 5.14
3378 4237 3.059393 TGTTAGATATAGCGTGTCGTCCG 60.059 47.826 0.00 0.00 0.00 4.79
3379 4238 4.478843 TGTTAGATATAGCGTGTCGTCC 57.521 45.455 0.00 0.00 0.00 4.79
3380 4239 5.568296 GGATTGTTAGATATAGCGTGTCGTC 59.432 44.000 0.00 0.00 0.00 4.20
3381 4240 5.458891 GGATTGTTAGATATAGCGTGTCGT 58.541 41.667 0.00 0.00 0.00 4.34
3382 4241 4.553815 CGGATTGTTAGATATAGCGTGTCG 59.446 45.833 0.00 0.00 0.00 4.35
3383 4242 5.342525 CACGGATTGTTAGATATAGCGTGTC 59.657 44.000 0.00 0.00 0.00 3.67
3384 4243 5.220381 CACGGATTGTTAGATATAGCGTGT 58.780 41.667 0.00 0.00 0.00 4.49
3385 4244 4.621460 CCACGGATTGTTAGATATAGCGTG 59.379 45.833 0.00 0.00 0.00 5.34
3386 4245 4.321750 CCCACGGATTGTTAGATATAGCGT 60.322 45.833 0.00 0.00 0.00 5.07
3387 4246 4.174009 CCCACGGATTGTTAGATATAGCG 58.826 47.826 0.00 0.00 0.00 4.26
3388 4247 3.933332 GCCCACGGATTGTTAGATATAGC 59.067 47.826 0.00 0.00 0.00 2.97
3389 4248 5.147330 TGCCCACGGATTGTTAGATATAG 57.853 43.478 0.00 0.00 0.00 1.31
3390 4249 5.071250 ACTTGCCCACGGATTGTTAGATATA 59.929 40.000 0.00 0.00 0.00 0.86
3391 4250 4.141482 ACTTGCCCACGGATTGTTAGATAT 60.141 41.667 0.00 0.00 0.00 1.63
3392 4251 3.199071 ACTTGCCCACGGATTGTTAGATA 59.801 43.478 0.00 0.00 0.00 1.98
3393 4252 2.026262 ACTTGCCCACGGATTGTTAGAT 60.026 45.455 0.00 0.00 0.00 1.98
3394 4253 1.349688 ACTTGCCCACGGATTGTTAGA 59.650 47.619 0.00 0.00 0.00 2.10
3395 4254 1.737793 GACTTGCCCACGGATTGTTAG 59.262 52.381 0.00 0.00 0.00 2.34
3396 4255 1.349688 AGACTTGCCCACGGATTGTTA 59.650 47.619 0.00 0.00 0.00 2.41
3397 4256 0.110486 AGACTTGCCCACGGATTGTT 59.890 50.000 0.00 0.00 0.00 2.83
3398 4257 0.981183 TAGACTTGCCCACGGATTGT 59.019 50.000 0.00 0.00 0.00 2.71
3399 4258 1.338674 TGTAGACTTGCCCACGGATTG 60.339 52.381 0.00 0.00 0.00 2.67
3400 4259 0.981183 TGTAGACTTGCCCACGGATT 59.019 50.000 0.00 0.00 0.00 3.01
3401 4260 0.249398 GTGTAGACTTGCCCACGGAT 59.751 55.000 0.00 0.00 0.00 4.18
3402 4261 1.669440 GTGTAGACTTGCCCACGGA 59.331 57.895 0.00 0.00 0.00 4.69
3403 4262 1.375523 GGTGTAGACTTGCCCACGG 60.376 63.158 0.00 0.00 0.00 4.94
3404 4263 1.736645 CGGTGTAGACTTGCCCACG 60.737 63.158 0.00 0.00 0.00 4.94
3405 4264 0.604578 TACGGTGTAGACTTGCCCAC 59.395 55.000 0.00 0.00 0.00 4.61
3406 4265 0.892755 CTACGGTGTAGACTTGCCCA 59.107 55.000 0.00 0.00 0.00 5.36
3407 4266 0.459759 GCTACGGTGTAGACTTGCCC 60.460 60.000 8.11 0.00 0.00 5.36
3408 4267 0.245539 TGCTACGGTGTAGACTTGCC 59.754 55.000 8.11 0.00 0.00 4.52
3409 4268 2.295253 ATGCTACGGTGTAGACTTGC 57.705 50.000 8.11 0.00 0.00 4.01
3422 4281 2.544267 GGCTGATCAAACCGTATGCTAC 59.456 50.000 0.00 0.00 0.00 3.58
3423 4282 2.801699 CGGCTGATCAAACCGTATGCTA 60.802 50.000 22.65 0.00 42.01 3.49
3424 4283 1.668419 GGCTGATCAAACCGTATGCT 58.332 50.000 0.00 0.00 0.00 3.79
3425 4284 0.304705 CGGCTGATCAAACCGTATGC 59.695 55.000 22.65 9.21 42.01 3.14
3431 4290 0.321653 ACCTGACGGCTGATCAAACC 60.322 55.000 0.00 0.12 0.00 3.27
3432 4291 0.798776 CACCTGACGGCTGATCAAAC 59.201 55.000 0.00 0.00 0.00 2.93
3433 4292 0.684535 TCACCTGACGGCTGATCAAA 59.315 50.000 0.00 0.00 0.00 2.69
3434 4293 0.247460 CTCACCTGACGGCTGATCAA 59.753 55.000 0.00 0.00 0.00 2.57
3435 4294 0.900182 ACTCACCTGACGGCTGATCA 60.900 55.000 0.00 0.00 0.00 2.92
3436 4295 0.459237 CACTCACCTGACGGCTGATC 60.459 60.000 0.00 0.00 0.00 2.92
3437 4296 1.188219 ACACTCACCTGACGGCTGAT 61.188 55.000 0.00 0.00 0.00 2.90
3438 4297 1.806461 GACACTCACCTGACGGCTGA 61.806 60.000 0.00 0.00 0.00 4.26
3439 4298 1.373497 GACACTCACCTGACGGCTG 60.373 63.158 0.00 0.00 0.00 4.85
3440 4299 2.920645 CGACACTCACCTGACGGCT 61.921 63.158 0.00 0.00 0.00 5.52
3441 4300 2.430921 CGACACTCACCTGACGGC 60.431 66.667 0.00 0.00 0.00 5.68
3442 4301 1.081376 GACGACACTCACCTGACGG 60.081 63.158 0.00 0.00 34.26 4.79
3443 4302 1.081376 GGACGACACTCACCTGACG 60.081 63.158 0.00 0.00 35.77 4.35
3444 4303 0.039074 CTGGACGACACTCACCTGAC 60.039 60.000 0.00 0.00 0.00 3.51
3445 4304 1.806461 GCTGGACGACACTCACCTGA 61.806 60.000 0.00 0.00 0.00 3.86
3446 4305 1.373497 GCTGGACGACACTCACCTG 60.373 63.158 0.00 0.00 0.00 4.00
3447 4306 2.574955 GGCTGGACGACACTCACCT 61.575 63.158 0.00 0.00 0.00 4.00
3448 4307 2.048127 GGCTGGACGACACTCACC 60.048 66.667 0.00 0.00 0.00 4.02
3449 4308 2.416244 TTCGGCTGGACGACACTCAC 62.416 60.000 0.00 0.00 43.37 3.51
3450 4309 2.197605 TTCGGCTGGACGACACTCA 61.198 57.895 0.00 0.00 43.37 3.41
3451 4310 1.733399 GTTCGGCTGGACGACACTC 60.733 63.158 0.00 0.00 43.37 3.51
3452 4311 1.816863 ATGTTCGGCTGGACGACACT 61.817 55.000 0.00 0.00 43.37 3.55
3453 4312 1.352156 GATGTTCGGCTGGACGACAC 61.352 60.000 0.00 1.58 43.37 3.67
3454 4313 1.080093 GATGTTCGGCTGGACGACA 60.080 57.895 0.00 1.02 43.37 4.35
3455 4314 2.158959 CGATGTTCGGCTGGACGAC 61.159 63.158 0.00 0.00 43.37 4.34
3456 4315 2.180769 CGATGTTCGGCTGGACGA 59.819 61.111 0.00 0.00 41.76 4.20
3457 4316 2.126071 ACGATGTTCGGCTGGACG 60.126 61.111 0.00 0.00 45.59 4.79
3458 4317 3.782042 GACGATGTTCGGCTGGAC 58.218 61.111 0.00 0.00 46.20 4.02
3464 4323 0.246635 ACTTCAGGGACGATGTTCGG 59.753 55.000 1.69 0.00 45.59 4.30
3465 4324 2.163815 AGTACTTCAGGGACGATGTTCG 59.836 50.000 0.00 0.00 46.93 3.95
3466 4325 3.870633 AGTACTTCAGGGACGATGTTC 57.129 47.619 0.00 0.00 0.00 3.18
3467 4326 3.576982 TGAAGTACTTCAGGGACGATGTT 59.423 43.478 30.07 0.00 43.90 2.71
3468 4327 3.162666 TGAAGTACTTCAGGGACGATGT 58.837 45.455 30.07 0.00 43.90 3.06
3469 4328 3.868757 TGAAGTACTTCAGGGACGATG 57.131 47.619 30.07 0.00 43.90 3.84
3470 4329 3.833070 AAGTGAAGTACTTCAGGGACGAT 59.167 43.478 33.36 15.78 46.55 3.73
3471 4330 3.228453 AAGTGAAGTACTTCAGGGACGA 58.772 45.455 33.36 11.47 46.55 4.20
3472 4331 3.662247 AAGTGAAGTACTTCAGGGACG 57.338 47.619 33.36 0.00 46.55 4.79
3473 4332 5.805994 CGAATAAGTGAAGTACTTCAGGGAC 59.194 44.000 33.36 22.77 46.55 4.46
3474 4333 5.713389 TCGAATAAGTGAAGTACTTCAGGGA 59.287 40.000 33.36 22.29 46.55 4.20
3475 4334 5.962433 TCGAATAAGTGAAGTACTTCAGGG 58.038 41.667 33.36 18.55 46.55 4.45
3476 4335 7.759886 TCATTCGAATAAGTGAAGTACTTCAGG 59.240 37.037 33.36 17.98 46.55 3.86
3477 4336 8.587950 GTCATTCGAATAAGTGAAGTACTTCAG 58.412 37.037 33.36 21.31 46.55 3.02
3478 4337 8.085909 TGTCATTCGAATAAGTGAAGTACTTCA 58.914 33.333 30.07 30.07 46.55 3.02
3479 4338 8.373992 GTGTCATTCGAATAAGTGAAGTACTTC 58.626 37.037 25.73 25.73 46.55 3.01
3481 4340 7.375834 TGTGTCATTCGAATAAGTGAAGTACT 58.624 34.615 10.97 0.00 42.89 2.73
3482 4341 7.576750 TGTGTCATTCGAATAAGTGAAGTAC 57.423 36.000 10.97 6.59 0.00 2.73
3483 4342 9.863845 TTATGTGTCATTCGAATAAGTGAAGTA 57.136 29.630 10.97 0.00 0.00 2.24
3484 4343 8.771920 TTATGTGTCATTCGAATAAGTGAAGT 57.228 30.769 10.97 0.00 0.00 3.01
3489 4348 8.765219 GCACTATTATGTGTCATTCGAATAAGT 58.235 33.333 10.97 0.00 39.89 2.24
3490 4349 8.982685 AGCACTATTATGTGTCATTCGAATAAG 58.017 33.333 10.97 0.00 39.89 1.73
3494 4353 5.753438 GGAGCACTATTATGTGTCATTCGAA 59.247 40.000 0.00 0.00 39.89 3.71
3497 4356 6.283694 TCTGGAGCACTATTATGTGTCATTC 58.716 40.000 0.00 0.00 39.89 2.67
3514 4373 6.652900 GGATCTAGATGGTAAATTTCTGGAGC 59.347 42.308 10.74 0.00 34.03 4.70
3515 4374 7.877097 CAGGATCTAGATGGTAAATTTCTGGAG 59.123 40.741 10.74 0.00 31.67 3.86
3516 4375 7.690301 GCAGGATCTAGATGGTAAATTTCTGGA 60.690 40.741 10.74 0.00 32.53 3.86
3538 4397 6.072452 TCGTAGTCATAGATATGTTCTGCAGG 60.072 42.308 15.13 0.00 35.79 4.85
3539 4398 6.903419 TCGTAGTCATAGATATGTTCTGCAG 58.097 40.000 7.63 7.63 35.79 4.41
3540 4399 6.877611 TCGTAGTCATAGATATGTTCTGCA 57.122 37.500 0.03 0.00 35.79 4.41
3549 4408 9.817809 ATTTTTGCTTCTTCGTAGTCATAGATA 57.182 29.630 0.00 0.00 0.00 1.98
3565 4424 4.631813 TCCTTCGCTCTAGATTTTTGCTTC 59.368 41.667 0.00 0.00 0.00 3.86
3575 4434 1.202498 TCGTCGATCCTTCGCTCTAGA 60.202 52.381 0.00 0.00 45.10 2.43
3612 4471 2.049063 GAGCTCACAGGCGTCGTT 60.049 61.111 9.40 0.00 37.29 3.85
3621 4480 1.942776 TGATCAAGGAGGAGCTCACA 58.057 50.000 17.19 0.00 31.08 3.58
3660 4519 1.174783 ACTACGTGGACTTCATCGCT 58.825 50.000 5.70 0.00 0.00 4.93
3665 4524 2.035449 CCAGTCAACTACGTGGACTTCA 59.965 50.000 5.70 0.00 43.53 3.02
3693 4552 1.373748 TAGTTGTTCGGCGGTCTGC 60.374 57.895 7.21 0.00 45.38 4.26
3697 4556 2.048877 CGGTAGTTGTTCGGCGGT 60.049 61.111 7.21 0.00 0.00 5.68
3714 4573 3.485216 CGACAGCCATCGTTGGTATTTTC 60.485 47.826 13.90 3.75 45.57 2.29
3718 4577 0.810031 GCGACAGCCATCGTTGGTAT 60.810 55.000 13.90 0.84 45.57 2.73
3719 4578 1.447140 GCGACAGCCATCGTTGGTA 60.447 57.895 13.90 0.00 45.57 3.25
3720 4579 2.742372 GCGACAGCCATCGTTGGT 60.742 61.111 13.90 0.00 45.57 3.67
3860 4722 3.865929 CTGACGTTCAGCACCGCCT 62.866 63.158 0.00 0.00 37.72 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.