Multiple sequence alignment - TraesCS3B01G519500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G519500 chr3B 100.000 4009 0 0 1 4009 762801349 762805357 0.000000e+00 7404.0
1 TraesCS3B01G519500 chr3B 77.862 2114 396 38 952 3013 776863314 776865407 0.000000e+00 1245.0
2 TraesCS3B01G519500 chr3D 92.793 2886 174 18 882 3750 573402420 573405288 0.000000e+00 4146.0
3 TraesCS3B01G519500 chr3D 78.571 2072 369 46 952 2970 581507695 581505646 0.000000e+00 1297.0
4 TraesCS3B01G519500 chr3D 77.545 2004 363 45 1113 3065 581458798 581456831 0.000000e+00 1127.0
5 TraesCS3B01G519500 chr3D 90.529 454 17 13 462 898 573401964 573402408 9.660000e-161 577.0
6 TraesCS3B01G519500 chr3D 90.795 239 20 2 3771 4009 573405559 573405795 6.470000e-83 318.0
7 TraesCS3B01G519500 chr3D 87.356 261 27 5 1 257 1251651 1251909 1.090000e-75 294.0
8 TraesCS3B01G519500 chr3A 90.976 1086 81 9 2442 3513 707997251 707998333 0.000000e+00 1447.0
9 TraesCS3B01G519500 chr3A 77.000 2000 371 56 1036 2974 716597695 716599666 0.000000e+00 1062.0
10 TraesCS3B01G519500 chr3A 79.512 615 106 13 2366 2970 716566751 716567355 1.720000e-113 420.0
11 TraesCS3B01G519500 chr3A 89.958 239 21 3 3771 4009 707998749 707998984 5.030000e-79 305.0
12 TraesCS3B01G519500 chr3A 87.162 148 19 0 3604 3751 707998353 707998500 6.890000e-38 169.0
13 TraesCS3B01G519500 chr2B 80.069 1164 194 27 1835 2972 26573082 26571931 0.000000e+00 830.0
14 TraesCS3B01G519500 chr2B 83.333 78 4 8 403 479 785825499 785825430 3.340000e-06 63.9
15 TraesCS3B01G519500 chr2B 92.857 42 0 2 403 444 54771653 54771691 1.560000e-04 58.4
16 TraesCS3B01G519500 chr2A 79.932 1181 194 26 1823 2972 16870847 16869679 0.000000e+00 828.0
17 TraesCS3B01G519500 chr2A 89.796 49 1 4 403 450 191432270 191432315 4.330000e-05 60.2
18 TraesCS3B01G519500 chr2D 79.899 1184 191 27 1823 2970 14777368 14776196 0.000000e+00 824.0
19 TraesCS3B01G519500 chr7B 90.604 447 29 7 2 444 579080796 579081233 7.470000e-162 580.0
20 TraesCS3B01G519500 chr6A 80.976 205 28 8 242 444 87237709 87237514 6.940000e-33 152.0
21 TraesCS3B01G519500 chr6A 93.023 43 0 2 402 444 251584203 251584242 4.330000e-05 60.2
22 TraesCS3B01G519500 chr4A 83.077 130 15 4 340 468 585694750 585694873 1.180000e-20 111.0
23 TraesCS3B01G519500 chr1A 90.196 51 0 4 403 451 392367524 392367477 1.200000e-05 62.1
24 TraesCS3B01G519500 chr4B 89.796 49 1 3 403 450 639560198 639560153 4.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G519500 chr3B 762801349 762805357 4008 False 7404.000000 7404 100.000000 1 4009 1 chr3B.!!$F1 4008
1 TraesCS3B01G519500 chr3B 776863314 776865407 2093 False 1245.000000 1245 77.862000 952 3013 1 chr3B.!!$F2 2061
2 TraesCS3B01G519500 chr3D 573401964 573405795 3831 False 1680.333333 4146 91.372333 462 4009 3 chr3D.!!$F2 3547
3 TraesCS3B01G519500 chr3D 581505646 581507695 2049 True 1297.000000 1297 78.571000 952 2970 1 chr3D.!!$R2 2018
4 TraesCS3B01G519500 chr3D 581456831 581458798 1967 True 1127.000000 1127 77.545000 1113 3065 1 chr3D.!!$R1 1952
5 TraesCS3B01G519500 chr3A 716597695 716599666 1971 False 1062.000000 1062 77.000000 1036 2974 1 chr3A.!!$F2 1938
6 TraesCS3B01G519500 chr3A 707997251 707998984 1733 False 640.333333 1447 89.365333 2442 4009 3 chr3A.!!$F3 1567
7 TraesCS3B01G519500 chr3A 716566751 716567355 604 False 420.000000 420 79.512000 2366 2970 1 chr3A.!!$F1 604
8 TraesCS3B01G519500 chr2B 26571931 26573082 1151 True 830.000000 830 80.069000 1835 2972 1 chr2B.!!$R1 1137
9 TraesCS3B01G519500 chr2A 16869679 16870847 1168 True 828.000000 828 79.932000 1823 2972 1 chr2A.!!$R1 1149
10 TraesCS3B01G519500 chr2D 14776196 14777368 1172 True 824.000000 824 79.899000 1823 2970 1 chr2D.!!$R1 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.035439 ATAAAGATATGGGCCGGCCG 60.035 55.0 38.22 21.04 36.85 6.13 F
210 211 0.037160 GGCACGGTTTCCTTCCCTTA 59.963 55.0 0.00 0.00 0.00 2.69 F
404 405 0.040692 GGGACGAAACAAAGCGGAAC 60.041 55.0 0.00 0.00 0.00 3.62 F
405 406 0.040692 GGACGAAACAAAGCGGAACC 60.041 55.0 0.00 0.00 0.00 3.62 F
2009 2115 0.035458 AGCTTGGTCAAGGAGGTTCG 59.965 55.0 12.02 0.00 38.80 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 1167 0.313987 CGTAGTATGCATCGCCCTCA 59.686 55.000 0.19 0.00 0.00 3.86 R
1167 1224 0.326927 TTTGGATGTTCGGACTCCCC 59.673 55.000 9.14 2.25 0.00 4.81 R
1781 1854 0.392998 AAATCTTCCGTGCAGGCGAT 60.393 50.000 0.00 0.00 40.77 4.58 R
2185 2297 3.126858 CCACCAACATATGAACTCAACCG 59.873 47.826 10.38 0.00 0.00 4.44 R
3884 4298 0.035056 ACGGGCTCCTCAATTCCTTG 60.035 55.000 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.996976 GCATCGATGGCTCCGTAT 57.003 55.556 26.00 0.00 0.00 3.06
21 22 3.217242 GCATCGATGGCTCCGTATT 57.783 52.632 26.00 0.00 0.00 1.89
22 23 0.792640 GCATCGATGGCTCCGTATTG 59.207 55.000 26.00 0.00 0.00 1.90
23 24 1.432514 CATCGATGGCTCCGTATTGG 58.567 55.000 17.96 0.00 40.09 3.16
45 46 5.123805 GAGTAATTCTCCTACACGGATCC 57.876 47.826 0.00 0.00 42.12 3.36
46 47 3.568853 AGTAATTCTCCTACACGGATCCG 59.431 47.826 32.20 32.20 42.12 4.18
47 48 2.359981 ATTCTCCTACACGGATCCGA 57.640 50.000 39.55 17.49 42.12 4.55
48 49 2.359981 TTCTCCTACACGGATCCGAT 57.640 50.000 39.55 27.36 42.12 4.18
49 50 1.893544 TCTCCTACACGGATCCGATC 58.106 55.000 39.55 0.00 42.12 3.69
50 51 0.517755 CTCCTACACGGATCCGATCG 59.482 60.000 39.55 26.97 42.12 3.69
51 52 0.107268 TCCTACACGGATCCGATCGA 59.893 55.000 39.55 22.17 42.83 3.59
52 53 0.949397 CCTACACGGATCCGATCGAA 59.051 55.000 39.55 18.09 42.83 3.71
53 54 1.335810 CCTACACGGATCCGATCGAAA 59.664 52.381 39.55 16.76 42.83 3.46
54 55 2.223641 CCTACACGGATCCGATCGAAAA 60.224 50.000 39.55 15.76 42.83 2.29
55 56 1.636988 ACACGGATCCGATCGAAAAC 58.363 50.000 39.55 2.89 42.83 2.43
56 57 0.570734 CACGGATCCGATCGAAAACG 59.429 55.000 39.55 17.28 42.83 3.60
63 64 1.700029 CGATCGAAAACGGACACGG 59.300 57.895 10.26 0.00 46.48 4.94
64 65 1.418755 GATCGAAAACGGACACGGC 59.581 57.895 0.00 0.00 46.48 5.68
65 66 2.274834 GATCGAAAACGGACACGGCG 62.275 60.000 4.80 4.80 46.48 6.46
66 67 4.712873 CGAAAACGGACACGGCGC 62.713 66.667 6.90 0.00 46.48 6.53
67 68 3.343421 GAAAACGGACACGGCGCT 61.343 61.111 6.90 0.00 46.48 5.92
68 69 3.573489 GAAAACGGACACGGCGCTG 62.573 63.158 16.39 16.39 46.48 5.18
74 75 4.373116 GACACGGCGCTGGAGGAA 62.373 66.667 22.44 0.00 0.00 3.36
75 76 4.379243 ACACGGCGCTGGAGGAAG 62.379 66.667 22.44 5.41 0.00 3.46
113 114 4.388080 CACACGCCGTGCACCATG 62.388 66.667 18.59 3.54 39.19 3.66
123 124 3.490890 GCACCATGCGTTCTCTCC 58.509 61.111 0.00 0.00 31.71 3.71
124 125 1.078848 GCACCATGCGTTCTCTCCT 60.079 57.895 0.00 0.00 31.71 3.69
125 126 1.086634 GCACCATGCGTTCTCTCCTC 61.087 60.000 0.00 0.00 31.71 3.71
126 127 0.803768 CACCATGCGTTCTCTCCTCG 60.804 60.000 0.00 0.00 0.00 4.63
127 128 1.227089 CCATGCGTTCTCTCCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
128 129 1.667154 CCATGCGTTCTCTCCTCGGA 61.667 60.000 0.00 0.00 0.00 4.55
129 130 0.526524 CATGCGTTCTCTCCTCGGAC 60.527 60.000 0.00 0.00 0.00 4.79
130 131 1.994507 ATGCGTTCTCTCCTCGGACG 61.995 60.000 0.00 0.00 0.00 4.79
131 132 2.396955 GCGTTCTCTCCTCGGACGA 61.397 63.158 0.00 0.00 0.00 4.20
132 133 1.716760 CGTTCTCTCCTCGGACGAG 59.283 63.158 14.39 14.39 41.63 4.18
133 134 1.430228 GTTCTCTCCTCGGACGAGC 59.570 63.158 15.78 0.00 40.69 5.03
134 135 2.107292 TTCTCTCCTCGGACGAGCG 61.107 63.158 15.78 9.51 40.69 5.03
135 136 2.511829 CTCTCCTCGGACGAGCGA 60.512 66.667 15.78 12.86 40.69 4.93
136 137 1.890041 CTCTCCTCGGACGAGCGAT 60.890 63.158 15.78 0.00 40.69 4.58
137 138 2.111932 CTCTCCTCGGACGAGCGATG 62.112 65.000 15.78 3.09 40.69 3.84
138 139 2.124860 TCCTCGGACGAGCGATGA 60.125 61.111 15.78 5.39 40.69 2.92
139 140 1.715862 CTCCTCGGACGAGCGATGAA 61.716 60.000 15.78 0.00 40.69 2.57
140 141 1.298713 CCTCGGACGAGCGATGAAG 60.299 63.158 15.78 0.00 40.69 3.02
141 142 1.941734 CTCGGACGAGCGATGAAGC 60.942 63.158 8.93 0.00 35.31 3.86
142 143 3.315521 CGGACGAGCGATGAAGCG 61.316 66.667 0.00 0.00 43.00 4.68
143 144 2.202623 GGACGAGCGATGAAGCGT 60.203 61.111 0.00 0.00 43.00 5.07
144 145 3.290619 GACGAGCGATGAAGCGTC 58.709 61.111 0.00 0.00 44.83 5.19
145 146 2.202623 ACGAGCGATGAAGCGTCC 60.203 61.111 0.00 0.00 43.00 4.79
146 147 2.103143 CGAGCGATGAAGCGTCCT 59.897 61.111 0.00 0.00 43.00 3.85
147 148 1.355563 CGAGCGATGAAGCGTCCTA 59.644 57.895 0.00 0.00 43.00 2.94
148 149 0.930742 CGAGCGATGAAGCGTCCTAC 60.931 60.000 0.00 0.00 43.00 3.18
149 150 0.595310 GAGCGATGAAGCGTCCTACC 60.595 60.000 0.00 0.00 43.00 3.18
150 151 1.944676 GCGATGAAGCGTCCTACCG 60.945 63.158 0.00 0.00 0.00 4.02
159 160 3.210857 CGTCCTACCGCAATATGGG 57.789 57.895 0.00 0.00 0.00 4.00
160 161 0.949105 CGTCCTACCGCAATATGGGC 60.949 60.000 0.00 0.00 0.00 5.36
161 162 0.396811 GTCCTACCGCAATATGGGCT 59.603 55.000 0.00 0.00 0.00 5.19
162 163 0.396435 TCCTACCGCAATATGGGCTG 59.604 55.000 0.00 0.00 0.00 4.85
163 164 0.606401 CCTACCGCAATATGGGCTGG 60.606 60.000 8.12 8.12 0.00 4.85
164 165 1.228124 TACCGCAATATGGGCTGGC 60.228 57.895 0.00 0.00 0.00 4.85
165 166 1.988982 TACCGCAATATGGGCTGGCA 61.989 55.000 2.88 0.00 0.00 4.92
166 167 2.126596 CCGCAATATGGGCTGGCAA 61.127 57.895 2.88 0.00 0.00 4.52
167 168 1.066257 CGCAATATGGGCTGGCAAC 59.934 57.895 2.88 0.00 0.00 4.17
168 169 1.386525 CGCAATATGGGCTGGCAACT 61.387 55.000 2.88 0.00 37.61 3.16
169 170 1.691196 GCAATATGGGCTGGCAACTA 58.309 50.000 2.88 0.00 37.61 2.24
170 171 2.031120 GCAATATGGGCTGGCAACTAA 58.969 47.619 2.88 0.00 37.61 2.24
171 172 2.430332 GCAATATGGGCTGGCAACTAAA 59.570 45.455 2.88 0.00 37.61 1.85
172 173 3.118811 GCAATATGGGCTGGCAACTAAAA 60.119 43.478 2.88 0.00 37.61 1.52
173 174 4.443315 GCAATATGGGCTGGCAACTAAAAT 60.443 41.667 2.88 0.00 37.61 1.82
174 175 5.221422 GCAATATGGGCTGGCAACTAAAATA 60.221 40.000 2.88 0.00 37.61 1.40
175 176 6.685116 GCAATATGGGCTGGCAACTAAAATAA 60.685 38.462 2.88 0.00 37.61 1.40
176 177 7.271511 CAATATGGGCTGGCAACTAAAATAAA 58.728 34.615 2.88 0.00 37.61 1.40
177 178 4.799564 TGGGCTGGCAACTAAAATAAAG 57.200 40.909 2.88 0.00 37.61 1.85
178 179 4.411927 TGGGCTGGCAACTAAAATAAAGA 58.588 39.130 2.88 0.00 37.61 2.52
179 180 5.022787 TGGGCTGGCAACTAAAATAAAGAT 58.977 37.500 2.88 0.00 37.61 2.40
180 181 6.191315 TGGGCTGGCAACTAAAATAAAGATA 58.809 36.000 2.88 0.00 37.61 1.98
181 182 6.838612 TGGGCTGGCAACTAAAATAAAGATAT 59.161 34.615 2.88 0.00 37.61 1.63
182 183 7.147976 GGGCTGGCAACTAAAATAAAGATATG 58.852 38.462 2.88 0.00 37.61 1.78
183 184 7.147976 GGCTGGCAACTAAAATAAAGATATGG 58.852 38.462 0.00 0.00 37.61 2.74
184 185 7.147976 GCTGGCAACTAAAATAAAGATATGGG 58.852 38.462 0.00 0.00 37.61 4.00
185 186 7.049799 TGGCAACTAAAATAAAGATATGGGC 57.950 36.000 0.00 0.00 37.61 5.36
186 187 6.041523 TGGCAACTAAAATAAAGATATGGGCC 59.958 38.462 0.00 0.00 37.61 5.80
187 188 6.149633 GCAACTAAAATAAAGATATGGGCCG 58.850 40.000 0.00 0.00 0.00 6.13
188 189 6.677913 CAACTAAAATAAAGATATGGGCCGG 58.322 40.000 0.00 0.00 0.00 6.13
189 190 4.765339 ACTAAAATAAAGATATGGGCCGGC 59.235 41.667 21.18 21.18 0.00 6.13
190 191 2.215942 AATAAAGATATGGGCCGGCC 57.784 50.000 38.57 38.57 0.00 6.13
191 192 0.035439 ATAAAGATATGGGCCGGCCG 60.035 55.000 38.22 21.04 36.85 6.13
192 193 2.119484 TAAAGATATGGGCCGGCCGG 62.119 60.000 40.26 40.26 36.85 6.13
208 209 2.434774 GGCACGGTTTCCTTCCCT 59.565 61.111 0.00 0.00 0.00 4.20
209 210 1.228459 GGCACGGTTTCCTTCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
210 211 0.037160 GGCACGGTTTCCTTCCCTTA 59.963 55.000 0.00 0.00 0.00 2.69
211 212 1.546099 GGCACGGTTTCCTTCCCTTAA 60.546 52.381 0.00 0.00 0.00 1.85
212 213 1.538512 GCACGGTTTCCTTCCCTTAAC 59.461 52.381 0.00 0.00 0.00 2.01
213 214 1.802365 CACGGTTTCCTTCCCTTAACG 59.198 52.381 0.00 0.00 0.00 3.18
214 215 1.417517 ACGGTTTCCTTCCCTTAACGT 59.582 47.619 0.00 0.00 0.00 3.99
215 216 2.632512 ACGGTTTCCTTCCCTTAACGTA 59.367 45.455 0.00 0.00 0.00 3.57
216 217 2.995939 CGGTTTCCTTCCCTTAACGTAC 59.004 50.000 0.00 0.00 0.00 3.67
217 218 2.995939 GGTTTCCTTCCCTTAACGTACG 59.004 50.000 15.01 15.01 0.00 3.67
218 219 3.554960 GGTTTCCTTCCCTTAACGTACGT 60.555 47.826 16.72 16.72 0.00 3.57
219 220 3.575965 TTCCTTCCCTTAACGTACGTC 57.424 47.619 23.05 0.00 0.00 4.34
220 221 1.468520 TCCTTCCCTTAACGTACGTCG 59.531 52.381 23.05 12.82 46.00 5.12
232 233 3.758521 CGTACGTCGTTGCTTAGTTTT 57.241 42.857 7.22 0.00 34.52 2.43
233 234 4.106288 CGTACGTCGTTGCTTAGTTTTT 57.894 40.909 7.22 0.00 34.52 1.94
251 252 2.886862 TTTGTTTCCTGTGCATGTGG 57.113 45.000 0.00 0.00 0.00 4.17
252 253 1.039068 TTGTTTCCTGTGCATGTGGG 58.961 50.000 0.00 0.00 0.00 4.61
253 254 1.290009 GTTTCCTGTGCATGTGGGC 59.710 57.895 0.00 0.00 0.00 5.36
254 255 1.907807 TTTCCTGTGCATGTGGGCC 60.908 57.895 0.00 0.00 0.00 5.80
255 256 4.720902 TCCTGTGCATGTGGGCCG 62.721 66.667 0.00 0.00 0.00 6.13
272 273 3.643398 GGCTGTCCCGGTATCCTT 58.357 61.111 0.00 0.00 0.00 3.36
273 274 1.912971 GGCTGTCCCGGTATCCTTT 59.087 57.895 0.00 0.00 0.00 3.11
274 275 0.463833 GGCTGTCCCGGTATCCTTTG 60.464 60.000 0.00 0.00 0.00 2.77
275 276 0.252197 GCTGTCCCGGTATCCTTTGT 59.748 55.000 0.00 0.00 0.00 2.83
276 277 1.483415 GCTGTCCCGGTATCCTTTGTA 59.517 52.381 0.00 0.00 0.00 2.41
277 278 2.740904 GCTGTCCCGGTATCCTTTGTAC 60.741 54.545 0.00 0.00 0.00 2.90
278 279 1.477700 TGTCCCGGTATCCTTTGTACG 59.522 52.381 0.00 0.00 0.00 3.67
279 280 1.478105 GTCCCGGTATCCTTTGTACGT 59.522 52.381 0.00 0.00 0.00 3.57
280 281 2.687935 GTCCCGGTATCCTTTGTACGTA 59.312 50.000 0.00 0.00 0.00 3.57
281 282 2.687935 TCCCGGTATCCTTTGTACGTAC 59.312 50.000 18.90 18.90 0.00 3.67
282 283 2.541588 CCCGGTATCCTTTGTACGTACG 60.542 54.545 20.18 15.01 0.00 3.67
283 284 2.097466 CCGGTATCCTTTGTACGTACGT 59.903 50.000 25.98 25.98 0.00 3.57
284 285 3.427503 CCGGTATCCTTTGTACGTACGTT 60.428 47.826 27.92 10.83 0.00 3.99
285 286 3.786048 CGGTATCCTTTGTACGTACGTTC 59.214 47.826 27.92 21.97 0.00 3.95
286 287 4.437390 CGGTATCCTTTGTACGTACGTTCT 60.437 45.833 27.92 3.84 0.00 3.01
287 288 5.030936 GGTATCCTTTGTACGTACGTTCTC 58.969 45.833 27.92 17.00 0.00 2.87
288 289 5.163713 GGTATCCTTTGTACGTACGTTCTCT 60.164 44.000 27.92 2.98 0.00 3.10
289 290 4.151258 TCCTTTGTACGTACGTTCTCTG 57.849 45.455 27.92 13.81 0.00 3.35
290 291 2.660236 CCTTTGTACGTACGTTCTCTGC 59.340 50.000 27.92 5.01 0.00 4.26
291 292 3.562505 CTTTGTACGTACGTTCTCTGCT 58.437 45.455 27.92 0.45 0.00 4.24
292 293 2.888513 TGTACGTACGTTCTCTGCTC 57.111 50.000 27.92 7.70 0.00 4.26
293 294 2.420642 TGTACGTACGTTCTCTGCTCT 58.579 47.619 27.92 0.00 0.00 4.09
294 295 2.159037 TGTACGTACGTTCTCTGCTCTG 59.841 50.000 27.92 0.00 0.00 3.35
295 296 0.109689 ACGTACGTTCTCTGCTCTGC 60.110 55.000 16.72 0.00 0.00 4.26
296 297 0.169230 CGTACGTTCTCTGCTCTGCT 59.831 55.000 7.22 0.00 0.00 4.24
297 298 1.792273 CGTACGTTCTCTGCTCTGCTC 60.792 57.143 7.22 0.00 0.00 4.26
298 299 1.470890 GTACGTTCTCTGCTCTGCTCT 59.529 52.381 0.00 0.00 0.00 4.09
299 300 0.965439 ACGTTCTCTGCTCTGCTCTT 59.035 50.000 0.00 0.00 0.00 2.85
300 301 1.342819 ACGTTCTCTGCTCTGCTCTTT 59.657 47.619 0.00 0.00 0.00 2.52
301 302 1.725706 CGTTCTCTGCTCTGCTCTTTG 59.274 52.381 0.00 0.00 0.00 2.77
302 303 2.765122 GTTCTCTGCTCTGCTCTTTGT 58.235 47.619 0.00 0.00 0.00 2.83
303 304 3.137533 GTTCTCTGCTCTGCTCTTTGTT 58.862 45.455 0.00 0.00 0.00 2.83
304 305 3.482156 TCTCTGCTCTGCTCTTTGTTT 57.518 42.857 0.00 0.00 0.00 2.83
305 306 3.397482 TCTCTGCTCTGCTCTTTGTTTC 58.603 45.455 0.00 0.00 0.00 2.78
306 307 3.070734 TCTCTGCTCTGCTCTTTGTTTCT 59.929 43.478 0.00 0.00 0.00 2.52
307 308 4.281941 TCTCTGCTCTGCTCTTTGTTTCTA 59.718 41.667 0.00 0.00 0.00 2.10
308 309 4.564041 TCTGCTCTGCTCTTTGTTTCTAG 58.436 43.478 0.00 0.00 0.00 2.43
309 310 4.039730 TCTGCTCTGCTCTTTGTTTCTAGT 59.960 41.667 0.00 0.00 0.00 2.57
310 311 4.708177 TGCTCTGCTCTTTGTTTCTAGTT 58.292 39.130 0.00 0.00 0.00 2.24
311 312 5.126067 TGCTCTGCTCTTTGTTTCTAGTTT 58.874 37.500 0.00 0.00 0.00 2.66
312 313 5.237344 TGCTCTGCTCTTTGTTTCTAGTTTC 59.763 40.000 0.00 0.00 0.00 2.78
313 314 5.334491 GCTCTGCTCTTTGTTTCTAGTTTCC 60.334 44.000 0.00 0.00 0.00 3.13
314 315 5.930135 TCTGCTCTTTGTTTCTAGTTTCCT 58.070 37.500 0.00 0.00 0.00 3.36
315 316 6.357367 TCTGCTCTTTGTTTCTAGTTTCCTT 58.643 36.000 0.00 0.00 0.00 3.36
316 317 6.260936 TCTGCTCTTTGTTTCTAGTTTCCTTG 59.739 38.462 0.00 0.00 0.00 3.61
317 318 5.299279 TGCTCTTTGTTTCTAGTTTCCTTGG 59.701 40.000 0.00 0.00 0.00 3.61
318 319 5.763088 CTCTTTGTTTCTAGTTTCCTTGGC 58.237 41.667 0.00 0.00 0.00 4.52
319 320 5.197451 TCTTTGTTTCTAGTTTCCTTGGCA 58.803 37.500 0.00 0.00 0.00 4.92
320 321 4.911514 TTGTTTCTAGTTTCCTTGGCAC 57.088 40.909 0.00 0.00 0.00 5.01
321 322 2.875933 TGTTTCTAGTTTCCTTGGCACG 59.124 45.455 0.00 0.00 0.00 5.34
322 323 2.876550 GTTTCTAGTTTCCTTGGCACGT 59.123 45.455 0.00 0.00 0.00 4.49
323 324 4.060205 GTTTCTAGTTTCCTTGGCACGTA 58.940 43.478 0.00 0.00 0.00 3.57
324 325 3.308438 TCTAGTTTCCTTGGCACGTAC 57.692 47.619 0.00 0.00 0.00 3.67
325 326 2.028748 TCTAGTTTCCTTGGCACGTACC 60.029 50.000 0.00 0.00 0.00 3.34
326 327 0.763035 AGTTTCCTTGGCACGTACCT 59.237 50.000 6.34 0.00 0.00 3.08
327 328 1.154197 GTTTCCTTGGCACGTACCTC 58.846 55.000 6.34 0.00 0.00 3.85
328 329 0.759959 TTTCCTTGGCACGTACCTCA 59.240 50.000 6.34 0.00 0.00 3.86
329 330 0.981183 TTCCTTGGCACGTACCTCAT 59.019 50.000 6.34 0.00 0.00 2.90
330 331 1.855295 TCCTTGGCACGTACCTCATA 58.145 50.000 6.34 0.00 0.00 2.15
331 332 2.394632 TCCTTGGCACGTACCTCATAT 58.605 47.619 6.34 0.00 0.00 1.78
332 333 2.102420 TCCTTGGCACGTACCTCATATG 59.898 50.000 6.34 0.00 0.00 1.78
333 334 2.158957 CCTTGGCACGTACCTCATATGT 60.159 50.000 6.34 0.00 32.89 2.29
334 335 3.531538 CTTGGCACGTACCTCATATGTT 58.468 45.455 6.34 0.00 29.98 2.71
335 336 2.899976 TGGCACGTACCTCATATGTTG 58.100 47.619 6.34 0.00 29.98 3.33
336 337 2.210116 GGCACGTACCTCATATGTTGG 58.790 52.381 13.34 13.34 29.98 3.77
337 338 2.419574 GGCACGTACCTCATATGTTGGT 60.420 50.000 20.65 20.65 37.83 3.67
338 339 2.864343 GCACGTACCTCATATGTTGGTC 59.136 50.000 20.51 13.72 35.48 4.02
339 340 3.677700 GCACGTACCTCATATGTTGGTCA 60.678 47.826 20.51 9.49 35.48 4.02
340 341 4.500127 CACGTACCTCATATGTTGGTCAA 58.500 43.478 20.51 7.41 35.48 3.18
341 342 4.932799 CACGTACCTCATATGTTGGTCAAA 59.067 41.667 20.51 6.87 35.48 2.69
342 343 5.410132 CACGTACCTCATATGTTGGTCAAAA 59.590 40.000 20.51 6.59 35.48 2.44
343 344 5.410439 ACGTACCTCATATGTTGGTCAAAAC 59.590 40.000 20.51 14.39 35.48 2.43
344 345 5.410132 CGTACCTCATATGTTGGTCAAAACA 59.590 40.000 20.51 5.77 43.82 2.83
345 346 5.964958 ACCTCATATGTTGGTCAAAACAG 57.035 39.130 14.37 0.00 42.99 3.16
346 347 5.630121 ACCTCATATGTTGGTCAAAACAGA 58.370 37.500 14.37 0.00 42.99 3.41
347 348 5.473504 ACCTCATATGTTGGTCAAAACAGAC 59.526 40.000 14.37 0.00 42.99 3.51
386 387 8.980143 AATGTAGGTAAAAATCATCAAAACGG 57.020 30.769 0.00 0.00 0.00 4.44
387 388 6.915349 TGTAGGTAAAAATCATCAAAACGGG 58.085 36.000 0.00 0.00 0.00 5.28
388 389 6.715718 TGTAGGTAAAAATCATCAAAACGGGA 59.284 34.615 0.00 0.00 0.00 5.14
389 390 6.020971 AGGTAAAAATCATCAAAACGGGAC 57.979 37.500 0.00 0.00 0.00 4.46
402 403 4.052519 GGGACGAAACAAAGCGGA 57.947 55.556 0.00 0.00 0.00 5.54
403 404 2.323213 GGGACGAAACAAAGCGGAA 58.677 52.632 0.00 0.00 0.00 4.30
404 405 0.040692 GGGACGAAACAAAGCGGAAC 60.041 55.000 0.00 0.00 0.00 3.62
405 406 0.040692 GGACGAAACAAAGCGGAACC 60.041 55.000 0.00 0.00 0.00 3.62
406 407 0.658897 GACGAAACAAAGCGGAACCA 59.341 50.000 0.00 0.00 0.00 3.67
407 408 1.064357 GACGAAACAAAGCGGAACCAA 59.936 47.619 0.00 0.00 0.00 3.67
408 409 1.473278 ACGAAACAAAGCGGAACCAAA 59.527 42.857 0.00 0.00 0.00 3.28
409 410 1.849829 CGAAACAAAGCGGAACCAAAC 59.150 47.619 0.00 0.00 0.00 2.93
410 411 2.198406 GAAACAAAGCGGAACCAAACC 58.802 47.619 0.00 0.00 0.00 3.27
411 412 1.187087 AACAAAGCGGAACCAAACCA 58.813 45.000 0.00 0.00 0.00 3.67
412 413 1.187087 ACAAAGCGGAACCAAACCAA 58.813 45.000 0.00 0.00 0.00 3.67
413 414 1.136110 ACAAAGCGGAACCAAACCAAG 59.864 47.619 0.00 0.00 0.00 3.61
414 415 1.407258 CAAAGCGGAACCAAACCAAGA 59.593 47.619 0.00 0.00 0.00 3.02
415 416 1.770294 AAGCGGAACCAAACCAAGAA 58.230 45.000 0.00 0.00 0.00 2.52
416 417 1.995376 AGCGGAACCAAACCAAGAAT 58.005 45.000 0.00 0.00 0.00 2.40
417 418 3.149005 AGCGGAACCAAACCAAGAATA 57.851 42.857 0.00 0.00 0.00 1.75
418 419 2.817844 AGCGGAACCAAACCAAGAATAC 59.182 45.455 0.00 0.00 0.00 1.89
419 420 2.094906 GCGGAACCAAACCAAGAATACC 60.095 50.000 0.00 0.00 0.00 2.73
420 421 3.418047 CGGAACCAAACCAAGAATACCT 58.582 45.455 0.00 0.00 0.00 3.08
421 422 4.581868 CGGAACCAAACCAAGAATACCTA 58.418 43.478 0.00 0.00 0.00 3.08
422 423 5.190677 CGGAACCAAACCAAGAATACCTAT 58.809 41.667 0.00 0.00 0.00 2.57
423 424 5.650703 CGGAACCAAACCAAGAATACCTATT 59.349 40.000 0.00 0.00 0.00 1.73
424 425 6.183360 CGGAACCAAACCAAGAATACCTATTC 60.183 42.308 0.00 0.00 41.78 1.75
524 528 3.132289 GGATACTTGGAACGTGGATCTGA 59.868 47.826 0.00 0.00 0.00 3.27
559 563 2.223900 GCAGAAAGAGGCAGCAAAAGTT 60.224 45.455 0.00 0.00 0.00 2.66
564 568 4.677673 AAGAGGCAGCAAAAGTTCAAAT 57.322 36.364 0.00 0.00 0.00 2.32
611 616 1.284982 GCGTGCACTTGACGTCAGAT 61.285 55.000 19.11 8.10 39.08 2.90
612 617 0.436150 CGTGCACTTGACGTCAGATG 59.564 55.000 19.11 20.19 32.06 2.90
627 632 5.163540 ACGTCAGATGAACATAGAGGTTACC 60.164 44.000 0.00 0.00 0.00 2.85
628 633 5.067936 CGTCAGATGAACATAGAGGTTACCT 59.932 44.000 2.34 2.34 36.03 3.08
629 634 6.262496 CGTCAGATGAACATAGAGGTTACCTA 59.738 42.308 2.88 0.00 31.76 3.08
630 635 7.201794 CGTCAGATGAACATAGAGGTTACCTAA 60.202 40.741 2.88 0.00 31.76 2.69
631 636 8.643324 GTCAGATGAACATAGAGGTTACCTAAT 58.357 37.037 2.88 0.00 31.76 1.73
632 637 8.861086 TCAGATGAACATAGAGGTTACCTAATC 58.139 37.037 2.88 0.00 31.76 1.75
633 638 8.865090 CAGATGAACATAGAGGTTACCTAATCT 58.135 37.037 2.88 0.00 31.76 2.40
634 639 9.440761 AGATGAACATAGAGGTTACCTAATCTT 57.559 33.333 2.88 0.00 31.76 2.40
635 640 9.482627 GATGAACATAGAGGTTACCTAATCTTG 57.517 37.037 2.88 1.01 31.76 3.02
636 641 8.375493 TGAACATAGAGGTTACCTAATCTTGT 57.625 34.615 2.88 1.65 31.76 3.16
646 651 7.036829 GGTTACCTAATCTTGTCTTCAGACTC 58.963 42.308 8.41 0.00 44.99 3.36
647 652 7.093684 GGTTACCTAATCTTGTCTTCAGACTCT 60.094 40.741 8.41 0.00 44.99 3.24
691 701 8.670135 GGTCAGATAGCACATAGTATAGTACTG 58.330 40.741 5.39 0.00 39.81 2.74
720 730 0.760945 CCCACCTAGGAGATTCCGCT 60.761 60.000 17.98 0.00 42.75 5.52
756 770 8.519526 TGTTGAGGTATTGTCATTTGGTTTATC 58.480 33.333 0.00 0.00 0.00 1.75
768 782 7.067129 GTCATTTGGTTTATCCTCTAACCCTTC 59.933 40.741 0.00 0.00 42.51 3.46
795 809 5.511234 TTAGCGGACATTACTAGAGGTTC 57.489 43.478 0.00 0.00 0.00 3.62
796 810 3.633418 AGCGGACATTACTAGAGGTTCT 58.367 45.455 0.00 0.00 0.00 3.01
803 817 1.772836 TACTAGAGGTTCTTCCGGCC 58.227 55.000 0.00 0.00 41.99 6.13
830 847 2.203209 GATGTGCGTGGATCCCCC 60.203 66.667 9.90 0.00 0.00 5.40
868 885 0.318955 GCTGTTCGTTTGCATTGCCT 60.319 50.000 6.12 0.00 0.00 4.75
940 985 2.413453 GAGGTGTTTGCTGACGATCTTC 59.587 50.000 0.00 0.00 0.00 2.87
975 1020 0.538977 AAATGGCTGCTGCTGTGAGT 60.539 50.000 15.64 0.00 39.59 3.41
999 1044 1.760613 TCCCGCCGAATACAGATCTTT 59.239 47.619 0.00 0.00 0.00 2.52
1012 1060 9.418045 GAATACAGATCTTTATGCTTCTCTACC 57.582 37.037 2.14 0.00 0.00 3.18
1047 1098 4.063967 CACCCGCCTCGTGCTACA 62.064 66.667 0.00 0.00 38.05 2.74
1048 1099 4.065281 ACCCGCCTCGTGCTACAC 62.065 66.667 0.00 0.00 38.05 2.90
1110 1167 5.750352 ATGATGCCCAAGATTTCAGTTTT 57.250 34.783 0.00 0.00 0.00 2.43
1167 1224 2.680913 CGAGCTGACAAAAGGCGGG 61.681 63.158 0.00 0.00 0.00 6.13
1210 1267 4.349503 TGGGCCGAGCATTGCACT 62.350 61.111 11.91 0.00 0.00 4.40
1242 1299 1.005037 GCTGTGGGATGTCGACACA 60.005 57.895 22.71 12.07 42.29 3.72
1278 1335 3.288092 GTTCACCACCTCCTTCACTTTT 58.712 45.455 0.00 0.00 0.00 2.27
1329 1392 2.105766 GATGGCTTGGCATTCTTCCTT 58.894 47.619 10.92 0.00 0.00 3.36
1332 1395 1.260544 GCTTGGCATTCTTCCTTGGT 58.739 50.000 0.00 0.00 0.00 3.67
1527 1596 2.839632 TCCATCATCTCGCGGGCT 60.840 61.111 6.13 0.00 0.00 5.19
1781 1854 6.352737 GGTCATTTAACTCTACCTTGGATCCA 60.353 42.308 11.44 11.44 0.00 3.41
2009 2115 0.035458 AGCTTGGTCAAGGAGGTTCG 59.965 55.000 12.02 0.00 38.80 3.95
2185 2297 1.072965 CTATGATGGCCAGAGGAACCC 59.927 57.143 13.05 0.00 30.70 4.11
2231 2343 2.049228 GACGAAAGGTACACACGTCTG 58.951 52.381 19.04 0.00 46.00 3.51
2340 2460 6.840780 ATGTATTTTAGTTTTGCCTCAGCT 57.159 33.333 0.00 0.00 40.80 4.24
2346 2466 3.626028 AGTTTTGCCTCAGCTTTTACG 57.374 42.857 0.00 0.00 40.80 3.18
2364 2487 3.183237 ACGTCGCTGCAACTTAATTTC 57.817 42.857 0.00 0.00 0.00 2.17
2771 2914 6.379133 TGTCGTCATGGGTAAGAAGTAAGTAT 59.621 38.462 0.00 0.00 0.00 2.12
2772 2915 6.696148 GTCGTCATGGGTAAGAAGTAAGTATG 59.304 42.308 0.00 0.00 0.00 2.39
2794 2937 1.700042 GGGAATGCGATCCTGGAGGT 61.700 60.000 1.52 0.00 39.57 3.85
2795 2938 1.048601 GGAATGCGATCCTGGAGGTA 58.951 55.000 1.52 0.00 36.50 3.08
2824 2967 4.515404 GCTGATAAACGGCGAGGT 57.485 55.556 16.62 0.00 41.21 3.85
2845 2988 2.305635 TCACTAATGGGCTTCAGCAGAA 59.694 45.455 0.30 0.00 44.36 3.02
2981 3130 3.226777 CATGACTCCCCTAGAGACGATT 58.773 50.000 0.00 0.00 46.50 3.34
3073 3224 9.794685 ATACATATATTCAAGAGCTATGTGTCG 57.205 33.333 3.75 0.00 35.34 4.35
3090 3241 3.621715 GTGTCGGGTCATAAATCACTTCC 59.378 47.826 0.00 0.00 0.00 3.46
3122 3273 3.057033 GTCTAAGCCGACTACTTTCACCA 60.057 47.826 0.00 0.00 0.00 4.17
3132 3283 0.179067 ACTTTCACCAACGCCGAGAA 60.179 50.000 0.00 0.00 0.00 2.87
3166 3317 6.541111 AAAGCTCGGTAAAGACTGTTTAAG 57.459 37.500 0.00 0.00 33.26 1.85
3167 3318 3.995048 AGCTCGGTAAAGACTGTTTAAGC 59.005 43.478 0.00 0.00 33.26 3.09
3168 3319 3.744426 GCTCGGTAAAGACTGTTTAAGCA 59.256 43.478 0.00 0.00 31.46 3.91
3193 3345 2.420022 ACATGTCTCGGCAACATTAAGC 59.580 45.455 0.00 0.00 35.19 3.09
3195 3347 1.804151 TGTCTCGGCAACATTAAGCAC 59.196 47.619 0.00 0.00 0.00 4.40
3201 3353 1.665735 GGCAACATTAAGCACACGGTG 60.666 52.381 6.58 6.58 36.51 4.94
3217 3369 0.548510 GGTGGAGATAGGCCTTTGCT 59.451 55.000 12.58 5.90 37.74 3.91
3293 3445 1.139095 CGAGACCTAAGGACACGGC 59.861 63.158 0.00 0.00 30.13 5.68
3313 3465 2.034066 CAAGGGGACACGTGGCAT 59.966 61.111 25.47 5.31 0.00 4.40
3315 3467 2.829384 AAGGGGACACGTGGCATGT 61.829 57.895 25.47 6.51 0.00 3.21
3331 3484 4.659874 GTGCGTTGGCGTTGACGG 62.660 66.667 5.62 0.00 44.10 4.79
3340 3493 2.740714 GCGTTGACGGCTCCATGAC 61.741 63.158 5.62 0.00 40.23 3.06
3341 3494 1.079819 CGTTGACGGCTCCATGACT 60.080 57.895 0.00 0.00 35.37 3.41
3364 3517 2.818274 CGCCCTTTGCCGAGTACC 60.818 66.667 0.00 0.00 36.24 3.34
3374 3528 0.322187 GCCGAGTACCCCATTGTTGT 60.322 55.000 0.00 0.00 0.00 3.32
3401 3555 3.550842 CGGCAAAGAGTCCTTCCTTTTTG 60.551 47.826 0.00 0.00 38.74 2.44
3403 3557 4.499865 GGCAAAGAGTCCTTCCTTTTTGTC 60.500 45.833 0.00 0.00 38.27 3.18
3481 3644 4.440525 CCATTGCATAGGTTCAACCACATC 60.441 45.833 9.90 0.00 41.95 3.06
3503 3666 2.303600 ACGCCACTTCATACAACCCTAA 59.696 45.455 0.00 0.00 0.00 2.69
3506 3669 3.622455 GCCACTTCATACAACCCTAAGCT 60.622 47.826 0.00 0.00 0.00 3.74
3512 3675 2.530958 TACAACCCTAAGCTGCCGCC 62.531 60.000 0.00 0.00 36.60 6.13
3515 3678 4.554036 CCCTAAGCTGCCGCCTCC 62.554 72.222 0.00 0.00 36.60 4.30
3516 3679 4.899239 CCTAAGCTGCCGCCTCCG 62.899 72.222 0.00 0.00 36.60 4.63
3529 3692 0.591659 GCCTCCGCCCGAATTATTTC 59.408 55.000 0.00 0.00 0.00 2.17
3530 3693 1.235724 CCTCCGCCCGAATTATTTCC 58.764 55.000 0.00 0.00 0.00 3.13
3546 3709 1.192146 TTCCTCCCTGTCACCTTCCG 61.192 60.000 0.00 0.00 0.00 4.30
3549 3712 3.636231 CCCTGTCACCTTCCGCCA 61.636 66.667 0.00 0.00 0.00 5.69
3550 3713 2.429930 CCTGTCACCTTCCGCCAA 59.570 61.111 0.00 0.00 0.00 4.52
3554 3717 4.243008 TCACCTTCCGCCAACGCA 62.243 61.111 0.00 0.00 38.22 5.24
3575 3738 0.179070 TTTGTCACGCTGTACTGCCA 60.179 50.000 17.86 8.02 0.00 4.92
3578 3741 3.112075 CACGCTGTACTGCCACCG 61.112 66.667 17.86 7.37 0.00 4.94
3581 3744 4.697756 GCTGTACTGCCACCGCCA 62.698 66.667 13.37 0.00 0.00 5.69
3582 3745 2.742372 CTGTACTGCCACCGCCAC 60.742 66.667 0.00 0.00 0.00 5.01
3583 3746 4.323477 TGTACTGCCACCGCCACC 62.323 66.667 0.00 0.00 0.00 4.61
3598 3761 4.681978 ACCGCCGCTTCTCCACAC 62.682 66.667 0.00 0.00 0.00 3.82
3602 3765 2.579201 CCGCTTCTCCACACCGAT 59.421 61.111 0.00 0.00 0.00 4.18
3624 3787 3.113514 TTGCCGCTTCTCCACACCA 62.114 57.895 0.00 0.00 0.00 4.17
3625 3788 2.743928 GCCGCTTCTCCACACCAG 60.744 66.667 0.00 0.00 0.00 4.00
3628 3791 2.431683 GCTTCTCCACACCAGCCA 59.568 61.111 0.00 0.00 0.00 4.75
3629 3792 1.001641 GCTTCTCCACACCAGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
3637 3800 1.615116 CCACACCAGCCATCTTGTGAT 60.615 52.381 2.17 0.00 41.61 3.06
3642 3805 1.754803 CCAGCCATCTTGTGATGCAAT 59.245 47.619 0.00 0.00 46.43 3.56
3645 3808 2.829720 AGCCATCTTGTGATGCAATTGT 59.170 40.909 7.40 0.00 46.43 2.71
3647 3810 3.615592 GCCATCTTGTGATGCAATTGTGT 60.616 43.478 7.40 0.00 46.43 3.72
3669 3832 0.108945 CCCGTTACTCCGTTGGACTC 60.109 60.000 0.00 0.00 0.00 3.36
3670 3833 0.599558 CCGTTACTCCGTTGGACTCA 59.400 55.000 0.00 0.00 0.00 3.41
3706 3869 5.430886 CACACAAAGGAGTCCATCATATGA 58.569 41.667 12.86 8.10 0.00 2.15
3710 3873 5.426509 ACAAAGGAGTCCATCATATGAGACA 59.573 40.000 20.97 2.87 34.78 3.41
3751 3914 1.066002 CTGTCCGCCTGCAATATTTGG 59.934 52.381 0.00 0.00 0.00 3.28
3752 3915 1.340502 TGTCCGCCTGCAATATTTGGA 60.341 47.619 0.00 0.00 0.00 3.53
3754 3917 2.165437 GTCCGCCTGCAATATTTGGAAA 59.835 45.455 0.00 0.00 0.00 3.13
3755 3918 3.030291 TCCGCCTGCAATATTTGGAAAT 58.970 40.909 0.00 0.00 0.00 2.17
3756 3919 4.037446 GTCCGCCTGCAATATTTGGAAATA 59.963 41.667 0.00 0.00 35.52 1.40
3758 3921 6.007076 TCCGCCTGCAATATTTGGAAATATA 58.993 36.000 5.28 0.00 39.89 0.86
3759 3922 6.663093 TCCGCCTGCAATATTTGGAAATATAT 59.337 34.615 5.28 0.00 39.89 0.86
3760 3923 6.974622 CCGCCTGCAATATTTGGAAATATATC 59.025 38.462 5.28 2.39 39.89 1.63
3761 3924 7.362834 CCGCCTGCAATATTTGGAAATATATCA 60.363 37.037 5.28 5.87 39.89 2.15
3762 3925 8.192774 CGCCTGCAATATTTGGAAATATATCAT 58.807 33.333 5.28 0.00 39.89 2.45
3763 3926 9.880157 GCCTGCAATATTTGGAAATATATCATT 57.120 29.630 5.28 0.00 39.89 2.57
3781 4195 6.755542 ATCATTTCCTGGGTTTTGGTAAAA 57.244 33.333 0.00 0.00 0.00 1.52
3789 4203 5.762711 CCTGGGTTTTGGTAAAAATTTGAGG 59.237 40.000 0.00 0.00 37.59 3.86
3810 4224 3.636764 GGGTGTTCCACAAAAGACAGATT 59.363 43.478 0.00 0.00 35.86 2.40
3828 4242 4.043596 AGATTGGAGGCCTCATAGAAACT 58.956 43.478 33.29 19.17 0.00 2.66
3834 4248 2.431057 AGGCCTCATAGAAACTACACCG 59.569 50.000 0.00 0.00 0.00 4.94
3838 4252 4.673441 CCTCATAGAAACTACACCGTCTG 58.327 47.826 0.00 0.00 0.00 3.51
3854 4268 3.181453 CCGTCTGTGAGGTAGGATCTAGA 60.181 52.174 0.00 0.00 0.00 2.43
3855 4269 4.062293 CGTCTGTGAGGTAGGATCTAGAG 58.938 52.174 0.00 0.00 0.00 2.43
3857 4271 5.061179 GTCTGTGAGGTAGGATCTAGAGTC 58.939 50.000 0.00 0.00 0.00 3.36
3859 4273 3.786450 TGTGAGGTAGGATCTAGAGTCCA 59.214 47.826 17.98 6.61 38.25 4.02
3875 4289 8.053355 TCTAGAGTCCAATAGAGAACATGTACA 58.947 37.037 0.00 0.00 0.00 2.90
3989 4403 3.764466 CGAAGGCTCCAGCGACCT 61.764 66.667 0.00 0.00 43.26 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.996434 CGGAGCCATCGATGCCCC 62.996 72.222 20.25 17.06 0.00 5.80
4 5 1.000843 TCCAATACGGAGCCATCGATG 59.999 52.381 18.76 18.76 39.64 3.84
5 6 1.338107 TCCAATACGGAGCCATCGAT 58.662 50.000 0.00 0.00 39.64 3.59
6 7 2.815384 TCCAATACGGAGCCATCGA 58.185 52.632 0.00 0.00 39.64 3.59
33 34 0.949397 TTCGATCGGATCCGTGTAGG 59.051 55.000 32.15 18.01 40.74 3.18
34 35 2.768833 TTTCGATCGGATCCGTGTAG 57.231 50.000 32.15 21.31 40.74 2.74
35 36 2.801063 GTTTTCGATCGGATCCGTGTA 58.199 47.619 32.15 15.34 40.74 2.90
36 37 1.636988 GTTTTCGATCGGATCCGTGT 58.363 50.000 32.15 22.24 40.74 4.49
49 50 4.712873 GCGCCGTGTCCGTTTTCG 62.713 66.667 0.00 0.00 43.67 3.46
50 51 3.343421 AGCGCCGTGTCCGTTTTC 61.343 61.111 2.29 0.00 0.00 2.29
51 52 3.645975 CAGCGCCGTGTCCGTTTT 61.646 61.111 2.29 0.00 0.00 2.43
57 58 4.373116 TTCCTCCAGCGCCGTGTC 62.373 66.667 2.29 0.00 0.00 3.67
58 59 4.379243 CTTCCTCCAGCGCCGTGT 62.379 66.667 2.29 0.00 0.00 4.49
101 102 4.759096 GAACGCATGGTGCACGGC 62.759 66.667 11.45 13.30 45.36 5.68
102 103 3.027170 GAGAACGCATGGTGCACGG 62.027 63.158 11.45 4.01 45.36 4.94
103 104 1.959899 GAGAGAACGCATGGTGCACG 61.960 60.000 11.45 0.72 45.36 5.34
104 105 1.639298 GGAGAGAACGCATGGTGCAC 61.639 60.000 8.80 8.80 45.36 4.57
105 106 1.375908 GGAGAGAACGCATGGTGCA 60.376 57.895 2.63 0.00 45.36 4.57
106 107 1.078848 AGGAGAGAACGCATGGTGC 60.079 57.895 0.00 0.00 40.69 5.01
107 108 0.803768 CGAGGAGAGAACGCATGGTG 60.804 60.000 0.00 0.00 0.00 4.17
108 109 1.513158 CGAGGAGAGAACGCATGGT 59.487 57.895 0.00 0.00 0.00 3.55
109 110 1.227089 CCGAGGAGAGAACGCATGG 60.227 63.158 0.00 0.00 0.00 3.66
110 111 0.526524 GTCCGAGGAGAGAACGCATG 60.527 60.000 0.00 0.00 0.00 4.06
111 112 1.810532 GTCCGAGGAGAGAACGCAT 59.189 57.895 0.00 0.00 0.00 4.73
112 113 2.687805 CGTCCGAGGAGAGAACGCA 61.688 63.158 0.00 0.00 0.00 5.24
113 114 2.100603 CGTCCGAGGAGAGAACGC 59.899 66.667 0.00 0.00 0.00 4.84
114 115 1.716760 CTCGTCCGAGGAGAGAACG 59.283 63.158 11.93 4.04 38.51 3.95
115 116 1.430228 GCTCGTCCGAGGAGAGAAC 59.570 63.158 19.90 0.85 42.19 3.01
116 117 2.107292 CGCTCGTCCGAGGAGAGAA 61.107 63.158 19.90 0.00 42.19 2.87
117 118 2.313051 ATCGCTCGTCCGAGGAGAGA 62.313 60.000 21.67 21.67 41.63 3.10
118 119 1.890041 ATCGCTCGTCCGAGGAGAG 60.890 63.158 19.90 16.74 42.19 3.20
119 120 2.180862 CATCGCTCGTCCGAGGAGA 61.181 63.158 19.90 6.88 41.05 3.71
120 121 1.715862 TTCATCGCTCGTCCGAGGAG 61.716 60.000 17.50 12.82 46.57 3.69
121 122 1.715862 CTTCATCGCTCGTCCGAGGA 61.716 60.000 17.50 12.96 44.84 3.71
122 123 1.298713 CTTCATCGCTCGTCCGAGG 60.299 63.158 17.50 8.46 42.19 4.63
123 124 1.941734 GCTTCATCGCTCGTCCGAG 60.942 63.158 12.19 12.19 44.56 4.63
124 125 2.102357 GCTTCATCGCTCGTCCGA 59.898 61.111 3.01 3.01 41.98 4.55
125 126 3.315521 CGCTTCATCGCTCGTCCG 61.316 66.667 0.00 0.00 0.00 4.79
126 127 2.202623 ACGCTTCATCGCTCGTCC 60.203 61.111 0.00 0.00 0.00 4.79
127 128 3.290619 GACGCTTCATCGCTCGTC 58.709 61.111 0.00 0.00 43.23 4.20
128 129 1.374343 TAGGACGCTTCATCGCTCGT 61.374 55.000 0.00 0.00 37.92 4.18
129 130 0.930742 GTAGGACGCTTCATCGCTCG 60.931 60.000 0.00 0.00 0.00 5.03
130 131 0.595310 GGTAGGACGCTTCATCGCTC 60.595 60.000 0.00 0.00 0.00 5.03
131 132 1.437986 GGTAGGACGCTTCATCGCT 59.562 57.895 0.00 0.00 0.00 4.93
132 133 1.944676 CGGTAGGACGCTTCATCGC 60.945 63.158 0.00 0.00 0.00 4.58
133 134 4.303853 CGGTAGGACGCTTCATCG 57.696 61.111 0.00 0.00 0.00 3.84
141 142 0.949105 GCCCATATTGCGGTAGGACG 60.949 60.000 0.00 0.00 0.00 4.79
142 143 0.396811 AGCCCATATTGCGGTAGGAC 59.603 55.000 0.00 0.00 0.00 3.85
143 144 0.396435 CAGCCCATATTGCGGTAGGA 59.604 55.000 0.00 0.00 0.00 2.94
144 145 0.606401 CCAGCCCATATTGCGGTAGG 60.606 60.000 0.00 0.00 0.00 3.18
145 146 1.237285 GCCAGCCCATATTGCGGTAG 61.237 60.000 0.00 0.00 0.00 3.18
146 147 1.228124 GCCAGCCCATATTGCGGTA 60.228 57.895 0.00 0.00 0.00 4.02
147 148 2.519302 GCCAGCCCATATTGCGGT 60.519 61.111 0.00 0.00 0.00 5.68
148 149 2.126596 TTGCCAGCCCATATTGCGG 61.127 57.895 0.00 0.00 0.00 5.69
149 150 1.066257 GTTGCCAGCCCATATTGCG 59.934 57.895 0.00 0.00 0.00 4.85
150 151 1.691196 TAGTTGCCAGCCCATATTGC 58.309 50.000 0.00 0.00 0.00 3.56
151 152 4.734398 TTTTAGTTGCCAGCCCATATTG 57.266 40.909 0.00 0.00 0.00 1.90
152 153 7.344352 TCTTTATTTTAGTTGCCAGCCCATATT 59.656 33.333 0.00 0.00 0.00 1.28
153 154 6.838612 TCTTTATTTTAGTTGCCAGCCCATAT 59.161 34.615 0.00 0.00 0.00 1.78
154 155 6.191315 TCTTTATTTTAGTTGCCAGCCCATA 58.809 36.000 0.00 0.00 0.00 2.74
155 156 5.022787 TCTTTATTTTAGTTGCCAGCCCAT 58.977 37.500 0.00 0.00 0.00 4.00
156 157 4.411927 TCTTTATTTTAGTTGCCAGCCCA 58.588 39.130 0.00 0.00 0.00 5.36
157 158 5.598416 ATCTTTATTTTAGTTGCCAGCCC 57.402 39.130 0.00 0.00 0.00 5.19
158 159 7.147976 CCATATCTTTATTTTAGTTGCCAGCC 58.852 38.462 0.00 0.00 0.00 4.85
159 160 7.147976 CCCATATCTTTATTTTAGTTGCCAGC 58.852 38.462 0.00 0.00 0.00 4.85
160 161 7.147976 GCCCATATCTTTATTTTAGTTGCCAG 58.852 38.462 0.00 0.00 0.00 4.85
161 162 6.041523 GGCCCATATCTTTATTTTAGTTGCCA 59.958 38.462 0.00 0.00 0.00 4.92
162 163 6.455647 GGCCCATATCTTTATTTTAGTTGCC 58.544 40.000 0.00 0.00 0.00 4.52
163 164 6.149633 CGGCCCATATCTTTATTTTAGTTGC 58.850 40.000 0.00 0.00 0.00 4.17
164 165 6.677913 CCGGCCCATATCTTTATTTTAGTTG 58.322 40.000 0.00 0.00 0.00 3.16
165 166 5.243060 GCCGGCCCATATCTTTATTTTAGTT 59.757 40.000 18.11 0.00 0.00 2.24
166 167 4.765339 GCCGGCCCATATCTTTATTTTAGT 59.235 41.667 18.11 0.00 0.00 2.24
167 168 4.157840 GGCCGGCCCATATCTTTATTTTAG 59.842 45.833 36.64 0.00 0.00 1.85
168 169 4.083565 GGCCGGCCCATATCTTTATTTTA 58.916 43.478 36.64 0.00 0.00 1.52
169 170 2.897326 GGCCGGCCCATATCTTTATTTT 59.103 45.455 36.64 0.00 0.00 1.82
170 171 2.525368 GGCCGGCCCATATCTTTATTT 58.475 47.619 36.64 0.00 0.00 1.40
171 172 1.613255 CGGCCGGCCCATATCTTTATT 60.613 52.381 39.24 0.00 0.00 1.40
172 173 0.035439 CGGCCGGCCCATATCTTTAT 60.035 55.000 39.24 0.00 0.00 1.40
173 174 1.373435 CGGCCGGCCCATATCTTTA 59.627 57.895 39.24 0.00 0.00 1.85
174 175 2.113139 CGGCCGGCCCATATCTTT 59.887 61.111 39.24 0.00 0.00 2.52
175 176 3.953775 CCGGCCGGCCCATATCTT 61.954 66.667 39.24 0.00 0.00 2.40
190 191 3.053896 GGGAAGGAAACCGTGCCG 61.054 66.667 0.00 0.00 33.81 5.69
191 192 0.037160 TAAGGGAAGGAAACCGTGCC 59.963 55.000 6.20 6.20 43.01 5.01
192 193 1.538512 GTTAAGGGAAGGAAACCGTGC 59.461 52.381 0.00 0.00 0.00 5.34
193 194 1.802365 CGTTAAGGGAAGGAAACCGTG 59.198 52.381 0.00 0.00 0.00 4.94
194 195 1.417517 ACGTTAAGGGAAGGAAACCGT 59.582 47.619 0.00 0.00 0.00 4.83
195 196 2.174363 ACGTTAAGGGAAGGAAACCG 57.826 50.000 0.00 0.00 0.00 4.44
196 197 2.995939 CGTACGTTAAGGGAAGGAAACC 59.004 50.000 7.22 0.00 0.00 3.27
197 198 3.653344 ACGTACGTTAAGGGAAGGAAAC 58.347 45.455 16.72 0.00 0.00 2.78
198 199 3.611530 CGACGTACGTTAAGGGAAGGAAA 60.612 47.826 23.70 0.00 37.22 3.13
199 200 2.095263 CGACGTACGTTAAGGGAAGGAA 60.095 50.000 23.70 0.00 37.22 3.36
200 201 1.468520 CGACGTACGTTAAGGGAAGGA 59.531 52.381 23.70 0.00 37.22 3.36
201 202 1.900237 CGACGTACGTTAAGGGAAGG 58.100 55.000 23.70 0.26 37.22 3.46
230 231 3.529533 CCACATGCACAGGAAACAAAAA 58.470 40.909 0.00 0.00 0.00 1.94
231 232 2.158986 CCCACATGCACAGGAAACAAAA 60.159 45.455 0.00 0.00 0.00 2.44
232 233 1.411977 CCCACATGCACAGGAAACAAA 59.588 47.619 0.00 0.00 0.00 2.83
233 234 1.039068 CCCACATGCACAGGAAACAA 58.961 50.000 0.00 0.00 0.00 2.83
234 235 1.462731 GCCCACATGCACAGGAAACA 61.463 55.000 0.00 0.00 0.00 2.83
235 236 1.290009 GCCCACATGCACAGGAAAC 59.710 57.895 0.00 0.00 0.00 2.78
236 237 1.907807 GGCCCACATGCACAGGAAA 60.908 57.895 0.00 0.00 0.00 3.13
237 238 2.283101 GGCCCACATGCACAGGAA 60.283 61.111 0.00 0.00 0.00 3.36
238 239 4.720902 CGGCCCACATGCACAGGA 62.721 66.667 0.00 0.00 0.00 3.86
254 255 1.968050 AAAGGATACCGGGACAGCCG 61.968 60.000 6.32 0.00 32.51 5.52
255 256 0.463833 CAAAGGATACCGGGACAGCC 60.464 60.000 6.32 2.20 37.17 4.85
256 257 0.252197 ACAAAGGATACCGGGACAGC 59.748 55.000 6.32 0.00 37.17 4.40
257 258 2.480759 CGTACAAAGGATACCGGGACAG 60.481 54.545 6.32 0.00 37.17 3.51
258 259 1.477700 CGTACAAAGGATACCGGGACA 59.522 52.381 6.32 0.00 37.17 4.02
259 260 1.478105 ACGTACAAAGGATACCGGGAC 59.522 52.381 6.32 0.00 37.17 4.46
260 261 1.851304 ACGTACAAAGGATACCGGGA 58.149 50.000 6.32 0.00 37.17 5.14
261 262 2.541588 CGTACGTACAAAGGATACCGGG 60.542 54.545 24.50 0.00 37.17 5.73
262 263 2.097466 ACGTACGTACAAAGGATACCGG 59.903 50.000 21.41 0.00 37.17 5.28
263 264 3.405170 ACGTACGTACAAAGGATACCG 57.595 47.619 21.41 9.59 37.17 4.02
264 265 4.986622 AGAACGTACGTACAAAGGATACC 58.013 43.478 23.12 3.96 37.17 2.73
265 266 5.736358 CAGAGAACGTACGTACAAAGGATAC 59.264 44.000 23.12 8.34 0.00 2.24
266 267 5.674569 GCAGAGAACGTACGTACAAAGGATA 60.675 44.000 23.12 0.00 0.00 2.59
267 268 4.730657 CAGAGAACGTACGTACAAAGGAT 58.269 43.478 23.12 2.47 0.00 3.24
268 269 3.610114 GCAGAGAACGTACGTACAAAGGA 60.610 47.826 23.12 0.00 0.00 3.36
269 270 2.660236 GCAGAGAACGTACGTACAAAGG 59.340 50.000 23.12 11.00 0.00 3.11
270 271 3.562505 AGCAGAGAACGTACGTACAAAG 58.437 45.455 23.12 12.92 0.00 2.77
271 272 3.251729 AGAGCAGAGAACGTACGTACAAA 59.748 43.478 23.12 0.00 0.00 2.83
272 273 2.810274 AGAGCAGAGAACGTACGTACAA 59.190 45.455 23.12 0.00 0.00 2.41
273 274 2.159037 CAGAGCAGAGAACGTACGTACA 59.841 50.000 23.12 0.00 0.00 2.90
274 275 2.771689 CAGAGCAGAGAACGTACGTAC 58.228 52.381 23.12 15.90 0.00 3.67
275 276 1.129998 GCAGAGCAGAGAACGTACGTA 59.870 52.381 23.12 0.00 0.00 3.57
276 277 0.109689 GCAGAGCAGAGAACGTACGT 60.110 55.000 16.72 16.72 0.00 3.57
277 278 0.169230 AGCAGAGCAGAGAACGTACG 59.831 55.000 15.01 15.01 0.00 3.67
278 279 1.470890 AGAGCAGAGCAGAGAACGTAC 59.529 52.381 0.00 0.00 0.00 3.67
279 280 1.827681 AGAGCAGAGCAGAGAACGTA 58.172 50.000 0.00 0.00 0.00 3.57
280 281 0.965439 AAGAGCAGAGCAGAGAACGT 59.035 50.000 0.00 0.00 0.00 3.99
281 282 1.725706 CAAAGAGCAGAGCAGAGAACG 59.274 52.381 0.00 0.00 0.00 3.95
282 283 2.765122 ACAAAGAGCAGAGCAGAGAAC 58.235 47.619 0.00 0.00 0.00 3.01
283 284 3.482156 AACAAAGAGCAGAGCAGAGAA 57.518 42.857 0.00 0.00 0.00 2.87
284 285 3.070734 AGAAACAAAGAGCAGAGCAGAGA 59.929 43.478 0.00 0.00 0.00 3.10
285 286 3.401182 AGAAACAAAGAGCAGAGCAGAG 58.599 45.455 0.00 0.00 0.00 3.35
286 287 3.482156 AGAAACAAAGAGCAGAGCAGA 57.518 42.857 0.00 0.00 0.00 4.26
287 288 4.314121 ACTAGAAACAAAGAGCAGAGCAG 58.686 43.478 0.00 0.00 0.00 4.24
288 289 4.342862 ACTAGAAACAAAGAGCAGAGCA 57.657 40.909 0.00 0.00 0.00 4.26
289 290 5.334491 GGAAACTAGAAACAAAGAGCAGAGC 60.334 44.000 0.00 0.00 0.00 4.09
290 291 5.994668 AGGAAACTAGAAACAAAGAGCAGAG 59.005 40.000 0.00 0.00 40.61 3.35
291 292 5.930135 AGGAAACTAGAAACAAAGAGCAGA 58.070 37.500 0.00 0.00 40.61 4.26
292 293 6.433766 CAAGGAAACTAGAAACAAAGAGCAG 58.566 40.000 0.00 0.00 42.68 4.24
293 294 5.299279 CCAAGGAAACTAGAAACAAAGAGCA 59.701 40.000 0.00 0.00 42.68 4.26
294 295 5.763088 CCAAGGAAACTAGAAACAAAGAGC 58.237 41.667 0.00 0.00 42.68 4.09
295 296 5.299279 TGCCAAGGAAACTAGAAACAAAGAG 59.701 40.000 0.00 0.00 42.68 2.85
296 297 5.067283 GTGCCAAGGAAACTAGAAACAAAGA 59.933 40.000 0.00 0.00 42.68 2.52
297 298 5.281727 GTGCCAAGGAAACTAGAAACAAAG 58.718 41.667 0.00 0.00 42.68 2.77
298 299 4.201970 CGTGCCAAGGAAACTAGAAACAAA 60.202 41.667 0.00 0.00 42.68 2.83
299 300 3.314080 CGTGCCAAGGAAACTAGAAACAA 59.686 43.478 0.00 0.00 42.68 2.83
300 301 2.875933 CGTGCCAAGGAAACTAGAAACA 59.124 45.455 0.00 0.00 42.68 2.83
301 302 2.876550 ACGTGCCAAGGAAACTAGAAAC 59.123 45.455 0.00 0.00 42.68 2.78
302 303 3.202829 ACGTGCCAAGGAAACTAGAAA 57.797 42.857 0.00 0.00 42.68 2.52
303 304 2.922740 ACGTGCCAAGGAAACTAGAA 57.077 45.000 0.00 0.00 42.68 2.10
304 305 2.028748 GGTACGTGCCAAGGAAACTAGA 60.029 50.000 18.66 0.00 42.68 2.43
305 306 2.028385 AGGTACGTGCCAAGGAAACTAG 60.028 50.000 25.19 0.00 42.68 2.57
306 307 1.972795 AGGTACGTGCCAAGGAAACTA 59.027 47.619 25.19 0.00 42.68 2.24
308 309 1.154197 GAGGTACGTGCCAAGGAAAC 58.846 55.000 25.19 0.00 0.00 2.78
309 310 0.759959 TGAGGTACGTGCCAAGGAAA 59.240 50.000 25.19 0.33 0.00 3.13
310 311 0.981183 ATGAGGTACGTGCCAAGGAA 59.019 50.000 25.19 5.41 0.00 3.36
311 312 1.855295 TATGAGGTACGTGCCAAGGA 58.145 50.000 25.19 5.47 0.00 3.36
312 313 2.158957 ACATATGAGGTACGTGCCAAGG 60.159 50.000 25.19 10.87 0.00 3.61
313 314 3.179443 ACATATGAGGTACGTGCCAAG 57.821 47.619 25.19 9.54 0.00 3.61
314 315 3.266636 CAACATATGAGGTACGTGCCAA 58.733 45.455 25.19 12.84 0.00 4.52
315 316 2.419436 CCAACATATGAGGTACGTGCCA 60.419 50.000 25.19 5.20 0.00 4.92
316 317 2.210116 CCAACATATGAGGTACGTGCC 58.790 52.381 15.72 15.72 0.00 5.01
317 318 2.864343 GACCAACATATGAGGTACGTGC 59.136 50.000 19.63 0.00 35.36 5.34
318 319 4.118093 TGACCAACATATGAGGTACGTG 57.882 45.455 19.63 3.64 35.36 4.49
319 320 4.811969 TTGACCAACATATGAGGTACGT 57.188 40.909 19.63 0.00 35.36 3.57
320 321 5.410132 TGTTTTGACCAACATATGAGGTACG 59.590 40.000 19.63 1.48 35.36 3.67
321 322 6.653320 TCTGTTTTGACCAACATATGAGGTAC 59.347 38.462 19.63 15.46 36.08 3.34
322 323 6.653320 GTCTGTTTTGACCAACATATGAGGTA 59.347 38.462 19.63 7.29 36.08 3.08
323 324 5.473504 GTCTGTTTTGACCAACATATGAGGT 59.526 40.000 19.68 19.68 36.08 3.85
324 325 5.942872 GTCTGTTTTGACCAACATATGAGG 58.057 41.667 10.38 13.01 36.08 3.86
361 362 8.032451 CCCGTTTTGATGATTTTTACCTACATT 58.968 33.333 0.00 0.00 0.00 2.71
362 363 7.394923 TCCCGTTTTGATGATTTTTACCTACAT 59.605 33.333 0.00 0.00 0.00 2.29
363 364 6.715718 TCCCGTTTTGATGATTTTTACCTACA 59.284 34.615 0.00 0.00 0.00 2.74
364 365 7.025365 GTCCCGTTTTGATGATTTTTACCTAC 58.975 38.462 0.00 0.00 0.00 3.18
365 366 6.128227 CGTCCCGTTTTGATGATTTTTACCTA 60.128 38.462 0.00 0.00 0.00 3.08
366 367 5.335348 CGTCCCGTTTTGATGATTTTTACCT 60.335 40.000 0.00 0.00 0.00 3.08
367 368 4.854839 CGTCCCGTTTTGATGATTTTTACC 59.145 41.667 0.00 0.00 0.00 2.85
368 369 5.691815 TCGTCCCGTTTTGATGATTTTTAC 58.308 37.500 0.00 0.00 0.00 2.01
369 370 5.943706 TCGTCCCGTTTTGATGATTTTTA 57.056 34.783 0.00 0.00 0.00 1.52
370 371 4.839668 TCGTCCCGTTTTGATGATTTTT 57.160 36.364 0.00 0.00 0.00 1.94
371 372 4.839668 TTCGTCCCGTTTTGATGATTTT 57.160 36.364 0.00 0.00 0.00 1.82
372 373 4.036971 TGTTTCGTCCCGTTTTGATGATTT 59.963 37.500 0.00 0.00 0.00 2.17
373 374 3.566322 TGTTTCGTCCCGTTTTGATGATT 59.434 39.130 0.00 0.00 0.00 2.57
374 375 3.142951 TGTTTCGTCCCGTTTTGATGAT 58.857 40.909 0.00 0.00 0.00 2.45
375 376 2.562635 TGTTTCGTCCCGTTTTGATGA 58.437 42.857 0.00 0.00 0.00 2.92
376 377 3.341857 TTGTTTCGTCCCGTTTTGATG 57.658 42.857 0.00 0.00 0.00 3.07
377 378 3.794138 GCTTTGTTTCGTCCCGTTTTGAT 60.794 43.478 0.00 0.00 0.00 2.57
378 379 2.478200 GCTTTGTTTCGTCCCGTTTTGA 60.478 45.455 0.00 0.00 0.00 2.69
379 380 1.849829 GCTTTGTTTCGTCCCGTTTTG 59.150 47.619 0.00 0.00 0.00 2.44
380 381 1.532298 CGCTTTGTTTCGTCCCGTTTT 60.532 47.619 0.00 0.00 0.00 2.43
381 382 0.028374 CGCTTTGTTTCGTCCCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
382 383 1.644913 CGCTTTGTTTCGTCCCGTT 59.355 52.632 0.00 0.00 0.00 4.44
383 384 2.248835 CCGCTTTGTTTCGTCCCGT 61.249 57.895 0.00 0.00 0.00 5.28
384 385 1.500512 TTCCGCTTTGTTTCGTCCCG 61.501 55.000 0.00 0.00 0.00 5.14
385 386 0.040692 GTTCCGCTTTGTTTCGTCCC 60.041 55.000 0.00 0.00 0.00 4.46
386 387 0.040692 GGTTCCGCTTTGTTTCGTCC 60.041 55.000 0.00 0.00 0.00 4.79
387 388 0.658897 TGGTTCCGCTTTGTTTCGTC 59.341 50.000 0.00 0.00 0.00 4.20
388 389 1.096416 TTGGTTCCGCTTTGTTTCGT 58.904 45.000 0.00 0.00 0.00 3.85
389 390 1.849829 GTTTGGTTCCGCTTTGTTTCG 59.150 47.619 0.00 0.00 0.00 3.46
390 391 2.198406 GGTTTGGTTCCGCTTTGTTTC 58.802 47.619 0.00 0.00 0.00 2.78
391 392 1.550976 TGGTTTGGTTCCGCTTTGTTT 59.449 42.857 0.00 0.00 0.00 2.83
392 393 1.187087 TGGTTTGGTTCCGCTTTGTT 58.813 45.000 0.00 0.00 0.00 2.83
393 394 1.136110 CTTGGTTTGGTTCCGCTTTGT 59.864 47.619 0.00 0.00 0.00 2.83
394 395 1.407258 TCTTGGTTTGGTTCCGCTTTG 59.593 47.619 0.00 0.00 0.00 2.77
395 396 1.770294 TCTTGGTTTGGTTCCGCTTT 58.230 45.000 0.00 0.00 0.00 3.51
396 397 1.770294 TTCTTGGTTTGGTTCCGCTT 58.230 45.000 0.00 0.00 0.00 4.68
397 398 1.995376 ATTCTTGGTTTGGTTCCGCT 58.005 45.000 0.00 0.00 0.00 5.52
398 399 2.094906 GGTATTCTTGGTTTGGTTCCGC 60.095 50.000 0.00 0.00 0.00 5.54
399 400 3.418047 AGGTATTCTTGGTTTGGTTCCG 58.582 45.455 0.00 0.00 0.00 4.30
400 401 7.096884 GAATAGGTATTCTTGGTTTGGTTCC 57.903 40.000 2.94 0.00 39.13 3.62
482 483 8.372459 AGTATCCCTTTTGCGAACATATGTATA 58.628 33.333 9.21 0.00 0.00 1.47
483 484 7.224297 AGTATCCCTTTTGCGAACATATGTAT 58.776 34.615 9.21 0.00 0.00 2.29
524 528 4.454678 TCTTTCTGCTATTCCGATGCAAT 58.545 39.130 0.00 0.00 36.22 3.56
559 563 9.092876 GTTTGTGGTGTTTGATTCTTTATTTGA 57.907 29.630 0.00 0.00 0.00 2.69
564 568 6.478344 GCATGTTTGTGGTGTTTGATTCTTTA 59.522 34.615 0.00 0.00 0.00 1.85
611 616 8.375493 ACAAGATTAGGTAACCTCTATGTTCA 57.625 34.615 0.00 0.00 34.61 3.18
612 617 8.697292 AGACAAGATTAGGTAACCTCTATGTTC 58.303 37.037 0.00 0.00 34.61 3.18
628 633 9.428150 GACTGCGAGAGTCTGAAGACAAGATTA 62.428 44.444 12.76 0.00 46.85 1.75
629 634 8.710277 GACTGCGAGAGTCTGAAGACAAGATT 62.710 46.154 12.76 0.00 46.85 2.40
630 635 7.332951 GACTGCGAGAGTCTGAAGACAAGAT 62.333 48.000 12.76 0.00 46.85 2.40
631 636 6.096962 GACTGCGAGAGTCTGAAGACAAGA 62.097 50.000 12.76 0.00 46.85 3.02
632 637 3.912909 GACTGCGAGAGTCTGAAGACAAG 60.913 52.174 12.76 2.52 46.85 3.16
633 638 2.030717 GACTGCGAGAGTCTGAAGACAA 60.031 50.000 12.76 0.00 46.85 3.18
634 639 1.537638 GACTGCGAGAGTCTGAAGACA 59.462 52.381 12.76 0.00 46.85 3.41
635 640 2.256445 GACTGCGAGAGTCTGAAGAC 57.744 55.000 0.00 2.06 46.85 3.01
658 663 4.833478 ATGTGCTATCTGACCAAGTCTT 57.167 40.909 0.00 0.00 33.15 3.01
691 701 1.074889 TCCTAGGTGGGAAAACAAGGC 59.925 52.381 9.08 0.00 36.20 4.35
720 730 2.623878 TACCTCAACAACGCCTTTCA 57.376 45.000 0.00 0.00 0.00 2.69
756 770 3.679083 CGCTAAACAGGAAGGGTTAGAGG 60.679 52.174 2.36 0.00 0.00 3.69
768 782 5.258456 TCTAGTAATGTCCGCTAAACAGG 57.742 43.478 0.00 0.00 0.00 4.00
795 809 0.970937 TCCAGTGTAGAGGCCGGAAG 60.971 60.000 5.05 0.00 0.00 3.46
796 810 0.325296 ATCCAGTGTAGAGGCCGGAA 60.325 55.000 5.05 0.00 0.00 4.30
898 915 8.494347 CACCTCGACACTATATAGTACTACAAC 58.506 40.741 15.03 2.23 34.13 3.32
915 960 0.874175 CGTCAGCAAACACCTCGACA 60.874 55.000 0.00 0.00 0.00 4.35
940 985 0.249405 ATTTGCTGCGGTGTGTTTGG 60.249 50.000 0.00 0.00 0.00 3.28
975 1020 2.476126 TCTGTATTCGGCGGGAAAAA 57.524 45.000 7.21 0.00 38.36 1.94
999 1044 6.950842 CCATATGGAATGGTAGAGAAGCATA 58.049 40.000 17.49 0.00 45.52 3.14
1012 1060 3.144506 GGTGCAGAGACCATATGGAATG 58.855 50.000 28.77 19.08 38.94 2.67
1047 1098 1.896220 TGAAGCTGAAAGAATGCGGT 58.104 45.000 0.00 0.00 34.07 5.68
1048 1099 2.227388 AGTTGAAGCTGAAAGAATGCGG 59.773 45.455 0.00 0.00 34.07 5.69
1092 1146 3.321682 CCTCAAAACTGAAATCTTGGGCA 59.678 43.478 0.00 0.00 0.00 5.36
1110 1167 0.313987 CGTAGTATGCATCGCCCTCA 59.686 55.000 0.19 0.00 0.00 3.86
1167 1224 0.326927 TTTGGATGTTCGGACTCCCC 59.673 55.000 9.14 2.25 0.00 4.81
1278 1335 4.020573 ACAGGACCACTTACATTGATTCGA 60.021 41.667 0.00 0.00 0.00 3.71
1329 1392 2.158957 GCTTGTCGGAGGATAATGACCA 60.159 50.000 0.00 0.00 0.00 4.02
1332 1395 4.380531 GAATGCTTGTCGGAGGATAATGA 58.619 43.478 0.00 0.00 0.00 2.57
1683 1756 0.538057 ATGGACACAACACTGGGCAG 60.538 55.000 0.00 0.00 0.00 4.85
1781 1854 0.392998 AAATCTTCCGTGCAGGCGAT 60.393 50.000 0.00 0.00 40.77 4.58
2016 2122 4.345547 ACTTTTCAAAAGGCCCCGATAAAA 59.654 37.500 14.47 0.75 0.00 1.52
2132 2244 9.388506 CCTATCAACTTGACAAGATTCTTATGT 57.611 33.333 21.95 0.00 0.00 2.29
2185 2297 3.126858 CCACCAACATATGAACTCAACCG 59.873 47.826 10.38 0.00 0.00 4.44
2231 2343 4.229876 GCAAAAGCTCATACACAAGGAAC 58.770 43.478 0.00 0.00 0.00 3.62
2340 2460 4.735662 ATTAAGTTGCAGCGACGTAAAA 57.264 36.364 20.90 5.95 28.85 1.52
2346 2466 6.019881 ACAAAAAGAAATTAAGTTGCAGCGAC 60.020 34.615 4.35 4.35 0.00 5.19
2364 2487 9.388346 TGTTTAGCATTACGTATGAACAAAAAG 57.612 29.630 0.00 0.00 36.26 2.27
2384 2511 4.541779 TGCGTTTACCAAAGCATGTTTAG 58.458 39.130 0.00 0.00 41.76 1.85
2597 2734 3.364964 CGAAAGTGCCCTGTACAACATTC 60.365 47.826 0.00 0.40 0.00 2.67
2771 2914 1.143838 CAGGATCGCATTCCCGTCA 59.856 57.895 0.00 0.00 36.35 4.35
2772 2915 1.595382 CCAGGATCGCATTCCCGTC 60.595 63.158 0.00 0.00 36.35 4.79
2794 2937 5.449588 CCGTTTATCAGCCTTTCGTCTACTA 60.450 44.000 0.00 0.00 0.00 1.82
2795 2938 4.421948 CGTTTATCAGCCTTTCGTCTACT 58.578 43.478 0.00 0.00 0.00 2.57
2823 2966 2.012673 CTGCTGAAGCCCATTAGTGAC 58.987 52.381 0.00 0.00 41.18 3.67
2824 2967 1.908619 TCTGCTGAAGCCCATTAGTGA 59.091 47.619 0.00 0.00 41.18 3.41
2981 3130 6.658816 ACAAAGATAATGGCAATGAGTGTGTA 59.341 34.615 0.00 0.00 0.00 2.90
3020 3170 8.950007 TTATTTCTTTTGACTTCCCCAACTAT 57.050 30.769 0.00 0.00 0.00 2.12
3073 3224 3.553828 TCCGGAAGTGATTTATGACCC 57.446 47.619 0.00 0.00 0.00 4.46
3090 3241 2.264813 TCGGCTTAGACGATTTTTCCG 58.735 47.619 5.89 0.00 38.55 4.30
3122 3273 0.872388 GTGATTTGGTTCTCGGCGTT 59.128 50.000 6.85 0.00 0.00 4.84
3132 3283 1.156736 CCGAGCTTTCGTGATTTGGT 58.843 50.000 0.00 0.00 0.00 3.67
3166 3317 1.128692 GTTGCCGAGACATGTACTTGC 59.871 52.381 0.00 0.24 0.00 4.01
3167 3318 2.412870 TGTTGCCGAGACATGTACTTG 58.587 47.619 0.00 7.18 0.00 3.16
3168 3319 2.831685 TGTTGCCGAGACATGTACTT 57.168 45.000 0.00 0.00 0.00 2.24
3193 3345 1.144057 GGCCTATCTCCACCGTGTG 59.856 63.158 0.00 0.00 0.00 3.82
3195 3347 0.541863 AAAGGCCTATCTCCACCGTG 59.458 55.000 5.16 0.00 0.00 4.94
3201 3353 1.765314 TCTCAGCAAAGGCCTATCTCC 59.235 52.381 5.16 0.00 42.56 3.71
3217 3369 4.058124 CGAGTTCACCTTTGTCAATCTCA 58.942 43.478 0.00 0.00 0.00 3.27
3293 3445 2.551912 GCCACGTGTCCCCTTGTTG 61.552 63.158 15.65 0.00 0.00 3.33
3313 3465 3.931130 CGTCAACGCCAACGCACA 61.931 61.111 0.00 0.00 45.53 4.57
3331 3484 3.181367 CGCCAACAGTCATGGAGC 58.819 61.111 0.00 0.00 40.56 4.70
3364 3517 0.888736 TGCCGAGTCACAACAATGGG 60.889 55.000 0.00 0.00 0.00 4.00
3438 3592 7.228507 GCAATGGTGGTCATACTTATGTAATGA 59.771 37.037 0.00 0.00 34.44 2.57
3481 3644 0.802494 GGGTTGTATGAAGTGGCGTG 59.198 55.000 0.00 0.00 0.00 5.34
3512 3675 2.143925 GAGGAAATAATTCGGGCGGAG 58.856 52.381 0.00 0.00 36.36 4.63
3515 3678 1.202770 AGGGAGGAAATAATTCGGGCG 60.203 52.381 0.00 0.00 36.36 6.13
3516 3679 2.230660 CAGGGAGGAAATAATTCGGGC 58.769 52.381 0.00 0.00 36.36 6.13
3529 3692 2.982130 CGGAAGGTGACAGGGAGG 59.018 66.667 0.00 0.00 0.00 4.30
3530 3693 2.266055 GCGGAAGGTGACAGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
3546 3709 1.654137 CGTGACAAACTGCGTTGGC 60.654 57.895 0.46 0.00 37.01 4.52
3549 3712 1.351707 CAGCGTGACAAACTGCGTT 59.648 52.632 0.00 0.00 34.73 4.84
3550 3713 0.528901 TACAGCGTGACAAACTGCGT 60.529 50.000 6.00 1.41 34.72 5.24
3554 3717 1.217882 GCAGTACAGCGTGACAAACT 58.782 50.000 0.00 0.00 0.00 2.66
3558 3721 1.300620 GTGGCAGTACAGCGTGACA 60.301 57.895 4.00 0.00 34.64 3.58
3559 3722 2.027625 GGTGGCAGTACAGCGTGAC 61.028 63.158 4.00 1.20 34.64 3.67
3564 3727 4.697756 TGGCGGTGGCAGTACAGC 62.698 66.667 0.82 0.82 42.47 4.40
3565 3728 2.742372 GTGGCGGTGGCAGTACAG 60.742 66.667 0.00 0.00 42.47 2.74
3580 3743 4.680237 TGTGGAGAAGCGGCGGTG 62.680 66.667 14.17 0.00 0.00 4.94
3581 3744 4.681978 GTGTGGAGAAGCGGCGGT 62.682 66.667 5.44 5.44 0.00 5.68
3593 3756 2.390599 CGGCAACAGATCGGTGTGG 61.391 63.158 0.00 0.00 0.00 4.17
3598 3761 1.424493 GAGAAGCGGCAACAGATCGG 61.424 60.000 1.45 0.00 0.00 4.18
3602 3765 1.301716 GTGGAGAAGCGGCAACAGA 60.302 57.895 1.45 0.00 0.00 3.41
3628 3791 3.615592 GCCACACAATTGCATCACAAGAT 60.616 43.478 5.05 0.00 42.87 2.40
3629 3792 2.288334 GCCACACAATTGCATCACAAGA 60.288 45.455 5.05 0.00 42.87 3.02
3637 3800 0.823769 TAACGGGCCACACAATTGCA 60.824 50.000 4.39 0.00 0.00 4.08
3642 3805 1.071814 GGAGTAACGGGCCACACAA 59.928 57.895 4.39 0.00 0.00 3.33
3645 3808 2.509651 AACGGAGTAACGGGCCACA 61.510 57.895 4.39 0.00 45.00 4.17
3647 3810 2.344500 CAACGGAGTAACGGGCCA 59.656 61.111 4.39 0.00 45.00 5.36
3706 3869 3.736224 CCAGGGGCTGGCATGTCT 61.736 66.667 2.88 0.00 45.13 3.41
3737 3900 9.880157 AATGATATATTTCCAAATATTGCAGGC 57.120 29.630 9.34 0.00 40.85 4.85
3751 3914 8.704668 ACCAAAACCCAGGAAATGATATATTTC 58.295 33.333 4.27 4.27 37.31 2.17
3752 3915 8.622572 ACCAAAACCCAGGAAATGATATATTT 57.377 30.769 0.00 0.00 0.00 1.40
3754 3917 9.722317 TTTACCAAAACCCAGGAAATGATATAT 57.278 29.630 0.00 0.00 0.00 0.86
3755 3918 9.548631 TTTTACCAAAACCCAGGAAATGATATA 57.451 29.630 0.00 0.00 0.00 0.86
3756 3919 8.442660 TTTTACCAAAACCCAGGAAATGATAT 57.557 30.769 0.00 0.00 0.00 1.63
3758 3921 6.755542 TTTTACCAAAACCCAGGAAATGAT 57.244 33.333 0.00 0.00 0.00 2.45
3759 3922 6.561519 TTTTTACCAAAACCCAGGAAATGA 57.438 33.333 0.00 0.00 0.00 2.57
3760 3923 7.815840 AATTTTTACCAAAACCCAGGAAATG 57.184 32.000 0.00 0.00 34.63 2.32
3761 3924 8.055790 TCAAATTTTTACCAAAACCCAGGAAAT 58.944 29.630 0.00 0.00 34.63 2.17
3762 3925 7.402862 TCAAATTTTTACCAAAACCCAGGAAA 58.597 30.769 0.00 0.00 34.63 3.13
3763 3926 6.958767 TCAAATTTTTACCAAAACCCAGGAA 58.041 32.000 0.00 0.00 34.63 3.36
3764 3927 6.408662 CCTCAAATTTTTACCAAAACCCAGGA 60.409 38.462 0.00 0.00 34.63 3.86
3765 3928 5.762711 CCTCAAATTTTTACCAAAACCCAGG 59.237 40.000 0.00 0.00 34.63 4.45
3766 3929 5.762711 CCCTCAAATTTTTACCAAAACCCAG 59.237 40.000 0.00 0.00 34.63 4.45
3768 3931 5.529430 CACCCTCAAATTTTTACCAAAACCC 59.471 40.000 0.00 0.00 34.63 4.11
3769 3932 6.116806 ACACCCTCAAATTTTTACCAAAACC 58.883 36.000 0.00 0.00 34.63 3.27
3810 4224 3.451178 GTGTAGTTTCTATGAGGCCTCCA 59.549 47.826 29.95 17.91 0.00 3.86
3834 4248 5.043737 ACTCTAGATCCTACCTCACAGAC 57.956 47.826 0.00 0.00 0.00 3.51
3838 4252 4.440826 TGGACTCTAGATCCTACCTCAC 57.559 50.000 17.05 0.00 37.13 3.51
3854 4268 6.859112 ACTGTACATGTTCTCTATTGGACT 57.141 37.500 2.30 0.00 0.00 3.85
3855 4269 7.907214 AAACTGTACATGTTCTCTATTGGAC 57.093 36.000 2.30 0.00 0.00 4.02
3882 4296 1.340017 CGGGCTCCTCAATTCCTTGAA 60.340 52.381 0.00 0.00 40.78 2.69
3883 4297 0.253044 CGGGCTCCTCAATTCCTTGA 59.747 55.000 0.00 0.00 39.07 3.02
3884 4298 0.035056 ACGGGCTCCTCAATTCCTTG 60.035 55.000 0.00 0.00 0.00 3.61
3885 4299 0.698818 AACGGGCTCCTCAATTCCTT 59.301 50.000 0.00 0.00 0.00 3.36
3886 4300 1.209747 GTAACGGGCTCCTCAATTCCT 59.790 52.381 0.00 0.00 0.00 3.36
3887 4301 1.209747 AGTAACGGGCTCCTCAATTCC 59.790 52.381 0.00 0.00 0.00 3.01
3888 4302 2.552031 GAGTAACGGGCTCCTCAATTC 58.448 52.381 0.00 0.00 0.00 2.17
3889 4303 1.209747 GGAGTAACGGGCTCCTCAATT 59.790 52.381 12.87 0.00 46.71 2.32
3890 4304 0.831307 GGAGTAACGGGCTCCTCAAT 59.169 55.000 12.87 0.00 46.71 2.57
3891 4305 2.283824 GGAGTAACGGGCTCCTCAA 58.716 57.895 12.87 0.00 46.71 3.02
3910 4324 3.860641 CACAAAAAGTTTCAAGGCCAGT 58.139 40.909 5.01 0.00 0.00 4.00
3982 4396 0.898320 ATGTGTTCTGCTAGGTCGCT 59.102 50.000 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.