Multiple sequence alignment - TraesCS3B01G519800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G519800 chr3B 100.000 4124 0 0 1 4124 763225871 763229994 0.000000e+00 7616.0
1 TraesCS3B01G519800 chr3A 96.195 2129 76 4 969 3094 709070620 709068494 0.000000e+00 3478.0
2 TraesCS3B01G519800 chr3A 91.160 871 46 6 3188 4047 709068430 709067580 0.000000e+00 1153.0
3 TraesCS3B01G519800 chr3A 81.731 520 29 20 509 968 709071167 709070654 1.400000e-99 374.0
4 TraesCS3B01G519800 chr3A 89.655 261 11 5 1 249 709071515 709071259 6.650000e-83 318.0
5 TraesCS3B01G519800 chr3D 96.101 2129 78 3 969 3094 573921327 573919201 0.000000e+00 3467.0
6 TraesCS3B01G519800 chr3D 95.098 408 16 2 3188 3594 573919157 573918753 1.250000e-179 640.0
7 TraesCS3B01G519800 chr3D 91.202 341 20 3 3674 4006 573912230 573911892 4.860000e-124 455.0
8 TraesCS3B01G519800 chr3D 90.840 262 8 5 1 249 573922151 573921893 1.840000e-88 337.0
9 TraesCS3B01G519800 chr3D 83.401 247 41 0 1293 1539 514680942 514680696 3.210000e-56 230.0
10 TraesCS3B01G519800 chr3D 81.481 297 21 17 697 968 573921648 573921361 3.230000e-51 213.0
11 TraesCS3B01G519800 chr3D 91.241 137 11 1 509 645 573921783 573921648 7.040000e-43 185.0
12 TraesCS3B01G519800 chr6D 77.778 603 93 19 3418 4005 12193989 12194565 2.380000e-87 333.0
13 TraesCS3B01G519800 chr6D 78.059 474 83 7 1087 1539 426109778 426109305 3.140000e-71 279.0
14 TraesCS3B01G519800 chr6D 96.629 89 3 0 4036 4124 351826023 351826111 9.240000e-32 148.0
15 TraesCS3B01G519800 chr6D 91.549 71 5 1 3250 3319 12193737 12193807 3.390000e-16 97.1
16 TraesCS3B01G519800 chr2B 79.098 488 82 11 1075 1543 785984549 785984063 6.650000e-83 318.0
17 TraesCS3B01G519800 chr2B 97.701 87 1 1 4039 4124 798729470 798729556 9.240000e-32 148.0
18 TraesCS3B01G519800 chr1D 85.932 263 37 0 1288 1550 7372271 7372533 8.730000e-72 281.0
19 TraesCS3B01G519800 chr1A 85.496 262 38 0 1289 1550 9532815 9532554 1.460000e-69 274.0
20 TraesCS3B01G519800 chr6B 77.386 482 88 7 1079 1539 641405048 641404567 2.440000e-67 267.0
21 TraesCS3B01G519800 chr7B 80.565 283 55 0 1288 1570 745446456 745446738 6.940000e-53 219.0
22 TraesCS3B01G519800 chr7D 98.795 83 1 0 4042 4124 276449832 276449750 9.240000e-32 148.0
23 TraesCS3B01G519800 chr7A 96.629 89 3 0 4036 4124 215518121 215518209 9.240000e-32 148.0
24 TraesCS3B01G519800 chr5D 96.629 89 3 0 4036 4124 457830429 457830517 9.240000e-32 148.0
25 TraesCS3B01G519800 chr5B 97.647 85 2 0 4040 4124 557797624 557797540 3.320000e-31 147.0
26 TraesCS3B01G519800 chr4A 96.591 88 3 0 4037 4124 411398408 411398495 3.320000e-31 147.0
27 TraesCS3B01G519800 chrUn 95.506 89 4 0 4036 4124 101478595 101478683 4.300000e-30 143.0
28 TraesCS3B01G519800 chr4D 96.512 86 3 0 4039 4124 17340178 17340093 4.300000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G519800 chr3B 763225871 763229994 4123 False 7616.00 7616 100.00000 1 4124 1 chr3B.!!$F1 4123
1 TraesCS3B01G519800 chr3A 709067580 709071515 3935 True 1330.75 3478 89.68525 1 4047 4 chr3A.!!$R1 4046
2 TraesCS3B01G519800 chr3D 573918753 573922151 3398 True 968.40 3467 90.95220 1 3594 5 chr3D.!!$R3 3593
3 TraesCS3B01G519800 chr6D 12193737 12194565 828 False 215.05 333 84.66350 3250 4005 2 chr6D.!!$F2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 453 0.105039 CAGGGAATGCGAGTACTCCC 59.895 60.000 17.23 12.02 46.94 4.30 F
370 455 0.389757 GGGAATGCGAGTACTCCCTC 59.610 60.000 17.23 8.18 43.74 4.30 F
372 457 1.112113 GAATGCGAGTACTCCCTCCA 58.888 55.000 17.23 9.50 0.00 3.86 F
1233 1410 1.153449 TTATCTGGGCGCGGACTTG 60.153 57.895 15.38 0.00 0.00 3.16 F
2577 2754 0.804364 TGCTGTTGCCGCTTAATGAG 59.196 50.000 0.00 0.00 38.71 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2322 0.388520 TGGTCATTGCTCGTCGACTG 60.389 55.000 14.7 7.51 0.00 3.51 R
2298 2475 3.123453 TGTTGATTTCAGCATCGAAGTCG 59.877 43.478 0.0 0.00 35.12 4.18 R
2373 2550 4.912586 TCCCACCAAAATCTTCACGAATA 58.087 39.130 0.0 0.00 0.00 1.75 R
2628 2805 0.179065 CCGAATCCTGCTGCTCATCA 60.179 55.000 0.0 0.00 0.00 3.07 R
4088 4411 0.397941 ATGGGCCGTAGATGACATGG 59.602 55.000 0.0 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 153 1.656652 CTCGCCCGACTCATCATTTT 58.343 50.000 0.00 0.00 0.00 1.82
176 191 2.175878 TCCACTCTGCTTCTGCTTTC 57.824 50.000 0.00 0.00 40.48 2.62
196 211 1.404315 CGGTCAGAGGAGCAAGTTACC 60.404 57.143 0.00 0.00 41.62 2.85
252 300 2.189342 GTCAAGAAATCTCGGCTCTCG 58.811 52.381 0.00 0.00 40.90 4.04
259 307 1.388065 ATCTCGGCTCTCGTTCCTGG 61.388 60.000 0.00 0.00 40.32 4.45
265 313 2.602267 TCTCGTTCCTGGCCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
274 359 1.674057 CTGGCCCGAAGACTCTTGT 59.326 57.895 0.00 0.00 0.00 3.16
281 366 2.548920 CCCGAAGACTCTTGTTCTTGCT 60.549 50.000 0.00 0.00 0.00 3.91
302 387 2.184385 CAAGAAATGCATCGCAGGAC 57.816 50.000 0.00 0.00 43.65 3.85
303 388 1.469703 CAAGAAATGCATCGCAGGACA 59.530 47.619 0.00 0.00 43.65 4.02
304 389 1.376543 AGAAATGCATCGCAGGACAG 58.623 50.000 0.00 0.00 43.65 3.51
305 390 0.248377 GAAATGCATCGCAGGACAGC 60.248 55.000 0.00 0.00 43.65 4.40
306 391 1.660560 AAATGCATCGCAGGACAGCC 61.661 55.000 0.00 0.00 43.65 4.85
316 401 2.044452 AGGACAGCCTGCTTTTTGC 58.956 52.632 0.00 0.00 44.90 3.68
317 402 0.468771 AGGACAGCCTGCTTTTTGCT 60.469 50.000 0.00 0.00 44.90 3.91
318 403 0.390492 GGACAGCCTGCTTTTTGCTT 59.610 50.000 0.00 0.00 43.37 3.91
319 404 1.494824 GACAGCCTGCTTTTTGCTTG 58.505 50.000 0.00 0.00 43.37 4.01
320 405 0.826062 ACAGCCTGCTTTTTGCTTGT 59.174 45.000 0.00 0.00 43.37 3.16
321 406 1.207811 ACAGCCTGCTTTTTGCTTGTT 59.792 42.857 0.00 0.00 43.37 2.83
322 407 2.282407 CAGCCTGCTTTTTGCTTGTTT 58.718 42.857 0.00 0.00 43.37 2.83
323 408 3.118811 ACAGCCTGCTTTTTGCTTGTTTA 60.119 39.130 0.00 0.00 43.37 2.01
324 409 4.060205 CAGCCTGCTTTTTGCTTGTTTAT 58.940 39.130 0.00 0.00 43.37 1.40
325 410 4.512571 CAGCCTGCTTTTTGCTTGTTTATT 59.487 37.500 0.00 0.00 43.37 1.40
326 411 5.695816 CAGCCTGCTTTTTGCTTGTTTATTA 59.304 36.000 0.00 0.00 43.37 0.98
327 412 5.696270 AGCCTGCTTTTTGCTTGTTTATTAC 59.304 36.000 0.00 0.00 43.37 1.89
328 413 5.696270 GCCTGCTTTTTGCTTGTTTATTACT 59.304 36.000 0.00 0.00 43.37 2.24
329 414 6.202762 GCCTGCTTTTTGCTTGTTTATTACTT 59.797 34.615 0.00 0.00 43.37 2.24
330 415 7.566709 CCTGCTTTTTGCTTGTTTATTACTTG 58.433 34.615 0.00 0.00 43.37 3.16
331 416 6.942891 TGCTTTTTGCTTGTTTATTACTTGC 58.057 32.000 0.00 0.00 43.37 4.01
332 417 6.018343 TGCTTTTTGCTTGTTTATTACTTGCC 60.018 34.615 0.00 0.00 43.37 4.52
333 418 6.565811 GCTTTTTGCTTGTTTATTACTTGCCC 60.566 38.462 0.00 0.00 38.95 5.36
334 419 4.529109 TTGCTTGTTTATTACTTGCCCC 57.471 40.909 0.00 0.00 0.00 5.80
335 420 3.773560 TGCTTGTTTATTACTTGCCCCT 58.226 40.909 0.00 0.00 0.00 4.79
336 421 3.761752 TGCTTGTTTATTACTTGCCCCTC 59.238 43.478 0.00 0.00 0.00 4.30
337 422 3.130516 GCTTGTTTATTACTTGCCCCTCC 59.869 47.826 0.00 0.00 0.00 4.30
338 423 3.375647 TGTTTATTACTTGCCCCTCCC 57.624 47.619 0.00 0.00 0.00 4.30
339 424 2.024751 TGTTTATTACTTGCCCCTCCCC 60.025 50.000 0.00 0.00 0.00 4.81
340 425 2.243994 GTTTATTACTTGCCCCTCCCCT 59.756 50.000 0.00 0.00 0.00 4.79
341 426 1.815757 TATTACTTGCCCCTCCCCTC 58.184 55.000 0.00 0.00 0.00 4.30
342 427 0.994050 ATTACTTGCCCCTCCCCTCC 60.994 60.000 0.00 0.00 0.00 4.30
343 428 2.132946 TTACTTGCCCCTCCCCTCCT 62.133 60.000 0.00 0.00 0.00 3.69
344 429 1.233172 TACTTGCCCCTCCCCTCCTA 61.233 60.000 0.00 0.00 0.00 2.94
345 430 2.042261 TTGCCCCTCCCCTCCTAC 59.958 66.667 0.00 0.00 0.00 3.18
346 431 2.840203 CTTGCCCCTCCCCTCCTACA 62.840 65.000 0.00 0.00 0.00 2.74
347 432 2.042261 GCCCCTCCCCTCCTACAA 59.958 66.667 0.00 0.00 0.00 2.41
348 433 2.073101 GCCCCTCCCCTCCTACAAG 61.073 68.421 0.00 0.00 0.00 3.16
349 434 2.073101 CCCCTCCCCTCCTACAAGC 61.073 68.421 0.00 0.00 0.00 4.01
350 435 1.306997 CCCTCCCCTCCTACAAGCA 60.307 63.158 0.00 0.00 0.00 3.91
351 436 1.341156 CCCTCCCCTCCTACAAGCAG 61.341 65.000 0.00 0.00 0.00 4.24
352 437 1.341156 CCTCCCCTCCTACAAGCAGG 61.341 65.000 0.00 0.00 37.00 4.85
353 438 1.306997 TCCCCTCCTACAAGCAGGG 60.307 63.158 0.00 0.00 46.08 4.45
357 442 2.338577 CCTCCTACAAGCAGGGAATG 57.661 55.000 0.00 0.00 36.26 2.67
366 451 2.979130 GCAGGGAATGCGAGTACTC 58.021 57.895 13.18 13.18 46.99 2.59
367 452 0.530870 GCAGGGAATGCGAGTACTCC 60.531 60.000 17.23 10.38 46.99 3.85
368 453 0.105039 CAGGGAATGCGAGTACTCCC 59.895 60.000 17.23 12.02 46.94 4.30
369 454 2.517609 GGGAATGCGAGTACTCCCT 58.482 57.895 17.23 0.00 43.74 4.20
370 455 0.389757 GGGAATGCGAGTACTCCCTC 59.610 60.000 17.23 8.18 43.74 4.30
371 456 0.389757 GGAATGCGAGTACTCCCTCC 59.610 60.000 17.23 12.98 0.00 4.30
372 457 1.112113 GAATGCGAGTACTCCCTCCA 58.888 55.000 17.23 9.50 0.00 3.86
373 458 1.689273 GAATGCGAGTACTCCCTCCAT 59.311 52.381 17.23 11.21 0.00 3.41
374 459 1.794714 ATGCGAGTACTCCCTCCATT 58.205 50.000 17.23 0.00 0.00 3.16
375 460 1.568504 TGCGAGTACTCCCTCCATTT 58.431 50.000 17.23 0.00 0.00 2.32
376 461 1.480954 TGCGAGTACTCCCTCCATTTC 59.519 52.381 17.23 0.00 0.00 2.17
377 462 1.757699 GCGAGTACTCCCTCCATTTCT 59.242 52.381 17.23 0.00 0.00 2.52
378 463 2.168728 GCGAGTACTCCCTCCATTTCTT 59.831 50.000 17.23 0.00 0.00 2.52
379 464 3.383825 GCGAGTACTCCCTCCATTTCTTA 59.616 47.826 17.23 0.00 0.00 2.10
380 465 4.142004 GCGAGTACTCCCTCCATTTCTTAA 60.142 45.833 17.23 0.00 0.00 1.85
381 466 5.453480 GCGAGTACTCCCTCCATTTCTTAAT 60.453 44.000 17.23 0.00 0.00 1.40
382 467 6.239232 GCGAGTACTCCCTCCATTTCTTAATA 60.239 42.308 17.23 0.00 0.00 0.98
383 468 7.146648 CGAGTACTCCCTCCATTTCTTAATAC 58.853 42.308 17.23 0.00 0.00 1.89
384 469 7.201884 CGAGTACTCCCTCCATTTCTTAATACA 60.202 40.741 17.23 0.00 0.00 2.29
385 470 8.388656 AGTACTCCCTCCATTTCTTAATACAA 57.611 34.615 0.00 0.00 0.00 2.41
386 471 8.487028 AGTACTCCCTCCATTTCTTAATACAAG 58.513 37.037 0.00 0.00 0.00 3.16
387 472 7.272144 ACTCCCTCCATTTCTTAATACAAGT 57.728 36.000 0.00 0.00 0.00 3.16
388 473 7.699878 ACTCCCTCCATTTCTTAATACAAGTT 58.300 34.615 0.00 0.00 0.00 2.66
389 474 8.170730 ACTCCCTCCATTTCTTAATACAAGTTT 58.829 33.333 0.00 0.00 0.00 2.66
390 475 8.950007 TCCCTCCATTTCTTAATACAAGTTTT 57.050 30.769 0.00 0.00 0.00 2.43
391 476 9.374711 TCCCTCCATTTCTTAATACAAGTTTTT 57.625 29.630 0.00 0.00 0.00 1.94
420 505 8.526218 AGAGATTTCAATATGCACTACATACG 57.474 34.615 0.00 0.00 43.99 3.06
421 506 8.144478 AGAGATTTCAATATGCACTACATACGT 58.856 33.333 0.00 0.00 43.99 3.57
422 507 9.406828 GAGATTTCAATATGCACTACATACGTA 57.593 33.333 0.00 0.00 43.99 3.57
423 508 9.929180 AGATTTCAATATGCACTACATACGTAT 57.071 29.630 1.14 1.14 43.99 3.06
425 510 9.929180 ATTTCAATATGCACTACATACGTATCT 57.071 29.630 4.74 0.00 43.99 1.98
434 519 9.028185 TGCACTACATACGTATCTATATAGACG 57.972 37.037 14.71 16.50 34.72 4.18
435 520 9.242477 GCACTACATACGTATCTATATAGACGA 57.758 37.037 23.37 10.43 34.72 4.20
437 522 9.444534 ACTACATACGTATCTATATAGACGACG 57.555 37.037 29.81 29.81 44.30 5.12
438 523 9.657121 CTACATACGTATCTATATAGACGACGA 57.343 37.037 34.14 24.47 42.78 4.20
439 524 8.334016 ACATACGTATCTATATAGACGACGAC 57.666 38.462 34.14 19.60 42.78 4.34
440 525 5.923486 ACGTATCTATATAGACGACGACG 57.077 43.478 34.14 27.15 42.78 5.12
441 526 5.631992 ACGTATCTATATAGACGACGACGA 58.368 41.667 34.14 9.51 42.78 4.20
442 527 6.261859 ACGTATCTATATAGACGACGACGAT 58.738 40.000 34.14 20.44 42.78 3.73
443 528 7.410485 ACGTATCTATATAGACGACGACGATA 58.590 38.462 34.14 14.32 42.78 2.92
444 529 7.374754 ACGTATCTATATAGACGACGACGATAC 59.625 40.741 34.14 20.93 42.78 2.24
445 530 7.374491 CGTATCTATATAGACGACGACGATACA 59.626 40.741 28.77 0.00 42.78 2.29
446 531 9.179552 GTATCTATATAGACGACGACGATACAT 57.820 37.037 14.71 4.06 43.06 2.29
447 532 7.447243 TCTATATAGACGACGACGATACATG 57.553 40.000 15.32 0.00 42.66 3.21
448 533 7.253422 TCTATATAGACGACGACGATACATGA 58.747 38.462 15.32 0.00 42.66 3.07
449 534 6.716898 ATATAGACGACGACGATACATGAA 57.283 37.500 15.32 0.00 42.66 2.57
450 535 3.752412 AGACGACGACGATACATGAAA 57.248 42.857 15.32 0.00 42.66 2.69
451 536 4.288670 AGACGACGACGATACATGAAAT 57.711 40.909 15.32 0.00 42.66 2.17
452 537 4.669318 AGACGACGACGATACATGAAATT 58.331 39.130 15.32 0.00 42.66 1.82
453 538 5.813717 AGACGACGACGATACATGAAATTA 58.186 37.500 15.32 0.00 42.66 1.40
454 539 6.436261 AGACGACGACGATACATGAAATTAT 58.564 36.000 15.32 0.00 42.66 1.28
455 540 6.916387 AGACGACGACGATACATGAAATTATT 59.084 34.615 15.32 0.00 42.66 1.40
456 541 8.071967 AGACGACGACGATACATGAAATTATTA 58.928 33.333 15.32 0.00 42.66 0.98
457 542 8.212372 ACGACGACGATACATGAAATTATTAG 57.788 34.615 15.32 0.00 42.66 1.73
458 543 7.859377 ACGACGACGATACATGAAATTATTAGT 59.141 33.333 15.32 0.00 42.66 2.24
459 544 9.321590 CGACGACGATACATGAAATTATTAGTA 57.678 33.333 0.00 0.00 42.66 1.82
487 572 3.374220 CACACATGTGTCAATTTGGCT 57.626 42.857 28.38 0.06 42.83 4.75
488 573 3.311106 CACACATGTGTCAATTTGGCTC 58.689 45.455 28.38 0.00 42.83 4.70
489 574 2.957680 ACACATGTGTCAATTTGGCTCA 59.042 40.909 25.76 8.07 40.24 4.26
490 575 3.384146 ACACATGTGTCAATTTGGCTCAA 59.616 39.130 25.76 0.00 40.24 3.02
491 576 4.039488 ACACATGTGTCAATTTGGCTCAAT 59.961 37.500 25.76 0.00 40.24 2.57
492 577 4.992319 CACATGTGTCAATTTGGCTCAATT 59.008 37.500 18.03 0.00 28.95 2.32
493 578 6.157904 CACATGTGTCAATTTGGCTCAATTA 58.842 36.000 18.03 0.00 28.95 1.40
494 579 6.645827 CACATGTGTCAATTTGGCTCAATTAA 59.354 34.615 18.03 0.00 28.95 1.40
495 580 7.332430 CACATGTGTCAATTTGGCTCAATTAAT 59.668 33.333 18.03 0.00 28.95 1.40
496 581 8.530311 ACATGTGTCAATTTGGCTCAATTAATA 58.470 29.630 9.53 0.00 28.95 0.98
497 582 9.027129 CATGTGTCAATTTGGCTCAATTAATAG 57.973 33.333 9.53 0.00 28.95 1.73
498 583 7.546358 TGTGTCAATTTGGCTCAATTAATAGG 58.454 34.615 3.43 0.00 0.00 2.57
499 584 7.395772 TGTGTCAATTTGGCTCAATTAATAGGA 59.604 33.333 3.43 0.00 0.00 2.94
500 585 7.917505 GTGTCAATTTGGCTCAATTAATAGGAG 59.082 37.037 11.03 11.03 0.00 3.69
511 596 8.388484 CTCAATTAATAGGAGCATGCTTAACT 57.612 34.615 23.61 21.22 38.32 2.24
542 627 2.690653 TTTCCAAGTCTGGGCCCACG 62.691 60.000 24.45 17.71 43.71 4.94
551 636 3.810896 GGGCCCACGCGTCATTTC 61.811 66.667 19.95 0.00 35.02 2.17
624 709 1.672356 AGCCTTGCGTGCTCGAATT 60.672 52.632 13.13 0.00 39.71 2.17
639 724 4.460505 CTCGAATTAAACGACCAAACACC 58.539 43.478 0.00 0.00 35.88 4.16
658 743 2.258726 GGAGGTGAAAAACGGCGCT 61.259 57.895 6.90 0.00 0.00 5.92
687 772 1.293924 CCGTGCTCTGCTTCCTTATG 58.706 55.000 0.00 0.00 0.00 1.90
693 778 2.513666 TGCTTCCTTATGGGCGCG 60.514 61.111 0.00 0.00 35.15 6.86
724 834 1.670811 GAGTCCGTGCCCATATTTGTG 59.329 52.381 0.00 0.00 0.00 3.33
786 906 7.417612 TCTTCTTTGAGAAAACTGTGTATTGC 58.582 34.615 0.00 0.00 33.19 3.56
787 907 5.747565 TCTTTGAGAAAACTGTGTATTGCG 58.252 37.500 0.00 0.00 0.00 4.85
788 908 5.525745 TCTTTGAGAAAACTGTGTATTGCGA 59.474 36.000 0.00 0.00 0.00 5.10
795 930 4.481368 AACTGTGTATTGCGAATCCCTA 57.519 40.909 0.00 0.00 0.00 3.53
817 952 7.280652 CCCTAATTTGCATTTCCCTTTTATGTG 59.719 37.037 0.00 0.00 0.00 3.21
818 953 7.823799 CCTAATTTGCATTTCCCTTTTATGTGT 59.176 33.333 0.00 0.00 0.00 3.72
819 954 9.218440 CTAATTTGCATTTCCCTTTTATGTGTT 57.782 29.630 0.00 0.00 0.00 3.32
823 958 7.238486 TGCATTTCCCTTTTATGTGTTGTAT 57.762 32.000 0.00 0.00 0.00 2.29
825 960 8.247562 TGCATTTCCCTTTTATGTGTTGTATAC 58.752 33.333 0.00 0.00 0.00 1.47
863 998 2.844348 ACGGATTTCTACTTCCCCACAT 59.156 45.455 0.00 0.00 0.00 3.21
870 1005 2.571653 TCTACTTCCCCACATTGACTGG 59.428 50.000 0.00 0.00 0.00 4.00
871 1006 1.444933 ACTTCCCCACATTGACTGGA 58.555 50.000 0.00 0.00 0.00 3.86
872 1007 1.780309 ACTTCCCCACATTGACTGGAA 59.220 47.619 0.00 0.00 34.15 3.53
975 1152 3.893326 AGCAGTAGCATATGTGTGTCA 57.107 42.857 4.29 0.00 45.49 3.58
1054 1231 1.530013 AACAGGTACGTGGTCCGAGG 61.530 60.000 19.03 0.00 40.70 4.63
1233 1410 1.153449 TTATCTGGGCGCGGACTTG 60.153 57.895 15.38 0.00 0.00 3.16
1282 1459 1.884464 CGCCATGAGGATGTGACCG 60.884 63.158 0.00 0.00 36.89 4.79
1284 1461 1.524002 CCATGAGGATGTGACCGCT 59.476 57.895 0.00 0.00 36.89 5.52
1452 1629 4.728772 TCTGGAAGTCCATTCACAAACAT 58.271 39.130 0.00 0.00 46.46 2.71
1477 1654 4.440250 GCGTGGAGCTTCTAGTTTCAGATA 60.440 45.833 0.00 0.00 44.04 1.98
1570 1747 1.608717 CCTCGAGGGTTCCACTGGAG 61.609 65.000 24.62 0.00 39.57 3.86
1623 1800 1.971357 GCCGAGGATCCCTATTCTCAA 59.029 52.381 8.55 0.00 37.57 3.02
1632 1809 7.184862 AGGATCCCTATTCTCAAATTGTTTGT 58.815 34.615 8.55 0.00 35.48 2.83
1699 1876 2.034179 CGATCAGGTGATAGCGGTAACA 59.966 50.000 0.00 0.00 34.37 2.41
1711 1888 6.929049 TGATAGCGGTAACATTATCCAAGAAG 59.071 38.462 0.00 0.00 33.07 2.85
1788 1965 7.569639 TGATCTGTATACTAAGTCCTGTGTC 57.430 40.000 4.17 0.00 0.00 3.67
1851 2028 2.024414 GTGTCTGTTCTGGTTGCCTTT 58.976 47.619 0.00 0.00 0.00 3.11
1934 2111 2.282820 CGCTCTTCGTAGGATGCTTTTC 59.717 50.000 0.00 0.00 0.00 2.29
1958 2135 5.399013 GTTGGAAGTATGTGCCATGTTTAC 58.601 41.667 0.00 0.00 0.00 2.01
2082 2259 5.546526 CCAGAGAGGAAGCCATATCTAAAC 58.453 45.833 0.00 0.00 41.22 2.01
2295 2472 2.814336 GGAGTGTGTTGTGAAGGGAATC 59.186 50.000 0.00 0.00 0.00 2.52
2373 2550 4.125703 GCATAGTGCAAGAGCTACAAGAT 58.874 43.478 0.00 0.00 44.26 2.40
2394 2571 5.590259 AGATATTCGTGAAGATTTTGGTGGG 59.410 40.000 0.00 0.00 0.00 4.61
2431 2608 3.428045 GCATTTTATCACAGAGGCACACC 60.428 47.826 0.00 0.00 0.00 4.16
2558 2735 2.684943 CCTTTTGGTTACCCACCCTTT 58.315 47.619 0.00 0.00 46.68 3.11
2571 2748 2.730094 CCTTTGCTGTTGCCGCTT 59.270 55.556 0.00 0.00 38.71 4.68
2577 2754 0.804364 TGCTGTTGCCGCTTAATGAG 59.196 50.000 0.00 0.00 38.71 2.90
2628 2805 5.278957 GGCACACTTGTTTCCACATCTTATT 60.279 40.000 0.00 0.00 31.06 1.40
2646 2823 1.660167 TTGATGAGCAGCAGGATTCG 58.340 50.000 0.00 0.00 0.00 3.34
2697 2874 2.029918 GGAAACACTGCAGGAATTGGTC 60.030 50.000 19.93 8.72 0.00 4.02
2877 3054 2.827322 CAATGCCAATCAAAGAGGGACA 59.173 45.455 0.00 0.00 0.00 4.02
2923 3100 3.054875 TGCACCAAGATAAGAGCATCAGT 60.055 43.478 0.00 0.00 37.82 3.41
2997 3174 6.061441 TGATTTTACTCCTCTTCTGTTTGCA 58.939 36.000 0.00 0.00 0.00 4.08
3014 3191 1.524002 CATCTGGCACATCTCCCGT 59.476 57.895 0.00 0.00 38.20 5.28
3017 3194 2.994995 TGGCACATCTCCCGTCGT 60.995 61.111 0.00 0.00 0.00 4.34
3019 3196 1.065928 GGCACATCTCCCGTCGTAG 59.934 63.158 0.00 0.00 0.00 3.51
3099 3313 1.445871 TGCAGTAATGAGCAGTGCAG 58.554 50.000 19.20 0.00 45.11 4.41
3108 3322 3.138884 TGAGCAGTGCAGAAATACCAA 57.861 42.857 19.20 0.00 0.00 3.67
3109 3323 3.689347 TGAGCAGTGCAGAAATACCAAT 58.311 40.909 19.20 0.00 0.00 3.16
3119 3333 5.007626 TGCAGAAATACCAATCGCTGTATTC 59.992 40.000 0.00 0.00 36.82 1.75
3120 3334 5.670097 CAGAAATACCAATCGCTGTATTCG 58.330 41.667 0.00 0.00 36.82 3.34
3122 3336 5.815740 AGAAATACCAATCGCTGTATTCGTT 59.184 36.000 0.00 0.00 36.82 3.85
3123 3337 6.982141 AGAAATACCAATCGCTGTATTCGTTA 59.018 34.615 0.00 0.00 36.82 3.18
3124 3338 7.493320 AGAAATACCAATCGCTGTATTCGTTAA 59.507 33.333 0.00 0.00 36.82 2.01
3125 3339 7.724305 AATACCAATCGCTGTATTCGTTAAT 57.276 32.000 0.00 0.00 33.51 1.40
3126 3340 8.821147 AATACCAATCGCTGTATTCGTTAATA 57.179 30.769 0.00 0.00 33.51 0.98
3127 3341 8.821147 ATACCAATCGCTGTATTCGTTAATAA 57.179 30.769 0.00 0.00 29.41 1.40
3128 3342 7.542534 ACCAATCGCTGTATTCGTTAATAAA 57.457 32.000 0.00 0.00 29.41 1.40
3129 3343 7.976826 ACCAATCGCTGTATTCGTTAATAAAA 58.023 30.769 0.00 0.00 29.41 1.52
3130 3344 8.452534 ACCAATCGCTGTATTCGTTAATAAAAA 58.547 29.630 0.00 0.00 29.41 1.94
3131 3345 8.730427 CCAATCGCTGTATTCGTTAATAAAAAC 58.270 33.333 0.00 0.00 29.41 2.43
3132 3346 9.485591 CAATCGCTGTATTCGTTAATAAAAACT 57.514 29.630 0.00 0.00 29.41 2.66
3133 3347 9.485591 AATCGCTGTATTCGTTAATAAAAACTG 57.514 29.630 0.00 0.00 29.41 3.16
3134 3348 7.457868 TCGCTGTATTCGTTAATAAAAACTGG 58.542 34.615 0.00 0.00 29.41 4.00
3135 3349 7.118101 TCGCTGTATTCGTTAATAAAAACTGGT 59.882 33.333 0.00 0.00 29.41 4.00
3136 3350 7.747357 CGCTGTATTCGTTAATAAAAACTGGTT 59.253 33.333 0.00 0.00 29.41 3.67
3142 3356 8.958175 TTCGTTAATAAAAACTGGTTATGCAG 57.042 30.769 0.00 0.00 0.00 4.41
3143 3357 8.325421 TCGTTAATAAAAACTGGTTATGCAGA 57.675 30.769 0.00 0.00 0.00 4.26
3144 3358 8.784994 TCGTTAATAAAAACTGGTTATGCAGAA 58.215 29.630 0.00 0.00 0.00 3.02
3145 3359 9.400638 CGTTAATAAAAACTGGTTATGCAGAAA 57.599 29.630 0.00 0.00 0.00 2.52
3152 3366 4.410492 CTGGTTATGCAGAAACAGTGTC 57.590 45.455 27.15 6.09 38.99 3.67
3153 3367 3.814625 TGGTTATGCAGAAACAGTGTCA 58.185 40.909 7.93 0.00 0.00 3.58
3154 3368 3.563808 TGGTTATGCAGAAACAGTGTCAC 59.436 43.478 7.93 0.00 0.00 3.67
3155 3369 3.815401 GGTTATGCAGAAACAGTGTCACT 59.185 43.478 3.76 0.00 0.00 3.41
3156 3370 4.994852 GGTTATGCAGAAACAGTGTCACTA 59.005 41.667 3.76 0.00 0.00 2.74
3157 3371 5.643777 GGTTATGCAGAAACAGTGTCACTAT 59.356 40.000 3.76 0.00 0.00 2.12
3158 3372 6.816640 GGTTATGCAGAAACAGTGTCACTATA 59.183 38.462 3.76 0.00 0.00 1.31
3159 3373 7.010552 GGTTATGCAGAAACAGTGTCACTATAG 59.989 40.741 3.76 0.00 0.00 1.31
3160 3374 5.722021 TGCAGAAACAGTGTCACTATAGA 57.278 39.130 6.78 0.00 0.00 1.98
3161 3375 6.096673 TGCAGAAACAGTGTCACTATAGAA 57.903 37.500 6.78 0.00 0.00 2.10
3162 3376 6.521162 TGCAGAAACAGTGTCACTATAGAAA 58.479 36.000 6.78 0.00 0.00 2.52
3163 3377 6.646653 TGCAGAAACAGTGTCACTATAGAAAG 59.353 38.462 6.78 0.00 0.00 2.62
3164 3378 6.401581 GCAGAAACAGTGTCACTATAGAAAGC 60.402 42.308 6.78 1.78 0.00 3.51
3165 3379 6.646653 CAGAAACAGTGTCACTATAGAAAGCA 59.353 38.462 6.78 0.00 0.00 3.91
3166 3380 6.647067 AGAAACAGTGTCACTATAGAAAGCAC 59.353 38.462 6.78 9.50 0.00 4.40
3167 3381 5.730296 ACAGTGTCACTATAGAAAGCACT 57.270 39.130 6.78 11.42 36.32 4.40
3168 3382 6.102897 ACAGTGTCACTATAGAAAGCACTT 57.897 37.500 6.78 4.38 34.04 3.16
3169 3383 6.159988 ACAGTGTCACTATAGAAAGCACTTC 58.840 40.000 6.78 0.00 34.04 3.01
3170 3384 5.578727 CAGTGTCACTATAGAAAGCACTTCC 59.421 44.000 6.78 0.00 34.04 3.46
3171 3385 5.246203 AGTGTCACTATAGAAAGCACTTCCA 59.754 40.000 6.78 0.00 34.21 3.53
3172 3386 6.070538 AGTGTCACTATAGAAAGCACTTCCAT 60.071 38.462 6.78 0.00 34.21 3.41
3173 3387 6.595716 GTGTCACTATAGAAAGCACTTCCATT 59.404 38.462 6.78 0.00 34.21 3.16
3174 3388 6.595326 TGTCACTATAGAAAGCACTTCCATTG 59.405 38.462 6.78 0.00 34.21 2.82
3175 3389 5.586243 TCACTATAGAAAGCACTTCCATTGC 59.414 40.000 6.78 0.00 40.52 3.56
3181 3395 2.952714 GCACTTCCATTGCTGTCCT 58.047 52.632 0.00 0.00 37.00 3.85
3182 3396 0.807496 GCACTTCCATTGCTGTCCTC 59.193 55.000 0.00 0.00 37.00 3.71
3183 3397 1.081892 CACTTCCATTGCTGTCCTCG 58.918 55.000 0.00 0.00 0.00 4.63
3184 3398 0.687354 ACTTCCATTGCTGTCCTCGT 59.313 50.000 0.00 0.00 0.00 4.18
3185 3399 1.338200 ACTTCCATTGCTGTCCTCGTC 60.338 52.381 0.00 0.00 0.00 4.20
3186 3400 0.389817 TTCCATTGCTGTCCTCGTCG 60.390 55.000 0.00 0.00 0.00 5.12
3245 3459 3.567164 CAGCTACAATTGGGATGCTTAGG 59.433 47.826 10.83 0.00 0.00 2.69
3250 3464 3.511146 ACAATTGGGATGCTTAGGTGTTG 59.489 43.478 10.83 0.00 0.00 3.33
3404 3672 6.369890 TGCTTCTGAGACTTCATAATTCACAC 59.630 38.462 0.00 0.00 31.68 3.82
3457 3758 5.253330 TCAGGCTCAAAGTTTATAACCCAG 58.747 41.667 0.00 0.00 0.00 4.45
3607 3909 3.805971 ACTAAGAGTTTCCGTTTGAACCG 59.194 43.478 0.00 0.00 31.05 4.44
3617 3919 1.597663 CGTTTGAACCGTCAGAAGCTT 59.402 47.619 0.00 0.00 34.49 3.74
3634 3936 5.927115 AGAAGCTTCTAGGTAACAAAAGTCG 59.073 40.000 27.47 0.00 35.34 4.18
3658 3969 9.622004 TCGAAAACACTGAAATAGAGTAAGTAG 57.378 33.333 0.00 0.00 29.59 2.57
3659 3970 8.373992 CGAAAACACTGAAATAGAGTAAGTAGC 58.626 37.037 0.00 0.00 29.59 3.58
3660 3971 9.204570 GAAAACACTGAAATAGAGTAAGTAGCA 57.795 33.333 0.00 0.00 29.59 3.49
3661 3972 8.764524 AAACACTGAAATAGAGTAAGTAGCAG 57.235 34.615 0.00 0.00 29.59 4.24
3662 3973 6.334202 ACACTGAAATAGAGTAAGTAGCAGC 58.666 40.000 0.00 0.00 0.00 5.25
3663 3974 6.071334 ACACTGAAATAGAGTAAGTAGCAGCA 60.071 38.462 0.00 0.00 0.00 4.41
3664 3975 6.983307 CACTGAAATAGAGTAAGTAGCAGCAT 59.017 38.462 0.00 0.00 0.00 3.79
3665 3976 6.983307 ACTGAAATAGAGTAAGTAGCAGCATG 59.017 38.462 0.00 0.00 40.87 4.06
3666 3977 7.112452 TGAAATAGAGTAAGTAGCAGCATGA 57.888 36.000 0.00 0.00 39.69 3.07
3667 3978 7.730084 TGAAATAGAGTAAGTAGCAGCATGAT 58.270 34.615 0.00 0.00 39.69 2.45
3668 3979 8.860088 TGAAATAGAGTAAGTAGCAGCATGATA 58.140 33.333 0.00 0.00 39.69 2.15
3677 3988 3.248495 AGCAGCATGATATCATCCTCG 57.752 47.619 15.49 8.17 39.69 4.63
3743 4066 2.827921 GTCCCTGGCAATCACAAAAGAT 59.172 45.455 0.00 0.00 0.00 2.40
3776 4099 8.867097 AGTACTCCAAATTACAGAACAGTTCTA 58.133 33.333 15.73 0.92 38.11 2.10
3789 4112 8.857098 ACAGAACAGTTCTACAACTTATGACTA 58.143 33.333 15.73 0.00 41.24 2.59
3801 4124 6.975772 ACAACTTATGACTAGATCTTCGAAGC 59.024 38.462 20.56 7.48 0.00 3.86
3802 4125 6.952773 ACTTATGACTAGATCTTCGAAGCT 57.047 37.500 20.56 11.18 0.00 3.74
3902 4225 6.514012 TGATTTGTGATGGTGAGGGTATAT 57.486 37.500 0.00 0.00 0.00 0.86
3965 4288 9.162764 CACTAGTTAAGGCTACATTACAATTGT 57.837 33.333 16.68 16.68 0.00 2.71
3970 4293 6.743575 AAGGCTACATTACAATTGTCTGTC 57.256 37.500 22.85 13.62 0.00 3.51
3973 4296 6.149474 AGGCTACATTACAATTGTCTGTCAAC 59.851 38.462 22.85 16.01 38.97 3.18
3975 4298 6.128661 GCTACATTACAATTGTCTGTCAACGA 60.129 38.462 22.85 10.10 38.97 3.85
4030 4353 3.371898 TGACAAGCAAATCAGTATCAGCG 59.628 43.478 0.00 0.00 0.00 5.18
4037 4360 2.627515 ATCAGTATCAGCGGCACAAT 57.372 45.000 1.45 0.00 0.00 2.71
4042 4365 0.546122 TATCAGCGGCACAATCCCTT 59.454 50.000 1.45 0.00 0.00 3.95
4047 4370 1.440145 GCGGCACAATCCCTTAGAGC 61.440 60.000 0.00 0.00 0.00 4.09
4048 4371 0.107703 CGGCACAATCCCTTAGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
4049 4372 1.475751 CGGCACAATCCCTTAGAGCAT 60.476 52.381 0.00 0.00 0.00 3.79
4050 4373 1.952296 GGCACAATCCCTTAGAGCATG 59.048 52.381 0.00 0.00 0.00 4.06
4051 4374 1.952296 GCACAATCCCTTAGAGCATGG 59.048 52.381 0.00 0.00 0.00 3.66
4052 4375 2.684927 GCACAATCCCTTAGAGCATGGT 60.685 50.000 0.00 0.00 0.00 3.55
4053 4376 3.624777 CACAATCCCTTAGAGCATGGTT 58.375 45.455 0.00 0.00 0.00 3.67
4054 4377 4.780815 CACAATCCCTTAGAGCATGGTTA 58.219 43.478 0.00 0.00 0.00 2.85
4055 4378 5.192927 CACAATCCCTTAGAGCATGGTTAA 58.807 41.667 0.00 0.00 0.00 2.01
4056 4379 5.829924 CACAATCCCTTAGAGCATGGTTAAT 59.170 40.000 0.00 0.00 0.00 1.40
4057 4380 6.998074 CACAATCCCTTAGAGCATGGTTAATA 59.002 38.462 0.00 0.00 0.00 0.98
4058 4381 7.173907 CACAATCCCTTAGAGCATGGTTAATAG 59.826 40.741 0.00 0.00 0.00 1.73
4059 4382 7.147302 ACAATCCCTTAGAGCATGGTTAATAGT 60.147 37.037 0.00 0.00 0.00 2.12
4060 4383 8.375506 CAATCCCTTAGAGCATGGTTAATAGTA 58.624 37.037 0.00 0.00 0.00 1.82
4061 4384 8.686739 ATCCCTTAGAGCATGGTTAATAGTAT 57.313 34.615 0.00 0.00 0.00 2.12
4062 4385 9.784376 ATCCCTTAGAGCATGGTTAATAGTATA 57.216 33.333 0.00 0.00 0.00 1.47
4063 4386 9.256228 TCCCTTAGAGCATGGTTAATAGTATAG 57.744 37.037 0.00 0.00 0.00 1.31
4064 4387 7.982354 CCCTTAGAGCATGGTTAATAGTATAGC 59.018 40.741 0.00 0.00 0.00 2.97
4065 4388 7.982354 CCTTAGAGCATGGTTAATAGTATAGCC 59.018 40.741 0.00 0.00 0.00 3.93
4066 4389 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
4067 4390 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
4068 4391 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
4069 4392 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
4070 4393 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
4071 4394 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
4093 4416 1.972872 GCTATAAGCCTGTGCCATGT 58.027 50.000 0.00 0.00 38.69 3.21
4094 4417 1.876156 GCTATAAGCCTGTGCCATGTC 59.124 52.381 0.00 0.00 38.69 3.06
4095 4418 2.746142 GCTATAAGCCTGTGCCATGTCA 60.746 50.000 0.00 0.00 38.69 3.58
4096 4419 2.742428 ATAAGCCTGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
4097 4420 2.042686 TAAGCCTGTGCCATGTCATC 57.957 50.000 0.00 0.00 38.69 2.92
4098 4421 0.330604 AAGCCTGTGCCATGTCATCT 59.669 50.000 0.00 0.00 38.69 2.90
4099 4422 1.206878 AGCCTGTGCCATGTCATCTA 58.793 50.000 0.00 0.00 38.69 1.98
4100 4423 1.134280 AGCCTGTGCCATGTCATCTAC 60.134 52.381 0.00 0.00 38.69 2.59
4101 4424 1.575244 CCTGTGCCATGTCATCTACG 58.425 55.000 0.00 0.00 0.00 3.51
4102 4425 1.575244 CTGTGCCATGTCATCTACGG 58.425 55.000 0.00 0.00 0.00 4.02
4103 4426 0.461870 TGTGCCATGTCATCTACGGC 60.462 55.000 5.19 5.19 43.28 5.68
4104 4427 1.146041 TGCCATGTCATCTACGGCC 59.854 57.895 8.91 0.00 42.27 6.13
4105 4428 1.598130 GCCATGTCATCTACGGCCC 60.598 63.158 0.00 0.00 36.73 5.80
4106 4429 1.829456 CCATGTCATCTACGGCCCA 59.171 57.895 0.00 0.00 0.00 5.36
4107 4430 0.397941 CCATGTCATCTACGGCCCAT 59.602 55.000 0.00 0.00 0.00 4.00
4108 4431 1.609061 CCATGTCATCTACGGCCCATC 60.609 57.143 0.00 0.00 0.00 3.51
4109 4432 1.345741 CATGTCATCTACGGCCCATCT 59.654 52.381 0.00 0.00 0.00 2.90
4110 4433 1.496060 TGTCATCTACGGCCCATCTT 58.504 50.000 0.00 0.00 0.00 2.40
4111 4434 2.673258 TGTCATCTACGGCCCATCTTA 58.327 47.619 0.00 0.00 0.00 2.10
4112 4435 3.239449 TGTCATCTACGGCCCATCTTAT 58.761 45.455 0.00 0.00 0.00 1.73
4113 4436 4.412843 TGTCATCTACGGCCCATCTTATA 58.587 43.478 0.00 0.00 0.00 0.98
4114 4437 4.462834 TGTCATCTACGGCCCATCTTATAG 59.537 45.833 0.00 0.00 0.00 1.31
4115 4438 3.447586 TCATCTACGGCCCATCTTATAGC 59.552 47.826 0.00 0.00 0.00 2.97
4116 4439 2.176889 TCTACGGCCCATCTTATAGCC 58.823 52.381 0.00 0.00 42.18 3.93
4117 4440 1.899814 CTACGGCCCATCTTATAGCCA 59.100 52.381 0.00 0.00 46.08 4.75
4118 4441 1.136828 ACGGCCCATCTTATAGCCAA 58.863 50.000 0.00 0.00 46.08 4.52
4119 4442 1.202770 ACGGCCCATCTTATAGCCAAC 60.203 52.381 0.00 0.00 46.08 3.77
4120 4443 1.202758 CGGCCCATCTTATAGCCAACA 60.203 52.381 0.00 0.00 46.08 3.33
4121 4444 2.553028 CGGCCCATCTTATAGCCAACAT 60.553 50.000 0.00 0.00 46.08 2.71
4122 4445 2.821969 GGCCCATCTTATAGCCAACATG 59.178 50.000 0.00 0.00 45.07 3.21
4123 4446 3.490348 GCCCATCTTATAGCCAACATGT 58.510 45.455 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.202330 CTGGCTGTCTCTTCCAGGAT 58.798 55.000 0.00 0.00 42.70 3.24
138 153 0.341258 ATCTTGGGGAGGAGCAGAGA 59.659 55.000 0.00 0.00 0.00 3.10
176 191 1.404315 GGTAACTTGCTCCTCTGACCG 60.404 57.143 0.00 0.00 0.00 4.79
202 217 4.581309 TCCTCTACCCGTTCTAAAGAGA 57.419 45.455 0.00 0.00 36.60 3.10
203 218 4.461781 TGTTCCTCTACCCGTTCTAAAGAG 59.538 45.833 0.00 0.00 34.71 2.85
204 219 4.410099 TGTTCCTCTACCCGTTCTAAAGA 58.590 43.478 0.00 0.00 0.00 2.52
252 300 1.079057 GAGTCTTCGGGCCAGGAAC 60.079 63.158 4.39 0.00 0.00 3.62
259 307 1.801178 CAAGAACAAGAGTCTTCGGGC 59.199 52.381 1.26 0.00 0.00 6.13
265 313 2.627515 TGCAGCAAGAACAAGAGTCT 57.372 45.000 0.00 0.00 0.00 3.24
290 375 3.709633 AGGCTGTCCTGCGATGCA 61.710 61.111 0.00 0.00 42.34 3.96
298 383 2.044452 GCAAAAAGCAGGCTGTCCT 58.956 52.632 17.16 2.22 45.66 3.85
299 384 4.661461 GCAAAAAGCAGGCTGTCC 57.339 55.556 17.16 0.00 44.79 4.02
308 393 6.362686 GGCAAGTAATAAACAAGCAAAAAGC 58.637 36.000 0.00 0.00 46.19 3.51
309 394 6.073276 GGGGCAAGTAATAAACAAGCAAAAAG 60.073 38.462 0.00 0.00 33.30 2.27
310 395 5.760743 GGGGCAAGTAATAAACAAGCAAAAA 59.239 36.000 0.00 0.00 33.30 1.94
311 396 5.071115 AGGGGCAAGTAATAAACAAGCAAAA 59.929 36.000 0.00 0.00 33.30 2.44
312 397 4.591072 AGGGGCAAGTAATAAACAAGCAAA 59.409 37.500 0.00 0.00 33.30 3.68
313 398 4.156477 AGGGGCAAGTAATAAACAAGCAA 58.844 39.130 0.00 0.00 33.30 3.91
314 399 3.761752 GAGGGGCAAGTAATAAACAAGCA 59.238 43.478 0.00 0.00 33.30 3.91
315 400 3.130516 GGAGGGGCAAGTAATAAACAAGC 59.869 47.826 0.00 0.00 0.00 4.01
316 401 3.699538 GGGAGGGGCAAGTAATAAACAAG 59.300 47.826 0.00 0.00 0.00 3.16
317 402 3.564790 GGGGAGGGGCAAGTAATAAACAA 60.565 47.826 0.00 0.00 0.00 2.83
318 403 2.024751 GGGGAGGGGCAAGTAATAAACA 60.025 50.000 0.00 0.00 0.00 2.83
319 404 2.243994 AGGGGAGGGGCAAGTAATAAAC 59.756 50.000 0.00 0.00 0.00 2.01
320 405 2.512476 GAGGGGAGGGGCAAGTAATAAA 59.488 50.000 0.00 0.00 0.00 1.40
321 406 2.132686 GAGGGGAGGGGCAAGTAATAA 58.867 52.381 0.00 0.00 0.00 1.40
322 407 1.697945 GGAGGGGAGGGGCAAGTAATA 60.698 57.143 0.00 0.00 0.00 0.98
323 408 0.994050 GGAGGGGAGGGGCAAGTAAT 60.994 60.000 0.00 0.00 0.00 1.89
324 409 1.618447 GGAGGGGAGGGGCAAGTAA 60.618 63.158 0.00 0.00 0.00 2.24
325 410 1.233172 TAGGAGGGGAGGGGCAAGTA 61.233 60.000 0.00 0.00 0.00 2.24
326 411 2.577757 TAGGAGGGGAGGGGCAAGT 61.578 63.158 0.00 0.00 0.00 3.16
327 412 2.073101 GTAGGAGGGGAGGGGCAAG 61.073 68.421 0.00 0.00 0.00 4.01
328 413 2.042261 GTAGGAGGGGAGGGGCAA 59.958 66.667 0.00 0.00 0.00 4.52
329 414 2.840203 CTTGTAGGAGGGGAGGGGCA 62.840 65.000 0.00 0.00 0.00 5.36
330 415 2.042261 TTGTAGGAGGGGAGGGGC 59.958 66.667 0.00 0.00 0.00 5.80
331 416 2.073101 GCTTGTAGGAGGGGAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
332 417 1.306997 TGCTTGTAGGAGGGGAGGG 60.307 63.158 0.00 0.00 0.00 4.30
333 418 2.216148 CTGCTTGTAGGAGGGGAGG 58.784 63.158 0.00 0.00 29.18 4.30
348 433 3.832041 GGGAGTACTCGCATTCCCTGC 62.832 61.905 29.33 7.36 44.82 4.85
349 434 0.105039 GGGAGTACTCGCATTCCCTG 59.895 60.000 29.33 0.00 44.82 4.45
350 435 2.517609 GGGAGTACTCGCATTCCCT 58.482 57.895 29.33 0.00 44.82 4.20
352 437 0.389757 GGAGGGAGTACTCGCATTCC 59.610 60.000 33.61 28.40 43.96 3.01
353 438 1.112113 TGGAGGGAGTACTCGCATTC 58.888 55.000 33.61 24.76 43.96 2.67
354 439 1.794714 ATGGAGGGAGTACTCGCATT 58.205 50.000 33.61 19.32 43.96 3.56
355 440 1.794714 AATGGAGGGAGTACTCGCAT 58.205 50.000 33.61 21.85 43.96 4.73
356 441 1.480954 GAAATGGAGGGAGTACTCGCA 59.519 52.381 33.61 18.83 43.96 5.10
357 442 1.757699 AGAAATGGAGGGAGTACTCGC 59.242 52.381 27.68 27.68 42.14 5.03
358 443 5.593679 TTAAGAAATGGAGGGAGTACTCG 57.406 43.478 16.56 0.00 38.39 4.18
359 444 8.019656 TGTATTAAGAAATGGAGGGAGTACTC 57.980 38.462 14.87 14.87 36.76 2.59
360 445 7.989947 TGTATTAAGAAATGGAGGGAGTACT 57.010 36.000 0.00 0.00 0.00 2.73
361 446 8.265764 ACTTGTATTAAGAAATGGAGGGAGTAC 58.734 37.037 0.00 0.00 0.00 2.73
362 447 8.388656 ACTTGTATTAAGAAATGGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
363 448 7.272144 ACTTGTATTAAGAAATGGAGGGAGT 57.728 36.000 0.00 0.00 0.00 3.85
364 449 8.581253 AAACTTGTATTAAGAAATGGAGGGAG 57.419 34.615 0.00 0.00 0.00 4.30
365 450 8.950007 AAAACTTGTATTAAGAAATGGAGGGA 57.050 30.769 0.00 0.00 0.00 4.20
394 479 9.626045 CGTATGTAGTGCATATTGAAATCTCTA 57.374 33.333 4.13 0.00 41.58 2.43
395 480 8.144478 ACGTATGTAGTGCATATTGAAATCTCT 58.856 33.333 4.13 0.00 41.58 3.10
396 481 8.299262 ACGTATGTAGTGCATATTGAAATCTC 57.701 34.615 4.13 0.00 41.58 2.75
397 482 9.929180 ATACGTATGTAGTGCATATTGAAATCT 57.071 29.630 7.41 0.00 41.58 2.40
399 484 9.929180 AGATACGTATGTAGTGCATATTGAAAT 57.071 29.630 13.97 1.61 41.58 2.17
408 493 9.028185 CGTCTATATAGATACGTATGTAGTGCA 57.972 37.037 13.97 1.19 34.39 4.57
409 494 9.242477 TCGTCTATATAGATACGTATGTAGTGC 57.758 37.037 13.97 0.00 34.39 4.40
411 496 9.444534 CGTCGTCTATATAGATACGTATGTAGT 57.555 37.037 26.64 8.91 38.57 2.73
412 497 9.657121 TCGTCGTCTATATAGATACGTATGTAG 57.343 37.037 29.93 3.35 41.36 2.74
413 498 9.439537 GTCGTCGTCTATATAGATACGTATGTA 57.560 37.037 29.93 14.05 41.36 2.29
414 499 7.164990 CGTCGTCGTCTATATAGATACGTATGT 59.835 40.741 29.93 12.00 41.36 2.29
415 500 7.374491 TCGTCGTCGTCTATATAGATACGTATG 59.626 40.741 29.93 24.33 41.36 2.39
416 501 7.410485 TCGTCGTCGTCTATATAGATACGTAT 58.590 38.462 29.93 8.05 41.36 3.06
417 502 6.772078 TCGTCGTCGTCTATATAGATACGTA 58.228 40.000 29.93 21.31 41.36 3.57
418 503 5.631992 TCGTCGTCGTCTATATAGATACGT 58.368 41.667 29.93 0.00 41.36 3.57
419 504 6.730642 ATCGTCGTCGTCTATATAGATACG 57.269 41.667 27.88 27.88 41.67 3.06
420 505 8.553817 TGTATCGTCGTCGTCTATATAGATAC 57.446 38.462 15.43 14.62 38.68 2.24
421 506 9.178427 CATGTATCGTCGTCGTCTATATAGATA 57.822 37.037 15.43 4.89 38.33 1.98
422 507 7.919621 TCATGTATCGTCGTCGTCTATATAGAT 59.080 37.037 15.43 0.00 38.33 1.98
423 508 7.253422 TCATGTATCGTCGTCGTCTATATAGA 58.747 38.462 8.44 8.44 38.33 1.98
424 509 7.447243 TCATGTATCGTCGTCGTCTATATAG 57.553 40.000 3.10 3.10 38.33 1.31
425 510 7.816945 TTCATGTATCGTCGTCGTCTATATA 57.183 36.000 1.33 0.00 38.33 0.86
426 511 6.716898 TTCATGTATCGTCGTCGTCTATAT 57.283 37.500 1.33 0.00 38.33 0.86
427 512 6.529463 TTTCATGTATCGTCGTCGTCTATA 57.471 37.500 1.33 0.00 38.33 1.31
428 513 5.413969 TTTCATGTATCGTCGTCGTCTAT 57.586 39.130 1.33 0.00 38.33 1.98
429 514 4.863152 TTTCATGTATCGTCGTCGTCTA 57.137 40.909 1.33 0.00 38.33 2.59
430 515 3.752412 TTTCATGTATCGTCGTCGTCT 57.248 42.857 1.33 0.00 38.33 4.18
431 516 6.670990 ATAATTTCATGTATCGTCGTCGTC 57.329 37.500 1.33 0.00 38.33 4.20
432 517 7.859377 ACTAATAATTTCATGTATCGTCGTCGT 59.141 33.333 1.33 0.00 38.33 4.34
433 518 8.212372 ACTAATAATTTCATGTATCGTCGTCG 57.788 34.615 0.00 0.00 38.55 5.12
467 552 8.212430 TAATTGAGCCAAATTGACACATGTGTG 61.212 37.037 35.10 19.38 39.78 3.82
468 553 6.239261 TAATTGAGCCAAATTGACACATGTGT 60.239 34.615 30.98 30.98 37.45 3.72
469 554 3.646611 TGAGCCAAATTGACACATGTG 57.353 42.857 24.25 24.25 0.00 3.21
470 555 4.877378 ATTGAGCCAAATTGACACATGT 57.123 36.364 0.00 0.00 0.00 3.21
471 556 7.837202 ATTAATTGAGCCAAATTGACACATG 57.163 32.000 0.00 0.00 32.16 3.21
472 557 8.199449 CCTATTAATTGAGCCAAATTGACACAT 58.801 33.333 0.00 0.00 32.16 3.21
473 558 7.395772 TCCTATTAATTGAGCCAAATTGACACA 59.604 33.333 0.00 0.00 32.16 3.72
474 559 7.771183 TCCTATTAATTGAGCCAAATTGACAC 58.229 34.615 0.00 0.00 32.16 3.67
475 560 7.416664 GCTCCTATTAATTGAGCCAAATTGACA 60.417 37.037 20.77 0.00 44.45 3.58
476 561 6.920210 GCTCCTATTAATTGAGCCAAATTGAC 59.080 38.462 20.77 0.00 44.45 3.18
477 562 7.042797 GCTCCTATTAATTGAGCCAAATTGA 57.957 36.000 20.77 0.00 44.45 2.57
486 571 8.388484 AGTTAAGCATGCTCCTATTAATTGAG 57.612 34.615 22.93 9.29 0.00 3.02
487 572 8.752005 AAGTTAAGCATGCTCCTATTAATTGA 57.248 30.769 22.93 0.00 0.00 2.57
488 573 9.807649 AAAAGTTAAGCATGCTCCTATTAATTG 57.192 29.630 22.93 0.00 0.00 2.32
542 627 4.859629 ATCGTCCTAAAAGAAATGACGC 57.140 40.909 5.55 0.00 46.06 5.19
551 636 3.181510 CGAGGGCAAAATCGTCCTAAAAG 60.182 47.826 0.00 0.00 42.53 2.27
624 709 1.540797 CCTCCGGTGTTTGGTCGTTTA 60.541 52.381 0.00 0.00 0.00 2.01
639 724 2.554272 CGCCGTTTTTCACCTCCG 59.446 61.111 0.00 0.00 0.00 4.63
658 743 4.819761 GAGCACGGCGAGATGGCA 62.820 66.667 16.62 0.00 45.16 4.92
724 834 6.032460 CGAAAAATGAAAAACTATCAGCGACC 59.968 38.462 0.00 0.00 0.00 4.79
786 906 4.342092 AGGGAAATGCAAATTAGGGATTCG 59.658 41.667 0.00 0.00 0.00 3.34
787 907 5.876651 AGGGAAATGCAAATTAGGGATTC 57.123 39.130 0.00 0.00 0.00 2.52
788 908 6.641161 AAAGGGAAATGCAAATTAGGGATT 57.359 33.333 0.00 0.00 0.00 3.01
795 930 7.501892 ACAACACATAAAAGGGAAATGCAAATT 59.498 29.630 0.00 0.00 0.00 1.82
845 980 5.355350 CAGTCAATGTGGGGAAGTAGAAATC 59.645 44.000 0.00 0.00 0.00 2.17
937 1081 5.786311 ACTGCTACCACTTGAAAATACGTA 58.214 37.500 0.00 0.00 0.00 3.57
938 1082 4.638304 ACTGCTACCACTTGAAAATACGT 58.362 39.130 0.00 0.00 0.00 3.57
939 1083 5.220416 GCTACTGCTACCACTTGAAAATACG 60.220 44.000 0.00 0.00 36.03 3.06
940 1084 5.642063 TGCTACTGCTACCACTTGAAAATAC 59.358 40.000 0.00 0.00 40.48 1.89
1054 1231 2.439507 TCCCCATCTAGATTTCCTGTGC 59.560 50.000 1.33 0.00 0.00 4.57
1140 1317 1.281899 CGGCGAAGAAGAGGAACATC 58.718 55.000 0.00 0.00 0.00 3.06
1180 1357 3.718815 AGAACCTGAGAAACGAGTTGAC 58.281 45.455 0.00 0.00 0.00 3.18
1277 1454 2.457598 AGAAAGATAGTCCAGCGGTCA 58.542 47.619 0.00 0.00 0.00 4.02
1282 1459 3.802866 CCCAGAAGAAAGATAGTCCAGC 58.197 50.000 0.00 0.00 0.00 4.85
1284 1461 3.055094 GTGCCCAGAAGAAAGATAGTCCA 60.055 47.826 0.00 0.00 0.00 4.02
1383 1560 6.182039 TGCATAAACAGAGTCAGTAAATGC 57.818 37.500 19.75 19.75 37.57 3.56
1444 1621 1.081242 GCTCCACGCCATGTTTGTG 60.081 57.895 0.00 0.00 0.00 3.33
1452 1629 0.685097 AAACTAGAAGCTCCACGCCA 59.315 50.000 0.00 0.00 40.39 5.69
1477 1654 2.309613 TCCAGCAGCAAACACAAAGAT 58.690 42.857 0.00 0.00 0.00 2.40
1570 1747 3.609103 CACCTGTTGCTTGTACTGTTC 57.391 47.619 0.00 0.00 0.00 3.18
1594 1771 1.617947 GGATCCTCGGCAACCTCACT 61.618 60.000 3.84 0.00 0.00 3.41
1596 1773 2.367202 GGGATCCTCGGCAACCTCA 61.367 63.158 12.58 0.00 0.00 3.86
1623 1800 1.755959 TGCAGGACAGCACAAACAATT 59.244 42.857 0.00 0.00 40.11 2.32
1699 1876 2.024080 TGCTTGGGGCTTCTTGGATAAT 60.024 45.455 0.00 0.00 42.39 1.28
1788 1965 0.397941 TGCCACTCCTTGTTCTGAGG 59.602 55.000 0.00 0.00 35.53 3.86
2082 2259 3.191371 GGAAGTTGTACTGCCCAATTGAG 59.809 47.826 7.12 0.00 38.02 3.02
2145 2322 0.388520 TGGTCATTGCTCGTCGACTG 60.389 55.000 14.70 7.51 0.00 3.51
2298 2475 3.123453 TGTTGATTTCAGCATCGAAGTCG 59.877 43.478 0.00 0.00 35.12 4.18
2373 2550 4.912586 TCCCACCAAAATCTTCACGAATA 58.087 39.130 0.00 0.00 0.00 1.75
2431 2608 7.016465 AGGAGGATGAAGAGGATATTTTCTCAG 59.984 40.741 0.00 0.00 32.76 3.35
2558 2735 0.804364 CTCATTAAGCGGCAACAGCA 59.196 50.000 1.45 0.00 38.34 4.41
2571 2748 4.669318 GCGTATATAAGGCGCTCTCATTA 58.331 43.478 7.64 0.00 46.55 1.90
2628 2805 0.179065 CCGAATCCTGCTGCTCATCA 60.179 55.000 0.00 0.00 0.00 3.07
2646 2823 3.120165 GCTCGATGTTGAAGAAACCTTCC 60.120 47.826 0.00 0.00 39.36 3.46
2691 2868 3.717707 CTTCGTCCATATGTCGACCAAT 58.282 45.455 14.12 3.12 33.38 3.16
2697 2874 0.855349 GCAGCTTCGTCCATATGTCG 59.145 55.000 1.24 6.59 0.00 4.35
2760 2937 2.227036 CCCTCCTCTGGCCAAGTGT 61.227 63.158 7.01 0.00 0.00 3.55
2877 3054 4.989168 GGATTTCCGAAGACGTATGCTATT 59.011 41.667 0.00 0.00 37.88 1.73
2923 3100 1.076412 TGCAGGGCTTGTGTTGGAA 60.076 52.632 0.00 0.00 0.00 3.53
2949 3126 2.561419 TCGAATGAAGAACGGAGGAGTT 59.439 45.455 0.00 0.00 36.99 3.01
2997 3174 1.826024 GACGGGAGATGTGCCAGAT 59.174 57.895 0.23 0.00 32.29 2.90
3004 3181 1.743958 CTGTTCTACGACGGGAGATGT 59.256 52.381 0.00 0.00 0.00 3.06
3005 3182 1.743958 ACTGTTCTACGACGGGAGATG 59.256 52.381 0.00 0.00 0.00 2.90
3011 3188 3.188048 ACTTCAGTACTGTTCTACGACGG 59.812 47.826 21.99 4.79 0.00 4.79
3014 3191 9.002600 TGTATAAACTTCAGTACTGTTCTACGA 57.997 33.333 21.99 4.87 0.00 3.43
3081 3258 1.730501 TCTGCACTGCTCATTACTGC 58.269 50.000 1.98 0.00 0.00 4.40
3082 3259 4.959596 ATTTCTGCACTGCTCATTACTG 57.040 40.909 1.98 0.00 0.00 2.74
3083 3260 4.878397 GGTATTTCTGCACTGCTCATTACT 59.122 41.667 1.98 0.00 0.00 2.24
3085 3262 4.842574 TGGTATTTCTGCACTGCTCATTA 58.157 39.130 1.98 0.00 0.00 1.90
3089 3303 3.242543 CGATTGGTATTTCTGCACTGCTC 60.243 47.826 1.98 0.00 0.00 4.26
3090 3304 2.679837 CGATTGGTATTTCTGCACTGCT 59.320 45.455 1.98 0.00 0.00 4.24
3099 3313 5.652744 ACGAATACAGCGATTGGTATTTC 57.347 39.130 0.00 0.00 39.58 2.17
3108 3322 8.120465 CCAGTTTTTATTAACGAATACAGCGAT 58.880 33.333 0.00 0.00 33.26 4.58
3109 3323 7.118101 ACCAGTTTTTATTAACGAATACAGCGA 59.882 33.333 0.00 0.00 33.26 4.93
3119 3333 8.958175 TTCTGCATAACCAGTTTTTATTAACG 57.042 30.769 0.00 0.00 34.47 3.18
3122 3336 9.906660 CTGTTTCTGCATAACCAGTTTTTATTA 57.093 29.630 1.75 0.00 34.47 0.98
3123 3337 8.421002 ACTGTTTCTGCATAACCAGTTTTTATT 58.579 29.630 8.89 0.00 34.47 1.40
3124 3338 7.867403 CACTGTTTCTGCATAACCAGTTTTTAT 59.133 33.333 11.56 0.00 34.47 1.40
3125 3339 7.147983 ACACTGTTTCTGCATAACCAGTTTTTA 60.148 33.333 11.56 0.00 34.47 1.52
3126 3340 6.042143 CACTGTTTCTGCATAACCAGTTTTT 58.958 36.000 11.56 0.00 34.47 1.94
3127 3341 5.127031 ACACTGTTTCTGCATAACCAGTTTT 59.873 36.000 11.56 1.06 34.47 2.43
3128 3342 4.644685 ACACTGTTTCTGCATAACCAGTTT 59.355 37.500 11.56 4.16 34.47 2.66
3129 3343 4.207165 ACACTGTTTCTGCATAACCAGTT 58.793 39.130 11.56 2.91 34.47 3.16
3130 3344 3.815401 GACACTGTTTCTGCATAACCAGT 59.185 43.478 8.89 8.89 34.47 4.00
3131 3345 3.814842 TGACACTGTTTCTGCATAACCAG 59.185 43.478 7.68 7.68 0.00 4.00
3132 3346 3.563808 GTGACACTGTTTCTGCATAACCA 59.436 43.478 0.00 0.00 0.00 3.67
3133 3347 3.815401 AGTGACACTGTTTCTGCATAACC 59.185 43.478 7.47 0.00 0.00 2.85
3134 3348 6.727824 ATAGTGACACTGTTTCTGCATAAC 57.272 37.500 18.58 5.20 0.00 1.89
3135 3349 7.836842 TCTATAGTGACACTGTTTCTGCATAA 58.163 34.615 18.58 0.00 0.00 1.90
3136 3350 7.404671 TCTATAGTGACACTGTTTCTGCATA 57.595 36.000 18.58 4.56 0.00 3.14
3137 3351 6.286240 TCTATAGTGACACTGTTTCTGCAT 57.714 37.500 18.58 3.57 0.00 3.96
3138 3352 5.722021 TCTATAGTGACACTGTTTCTGCA 57.278 39.130 18.58 0.00 0.00 4.41
3139 3353 6.401581 GCTTTCTATAGTGACACTGTTTCTGC 60.402 42.308 18.58 10.15 0.00 4.26
3140 3354 6.646653 TGCTTTCTATAGTGACACTGTTTCTG 59.353 38.462 18.58 4.46 0.00 3.02
3141 3355 6.647067 GTGCTTTCTATAGTGACACTGTTTCT 59.353 38.462 18.58 0.71 0.00 2.52
3142 3356 6.647067 AGTGCTTTCTATAGTGACACTGTTTC 59.353 38.462 18.58 0.46 35.68 2.78
3143 3357 6.525629 AGTGCTTTCTATAGTGACACTGTTT 58.474 36.000 18.58 5.65 35.68 2.83
3144 3358 6.102897 AGTGCTTTCTATAGTGACACTGTT 57.897 37.500 18.58 8.10 35.68 3.16
3145 3359 5.730296 AGTGCTTTCTATAGTGACACTGT 57.270 39.130 18.58 14.13 35.68 3.55
3146 3360 5.578727 GGAAGTGCTTTCTATAGTGACACTG 59.421 44.000 18.58 1.58 37.01 3.66
3147 3361 5.246203 TGGAAGTGCTTTCTATAGTGACACT 59.754 40.000 13.68 13.68 38.47 3.55
3148 3362 5.479306 TGGAAGTGCTTTCTATAGTGACAC 58.521 41.667 0.00 0.00 36.03 3.67
3149 3363 5.738619 TGGAAGTGCTTTCTATAGTGACA 57.261 39.130 0.00 0.00 36.03 3.58
3150 3364 7.009568 CAATGGAAGTGCTTTCTATAGTGAC 57.990 40.000 0.00 0.00 36.12 3.67
3164 3378 1.081892 CGAGGACAGCAATGGAAGTG 58.918 55.000 0.00 0.00 33.24 3.16
3165 3379 0.687354 ACGAGGACAGCAATGGAAGT 59.313 50.000 0.00 0.00 0.00 3.01
3166 3380 1.363744 GACGAGGACAGCAATGGAAG 58.636 55.000 0.00 0.00 0.00 3.46
3167 3381 0.389817 CGACGAGGACAGCAATGGAA 60.390 55.000 0.00 0.00 0.00 3.53
3168 3382 1.215382 CGACGAGGACAGCAATGGA 59.785 57.895 0.00 0.00 0.00 3.41
3169 3383 1.078759 GTCGACGAGGACAGCAATGG 61.079 60.000 0.00 0.00 36.91 3.16
3170 3384 0.388520 TGTCGACGAGGACAGCAATG 60.389 55.000 11.62 0.00 41.76 2.82
3171 3385 1.964448 TGTCGACGAGGACAGCAAT 59.036 52.632 11.62 0.00 41.76 3.56
3172 3386 3.439008 TGTCGACGAGGACAGCAA 58.561 55.556 11.62 0.00 41.76 3.91
3177 3391 1.993370 CAAAGGAATGTCGACGAGGAC 59.007 52.381 11.62 0.00 37.45 3.85
3178 3392 1.616865 ACAAAGGAATGTCGACGAGGA 59.383 47.619 11.62 0.00 0.00 3.71
3179 3393 2.080286 ACAAAGGAATGTCGACGAGG 57.920 50.000 11.62 0.00 0.00 4.63
3180 3394 2.800544 ACAACAAAGGAATGTCGACGAG 59.199 45.455 11.62 0.00 31.81 4.18
3181 3395 2.542178 CACAACAAAGGAATGTCGACGA 59.458 45.455 11.62 0.00 31.81 4.20
3182 3396 2.349438 CCACAACAAAGGAATGTCGACG 60.349 50.000 11.62 0.00 31.81 5.12
3183 3397 2.616842 ACCACAACAAAGGAATGTCGAC 59.383 45.455 9.11 9.11 31.81 4.20
3184 3398 2.925724 ACCACAACAAAGGAATGTCGA 58.074 42.857 0.00 0.00 31.81 4.20
3185 3399 3.364964 GCTACCACAACAAAGGAATGTCG 60.365 47.826 0.00 0.00 31.81 4.35
3186 3400 3.568007 TGCTACCACAACAAAGGAATGTC 59.432 43.478 0.00 0.00 31.81 3.06
3245 3459 3.186613 GGCTTCAGTTAGTACAGCAACAC 59.813 47.826 0.00 0.00 31.71 3.32
3250 3464 3.594603 TCTGGCTTCAGTTAGTACAGC 57.405 47.619 0.00 0.00 39.45 4.40
3300 3514 4.431416 TTTTGGCTTCTCAGTTCCTGTA 57.569 40.909 0.00 0.00 32.61 2.74
3365 3633 5.420421 TCTCAGAAGCAGTCTTGTAAGCTAT 59.580 40.000 0.00 0.00 36.07 2.97
3372 3640 3.386078 TGAAGTCTCAGAAGCAGTCTTGT 59.614 43.478 0.00 0.00 32.70 3.16
3457 3758 4.186159 TCAGCCGTGTTAATTAGTTAGGC 58.814 43.478 13.04 13.04 43.29 3.93
3607 3909 6.706716 ACTTTTGTTACCTAGAAGCTTCTGAC 59.293 38.462 34.26 23.33 38.19 3.51
3617 3919 7.010738 CAGTGTTTTCGACTTTTGTTACCTAGA 59.989 37.037 0.00 0.00 0.00 2.43
3634 3936 9.204570 TGCTACTTACTCTATTTCAGTGTTTTC 57.795 33.333 0.00 0.00 33.19 2.29
3661 3972 3.750130 AGTTTGCGAGGATGATATCATGC 59.250 43.478 25.15 25.15 43.83 4.06
3662 3973 5.237996 ACAAGTTTGCGAGGATGATATCATG 59.762 40.000 22.86 9.42 36.57 3.07
3663 3974 5.371526 ACAAGTTTGCGAGGATGATATCAT 58.628 37.500 18.21 18.21 39.70 2.45
3664 3975 4.769688 ACAAGTTTGCGAGGATGATATCA 58.230 39.130 8.10 8.10 0.00 2.15
3665 3976 5.741388 AACAAGTTTGCGAGGATGATATC 57.259 39.130 0.00 0.00 0.00 1.63
3666 3977 5.647658 TGAAACAAGTTTGCGAGGATGATAT 59.352 36.000 2.45 0.00 32.11 1.63
3667 3978 5.000591 TGAAACAAGTTTGCGAGGATGATA 58.999 37.500 2.45 0.00 32.11 2.15
3668 3979 3.820467 TGAAACAAGTTTGCGAGGATGAT 59.180 39.130 2.45 0.00 32.11 2.45
3677 3988 9.468532 AGATAGAGAAAAATGAAACAAGTTTGC 57.531 29.630 2.45 0.00 32.11 3.68
3711 4026 1.177256 GCCAGGGACATGATGATGCC 61.177 60.000 0.00 0.00 32.14 4.40
3743 4066 9.817809 GTTCTGTAATTTGGAGTACTATGATGA 57.182 33.333 0.00 0.00 0.00 2.92
3776 4099 6.975772 GCTTCGAAGATCTAGTCATAAGTTGT 59.024 38.462 28.95 0.00 35.04 3.32
3789 4112 6.909550 ATAATGACCTAGCTTCGAAGATCT 57.090 37.500 28.95 18.39 35.04 2.75
3801 4124 6.926630 AAGCTCCTCCTAATAATGACCTAG 57.073 41.667 0.00 0.00 0.00 3.02
3902 4225 5.178096 TCTGGATAAATGAACTCTGCCAA 57.822 39.130 0.00 0.00 0.00 4.52
3965 4288 2.163509 CTCCTCTTCCTCGTTGACAGA 58.836 52.381 0.00 0.00 0.00 3.41
3970 4293 1.889829 ACTCACTCCTCTTCCTCGTTG 59.110 52.381 0.00 0.00 0.00 4.10
3973 4296 2.420722 GTGTACTCACTCCTCTTCCTCG 59.579 54.545 0.00 0.00 40.98 4.63
3975 4298 3.527507 TGTGTACTCACTCCTCTTCCT 57.472 47.619 0.00 0.00 44.14 3.36
4000 4323 5.904941 ACTGATTTGCTTGTCAATTTGTCA 58.095 33.333 0.00 0.00 34.12 3.58
4001 4324 7.809331 TGATACTGATTTGCTTGTCAATTTGTC 59.191 33.333 0.00 0.00 34.12 3.18
4002 4325 7.660112 TGATACTGATTTGCTTGTCAATTTGT 58.340 30.769 0.00 0.00 34.12 2.83
4003 4326 7.201410 GCTGATACTGATTTGCTTGTCAATTTG 60.201 37.037 0.00 0.00 34.12 2.32
4004 4327 6.810182 GCTGATACTGATTTGCTTGTCAATTT 59.190 34.615 0.00 0.00 34.12 1.82
4005 4328 6.327934 GCTGATACTGATTTGCTTGTCAATT 58.672 36.000 0.00 0.00 34.12 2.32
4006 4329 5.448225 CGCTGATACTGATTTGCTTGTCAAT 60.448 40.000 0.00 0.00 34.12 2.57
4007 4330 4.142838 CGCTGATACTGATTTGCTTGTCAA 60.143 41.667 0.00 0.00 0.00 3.18
4030 4353 1.952296 CATGCTCTAAGGGATTGTGCC 59.048 52.381 0.00 0.00 0.00 5.01
4037 4360 9.256228 CTATACTATTAACCATGCTCTAAGGGA 57.744 37.037 0.00 0.00 0.00 4.20
4042 4365 7.363880 GCTGGCTATACTATTAACCATGCTCTA 60.364 40.741 0.00 0.00 0.00 2.43
4047 4370 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
4048 4371 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
4049 4372 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
4084 4407 0.461870 GCCGTAGATGACATGGCACA 60.462 55.000 1.45 0.00 45.06 4.57
4085 4408 2.311294 GCCGTAGATGACATGGCAC 58.689 57.895 1.45 0.00 45.06 5.01
4086 4409 4.855105 GCCGTAGATGACATGGCA 57.145 55.556 2.18 2.18 45.06 4.92
4087 4410 1.598130 GGGCCGTAGATGACATGGC 60.598 63.158 6.05 6.05 44.98 4.40
4088 4411 0.397941 ATGGGCCGTAGATGACATGG 59.602 55.000 0.00 0.00 0.00 3.66
4089 4412 1.345741 AGATGGGCCGTAGATGACATG 59.654 52.381 0.00 0.00 0.00 3.21
4090 4413 1.722034 AGATGGGCCGTAGATGACAT 58.278 50.000 0.00 0.00 0.00 3.06
4091 4414 1.496060 AAGATGGGCCGTAGATGACA 58.504 50.000 0.00 0.00 0.00 3.58
4092 4415 3.963428 ATAAGATGGGCCGTAGATGAC 57.037 47.619 0.00 0.00 0.00 3.06
4093 4416 3.447586 GCTATAAGATGGGCCGTAGATGA 59.552 47.826 0.00 0.00 0.00 2.92
4094 4417 3.430929 GGCTATAAGATGGGCCGTAGATG 60.431 52.174 0.00 0.00 35.08 2.90
4095 4418 2.766828 GGCTATAAGATGGGCCGTAGAT 59.233 50.000 0.00 0.00 35.08 1.98
4096 4419 2.176889 GGCTATAAGATGGGCCGTAGA 58.823 52.381 0.00 0.00 35.08 2.59
4097 4420 1.899814 TGGCTATAAGATGGGCCGTAG 59.100 52.381 0.00 0.00 46.72 3.51
4098 4421 2.018355 TGGCTATAAGATGGGCCGTA 57.982 50.000 0.00 0.00 46.72 4.02
4099 4422 1.136828 TTGGCTATAAGATGGGCCGT 58.863 50.000 0.00 0.00 46.72 5.68
4100 4423 1.202758 TGTTGGCTATAAGATGGGCCG 60.203 52.381 0.00 0.00 46.72 6.13
4101 4424 2.656947 TGTTGGCTATAAGATGGGCC 57.343 50.000 0.00 0.00 44.31 5.80
4102 4425 3.490348 ACATGTTGGCTATAAGATGGGC 58.510 45.455 0.00 0.00 36.09 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.