Multiple sequence alignment - TraesCS3B01G519700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G519700 chr3B 100.000 2546 0 0 1 2546 763221405 763218860 0.000000e+00 4702.0
1 TraesCS3B01G519700 chr3B 85.914 1001 104 22 598 1580 763262182 763263163 0.000000e+00 1033.0
2 TraesCS3B01G519700 chr3D 87.162 1628 167 23 859 2468 573966857 573968460 0.000000e+00 1810.0
3 TraesCS3B01G519700 chr3D 85.687 1062 113 22 602 1653 573871716 573870684 0.000000e+00 1083.0
4 TraesCS3B01G519700 chr3A 90.563 1314 95 14 1250 2546 709111101 709112402 0.000000e+00 1712.0
5 TraesCS3B01G519700 chr3A 86.193 1014 107 21 602 1608 708932675 708931688 0.000000e+00 1066.0
6 TraesCS3B01G519700 chr2D 88.565 446 47 4 1980 2423 110850846 110850403 2.880000e-149 538.0
7 TraesCS3B01G519700 chr1D 83.242 549 87 2 984 1532 423644296 423644839 1.360000e-137 499.0
8 TraesCS3B01G519700 chr1D 84.615 91 11 3 178 266 435366272 435366361 1.250000e-13 87.9
9 TraesCS3B01G519700 chr1D 92.453 53 3 1 1980 2032 239624309 239624360 9.770000e-10 75.0
10 TraesCS3B01G519700 chr1A 82.182 550 96 2 984 1532 519819561 519820109 2.960000e-129 472.0
11 TraesCS3B01G519700 chr1A 81.603 549 101 0 984 1532 520351195 520350647 2.990000e-124 455.0
12 TraesCS3B01G519700 chr1A 81.071 560 106 0 976 1535 520401751 520402310 5.000000e-122 448.0
13 TraesCS3B01G519700 chr1A 80.882 272 41 7 594 857 519819275 519819543 1.190000e-48 204.0
14 TraesCS3B01G519700 chr1A 77.143 280 58 5 598 872 520393899 520394177 9.430000e-35 158.0
15 TraesCS3B01G519700 chr2B 87.097 372 44 4 1967 2335 159982291 159981921 3.920000e-113 418.0
16 TraesCS3B01G519700 chr5A 77.358 159 29 7 1690 1844 641586053 641585898 1.250000e-13 87.9
17 TraesCS3B01G519700 chr2A 76.667 120 25 3 1691 1808 211693464 211693346 2.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G519700 chr3B 763218860 763221405 2545 True 4702 4702 100.000 1 2546 1 chr3B.!!$R1 2545
1 TraesCS3B01G519700 chr3B 763262182 763263163 981 False 1033 1033 85.914 598 1580 1 chr3B.!!$F1 982
2 TraesCS3B01G519700 chr3D 573966857 573968460 1603 False 1810 1810 87.162 859 2468 1 chr3D.!!$F1 1609
3 TraesCS3B01G519700 chr3D 573870684 573871716 1032 True 1083 1083 85.687 602 1653 1 chr3D.!!$R1 1051
4 TraesCS3B01G519700 chr3A 709111101 709112402 1301 False 1712 1712 90.563 1250 2546 1 chr3A.!!$F1 1296
5 TraesCS3B01G519700 chr3A 708931688 708932675 987 True 1066 1066 86.193 602 1608 1 chr3A.!!$R1 1006
6 TraesCS3B01G519700 chr1D 423644296 423644839 543 False 499 499 83.242 984 1532 1 chr1D.!!$F2 548
7 TraesCS3B01G519700 chr1A 520350647 520351195 548 True 455 455 81.603 984 1532 1 chr1A.!!$R1 548
8 TraesCS3B01G519700 chr1A 520401751 520402310 559 False 448 448 81.071 976 1535 1 chr1A.!!$F2 559
9 TraesCS3B01G519700 chr1A 519819275 519820109 834 False 338 472 81.532 594 1532 2 chr1A.!!$F3 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 759 0.396811 CCTCGAAGGGTTTGGACACT 59.603 55.0 0.0 0.0 42.76 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2431 0.034059 AGCAACAGGTCTTCAGGTCG 59.966 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.596836 TTTTTCCACACAAGAGAGCATTT 57.403 34.783 0.00 0.00 0.00 2.32
45 46 4.572985 TTTCCACACAAGAGAGCATTTG 57.427 40.909 0.00 0.00 0.00 2.32
46 47 3.490439 TCCACACAAGAGAGCATTTGA 57.510 42.857 0.00 0.00 0.00 2.69
47 48 3.141398 TCCACACAAGAGAGCATTTGAC 58.859 45.455 0.00 0.00 0.00 3.18
48 49 2.227388 CCACACAAGAGAGCATTTGACC 59.773 50.000 0.00 0.00 0.00 4.02
49 50 3.144506 CACACAAGAGAGCATTTGACCT 58.855 45.455 0.00 0.00 0.00 3.85
50 51 3.567164 CACACAAGAGAGCATTTGACCTT 59.433 43.478 0.00 0.00 0.00 3.50
51 52 3.567164 ACACAAGAGAGCATTTGACCTTG 59.433 43.478 0.00 0.00 37.57 3.61
52 53 3.817084 CACAAGAGAGCATTTGACCTTGA 59.183 43.478 0.00 0.00 36.03 3.02
53 54 4.276678 CACAAGAGAGCATTTGACCTTGAA 59.723 41.667 0.00 0.00 36.03 2.69
54 55 5.048224 CACAAGAGAGCATTTGACCTTGAAT 60.048 40.000 0.00 0.00 36.03 2.57
55 56 5.182760 ACAAGAGAGCATTTGACCTTGAATC 59.817 40.000 0.00 0.00 36.03 2.52
56 57 5.176741 AGAGAGCATTTGACCTTGAATCT 57.823 39.130 0.00 0.00 0.00 2.40
57 58 5.568392 AGAGAGCATTTGACCTTGAATCTT 58.432 37.500 0.00 0.00 0.00 2.40
58 59 6.715280 AGAGAGCATTTGACCTTGAATCTTA 58.285 36.000 0.00 0.00 0.00 2.10
59 60 7.344913 AGAGAGCATTTGACCTTGAATCTTAT 58.655 34.615 0.00 0.00 0.00 1.73
60 61 7.498570 AGAGAGCATTTGACCTTGAATCTTATC 59.501 37.037 0.00 0.00 0.00 1.75
61 62 7.114754 AGAGCATTTGACCTTGAATCTTATCA 58.885 34.615 0.00 0.00 0.00 2.15
62 63 7.282675 AGAGCATTTGACCTTGAATCTTATCAG 59.717 37.037 0.00 0.00 0.00 2.90
63 64 6.320672 AGCATTTGACCTTGAATCTTATCAGG 59.679 38.462 0.00 0.00 0.00 3.86
64 65 6.096001 GCATTTGACCTTGAATCTTATCAGGT 59.904 38.462 0.00 0.00 35.17 4.00
65 66 7.680588 GCATTTGACCTTGAATCTTATCAGGTC 60.681 40.741 9.33 9.33 42.13 3.85
66 67 6.373005 TTGACCTTGAATCTTATCAGGTCA 57.627 37.500 14.06 14.06 45.40 4.02
67 68 6.373005 TGACCTTGAATCTTATCAGGTCAA 57.627 37.500 15.40 1.83 44.84 3.18
68 69 6.173339 TGACCTTGAATCTTATCAGGTCAAC 58.827 40.000 15.40 0.00 44.84 3.18
69 70 6.013379 TGACCTTGAATCTTATCAGGTCAACT 60.013 38.462 15.40 0.00 44.84 3.16
70 71 7.180229 TGACCTTGAATCTTATCAGGTCAACTA 59.820 37.037 15.40 0.00 44.84 2.24
71 72 8.095452 ACCTTGAATCTTATCAGGTCAACTAT 57.905 34.615 0.00 0.00 30.15 2.12
72 73 9.213777 ACCTTGAATCTTATCAGGTCAACTATA 57.786 33.333 0.00 0.00 30.15 1.31
73 74 9.482627 CCTTGAATCTTATCAGGTCAACTATAC 57.517 37.037 0.00 0.00 0.00 1.47
83 84 7.727578 TCAGGTCAACTATACATAAGTTCCA 57.272 36.000 0.00 0.00 34.99 3.53
84 85 7.553334 TCAGGTCAACTATACATAAGTTCCAC 58.447 38.462 0.00 0.00 34.99 4.02
85 86 7.399191 TCAGGTCAACTATACATAAGTTCCACT 59.601 37.037 0.00 0.00 34.99 4.00
86 87 7.707035 CAGGTCAACTATACATAAGTTCCACTC 59.293 40.741 0.00 0.00 34.99 3.51
87 88 7.620094 AGGTCAACTATACATAAGTTCCACTCT 59.380 37.037 0.00 0.00 34.99 3.24
88 89 8.258708 GGTCAACTATACATAAGTTCCACTCTT 58.741 37.037 0.00 0.00 34.99 2.85
89 90 9.654663 GTCAACTATACATAAGTTCCACTCTTT 57.345 33.333 0.00 0.00 34.99 2.52
90 91 9.653287 TCAACTATACATAAGTTCCACTCTTTG 57.347 33.333 0.00 0.00 34.99 2.77
91 92 9.436957 CAACTATACATAAGTTCCACTCTTTGT 57.563 33.333 0.00 0.00 34.99 2.83
104 105 9.406828 GTTCCACTCTTTGTATAAAATGTTTCC 57.593 33.333 0.00 0.00 0.00 3.13
105 106 8.698973 TCCACTCTTTGTATAAAATGTTTCCA 57.301 30.769 0.00 0.00 0.00 3.53
106 107 9.137459 TCCACTCTTTGTATAAAATGTTTCCAA 57.863 29.630 0.00 0.00 0.00 3.53
107 108 9.757227 CCACTCTTTGTATAAAATGTTTCCAAA 57.243 29.630 0.00 0.00 0.00 3.28
124 125 9.500785 TGTTTCCAAAATTTCTTTCAAAGTTCT 57.499 25.926 0.00 0.00 0.00 3.01
162 163 9.334947 TCATTTTTCAAAATTTCTATTGCACCA 57.665 25.926 0.00 0.00 36.52 4.17
163 164 9.947669 CATTTTTCAAAATTTCTATTGCACCAA 57.052 25.926 0.00 0.00 36.52 3.67
200 201 8.848474 AAAACATTTCTGCACATAGTAGTACT 57.152 30.769 8.14 8.14 0.00 2.73
201 202 8.848474 AAACATTTCTGCACATAGTAGTACTT 57.152 30.769 8.40 0.00 0.00 2.24
202 203 7.834068 ACATTTCTGCACATAGTAGTACTTG 57.166 36.000 8.40 9.13 0.00 3.16
203 204 7.386851 ACATTTCTGCACATAGTAGTACTTGT 58.613 34.615 8.40 9.73 0.00 3.16
204 205 7.331934 ACATTTCTGCACATAGTAGTACTTGTG 59.668 37.037 25.45 25.45 38.76 3.33
205 206 5.977489 TCTGCACATAGTAGTACTTGTGT 57.023 39.130 27.57 21.30 38.39 3.72
206 207 5.709966 TCTGCACATAGTAGTACTTGTGTG 58.290 41.667 27.56 27.56 41.95 3.82
207 208 5.475564 TCTGCACATAGTAGTACTTGTGTGA 59.524 40.000 31.86 26.02 41.78 3.58
208 209 6.152831 TCTGCACATAGTAGTACTTGTGTGAT 59.847 38.462 31.86 11.93 41.78 3.06
209 210 6.099341 TGCACATAGTAGTACTTGTGTGATG 58.901 40.000 31.86 21.32 41.78 3.07
210 211 6.100004 GCACATAGTAGTACTTGTGTGATGT 58.900 40.000 31.86 21.79 41.78 3.06
211 212 6.590292 GCACATAGTAGTACTTGTGTGATGTT 59.410 38.462 31.86 11.90 41.78 2.71
212 213 7.411912 GCACATAGTAGTACTTGTGTGATGTTG 60.412 40.741 31.86 19.32 41.78 3.33
213 214 7.598869 CACATAGTAGTACTTGTGTGATGTTGT 59.401 37.037 27.74 5.50 41.78 3.32
214 215 8.148351 ACATAGTAGTACTTGTGTGATGTTGTT 58.852 33.333 8.40 0.00 28.93 2.83
215 216 8.648097 CATAGTAGTACTTGTGTGATGTTGTTC 58.352 37.037 8.40 0.00 0.00 3.18
216 217 6.817184 AGTAGTACTTGTGTGATGTTGTTCT 58.183 36.000 0.00 0.00 0.00 3.01
217 218 5.991328 AGTACTTGTGTGATGTTGTTCTG 57.009 39.130 0.00 0.00 0.00 3.02
218 219 3.698029 ACTTGTGTGATGTTGTTCTGC 57.302 42.857 0.00 0.00 0.00 4.26
219 220 3.016031 ACTTGTGTGATGTTGTTCTGCA 58.984 40.909 0.00 0.00 0.00 4.41
220 221 3.443329 ACTTGTGTGATGTTGTTCTGCAA 59.557 39.130 0.00 0.00 34.16 4.08
221 222 4.082300 ACTTGTGTGATGTTGTTCTGCAAA 60.082 37.500 0.00 0.00 39.03 3.68
222 223 4.031418 TGTGTGATGTTGTTCTGCAAAG 57.969 40.909 0.00 0.00 39.03 2.77
223 224 3.443329 TGTGTGATGTTGTTCTGCAAAGT 59.557 39.130 0.00 0.00 39.03 2.66
224 225 4.082300 TGTGTGATGTTGTTCTGCAAAGTT 60.082 37.500 0.00 0.00 39.03 2.66
225 226 4.864247 GTGTGATGTTGTTCTGCAAAGTTT 59.136 37.500 0.00 0.00 39.03 2.66
226 227 5.004726 GTGTGATGTTGTTCTGCAAAGTTTC 59.995 40.000 0.00 0.00 39.03 2.78
227 228 4.204978 GTGATGTTGTTCTGCAAAGTTTCG 59.795 41.667 0.00 0.00 39.03 3.46
228 229 4.095632 TGATGTTGTTCTGCAAAGTTTCGA 59.904 37.500 0.00 0.00 39.03 3.71
229 230 4.014847 TGTTGTTCTGCAAAGTTTCGAG 57.985 40.909 0.00 0.00 39.03 4.04
230 231 3.438781 TGTTGTTCTGCAAAGTTTCGAGT 59.561 39.130 0.00 0.00 39.03 4.18
231 232 4.083003 TGTTGTTCTGCAAAGTTTCGAGTT 60.083 37.500 0.00 0.00 39.03 3.01
232 233 4.273005 TGTTCTGCAAAGTTTCGAGTTC 57.727 40.909 0.00 0.00 0.00 3.01
233 234 3.687212 TGTTCTGCAAAGTTTCGAGTTCA 59.313 39.130 0.00 0.00 0.00 3.18
234 235 4.201812 TGTTCTGCAAAGTTTCGAGTTCAG 60.202 41.667 0.00 0.00 0.00 3.02
235 236 3.531538 TCTGCAAAGTTTCGAGTTCAGT 58.468 40.909 0.00 0.00 0.00 3.41
236 237 3.938963 TCTGCAAAGTTTCGAGTTCAGTT 59.061 39.130 0.00 0.00 0.00 3.16
237 238 4.014847 TGCAAAGTTTCGAGTTCAGTTG 57.985 40.909 0.00 0.00 0.00 3.16
238 239 3.438781 TGCAAAGTTTCGAGTTCAGTTGT 59.561 39.130 0.00 0.00 0.00 3.32
239 240 4.083003 TGCAAAGTTTCGAGTTCAGTTGTT 60.083 37.500 0.00 0.00 0.00 2.83
240 241 4.495828 GCAAAGTTTCGAGTTCAGTTGTTC 59.504 41.667 0.00 0.00 0.00 3.18
241 242 5.673818 GCAAAGTTTCGAGTTCAGTTGTTCT 60.674 40.000 0.00 0.00 0.00 3.01
242 243 6.314784 CAAAGTTTCGAGTTCAGTTGTTCTT 58.685 36.000 0.00 0.00 0.00 2.52
243 244 6.496338 AAGTTTCGAGTTCAGTTGTTCTTT 57.504 33.333 0.00 0.00 0.00 2.52
244 245 6.496338 AGTTTCGAGTTCAGTTGTTCTTTT 57.504 33.333 0.00 0.00 0.00 2.27
245 246 6.909909 AGTTTCGAGTTCAGTTGTTCTTTTT 58.090 32.000 0.00 0.00 0.00 1.94
278 279 2.452600 AAAAGAGGAGTTTGGCCACA 57.547 45.000 3.88 0.00 0.00 4.17
279 280 1.692411 AAAGAGGAGTTTGGCCACAC 58.308 50.000 14.44 14.44 0.00 3.82
280 281 0.550914 AAGAGGAGTTTGGCCACACA 59.449 50.000 23.55 0.00 0.00 3.72
281 282 0.550914 AGAGGAGTTTGGCCACACAA 59.449 50.000 23.55 4.34 0.00 3.33
282 283 0.954452 GAGGAGTTTGGCCACACAAG 59.046 55.000 23.55 0.00 0.00 3.16
283 284 1.109323 AGGAGTTTGGCCACACAAGC 61.109 55.000 23.55 12.04 32.55 4.01
284 285 1.391157 GGAGTTTGGCCACACAAGCA 61.391 55.000 23.55 0.00 34.50 3.91
285 286 0.675633 GAGTTTGGCCACACAAGCAT 59.324 50.000 23.55 2.44 34.50 3.79
286 287 1.069049 GAGTTTGGCCACACAAGCATT 59.931 47.619 23.55 1.66 34.50 3.56
307 308 7.736031 CATTGATGCACAAATGAACTCTAAG 57.264 36.000 15.06 0.00 42.03 2.18
308 309 5.885230 TGATGCACAAATGAACTCTAAGG 57.115 39.130 0.00 0.00 0.00 2.69
309 310 5.559770 TGATGCACAAATGAACTCTAAGGA 58.440 37.500 0.00 0.00 0.00 3.36
310 311 6.182627 TGATGCACAAATGAACTCTAAGGAT 58.817 36.000 0.00 0.00 0.00 3.24
311 312 7.337938 TGATGCACAAATGAACTCTAAGGATA 58.662 34.615 0.00 0.00 0.00 2.59
312 313 7.496920 TGATGCACAAATGAACTCTAAGGATAG 59.503 37.037 0.00 0.00 0.00 2.08
313 314 6.946340 TGCACAAATGAACTCTAAGGATAGA 58.054 36.000 0.00 0.00 36.70 1.98
314 315 7.568349 TGCACAAATGAACTCTAAGGATAGAT 58.432 34.615 0.00 0.00 37.52 1.98
315 316 8.049117 TGCACAAATGAACTCTAAGGATAGATT 58.951 33.333 0.00 0.00 37.52 2.40
316 317 8.341173 GCACAAATGAACTCTAAGGATAGATTG 58.659 37.037 0.00 0.00 37.52 2.67
317 318 9.388506 CACAAATGAACTCTAAGGATAGATTGT 57.611 33.333 0.00 0.00 37.52 2.71
325 326 9.884814 AACTCTAAGGATAGATTGTATAGTGGT 57.115 33.333 0.00 0.00 37.52 4.16
330 331 8.671987 AAGGATAGATTGTATAGTGGTATGCT 57.328 34.615 0.00 0.00 0.00 3.79
331 332 9.769677 AAGGATAGATTGTATAGTGGTATGCTA 57.230 33.333 0.00 0.00 0.00 3.49
332 333 9.415008 AGGATAGATTGTATAGTGGTATGCTAG 57.585 37.037 0.00 0.00 0.00 3.42
333 334 9.191479 GGATAGATTGTATAGTGGTATGCTAGT 57.809 37.037 0.00 0.00 0.00 2.57
336 337 8.935614 AGATTGTATAGTGGTATGCTAGTACA 57.064 34.615 0.00 0.00 0.00 2.90
337 338 9.363401 AGATTGTATAGTGGTATGCTAGTACAA 57.637 33.333 0.00 0.00 35.89 2.41
340 341 8.700439 TGTATAGTGGTATGCTAGTACAATCA 57.300 34.615 0.00 0.00 0.00 2.57
341 342 8.573885 TGTATAGTGGTATGCTAGTACAATCAC 58.426 37.037 0.00 1.48 0.00 3.06
342 343 5.932619 AGTGGTATGCTAGTACAATCACA 57.067 39.130 9.94 0.00 0.00 3.58
343 344 6.294361 AGTGGTATGCTAGTACAATCACAA 57.706 37.500 9.94 0.00 0.00 3.33
344 345 6.106673 AGTGGTATGCTAGTACAATCACAAC 58.893 40.000 9.94 0.00 0.00 3.32
345 346 6.070767 AGTGGTATGCTAGTACAATCACAACT 60.071 38.462 9.94 0.00 0.00 3.16
346 347 6.594159 GTGGTATGCTAGTACAATCACAACTT 59.406 38.462 0.00 0.00 0.00 2.66
347 348 7.119262 GTGGTATGCTAGTACAATCACAACTTT 59.881 37.037 0.00 0.00 0.00 2.66
348 349 7.333423 TGGTATGCTAGTACAATCACAACTTTC 59.667 37.037 0.00 0.00 0.00 2.62
349 350 6.743575 ATGCTAGTACAATCACAACTTTCC 57.256 37.500 0.00 0.00 0.00 3.13
350 351 5.001232 TGCTAGTACAATCACAACTTTCCC 58.999 41.667 0.00 0.00 0.00 3.97
351 352 5.001232 GCTAGTACAATCACAACTTTCCCA 58.999 41.667 0.00 0.00 0.00 4.37
352 353 5.472137 GCTAGTACAATCACAACTTTCCCAA 59.528 40.000 0.00 0.00 0.00 4.12
353 354 6.151144 GCTAGTACAATCACAACTTTCCCAAT 59.849 38.462 0.00 0.00 0.00 3.16
354 355 6.331369 AGTACAATCACAACTTTCCCAATG 57.669 37.500 0.00 0.00 0.00 2.82
355 356 6.068010 AGTACAATCACAACTTTCCCAATGA 58.932 36.000 0.00 0.00 0.00 2.57
356 357 6.721208 AGTACAATCACAACTTTCCCAATGAT 59.279 34.615 0.00 0.00 0.00 2.45
357 358 5.786311 ACAATCACAACTTTCCCAATGATG 58.214 37.500 0.00 0.00 0.00 3.07
358 359 5.539574 ACAATCACAACTTTCCCAATGATGA 59.460 36.000 0.00 0.00 0.00 2.92
359 360 6.041865 ACAATCACAACTTTCCCAATGATGAA 59.958 34.615 0.00 0.00 0.00 2.57
360 361 6.669125 ATCACAACTTTCCCAATGATGAAA 57.331 33.333 0.00 0.00 0.00 2.69
361 362 6.477053 TCACAACTTTCCCAATGATGAAAA 57.523 33.333 1.00 0.00 30.65 2.29
362 363 6.882656 TCACAACTTTCCCAATGATGAAAAA 58.117 32.000 1.00 0.00 30.65 1.94
363 364 6.760770 TCACAACTTTCCCAATGATGAAAAAC 59.239 34.615 1.00 0.00 30.65 2.43
364 365 6.538021 CACAACTTTCCCAATGATGAAAAACA 59.462 34.615 1.00 0.00 30.65 2.83
365 366 7.227116 CACAACTTTCCCAATGATGAAAAACAT 59.773 33.333 0.00 0.00 42.47 2.71
366 367 7.774625 ACAACTTTCCCAATGATGAAAAACATT 59.225 29.630 0.00 0.00 39.56 2.71
367 368 9.270640 CAACTTTCCCAATGATGAAAAACATTA 57.729 29.630 0.00 0.00 39.56 1.90
368 369 9.844257 AACTTTCCCAATGATGAAAAACATTAA 57.156 25.926 0.00 0.00 39.56 1.40
369 370 9.844257 ACTTTCCCAATGATGAAAAACATTAAA 57.156 25.926 0.00 0.00 39.56 1.52
392 393 8.672214 AAAAATTTGTTTGACTGAAATGCAAC 57.328 26.923 0.00 0.00 0.00 4.17
393 394 6.981762 AATTTGTTTGACTGAAATGCAACA 57.018 29.167 0.00 0.00 0.00 3.33
394 395 7.556733 AATTTGTTTGACTGAAATGCAACAT 57.443 28.000 0.00 0.00 0.00 2.71
395 396 5.970140 TTGTTTGACTGAAATGCAACATG 57.030 34.783 0.00 0.00 0.00 3.21
396 397 5.259832 TGTTTGACTGAAATGCAACATGA 57.740 34.783 0.00 0.00 0.00 3.07
397 398 5.658468 TGTTTGACTGAAATGCAACATGAA 58.342 33.333 0.00 0.00 0.00 2.57
398 399 6.282167 TGTTTGACTGAAATGCAACATGAAT 58.718 32.000 0.00 0.00 0.00 2.57
399 400 6.762187 TGTTTGACTGAAATGCAACATGAATT 59.238 30.769 0.00 0.00 0.00 2.17
400 401 7.042590 TGTTTGACTGAAATGCAACATGAATTC 60.043 33.333 0.00 0.00 0.00 2.17
401 402 6.335471 TGACTGAAATGCAACATGAATTCT 57.665 33.333 7.05 0.00 0.00 2.40
402 403 7.451501 TGACTGAAATGCAACATGAATTCTA 57.548 32.000 7.05 0.00 0.00 2.10
403 404 7.532571 TGACTGAAATGCAACATGAATTCTAG 58.467 34.615 7.05 1.67 0.00 2.43
404 405 6.860080 ACTGAAATGCAACATGAATTCTAGG 58.140 36.000 7.05 0.00 0.00 3.02
405 406 6.660521 ACTGAAATGCAACATGAATTCTAGGA 59.339 34.615 7.05 0.00 0.00 2.94
406 407 7.177216 ACTGAAATGCAACATGAATTCTAGGAA 59.823 33.333 7.05 0.00 0.00 3.36
407 408 7.894708 TGAAATGCAACATGAATTCTAGGAAA 58.105 30.769 7.05 0.00 0.00 3.13
408 409 7.814107 TGAAATGCAACATGAATTCTAGGAAAC 59.186 33.333 7.05 0.00 0.00 2.78
410 411 6.899393 TGCAACATGAATTCTAGGAAACTT 57.101 33.333 7.05 0.00 43.67 2.66
411 412 6.680810 TGCAACATGAATTCTAGGAAACTTG 58.319 36.000 7.05 1.45 43.67 3.16
412 413 6.095377 GCAACATGAATTCTAGGAAACTTGG 58.905 40.000 7.05 0.00 43.67 3.61
413 414 5.904362 ACATGAATTCTAGGAAACTTGGC 57.096 39.130 7.05 0.00 43.67 4.52
414 415 4.396166 ACATGAATTCTAGGAAACTTGGCG 59.604 41.667 7.05 0.00 43.67 5.69
415 416 4.015872 TGAATTCTAGGAAACTTGGCGT 57.984 40.909 7.05 0.00 43.67 5.68
416 417 5.155278 TGAATTCTAGGAAACTTGGCGTA 57.845 39.130 7.05 0.00 43.67 4.42
417 418 5.553123 TGAATTCTAGGAAACTTGGCGTAA 58.447 37.500 7.05 0.00 43.67 3.18
418 419 5.642063 TGAATTCTAGGAAACTTGGCGTAAG 59.358 40.000 7.05 0.85 43.67 2.34
428 429 3.920112 CTTGGCGTAAGTTTCGGTATC 57.080 47.619 4.01 0.00 41.68 2.24
429 430 2.298411 TGGCGTAAGTTTCGGTATCC 57.702 50.000 4.01 0.00 41.68 2.59
430 431 1.826720 TGGCGTAAGTTTCGGTATCCT 59.173 47.619 4.01 0.00 41.68 3.24
431 432 2.234414 TGGCGTAAGTTTCGGTATCCTT 59.766 45.455 4.01 0.00 41.68 3.36
432 433 3.264947 GGCGTAAGTTTCGGTATCCTTT 58.735 45.455 4.01 0.00 41.68 3.11
433 434 4.081752 TGGCGTAAGTTTCGGTATCCTTTA 60.082 41.667 4.01 0.00 41.68 1.85
434 435 5.052481 GGCGTAAGTTTCGGTATCCTTTAT 58.948 41.667 4.01 0.00 41.68 1.40
435 436 5.525012 GGCGTAAGTTTCGGTATCCTTTATT 59.475 40.000 4.01 0.00 41.68 1.40
436 437 6.292542 GGCGTAAGTTTCGGTATCCTTTATTC 60.293 42.308 4.01 0.00 41.68 1.75
437 438 6.256321 GCGTAAGTTTCGGTATCCTTTATTCA 59.744 38.462 4.01 0.00 41.68 2.57
438 439 7.516312 GCGTAAGTTTCGGTATCCTTTATTCAG 60.516 40.741 4.01 0.00 41.68 3.02
439 440 6.679327 AAGTTTCGGTATCCTTTATTCAGC 57.321 37.500 0.00 0.00 0.00 4.26
440 441 5.990668 AGTTTCGGTATCCTTTATTCAGCT 58.009 37.500 0.00 0.00 0.00 4.24
441 442 6.049790 AGTTTCGGTATCCTTTATTCAGCTC 58.950 40.000 0.00 0.00 0.00 4.09
442 443 4.602340 TCGGTATCCTTTATTCAGCTCC 57.398 45.455 0.00 0.00 0.00 4.70
443 444 3.964688 TCGGTATCCTTTATTCAGCTCCA 59.035 43.478 0.00 0.00 0.00 3.86
444 445 4.407621 TCGGTATCCTTTATTCAGCTCCAA 59.592 41.667 0.00 0.00 0.00 3.53
445 446 4.752101 CGGTATCCTTTATTCAGCTCCAAG 59.248 45.833 0.00 0.00 0.00 3.61
446 447 5.685075 CGGTATCCTTTATTCAGCTCCAAGT 60.685 44.000 0.00 0.00 0.00 3.16
447 448 5.760743 GGTATCCTTTATTCAGCTCCAAGTC 59.239 44.000 0.00 0.00 0.00 3.01
448 449 4.908601 TCCTTTATTCAGCTCCAAGTCA 57.091 40.909 0.00 0.00 0.00 3.41
449 450 5.441718 TCCTTTATTCAGCTCCAAGTCAT 57.558 39.130 0.00 0.00 0.00 3.06
450 451 5.188434 TCCTTTATTCAGCTCCAAGTCATG 58.812 41.667 0.00 0.00 0.00 3.07
451 452 4.946157 CCTTTATTCAGCTCCAAGTCATGT 59.054 41.667 0.00 0.00 0.00 3.21
452 453 5.163683 CCTTTATTCAGCTCCAAGTCATGTG 60.164 44.000 0.00 0.00 0.00 3.21
453 454 2.189594 TTCAGCTCCAAGTCATGTGG 57.810 50.000 0.00 0.00 37.51 4.17
454 455 1.059098 TCAGCTCCAAGTCATGTGGT 58.941 50.000 1.12 0.00 37.43 4.16
455 456 2.256306 TCAGCTCCAAGTCATGTGGTA 58.744 47.619 1.12 0.00 37.43 3.25
456 457 2.234661 TCAGCTCCAAGTCATGTGGTAG 59.765 50.000 1.12 0.10 37.43 3.18
457 458 2.234661 CAGCTCCAAGTCATGTGGTAGA 59.765 50.000 1.12 0.00 37.43 2.59
458 459 2.499289 AGCTCCAAGTCATGTGGTAGAG 59.501 50.000 1.12 1.60 37.43 2.43
459 460 2.497675 GCTCCAAGTCATGTGGTAGAGA 59.502 50.000 1.12 0.00 37.43 3.10
460 461 3.055819 GCTCCAAGTCATGTGGTAGAGAA 60.056 47.826 1.12 0.00 37.43 2.87
461 462 4.563580 GCTCCAAGTCATGTGGTAGAGAAA 60.564 45.833 1.12 0.00 37.43 2.52
462 463 5.738909 CTCCAAGTCATGTGGTAGAGAAAT 58.261 41.667 1.12 0.00 37.43 2.17
463 464 6.630413 GCTCCAAGTCATGTGGTAGAGAAATA 60.630 42.308 1.12 0.00 37.43 1.40
464 465 7.437713 TCCAAGTCATGTGGTAGAGAAATAT 57.562 36.000 1.12 0.00 37.43 1.28
465 466 7.861629 TCCAAGTCATGTGGTAGAGAAATATT 58.138 34.615 1.12 0.00 37.43 1.28
466 467 8.328758 TCCAAGTCATGTGGTAGAGAAATATTT 58.671 33.333 0.00 0.00 37.43 1.40
467 468 8.960591 CCAAGTCATGTGGTAGAGAAATATTTT 58.039 33.333 1.43 0.00 0.00 1.82
468 469 9.778993 CAAGTCATGTGGTAGAGAAATATTTTG 57.221 33.333 1.43 0.00 0.00 2.44
469 470 9.739276 AAGTCATGTGGTAGAGAAATATTTTGA 57.261 29.630 1.43 0.00 0.00 2.69
470 471 9.167311 AGTCATGTGGTAGAGAAATATTTTGAC 57.833 33.333 1.43 7.93 0.00 3.18
471 472 8.946085 GTCATGTGGTAGAGAAATATTTTGACA 58.054 33.333 13.52 6.13 0.00 3.58
472 473 9.513906 TCATGTGGTAGAGAAATATTTTGACAA 57.486 29.630 1.43 0.00 0.00 3.18
473 474 9.778993 CATGTGGTAGAGAAATATTTTGACAAG 57.221 33.333 1.43 0.00 0.00 3.16
474 475 9.739276 ATGTGGTAGAGAAATATTTTGACAAGA 57.261 29.630 1.43 0.00 0.00 3.02
475 476 9.567776 TGTGGTAGAGAAATATTTTGACAAGAA 57.432 29.630 1.43 0.00 0.00 2.52
517 518 7.934855 ATCTAATATCCTGCTAAAATGGCTG 57.065 36.000 0.00 0.00 0.00 4.85
518 519 7.078249 TCTAATATCCTGCTAAAATGGCTGA 57.922 36.000 0.00 0.00 0.00 4.26
519 520 7.693132 TCTAATATCCTGCTAAAATGGCTGAT 58.307 34.615 0.00 0.00 0.00 2.90
520 521 8.166061 TCTAATATCCTGCTAAAATGGCTGATT 58.834 33.333 0.00 0.00 0.00 2.57
521 522 7.607615 AATATCCTGCTAAAATGGCTGATTT 57.392 32.000 0.00 0.00 35.65 2.17
522 523 5.945144 ATCCTGCTAAAATGGCTGATTTT 57.055 34.783 10.51 10.51 44.77 1.82
523 524 5.743636 TCCTGCTAAAATGGCTGATTTTT 57.256 34.783 10.82 3.16 40.73 1.94
546 547 7.912056 TTTTCAATGTTGTGGTGAAATTTCA 57.088 28.000 16.91 16.91 40.08 2.69
547 548 8.503458 TTTTCAATGTTGTGGTGAAATTTCAT 57.497 26.923 23.05 2.60 40.08 2.57
548 549 7.712264 TTCAATGTTGTGGTGAAATTTCATC 57.288 32.000 23.05 22.59 39.73 2.92
549 550 5.919707 TCAATGTTGTGGTGAAATTTCATCG 59.080 36.000 23.05 8.04 41.19 3.84
550 551 5.703978 ATGTTGTGGTGAAATTTCATCGA 57.296 34.783 23.05 10.99 41.19 3.59
551 552 5.506686 TGTTGTGGTGAAATTTCATCGAA 57.493 34.783 23.05 15.87 41.19 3.71
552 553 5.277825 TGTTGTGGTGAAATTTCATCGAAC 58.722 37.500 25.34 25.34 41.19 3.95
553 554 5.163612 TGTTGTGGTGAAATTTCATCGAACA 60.164 36.000 28.25 28.25 41.19 3.18
554 555 5.703978 TGTGGTGAAATTTCATCGAACAT 57.296 34.783 23.05 0.00 41.19 2.71
555 556 6.809630 TGTGGTGAAATTTCATCGAACATA 57.190 33.333 23.05 12.61 41.19 2.29
556 557 7.389803 TGTGGTGAAATTTCATCGAACATAT 57.610 32.000 23.05 0.00 41.19 1.78
557 558 7.471721 TGTGGTGAAATTTCATCGAACATATC 58.528 34.615 23.05 6.83 41.19 1.63
558 559 6.912591 GTGGTGAAATTTCATCGAACATATCC 59.087 38.462 23.05 15.17 41.19 2.59
559 560 6.601217 TGGTGAAATTTCATCGAACATATCCA 59.399 34.615 23.05 17.32 41.19 3.41
560 561 7.121907 TGGTGAAATTTCATCGAACATATCCAA 59.878 33.333 23.05 0.23 41.19 3.53
561 562 7.973388 GGTGAAATTTCATCGAACATATCCAAA 59.027 33.333 23.05 0.00 39.73 3.28
562 563 9.352784 GTGAAATTTCATCGAACATATCCAAAA 57.647 29.630 23.05 0.00 39.73 2.44
563 564 9.571810 TGAAATTTCATCGAACATATCCAAAAG 57.428 29.630 16.91 0.00 31.01 2.27
564 565 9.573133 GAAATTTCATCGAACATATCCAAAAGT 57.427 29.630 13.40 0.00 0.00 2.66
567 568 8.554835 TTTCATCGAACATATCCAAAAGTACA 57.445 30.769 0.00 0.00 0.00 2.90
568 569 8.731275 TTCATCGAACATATCCAAAAGTACAT 57.269 30.769 0.00 0.00 0.00 2.29
569 570 8.731275 TCATCGAACATATCCAAAAGTACATT 57.269 30.769 0.00 0.00 0.00 2.71
570 571 8.611757 TCATCGAACATATCCAAAAGTACATTG 58.388 33.333 0.00 0.00 0.00 2.82
571 572 7.915293 TCGAACATATCCAAAAGTACATTGT 57.085 32.000 9.65 0.00 0.00 2.71
572 573 8.330466 TCGAACATATCCAAAAGTACATTGTT 57.670 30.769 0.00 0.00 0.00 2.83
573 574 8.233868 TCGAACATATCCAAAAGTACATTGTTG 58.766 33.333 0.00 2.06 0.00 3.33
574 575 8.233868 CGAACATATCCAAAAGTACATTGTTGA 58.766 33.333 0.00 3.05 0.00 3.18
577 578 9.241919 ACATATCCAAAAGTACATTGTTGATCA 57.758 29.630 0.00 0.00 0.00 2.92
578 579 9.726232 CATATCCAAAAGTACATTGTTGATCAG 57.274 33.333 0.00 0.00 0.00 2.90
579 580 7.765695 ATCCAAAAGTACATTGTTGATCAGT 57.234 32.000 0.00 0.00 0.00 3.41
580 581 7.202016 TCCAAAAGTACATTGTTGATCAGTC 57.798 36.000 0.00 0.00 0.00 3.51
581 582 6.998074 TCCAAAAGTACATTGTTGATCAGTCT 59.002 34.615 0.00 0.00 0.00 3.24
582 583 7.173218 TCCAAAAGTACATTGTTGATCAGTCTC 59.827 37.037 0.00 0.00 0.00 3.36
583 584 7.301054 CAAAAGTACATTGTTGATCAGTCTCC 58.699 38.462 0.00 0.00 0.00 3.71
584 585 4.748892 AGTACATTGTTGATCAGTCTCCG 58.251 43.478 0.00 0.00 0.00 4.63
585 586 2.977914 ACATTGTTGATCAGTCTCCGG 58.022 47.619 0.00 0.00 0.00 5.14
586 587 2.283298 CATTGTTGATCAGTCTCCGGG 58.717 52.381 0.00 0.00 0.00 5.73
587 588 1.639722 TTGTTGATCAGTCTCCGGGA 58.360 50.000 0.00 0.00 0.00 5.14
588 589 1.866015 TGTTGATCAGTCTCCGGGAT 58.134 50.000 0.00 0.00 0.00 3.85
589 590 2.187958 TGTTGATCAGTCTCCGGGATT 58.812 47.619 0.00 0.00 0.00 3.01
590 591 3.371034 TGTTGATCAGTCTCCGGGATTA 58.629 45.455 0.00 0.00 0.00 1.75
591 592 3.967326 TGTTGATCAGTCTCCGGGATTAT 59.033 43.478 0.00 0.00 0.00 1.28
592 593 4.039245 TGTTGATCAGTCTCCGGGATTATC 59.961 45.833 0.00 3.87 0.00 1.75
596 597 6.256819 TGATCAGTCTCCGGGATTATCTATT 58.743 40.000 0.00 0.00 0.00 1.73
653 654 0.595567 CCACGGAGTCGACGAAACAA 60.596 55.000 10.46 0.00 41.61 2.83
733 734 2.677524 GCAGTGGCCATCCAAGCA 60.678 61.111 9.72 0.00 45.53 3.91
740 741 2.757099 CCATCCAAGCAGGTGGCC 60.757 66.667 0.00 0.00 46.50 5.36
758 759 0.396811 CCTCGAAGGGTTTGGACACT 59.603 55.000 0.00 0.00 42.76 3.55
776 782 3.119814 ACACTACTACAGCATCGTGTGAG 60.120 47.826 0.00 0.00 34.65 3.51
813 819 2.288458 GAGAGTCTAATCCTCGTGACGG 59.712 54.545 4.70 0.00 34.92 4.79
818 824 0.454600 TAATCCTCGTGACGGAGCAC 59.545 55.000 4.70 0.00 33.29 4.40
919 932 9.453572 TCTTCATCTCTTGCTTAAATTACATGT 57.546 29.630 2.69 2.69 0.00 3.21
921 934 9.844790 TTCATCTCTTGCTTAAATTACATGTTG 57.155 29.630 2.30 0.00 0.00 3.33
922 935 7.970061 TCATCTCTTGCTTAAATTACATGTTGC 59.030 33.333 2.30 0.00 0.00 4.17
923 936 7.213216 TCTCTTGCTTAAATTACATGTTGCA 57.787 32.000 2.30 1.31 0.00 4.08
926 945 8.464770 TCTTGCTTAAATTACATGTTGCATTC 57.535 30.769 2.30 0.00 0.00 2.67
945 964 4.402056 TTCCTTTGTCTCACTCTCGTTT 57.598 40.909 0.00 0.00 0.00 3.60
947 966 3.132289 TCCTTTGTCTCACTCTCGTTTGT 59.868 43.478 0.00 0.00 0.00 2.83
949 968 3.520290 TTGTCTCACTCTCGTTTGTGT 57.480 42.857 0.00 0.00 35.82 3.72
950 969 2.809446 TGTCTCACTCTCGTTTGTGTG 58.191 47.619 0.00 0.00 35.82 3.82
951 970 2.128035 GTCTCACTCTCGTTTGTGTGG 58.872 52.381 0.00 0.00 35.82 4.17
952 971 2.028876 TCTCACTCTCGTTTGTGTGGA 58.971 47.619 0.00 0.00 35.82 4.02
953 972 2.628178 TCTCACTCTCGTTTGTGTGGAT 59.372 45.455 0.00 0.00 35.82 3.41
958 990 4.509970 CACTCTCGTTTGTGTGGATTACAA 59.490 41.667 0.00 0.00 41.89 2.41
1023 1055 2.564947 GGAGATGTCAGACCTCACAAGT 59.435 50.000 8.40 0.00 0.00 3.16
1074 1106 1.928706 GAGTCGAGCAGGAGACGCTT 61.929 60.000 0.00 0.00 41.86 4.68
1098 1130 1.480498 GGAACCTTCCAGGGCAAGAAA 60.480 52.381 0.00 0.00 46.76 2.52
1110 1142 1.024271 GCAAGAAACAGAGTGTGGCA 58.976 50.000 0.00 0.00 0.00 4.92
1242 1274 1.658114 GGTGAGGAAAAACGGCACC 59.342 57.895 0.00 0.00 41.77 5.01
1257 1289 1.295423 CACCTGGTACCCGGTGAAG 59.705 63.158 38.82 20.10 44.62 3.02
1293 1325 0.321210 TGGTCATCAACGTTGGCGAT 60.321 50.000 27.02 11.54 42.00 4.58
1356 1388 1.078708 CAGGGTATTGCCGGACGTT 60.079 57.895 5.05 0.00 38.44 3.99
1362 1394 1.659098 GTATTGCCGGACGTTGAGAAG 59.341 52.381 5.05 0.00 0.00 2.85
1536 1568 6.266330 TCGTGGATAGTCTCAAGATCAATCAT 59.734 38.462 0.00 0.00 0.00 2.45
1545 1577 6.705381 GTCTCAAGATCAATCATGGAACCTAG 59.295 42.308 0.00 0.00 0.00 3.02
1655 1687 8.466798 CCTGGACCAAAAATAAATAAACTCGAT 58.533 33.333 0.00 0.00 0.00 3.59
1661 1693 9.632807 CCAAAAATAAATAAACTCGATTGGACA 57.367 29.630 0.36 0.00 36.55 4.02
1715 1747 4.822026 GTGAAATGCACCACTAGTCTACT 58.178 43.478 0.00 0.00 41.78 2.57
1752 1792 1.351350 ACCTTCTAGGGCAACAACTCC 59.649 52.381 0.00 0.00 40.58 3.85
1772 1812 3.132289 TCCAGAAGCGATCGGATTTAGTT 59.868 43.478 18.30 0.00 0.00 2.24
1833 1876 2.038659 CCAAGAGGAAAAACCAGCCAA 58.961 47.619 0.00 0.00 42.04 4.52
1868 1911 6.832384 AGGTCATCGTTCCTTAGTCTGTTATA 59.168 38.462 0.00 0.00 0.00 0.98
1952 1995 4.883083 TCAGCTAATGGCCTATCTTTACG 58.117 43.478 3.32 0.00 43.05 3.18
1955 1998 5.864474 CAGCTAATGGCCTATCTTTACGTAG 59.136 44.000 3.32 0.00 43.05 3.51
1961 2004 7.684937 ATGGCCTATCTTTACGTAGTAGTAG 57.315 40.000 3.32 0.00 46.93 2.57
1971 2014 8.598509 CTTTACGTAGTAGTAGTAAAGCAGTG 57.401 38.462 17.38 0.00 46.93 3.66
1972 2015 4.979388 ACGTAGTAGTAGTAAAGCAGTGC 58.021 43.478 7.13 7.13 41.94 4.40
1974 2017 5.029014 CGTAGTAGTAGTAAAGCAGTGCTG 58.971 45.833 20.55 0.00 39.62 4.41
1975 2018 5.163784 CGTAGTAGTAGTAAAGCAGTGCTGA 60.164 44.000 20.55 7.19 39.62 4.26
1976 2019 5.923733 AGTAGTAGTAAAGCAGTGCTGAT 57.076 39.130 20.55 13.56 39.62 2.90
1977 2020 7.254692 CGTAGTAGTAGTAAAGCAGTGCTGATA 60.255 40.741 20.55 12.47 39.62 2.15
1988 2036 1.076332 GTGCTGATACGGTTCACCAC 58.924 55.000 0.00 0.00 35.14 4.16
2033 2081 6.650390 GCCCATGTGATTTTTGTTATTCAACT 59.350 34.615 0.00 0.00 35.61 3.16
2055 2103 1.203994 GCATGCCAGATTTGCTTCTGT 59.796 47.619 6.36 0.00 41.30 3.41
2194 2244 4.011023 CGAATAGATAGTCCCATCTCGGT 58.989 47.826 0.00 0.00 36.63 4.69
2258 2309 2.929398 CAAGAACCAACAAGCCAACAAC 59.071 45.455 0.00 0.00 0.00 3.32
2278 2329 6.365520 ACAACACAATTAAAGAGGAGAGGTT 58.634 36.000 0.00 0.00 0.00 3.50
2340 2391 0.319900 GAAAGCTCGAGACAGTGCCA 60.320 55.000 18.75 0.00 0.00 4.92
2375 2430 7.165483 CAGAAAAAGATTCAAGATTGATAGCGC 59.835 37.037 0.00 0.00 37.00 5.92
2376 2431 5.429957 AAAGATTCAAGATTGATAGCGCC 57.570 39.130 2.29 0.00 37.00 6.53
2377 2432 3.062763 AGATTCAAGATTGATAGCGCCG 58.937 45.455 2.29 0.00 37.00 6.46
2378 2433 2.595124 TTCAAGATTGATAGCGCCGA 57.405 45.000 2.29 0.00 37.00 5.54
2394 2449 0.951040 CCGACCTGAAGACCTGTTGC 60.951 60.000 0.00 0.00 0.00 4.17
2460 2515 3.869272 CGCCGCACCAGCATCTTC 61.869 66.667 0.00 0.00 42.27 2.87
2461 2516 2.437359 GCCGCACCAGCATCTTCT 60.437 61.111 0.00 0.00 42.27 2.85
2475 2530 2.606519 TTCTGCCACCGGTAGCCT 60.607 61.111 22.55 0.00 35.38 4.58
2483 2538 4.162690 CCGGTAGCCTCAGTGCCC 62.163 72.222 0.00 0.00 0.00 5.36
2492 2547 4.664267 TCAGTGCCCCCAGGAGCT 62.664 66.667 0.00 0.00 33.47 4.09
2497 2552 3.883549 GCCCCCAGGAGCTCCATC 61.884 72.222 33.90 12.11 38.89 3.51
2500 2555 3.554342 CCCAGGAGCTCCATCCGG 61.554 72.222 33.90 25.29 44.65 5.14
2501 2556 4.247380 CCAGGAGCTCCATCCGGC 62.247 72.222 33.90 5.61 44.65 6.13
2502 2557 4.247380 CAGGAGCTCCATCCGGCC 62.247 72.222 33.90 5.53 44.65 6.13
2505 2560 3.849951 GAGCTCCATCCGGCCGAA 61.850 66.667 30.73 6.63 0.00 4.30
2515 2576 3.186047 CGGCCGAAGAACGCGAAT 61.186 61.111 24.07 0.00 41.07 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.126869 TCAAATGCTCTCTTGTGTGGAAAAA 59.873 36.000 0.00 0.00 0.00 1.94
23 24 4.644234 TCAAATGCTCTCTTGTGTGGAAAA 59.356 37.500 0.00 0.00 0.00 2.29
24 25 4.036734 GTCAAATGCTCTCTTGTGTGGAAA 59.963 41.667 0.00 0.00 0.00 3.13
25 26 3.565482 GTCAAATGCTCTCTTGTGTGGAA 59.435 43.478 0.00 0.00 0.00 3.53
26 27 3.141398 GTCAAATGCTCTCTTGTGTGGA 58.859 45.455 0.00 0.00 0.00 4.02
27 28 2.227388 GGTCAAATGCTCTCTTGTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
28 29 3.144506 AGGTCAAATGCTCTCTTGTGTG 58.855 45.455 0.00 0.00 0.00 3.82
29 30 3.498774 AGGTCAAATGCTCTCTTGTGT 57.501 42.857 0.00 0.00 0.00 3.72
30 31 3.817084 TCAAGGTCAAATGCTCTCTTGTG 59.183 43.478 0.00 0.00 34.82 3.33
31 32 4.090761 TCAAGGTCAAATGCTCTCTTGT 57.909 40.909 0.00 0.00 34.82 3.16
32 33 5.415077 AGATTCAAGGTCAAATGCTCTCTTG 59.585 40.000 0.00 0.00 34.61 3.02
33 34 5.568392 AGATTCAAGGTCAAATGCTCTCTT 58.432 37.500 0.00 0.00 0.00 2.85
34 35 5.176741 AGATTCAAGGTCAAATGCTCTCT 57.823 39.130 0.00 0.00 0.00 3.10
35 36 5.893897 AAGATTCAAGGTCAAATGCTCTC 57.106 39.130 0.00 0.00 0.00 3.20
36 37 7.114754 TGATAAGATTCAAGGTCAAATGCTCT 58.885 34.615 0.00 0.00 0.00 4.09
37 38 7.325660 TGATAAGATTCAAGGTCAAATGCTC 57.674 36.000 0.00 0.00 0.00 4.26
38 39 6.320672 CCTGATAAGATTCAAGGTCAAATGCT 59.679 38.462 0.00 0.00 0.00 3.79
39 40 6.096001 ACCTGATAAGATTCAAGGTCAAATGC 59.904 38.462 0.00 0.00 0.00 3.56
40 41 7.337689 TGACCTGATAAGATTCAAGGTCAAATG 59.662 37.037 18.01 0.00 43.29 2.32
41 42 7.405292 TGACCTGATAAGATTCAAGGTCAAAT 58.595 34.615 18.01 0.00 43.29 2.32
42 43 6.778821 TGACCTGATAAGATTCAAGGTCAAA 58.221 36.000 18.01 0.00 43.29 2.69
43 44 6.373005 TGACCTGATAAGATTCAAGGTCAA 57.627 37.500 18.01 4.76 43.29 3.18
44 45 6.013379 AGTTGACCTGATAAGATTCAAGGTCA 60.013 38.462 16.74 16.74 43.84 4.02
45 46 6.410540 AGTTGACCTGATAAGATTCAAGGTC 58.589 40.000 12.22 12.22 40.52 3.85
46 47 6.380079 AGTTGACCTGATAAGATTCAAGGT 57.620 37.500 0.00 0.00 33.00 3.50
47 48 9.482627 GTATAGTTGACCTGATAAGATTCAAGG 57.517 37.037 0.00 0.00 0.00 3.61
57 58 9.429109 TGGAACTTATGTATAGTTGACCTGATA 57.571 33.333 0.00 0.00 36.04 2.15
58 59 8.204836 GTGGAACTTATGTATAGTTGACCTGAT 58.795 37.037 0.00 0.00 36.04 2.90
59 60 7.553334 GTGGAACTTATGTATAGTTGACCTGA 58.447 38.462 0.00 0.00 36.04 3.86
60 61 7.772332 GTGGAACTTATGTATAGTTGACCTG 57.228 40.000 0.00 0.00 36.04 4.00
78 79 9.406828 GGAAACATTTTATACAAAGAGTGGAAC 57.593 33.333 0.00 0.00 0.00 3.62
79 80 9.137459 TGGAAACATTTTATACAAAGAGTGGAA 57.863 29.630 0.00 0.00 33.40 3.53
80 81 8.698973 TGGAAACATTTTATACAAAGAGTGGA 57.301 30.769 0.00 0.00 33.40 4.02
81 82 9.757227 TTTGGAAACATTTTATACAAAGAGTGG 57.243 29.630 0.00 0.00 42.32 4.00
98 99 9.500785 AGAACTTTGAAAGAAATTTTGGAAACA 57.499 25.926 12.53 0.00 39.83 2.83
136 137 9.334947 TGGTGCAATAGAAATTTTGAAAAATGA 57.665 25.926 1.91 0.00 38.53 2.57
137 138 9.947669 TTGGTGCAATAGAAATTTTGAAAAATG 57.052 25.926 1.91 0.00 38.53 2.32
174 175 9.284968 AGTACTACTATGTGCAGAAATGTTTTT 57.715 29.630 0.00 0.00 0.00 1.94
175 176 8.848474 AGTACTACTATGTGCAGAAATGTTTT 57.152 30.769 0.00 0.00 0.00 2.43
176 177 8.721478 CAAGTACTACTATGTGCAGAAATGTTT 58.279 33.333 0.00 0.00 0.00 2.83
177 178 7.878127 ACAAGTACTACTATGTGCAGAAATGTT 59.122 33.333 0.00 0.00 0.00 2.71
178 179 7.331934 CACAAGTACTACTATGTGCAGAAATGT 59.668 37.037 11.44 0.00 33.77 2.71
179 180 7.331934 ACACAAGTACTACTATGTGCAGAAATG 59.668 37.037 20.35 2.66 39.03 2.32
180 181 7.331934 CACACAAGTACTACTATGTGCAGAAAT 59.668 37.037 20.35 2.81 39.03 2.17
181 182 6.645003 CACACAAGTACTACTATGTGCAGAAA 59.355 38.462 20.35 0.00 39.03 2.52
182 183 6.015772 TCACACAAGTACTACTATGTGCAGAA 60.016 38.462 20.35 5.76 39.03 3.02
183 184 5.475564 TCACACAAGTACTACTATGTGCAGA 59.524 40.000 20.35 16.44 39.03 4.26
184 185 5.709966 TCACACAAGTACTACTATGTGCAG 58.290 41.667 20.35 14.90 39.03 4.41
185 186 5.715434 TCACACAAGTACTACTATGTGCA 57.285 39.130 20.35 8.72 39.03 4.57
186 187 6.100004 ACATCACACAAGTACTACTATGTGC 58.900 40.000 20.35 0.00 39.03 4.57
187 188 7.598869 ACAACATCACACAAGTACTACTATGTG 59.401 37.037 19.29 19.29 40.12 3.21
188 189 7.667557 ACAACATCACACAAGTACTACTATGT 58.332 34.615 0.00 0.00 0.00 2.29
189 190 8.534333 AACAACATCACACAAGTACTACTATG 57.466 34.615 0.00 0.00 0.00 2.23
190 191 8.585881 AGAACAACATCACACAAGTACTACTAT 58.414 33.333 0.00 0.00 0.00 2.12
191 192 7.865889 CAGAACAACATCACACAAGTACTACTA 59.134 37.037 0.00 0.00 0.00 1.82
192 193 6.701841 CAGAACAACATCACACAAGTACTACT 59.298 38.462 0.00 0.00 0.00 2.57
193 194 6.564125 GCAGAACAACATCACACAAGTACTAC 60.564 42.308 0.00 0.00 0.00 2.73
194 195 5.465390 GCAGAACAACATCACACAAGTACTA 59.535 40.000 0.00 0.00 0.00 1.82
195 196 4.273480 GCAGAACAACATCACACAAGTACT 59.727 41.667 0.00 0.00 0.00 2.73
196 197 4.035091 TGCAGAACAACATCACACAAGTAC 59.965 41.667 0.00 0.00 0.00 2.73
197 198 4.195416 TGCAGAACAACATCACACAAGTA 58.805 39.130 0.00 0.00 0.00 2.24
198 199 3.016031 TGCAGAACAACATCACACAAGT 58.984 40.909 0.00 0.00 0.00 3.16
199 200 3.696281 TGCAGAACAACATCACACAAG 57.304 42.857 0.00 0.00 0.00 3.16
200 201 4.082300 ACTTTGCAGAACAACATCACACAA 60.082 37.500 0.00 0.00 38.23 3.33
201 202 3.443329 ACTTTGCAGAACAACATCACACA 59.557 39.130 0.00 0.00 38.23 3.72
202 203 4.032703 ACTTTGCAGAACAACATCACAC 57.967 40.909 0.00 0.00 38.23 3.82
203 204 4.717233 AACTTTGCAGAACAACATCACA 57.283 36.364 0.00 0.00 38.23 3.58
204 205 4.204978 CGAAACTTTGCAGAACAACATCAC 59.795 41.667 0.00 0.00 38.23 3.06
205 206 4.095632 TCGAAACTTTGCAGAACAACATCA 59.904 37.500 0.00 0.00 38.23 3.07
206 207 4.597079 TCGAAACTTTGCAGAACAACATC 58.403 39.130 0.00 0.00 38.23 3.06
207 208 4.096382 ACTCGAAACTTTGCAGAACAACAT 59.904 37.500 0.00 0.00 38.23 2.71
208 209 3.438781 ACTCGAAACTTTGCAGAACAACA 59.561 39.130 0.00 0.00 38.23 3.33
209 210 4.016113 ACTCGAAACTTTGCAGAACAAC 57.984 40.909 0.00 0.00 38.23 3.32
210 211 4.155099 TGAACTCGAAACTTTGCAGAACAA 59.845 37.500 0.00 0.00 36.13 2.83
211 212 3.687212 TGAACTCGAAACTTTGCAGAACA 59.313 39.130 0.00 0.00 0.00 3.18
212 213 4.201822 ACTGAACTCGAAACTTTGCAGAAC 60.202 41.667 0.00 0.00 0.00 3.01
213 214 3.938963 ACTGAACTCGAAACTTTGCAGAA 59.061 39.130 0.00 0.00 0.00 3.02
214 215 3.531538 ACTGAACTCGAAACTTTGCAGA 58.468 40.909 0.00 0.00 0.00 4.26
215 216 3.951979 ACTGAACTCGAAACTTTGCAG 57.048 42.857 0.00 0.00 0.00 4.41
216 217 3.438781 ACAACTGAACTCGAAACTTTGCA 59.561 39.130 0.00 0.00 0.00 4.08
217 218 4.016113 ACAACTGAACTCGAAACTTTGC 57.984 40.909 0.00 0.00 0.00 3.68
218 219 5.869350 AGAACAACTGAACTCGAAACTTTG 58.131 37.500 0.00 0.00 0.00 2.77
219 220 6.496338 AAGAACAACTGAACTCGAAACTTT 57.504 33.333 0.00 0.00 0.00 2.66
220 221 6.496338 AAAGAACAACTGAACTCGAAACTT 57.504 33.333 0.00 0.00 0.00 2.66
221 222 6.496338 AAAAGAACAACTGAACTCGAAACT 57.504 33.333 0.00 0.00 0.00 2.66
258 259 2.430694 GTGTGGCCAAACTCCTCTTTTT 59.569 45.455 19.57 0.00 0.00 1.94
259 260 2.031870 GTGTGGCCAAACTCCTCTTTT 58.968 47.619 19.57 0.00 0.00 2.27
260 261 1.064017 TGTGTGGCCAAACTCCTCTTT 60.064 47.619 26.47 0.00 0.00 2.52
261 262 0.550914 TGTGTGGCCAAACTCCTCTT 59.449 50.000 26.47 0.00 0.00 2.85
262 263 0.550914 TTGTGTGGCCAAACTCCTCT 59.449 50.000 26.47 0.00 0.00 3.69
263 264 0.954452 CTTGTGTGGCCAAACTCCTC 59.046 55.000 26.47 6.52 0.00 3.71
264 265 1.109323 GCTTGTGTGGCCAAACTCCT 61.109 55.000 26.47 0.00 0.00 3.69
265 266 1.363807 GCTTGTGTGGCCAAACTCC 59.636 57.895 26.47 11.01 0.00 3.85
266 267 0.675633 ATGCTTGTGTGGCCAAACTC 59.324 50.000 26.47 15.48 0.00 3.01
267 268 1.122227 AATGCTTGTGTGGCCAAACT 58.878 45.000 26.47 3.00 0.00 2.66
268 269 1.202510 TCAATGCTTGTGTGGCCAAAC 60.203 47.619 20.04 20.04 0.00 2.93
269 270 1.117994 TCAATGCTTGTGTGGCCAAA 58.882 45.000 7.24 0.00 0.00 3.28
270 271 1.001068 CATCAATGCTTGTGTGGCCAA 59.999 47.619 7.24 0.00 0.00 4.52
271 272 0.604073 CATCAATGCTTGTGTGGCCA 59.396 50.000 0.00 0.00 0.00 5.36
272 273 3.429043 CATCAATGCTTGTGTGGCC 57.571 52.632 0.00 0.00 0.00 5.36
283 284 6.750501 CCTTAGAGTTCATTTGTGCATCAATG 59.249 38.462 12.49 12.49 35.84 2.82
284 285 6.660521 TCCTTAGAGTTCATTTGTGCATCAAT 59.339 34.615 0.00 0.00 35.84 2.57
285 286 6.003326 TCCTTAGAGTTCATTTGTGCATCAA 58.997 36.000 0.00 0.00 0.00 2.57
286 287 5.559770 TCCTTAGAGTTCATTTGTGCATCA 58.440 37.500 0.00 0.00 0.00 3.07
287 288 6.690194 ATCCTTAGAGTTCATTTGTGCATC 57.310 37.500 0.00 0.00 0.00 3.91
288 289 7.568349 TCTATCCTTAGAGTTCATTTGTGCAT 58.432 34.615 0.00 0.00 30.79 3.96
289 290 6.946340 TCTATCCTTAGAGTTCATTTGTGCA 58.054 36.000 0.00 0.00 30.79 4.57
290 291 8.341173 CAATCTATCCTTAGAGTTCATTTGTGC 58.659 37.037 0.00 0.00 37.86 4.57
291 292 9.388506 ACAATCTATCCTTAGAGTTCATTTGTG 57.611 33.333 0.00 0.00 37.86 3.33
299 300 9.884814 ACCACTATACAATCTATCCTTAGAGTT 57.115 33.333 0.00 0.00 37.86 3.01
304 305 9.769677 AGCATACCACTATACAATCTATCCTTA 57.230 33.333 0.00 0.00 0.00 2.69
305 306 8.671987 AGCATACCACTATACAATCTATCCTT 57.328 34.615 0.00 0.00 0.00 3.36
306 307 9.415008 CTAGCATACCACTATACAATCTATCCT 57.585 37.037 0.00 0.00 0.00 3.24
307 308 9.191479 ACTAGCATACCACTATACAATCTATCC 57.809 37.037 0.00 0.00 0.00 2.59
311 312 8.935614 TGTACTAGCATACCACTATACAATCT 57.064 34.615 0.00 0.00 0.00 2.40
314 315 9.138596 TGATTGTACTAGCATACCACTATACAA 57.861 33.333 0.00 0.00 33.41 2.41
315 316 8.573885 GTGATTGTACTAGCATACCACTATACA 58.426 37.037 0.00 0.00 0.00 2.29
316 317 8.573885 TGTGATTGTACTAGCATACCACTATAC 58.426 37.037 0.00 0.00 0.00 1.47
317 318 8.700439 TGTGATTGTACTAGCATACCACTATA 57.300 34.615 0.00 0.00 0.00 1.31
318 319 7.597288 TGTGATTGTACTAGCATACCACTAT 57.403 36.000 0.00 0.00 0.00 2.12
319 320 7.123697 AGTTGTGATTGTACTAGCATACCACTA 59.876 37.037 0.00 0.00 0.00 2.74
320 321 5.932619 TGTGATTGTACTAGCATACCACT 57.067 39.130 0.00 0.00 0.00 4.00
321 322 6.106673 AGTTGTGATTGTACTAGCATACCAC 58.893 40.000 0.00 0.00 0.00 4.16
322 323 6.294361 AGTTGTGATTGTACTAGCATACCA 57.706 37.500 0.00 0.00 0.00 3.25
323 324 7.201617 GGAAAGTTGTGATTGTACTAGCATACC 60.202 40.741 0.00 0.00 0.00 2.73
324 325 7.201617 GGGAAAGTTGTGATTGTACTAGCATAC 60.202 40.741 0.00 1.29 0.00 2.39
325 326 6.821665 GGGAAAGTTGTGATTGTACTAGCATA 59.178 38.462 0.00 0.00 0.00 3.14
326 327 5.648092 GGGAAAGTTGTGATTGTACTAGCAT 59.352 40.000 0.00 0.00 0.00 3.79
327 328 5.001232 GGGAAAGTTGTGATTGTACTAGCA 58.999 41.667 0.00 0.00 0.00 3.49
328 329 5.001232 TGGGAAAGTTGTGATTGTACTAGC 58.999 41.667 0.00 0.00 0.00 3.42
329 330 7.390440 TCATTGGGAAAGTTGTGATTGTACTAG 59.610 37.037 0.00 0.00 0.00 2.57
330 331 7.227873 TCATTGGGAAAGTTGTGATTGTACTA 58.772 34.615 0.00 0.00 0.00 1.82
331 332 6.068010 TCATTGGGAAAGTTGTGATTGTACT 58.932 36.000 0.00 0.00 0.00 2.73
332 333 6.325919 TCATTGGGAAAGTTGTGATTGTAC 57.674 37.500 0.00 0.00 0.00 2.90
333 334 6.718912 TCATCATTGGGAAAGTTGTGATTGTA 59.281 34.615 0.00 0.00 0.00 2.41
334 335 5.539574 TCATCATTGGGAAAGTTGTGATTGT 59.460 36.000 0.00 0.00 0.00 2.71
335 336 6.028146 TCATCATTGGGAAAGTTGTGATTG 57.972 37.500 0.00 0.00 0.00 2.67
336 337 6.669125 TTCATCATTGGGAAAGTTGTGATT 57.331 33.333 0.00 0.00 0.00 2.57
337 338 6.669125 TTTCATCATTGGGAAAGTTGTGAT 57.331 33.333 0.00 0.00 0.00 3.06
338 339 6.477053 TTTTCATCATTGGGAAAGTTGTGA 57.523 33.333 5.14 0.00 34.77 3.58
339 340 6.538021 TGTTTTTCATCATTGGGAAAGTTGTG 59.462 34.615 5.14 0.00 34.77 3.33
340 341 6.648192 TGTTTTTCATCATTGGGAAAGTTGT 58.352 32.000 5.14 0.00 34.77 3.32
341 342 7.733402 ATGTTTTTCATCATTGGGAAAGTTG 57.267 32.000 5.14 0.00 34.77 3.16
342 343 9.844257 TTAATGTTTTTCATCATTGGGAAAGTT 57.156 25.926 0.00 3.74 35.48 2.66
343 344 9.844257 TTTAATGTTTTTCATCATTGGGAAAGT 57.156 25.926 0.00 0.00 35.48 2.66
366 367 9.766277 GTTGCATTTCAGTCAAACAAATTTTTA 57.234 25.926 0.00 0.00 0.00 1.52
367 368 8.295288 TGTTGCATTTCAGTCAAACAAATTTTT 58.705 25.926 0.00 0.00 0.00 1.94
368 369 7.814642 TGTTGCATTTCAGTCAAACAAATTTT 58.185 26.923 0.00 0.00 0.00 1.82
369 370 7.375106 TGTTGCATTTCAGTCAAACAAATTT 57.625 28.000 0.00 0.00 0.00 1.82
370 371 6.981762 TGTTGCATTTCAGTCAAACAAATT 57.018 29.167 0.00 0.00 0.00 1.82
371 372 6.762187 TCATGTTGCATTTCAGTCAAACAAAT 59.238 30.769 0.00 0.00 0.00 2.32
372 373 6.104665 TCATGTTGCATTTCAGTCAAACAAA 58.895 32.000 0.00 0.00 0.00 2.83
373 374 5.658468 TCATGTTGCATTTCAGTCAAACAA 58.342 33.333 0.00 0.00 0.00 2.83
374 375 5.259832 TCATGTTGCATTTCAGTCAAACA 57.740 34.783 0.00 0.00 0.00 2.83
375 376 6.774354 ATTCATGTTGCATTTCAGTCAAAC 57.226 33.333 0.00 0.00 0.00 2.93
376 377 7.211573 AGAATTCATGTTGCATTTCAGTCAAA 58.788 30.769 8.44 0.00 0.00 2.69
377 378 6.751157 AGAATTCATGTTGCATTTCAGTCAA 58.249 32.000 8.44 0.00 0.00 3.18
378 379 6.335471 AGAATTCATGTTGCATTTCAGTCA 57.665 33.333 8.44 0.00 0.00 3.41
379 380 6.971184 CCTAGAATTCATGTTGCATTTCAGTC 59.029 38.462 8.44 0.00 0.00 3.51
380 381 6.660521 TCCTAGAATTCATGTTGCATTTCAGT 59.339 34.615 8.44 0.00 0.00 3.41
381 382 7.092137 TCCTAGAATTCATGTTGCATTTCAG 57.908 36.000 8.44 0.00 0.00 3.02
382 383 7.465353 TTCCTAGAATTCATGTTGCATTTCA 57.535 32.000 8.44 0.00 0.00 2.69
383 384 8.031277 AGTTTCCTAGAATTCATGTTGCATTTC 58.969 33.333 8.44 0.00 0.00 2.17
384 385 7.899973 AGTTTCCTAGAATTCATGTTGCATTT 58.100 30.769 8.44 0.00 0.00 2.32
385 386 7.472334 AGTTTCCTAGAATTCATGTTGCATT 57.528 32.000 8.44 0.00 0.00 3.56
386 387 7.318141 CAAGTTTCCTAGAATTCATGTTGCAT 58.682 34.615 8.44 0.00 0.00 3.96
387 388 6.294675 CCAAGTTTCCTAGAATTCATGTTGCA 60.295 38.462 8.44 0.00 0.00 4.08
388 389 6.095377 CCAAGTTTCCTAGAATTCATGTTGC 58.905 40.000 8.44 0.00 0.00 4.17
389 390 6.095377 GCCAAGTTTCCTAGAATTCATGTTG 58.905 40.000 8.44 0.29 0.00 3.33
390 391 5.106157 CGCCAAGTTTCCTAGAATTCATGTT 60.106 40.000 8.44 0.00 0.00 2.71
391 392 4.396166 CGCCAAGTTTCCTAGAATTCATGT 59.604 41.667 8.44 0.00 0.00 3.21
392 393 4.396166 ACGCCAAGTTTCCTAGAATTCATG 59.604 41.667 8.44 0.00 0.00 3.07
393 394 4.589908 ACGCCAAGTTTCCTAGAATTCAT 58.410 39.130 8.44 0.00 0.00 2.57
394 395 4.015872 ACGCCAAGTTTCCTAGAATTCA 57.984 40.909 8.44 0.00 0.00 2.57
395 396 5.642491 ACTTACGCCAAGTTTCCTAGAATTC 59.358 40.000 0.00 0.00 45.54 2.17
396 397 5.557866 ACTTACGCCAAGTTTCCTAGAATT 58.442 37.500 0.00 0.00 45.54 2.17
397 398 5.161943 ACTTACGCCAAGTTTCCTAGAAT 57.838 39.130 0.00 0.00 45.54 2.40
398 399 4.612264 ACTTACGCCAAGTTTCCTAGAA 57.388 40.909 0.00 0.00 45.54 2.10
407 408 6.130166 AGGATACCGAAACTTACGCCAAGT 62.130 45.833 0.00 0.00 44.37 3.16
408 409 2.606272 GGATACCGAAACTTACGCCAAG 59.394 50.000 0.00 0.00 40.38 3.61
409 410 2.234414 AGGATACCGAAACTTACGCCAA 59.766 45.455 0.00 0.00 37.17 4.52
410 411 1.826720 AGGATACCGAAACTTACGCCA 59.173 47.619 0.00 0.00 37.17 5.69
411 412 2.591571 AGGATACCGAAACTTACGCC 57.408 50.000 0.00 0.00 37.17 5.68
412 413 6.256321 TGAATAAAGGATACCGAAACTTACGC 59.744 38.462 0.00 0.00 37.17 4.42
413 414 7.516312 GCTGAATAAAGGATACCGAAACTTACG 60.516 40.741 0.00 0.00 37.17 3.18
414 415 7.494952 AGCTGAATAAAGGATACCGAAACTTAC 59.505 37.037 0.00 0.00 37.17 2.34
415 416 7.562135 AGCTGAATAAAGGATACCGAAACTTA 58.438 34.615 0.00 0.00 37.17 2.24
416 417 6.415573 AGCTGAATAAAGGATACCGAAACTT 58.584 36.000 0.00 0.00 37.17 2.66
417 418 5.990668 AGCTGAATAAAGGATACCGAAACT 58.009 37.500 0.00 0.00 37.17 2.66
418 419 5.236695 GGAGCTGAATAAAGGATACCGAAAC 59.763 44.000 0.00 0.00 37.17 2.78
419 420 5.104693 TGGAGCTGAATAAAGGATACCGAAA 60.105 40.000 0.00 0.00 37.17 3.46
420 421 4.407621 TGGAGCTGAATAAAGGATACCGAA 59.592 41.667 0.00 0.00 37.17 4.30
421 422 3.964688 TGGAGCTGAATAAAGGATACCGA 59.035 43.478 0.00 0.00 37.17 4.69
422 423 4.336889 TGGAGCTGAATAAAGGATACCG 57.663 45.455 0.00 0.00 37.17 4.02
423 424 5.685728 ACTTGGAGCTGAATAAAGGATACC 58.314 41.667 0.00 0.00 37.17 2.73
424 425 6.349300 TGACTTGGAGCTGAATAAAGGATAC 58.651 40.000 0.00 0.00 0.00 2.24
425 426 6.560003 TGACTTGGAGCTGAATAAAGGATA 57.440 37.500 0.00 0.00 0.00 2.59
426 427 5.441718 TGACTTGGAGCTGAATAAAGGAT 57.558 39.130 0.00 0.00 0.00 3.24
427 428 4.908601 TGACTTGGAGCTGAATAAAGGA 57.091 40.909 0.00 0.00 0.00 3.36
428 429 4.946157 ACATGACTTGGAGCTGAATAAAGG 59.054 41.667 0.00 0.00 0.00 3.11
429 430 5.163683 CCACATGACTTGGAGCTGAATAAAG 60.164 44.000 0.00 0.00 36.02 1.85
430 431 4.701651 CCACATGACTTGGAGCTGAATAAA 59.298 41.667 0.00 0.00 36.02 1.40
431 432 4.263462 ACCACATGACTTGGAGCTGAATAA 60.263 41.667 7.78 0.00 37.58 1.40
432 433 3.264193 ACCACATGACTTGGAGCTGAATA 59.736 43.478 7.78 0.00 37.58 1.75
433 434 2.040813 ACCACATGACTTGGAGCTGAAT 59.959 45.455 7.78 0.00 37.58 2.57
434 435 1.421268 ACCACATGACTTGGAGCTGAA 59.579 47.619 7.78 0.00 37.58 3.02
435 436 1.059098 ACCACATGACTTGGAGCTGA 58.941 50.000 7.78 0.00 37.58 4.26
436 437 2.234661 TCTACCACATGACTTGGAGCTG 59.765 50.000 7.78 0.00 37.58 4.24
437 438 2.499289 CTCTACCACATGACTTGGAGCT 59.501 50.000 7.78 0.00 37.58 4.09
438 439 2.497675 TCTCTACCACATGACTTGGAGC 59.502 50.000 7.78 0.00 37.58 4.70
439 440 4.808414 TTCTCTACCACATGACTTGGAG 57.192 45.455 7.78 5.82 37.58 3.86
440 441 5.762179 ATTTCTCTACCACATGACTTGGA 57.238 39.130 7.78 0.00 37.58 3.53
441 442 8.511604 AAATATTTCTCTACCACATGACTTGG 57.488 34.615 0.00 0.00 40.32 3.61
442 443 9.778993 CAAAATATTTCTCTACCACATGACTTG 57.221 33.333 0.00 0.00 0.00 3.16
443 444 9.739276 TCAAAATATTTCTCTACCACATGACTT 57.261 29.630 0.00 0.00 0.00 3.01
444 445 9.167311 GTCAAAATATTTCTCTACCACATGACT 57.833 33.333 0.00 0.00 0.00 3.41
445 446 8.946085 TGTCAAAATATTTCTCTACCACATGAC 58.054 33.333 0.00 8.00 33.44 3.06
446 447 9.513906 TTGTCAAAATATTTCTCTACCACATGA 57.486 29.630 0.00 0.00 0.00 3.07
447 448 9.778993 CTTGTCAAAATATTTCTCTACCACATG 57.221 33.333 0.10 0.00 0.00 3.21
448 449 9.739276 TCTTGTCAAAATATTTCTCTACCACAT 57.261 29.630 0.10 0.00 0.00 3.21
449 450 9.567776 TTCTTGTCAAAATATTTCTCTACCACA 57.432 29.630 0.10 0.00 0.00 4.17
491 492 9.624373 CAGCCATTTTAGCAGGATATTAGATAT 57.376 33.333 0.00 0.00 0.00 1.63
492 493 8.825774 TCAGCCATTTTAGCAGGATATTAGATA 58.174 33.333 0.00 0.00 0.00 1.98
493 494 7.693132 TCAGCCATTTTAGCAGGATATTAGAT 58.307 34.615 0.00 0.00 0.00 1.98
494 495 7.078249 TCAGCCATTTTAGCAGGATATTAGA 57.922 36.000 0.00 0.00 0.00 2.10
495 496 7.934855 ATCAGCCATTTTAGCAGGATATTAG 57.065 36.000 0.00 0.00 0.00 1.73
496 497 8.710749 AAATCAGCCATTTTAGCAGGATATTA 57.289 30.769 0.00 0.00 29.60 0.98
497 498 7.607615 AAATCAGCCATTTTAGCAGGATATT 57.392 32.000 0.00 0.00 29.60 1.28
498 499 7.607615 AAAATCAGCCATTTTAGCAGGATAT 57.392 32.000 2.77 0.00 42.02 1.63
499 500 7.422465 AAAAATCAGCCATTTTAGCAGGATA 57.578 32.000 4.77 0.00 42.86 2.59
500 501 5.945144 AAAATCAGCCATTTTAGCAGGAT 57.055 34.783 2.77 0.00 42.02 3.24
501 502 5.743636 AAAAATCAGCCATTTTAGCAGGA 57.256 34.783 4.77 0.00 42.86 3.86
521 522 8.327941 TGAAATTTCACCACAACATTGAAAAA 57.672 26.923 16.91 0.00 41.35 1.94
522 523 7.912056 TGAAATTTCACCACAACATTGAAAA 57.088 28.000 16.91 0.00 41.35 2.29
523 524 7.042858 CGATGAAATTTCACCACAACATTGAAA 60.043 33.333 22.71 0.00 42.02 2.69
524 525 6.420306 CGATGAAATTTCACCACAACATTGAA 59.580 34.615 22.71 0.00 40.49 2.69
525 526 5.919707 CGATGAAATTTCACCACAACATTGA 59.080 36.000 22.71 0.00 40.49 2.57
526 527 5.919707 TCGATGAAATTTCACCACAACATTG 59.080 36.000 22.71 8.72 40.49 2.82
527 528 6.083098 TCGATGAAATTTCACCACAACATT 57.917 33.333 22.71 3.97 40.49 2.71
528 529 5.703978 TCGATGAAATTTCACCACAACAT 57.296 34.783 22.71 4.71 40.49 2.71
529 530 5.163612 TGTTCGATGAAATTTCACCACAACA 60.164 36.000 22.71 21.93 40.49 3.33
530 531 5.277825 TGTTCGATGAAATTTCACCACAAC 58.722 37.500 22.71 20.04 40.49 3.32
531 532 5.506686 TGTTCGATGAAATTTCACCACAA 57.493 34.783 22.71 10.55 40.49 3.33
532 533 5.703978 ATGTTCGATGAAATTTCACCACA 57.296 34.783 22.71 20.14 40.49 4.17
533 534 6.912591 GGATATGTTCGATGAAATTTCACCAC 59.087 38.462 22.71 15.87 40.49 4.16
534 535 6.601217 TGGATATGTTCGATGAAATTTCACCA 59.399 34.615 22.71 17.06 40.49 4.17
535 536 7.026631 TGGATATGTTCGATGAAATTTCACC 57.973 36.000 22.71 12.98 40.49 4.02
536 537 8.909708 TTTGGATATGTTCGATGAAATTTCAC 57.090 30.769 22.71 14.91 40.49 3.18
537 538 9.571810 CTTTTGGATATGTTCGATGAAATTTCA 57.428 29.630 22.52 22.52 42.14 2.69
538 539 9.573133 ACTTTTGGATATGTTCGATGAAATTTC 57.427 29.630 11.41 11.41 0.00 2.17
541 542 9.173021 TGTACTTTTGGATATGTTCGATGAAAT 57.827 29.630 0.00 0.00 0.00 2.17
542 543 8.554835 TGTACTTTTGGATATGTTCGATGAAA 57.445 30.769 0.00 0.00 0.00 2.69
543 544 8.731275 ATGTACTTTTGGATATGTTCGATGAA 57.269 30.769 0.00 0.00 0.00 2.57
544 545 8.611757 CAATGTACTTTTGGATATGTTCGATGA 58.388 33.333 0.00 0.00 0.00 2.92
545 546 8.397906 ACAATGTACTTTTGGATATGTTCGATG 58.602 33.333 11.95 0.00 0.00 3.84
546 547 8.506168 ACAATGTACTTTTGGATATGTTCGAT 57.494 30.769 11.95 0.00 0.00 3.59
547 548 7.915293 ACAATGTACTTTTGGATATGTTCGA 57.085 32.000 11.95 0.00 0.00 3.71
548 549 8.233868 TCAACAATGTACTTTTGGATATGTTCG 58.766 33.333 11.95 0.00 0.00 3.95
551 552 9.241919 TGATCAACAATGTACTTTTGGATATGT 57.758 29.630 11.95 0.00 0.00 2.29
552 553 9.726232 CTGATCAACAATGTACTTTTGGATATG 57.274 33.333 11.95 6.92 0.00 1.78
553 554 9.466497 ACTGATCAACAATGTACTTTTGGATAT 57.534 29.630 11.95 4.22 0.00 1.63
554 555 8.862325 ACTGATCAACAATGTACTTTTGGATA 57.138 30.769 11.95 0.57 0.00 2.59
555 556 7.667219 AGACTGATCAACAATGTACTTTTGGAT 59.333 33.333 11.95 6.56 0.00 3.41
556 557 6.998074 AGACTGATCAACAATGTACTTTTGGA 59.002 34.615 11.95 2.84 0.00 3.53
557 558 7.206981 AGACTGATCAACAATGTACTTTTGG 57.793 36.000 11.95 0.00 0.00 3.28
558 559 7.301054 GGAGACTGATCAACAATGTACTTTTG 58.699 38.462 0.00 7.35 0.00 2.44
559 560 6.147821 CGGAGACTGATCAACAATGTACTTTT 59.852 38.462 0.00 0.00 0.00 2.27
560 561 5.639506 CGGAGACTGATCAACAATGTACTTT 59.360 40.000 0.00 0.00 0.00 2.66
561 562 5.171476 CGGAGACTGATCAACAATGTACTT 58.829 41.667 0.00 0.00 0.00 2.24
562 563 4.382040 CCGGAGACTGATCAACAATGTACT 60.382 45.833 0.00 0.00 0.00 2.73
563 564 3.865745 CCGGAGACTGATCAACAATGTAC 59.134 47.826 0.00 0.00 0.00 2.90
564 565 3.118775 CCCGGAGACTGATCAACAATGTA 60.119 47.826 0.73 0.00 0.00 2.29
565 566 2.355108 CCCGGAGACTGATCAACAATGT 60.355 50.000 0.73 0.00 0.00 2.71
566 567 2.093500 TCCCGGAGACTGATCAACAATG 60.093 50.000 0.73 0.00 0.00 2.82
567 568 2.187958 TCCCGGAGACTGATCAACAAT 58.812 47.619 0.73 0.00 0.00 2.71
568 569 1.639722 TCCCGGAGACTGATCAACAA 58.360 50.000 0.73 0.00 0.00 2.83
569 570 1.866015 ATCCCGGAGACTGATCAACA 58.134 50.000 0.73 0.00 0.00 3.33
570 571 2.990066 AATCCCGGAGACTGATCAAC 57.010 50.000 0.73 0.00 0.00 3.18
571 572 4.483950 AGATAATCCCGGAGACTGATCAA 58.516 43.478 0.73 0.00 0.00 2.57
572 573 4.119556 AGATAATCCCGGAGACTGATCA 57.880 45.455 0.73 0.00 0.00 2.92
573 574 6.783708 AATAGATAATCCCGGAGACTGATC 57.216 41.667 0.73 3.10 0.00 2.92
574 575 8.846423 ATAAATAGATAATCCCGGAGACTGAT 57.154 34.615 0.73 0.00 0.00 2.90
575 576 7.893833 TGATAAATAGATAATCCCGGAGACTGA 59.106 37.037 0.73 0.00 0.00 3.41
576 577 8.067751 TGATAAATAGATAATCCCGGAGACTG 57.932 38.462 0.73 0.00 0.00 3.51
577 578 8.666129 TTGATAAATAGATAATCCCGGAGACT 57.334 34.615 0.73 0.00 0.00 3.24
578 579 9.892130 ATTTGATAAATAGATAATCCCGGAGAC 57.108 33.333 0.73 0.00 0.00 3.36
606 607 3.193263 AGCTGCGAATACAGAAGATGTG 58.807 45.455 0.00 0.00 43.80 3.21
612 613 4.153475 GGTTTGTTAGCTGCGAATACAGAA 59.847 41.667 0.00 0.00 40.25 3.02
680 681 0.598419 GGCAAGCCAAAGAACTGCAC 60.598 55.000 6.14 0.00 35.81 4.57
733 734 2.154074 AAACCCTTCGAGGCCACCT 61.154 57.895 5.01 0.00 36.03 4.00
740 741 2.299297 AGTAGTGTCCAAACCCTTCGAG 59.701 50.000 0.00 0.00 0.00 4.04
758 759 3.756963 ACTTCTCACACGATGCTGTAGTA 59.243 43.478 0.00 0.00 0.00 1.82
776 782 0.687354 TCTCTGCCCAGTCCAACTTC 59.313 55.000 0.00 0.00 0.00 3.01
813 819 1.268079 GTTCCTTTGCTCCTTGTGCTC 59.732 52.381 0.00 0.00 0.00 4.26
818 824 3.571401 ACTGAATGTTCCTTTGCTCCTTG 59.429 43.478 0.00 0.00 0.00 3.61
919 932 4.067896 GAGAGTGAGACAAAGGAATGCAA 58.932 43.478 0.00 0.00 0.00 4.08
920 933 3.668447 GAGAGTGAGACAAAGGAATGCA 58.332 45.455 0.00 0.00 0.00 3.96
921 934 2.670414 CGAGAGTGAGACAAAGGAATGC 59.330 50.000 0.00 0.00 0.00 3.56
922 935 3.919216 ACGAGAGTGAGACAAAGGAATG 58.081 45.455 0.00 0.00 46.97 2.67
972 1004 3.953612 ACTTGTCAAGTGCATTCCTGAAA 59.046 39.130 17.49 0.00 41.01 2.69
979 1011 5.048504 CCATTGAGTACTTGTCAAGTGCATT 60.049 40.000 28.47 14.07 45.20 3.56
1110 1142 2.385803 CACGGAGGGTAGTAGTGGAAT 58.614 52.381 0.00 0.00 0.00 3.01
1140 1172 1.489481 TGATGCCGATCACCTTCTCT 58.511 50.000 0.00 0.00 33.40 3.10
1216 1248 0.185901 TTTTTCCTCACCTGCAGGCT 59.814 50.000 33.06 16.98 39.32 4.58
1293 1325 4.349048 CCATTGGTGAGGATCTGGAGAATA 59.651 45.833 0.00 0.00 34.92 1.75
1344 1376 0.673644 CCTTCTCAACGTCCGGCAAT 60.674 55.000 0.00 0.00 0.00 3.56
1752 1792 4.112634 TGAACTAAATCCGATCGCTTCTG 58.887 43.478 10.32 0.00 0.00 3.02
1808 1848 3.321968 GCTGGTTTTTCCTCTTGGATTGT 59.678 43.478 0.00 0.00 42.81 2.71
1809 1849 3.306294 GGCTGGTTTTTCCTCTTGGATTG 60.306 47.826 0.00 0.00 42.81 2.67
1833 1876 2.673523 GATGACCTGGCAGCCACT 59.326 61.111 11.22 0.00 0.00 4.00
1842 1885 3.193691 ACAGACTAAGGAACGATGACCTG 59.806 47.826 0.00 0.00 36.56 4.00
1868 1911 7.237055 AGGTCCCTGTAAAAAGTAGTCAGTTAT 59.763 37.037 0.00 0.00 0.00 1.89
1874 1917 7.148289 GCAAATAGGTCCCTGTAAAAAGTAGTC 60.148 40.741 0.00 0.00 0.00 2.59
1952 1995 6.192234 TCAGCACTGCTTTACTACTACTAC 57.808 41.667 0.00 0.00 36.40 2.73
1955 1998 5.681982 CGTATCAGCACTGCTTTACTACTAC 59.318 44.000 0.00 0.00 36.40 2.73
1961 2004 2.618053 ACCGTATCAGCACTGCTTTAC 58.382 47.619 0.00 5.89 36.40 2.01
1971 2014 2.763651 GGTGGTGAACCGTATCAGC 58.236 57.895 9.25 9.25 45.65 4.26
1988 2036 3.000177 GGCTTTTATGCAAAATTACGCGG 60.000 43.478 12.47 0.00 33.27 6.46
2033 2081 0.452987 GAAGCAAATCTGGCATGCGA 59.547 50.000 12.44 6.97 44.60 5.10
2055 2103 7.552687 ACCAGAAAATCAAAGATAGCATACGAA 59.447 33.333 0.00 0.00 0.00 3.85
2112 2161 3.751018 TGGAGAGGGCCTAGGCGA 61.751 66.667 27.24 2.20 43.06 5.54
2194 2244 7.921786 AGTTGCTAGCATTTGATGTAAAGTA 57.078 32.000 20.13 0.00 0.00 2.24
2258 2309 8.792830 TTATGAACCTCTCCTCTTTAATTGTG 57.207 34.615 0.00 0.00 0.00 3.33
2340 2391 9.972106 ATCTTGAATCTTTTTCTGTATCCTCTT 57.028 29.630 0.00 0.00 0.00 2.85
2375 2430 0.951040 GCAACAGGTCTTCAGGTCGG 60.951 60.000 0.00 0.00 0.00 4.79
2376 2431 0.034059 AGCAACAGGTCTTCAGGTCG 59.966 55.000 0.00 0.00 0.00 4.79
2377 2432 1.070758 TCAGCAACAGGTCTTCAGGTC 59.929 52.381 0.00 0.00 0.00 3.85
2378 2433 1.131638 TCAGCAACAGGTCTTCAGGT 58.868 50.000 0.00 0.00 0.00 4.00
2394 2449 0.746563 ACCCACGTTGTTGGTGTCAG 60.747 55.000 0.00 0.00 34.44 3.51
2460 2515 3.376935 CTGAGGCTACCGGTGGCAG 62.377 68.421 38.89 26.13 38.96 4.85
2461 2516 3.390521 CTGAGGCTACCGGTGGCA 61.391 66.667 38.89 21.45 38.96 4.92
2468 2523 3.798511 GGGGGCACTGAGGCTACC 61.799 72.222 0.00 0.00 43.56 3.18
2475 2530 4.664267 AGCTCCTGGGGGCACTGA 62.664 66.667 14.38 0.00 0.00 3.41
2483 2538 3.554342 CCGGATGGAGCTCCTGGG 61.554 72.222 32.28 22.36 37.49 4.45
2492 2547 2.582436 GTTCTTCGGCCGGATGGA 59.418 61.111 27.83 8.59 37.49 3.41
2500 2555 1.345176 CTCATTCGCGTTCTTCGGC 59.655 57.895 5.77 0.00 40.26 5.54
2501 2556 1.345176 GCTCATTCGCGTTCTTCGG 59.655 57.895 5.77 0.00 40.26 4.30
2502 2557 4.934144 GCTCATTCGCGTTCTTCG 57.066 55.556 5.77 0.00 43.12 3.79
2515 2576 4.147449 CCATCGTGGCTCCGCTCA 62.147 66.667 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.