Multiple sequence alignment - TraesCS3B01G519100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G519100 chr3B 100.000 3545 0 0 1 3545 762306538 762310082 0.000000e+00 6547.0
1 TraesCS3B01G519100 chr3B 86.842 228 20 5 2897 3120 762373275 762373496 2.730000e-61 246.0
2 TraesCS3B01G519100 chr3B 88.652 141 15 1 2981 3120 762592303 762592443 1.690000e-38 171.0
3 TraesCS3B01G519100 chr3B 95.161 62 3 0 3437 3498 276494081 276494020 8.100000e-17 99.0
4 TraesCS3B01G519100 chr3A 95.294 2741 106 9 70 2789 707123941 707126679 0.000000e+00 4325.0
5 TraesCS3B01G519100 chr3A 85.246 305 33 10 2811 3110 707126802 707127099 1.600000e-78 303.0
6 TraesCS3B01G519100 chr3A 93.401 197 12 1 3127 3323 707127326 707127521 1.240000e-74 291.0
7 TraesCS3B01G519100 chr3A 98.438 64 1 0 3 66 707123896 707123959 2.890000e-21 113.0
8 TraesCS3B01G519100 chr3A 100.000 43 0 0 2785 2827 707126708 707126750 2.930000e-11 80.5
9 TraesCS3B01G519100 chr3D 95.074 2639 98 13 70 2693 573119155 573121776 0.000000e+00 4124.0
10 TraesCS3B01G519100 chr3D 88.210 229 16 6 2897 3120 573122949 573123171 2.710000e-66 263.0
11 TraesCS3B01G519100 chr3D 90.811 185 10 3 2692 2875 573122124 573122302 1.270000e-59 241.0
12 TraesCS3B01G519100 chr3D 84.507 213 30 3 2897 3109 573149354 573149563 1.290000e-49 207.0
13 TraesCS3B01G519100 chr1D 91.929 2131 132 19 583 2696 423059090 423056983 0.000000e+00 2946.0
14 TraesCS3B01G519100 chr1B 91.317 2142 139 28 575 2696 572310932 572308818 0.000000e+00 2881.0
15 TraesCS3B01G519100 chr1A 91.874 2006 120 20 575 2559 518988677 518986694 0.000000e+00 2761.0
16 TraesCS3B01G519100 chr7D 90.807 805 58 9 728 1517 139369679 139368876 0.000000e+00 1062.0
17 TraesCS3B01G519100 chr4A 88.352 807 76 10 728 1517 220627979 220627174 0.000000e+00 953.0
18 TraesCS3B01G519100 chr6A 93.210 162 10 1 1357 1517 395653971 395654132 1.640000e-58 237.0
19 TraesCS3B01G519100 chr2A 92.593 162 11 1 1357 1517 315573675 315573836 7.650000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G519100 chr3B 762306538 762310082 3544 False 6547.000000 6547 100.0000 1 3545 1 chr3B.!!$F1 3544
1 TraesCS3B01G519100 chr3A 707123896 707127521 3625 False 1022.500000 4325 94.4758 3 3323 5 chr3A.!!$F1 3320
2 TraesCS3B01G519100 chr3D 573119155 573123171 4016 False 1542.666667 4124 91.3650 70 3120 3 chr3D.!!$F2 3050
3 TraesCS3B01G519100 chr1D 423056983 423059090 2107 True 2946.000000 2946 91.9290 583 2696 1 chr1D.!!$R1 2113
4 TraesCS3B01G519100 chr1B 572308818 572310932 2114 True 2881.000000 2881 91.3170 575 2696 1 chr1B.!!$R1 2121
5 TraesCS3B01G519100 chr1A 518986694 518988677 1983 True 2761.000000 2761 91.8740 575 2559 1 chr1A.!!$R1 1984
6 TraesCS3B01G519100 chr7D 139368876 139369679 803 True 1062.000000 1062 90.8070 728 1517 1 chr7D.!!$R1 789
7 TraesCS3B01G519100 chr4A 220627174 220627979 805 True 953.000000 953 88.3520 728 1517 1 chr4A.!!$R1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.034186 TGCTAGGGTGCTCATTTGGG 60.034 55.0 0.00 0.0 0.00 4.12 F
57 58 0.190815 AGGGTGCTCATTTGGGGTTT 59.809 50.0 0.00 0.0 0.00 3.27 F
58 59 0.321346 GGGTGCTCATTTGGGGTTTG 59.679 55.0 0.00 0.0 0.00 2.93 F
59 60 0.321346 GGTGCTCATTTGGGGTTTGG 59.679 55.0 0.00 0.0 0.00 3.28 F
772 788 0.460987 CGTCTCCATTGAGCAGGTCC 60.461 60.0 0.00 0.0 38.58 4.46 F
1686 1721 0.898326 TCAAGGCGCAGTCAGTAGGA 60.898 55.0 10.83 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1703 0.459237 CTCCTACTGACTGCGCCTTG 60.459 60.000 4.18 0.0 0.00 3.61 R
2001 2036 1.001641 GAGGGCCATGAGTGCAAGT 60.002 57.895 6.18 0.0 0.00 3.16 R
2055 2090 1.450312 GCCAAGGGACACCGATGAG 60.450 63.158 0.00 0.0 43.47 2.90 R
2100 2135 1.745115 ATCCATGTGGTTCACGGCG 60.745 57.895 4.80 4.8 37.14 6.46 R
2208 2243 0.815734 CCTTTGCAGCCTCCAGAATG 59.184 55.000 0.00 0.0 0.00 2.67 R
2963 4078 0.034059 AGTGCCTCAGTGAACGGAAG 59.966 55.000 2.62 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.139654 GATGATGTGCTAGGGTGCTCA 59.860 52.381 0.00 0.00 40.07 4.26
48 49 1.206878 TGATGTGCTAGGGTGCTCAT 58.793 50.000 4.12 4.12 45.84 2.90
49 50 1.561076 TGATGTGCTAGGGTGCTCATT 59.439 47.619 5.70 0.00 44.05 2.57
50 51 2.025981 TGATGTGCTAGGGTGCTCATTT 60.026 45.455 5.70 0.00 44.05 2.32
51 52 1.825090 TGTGCTAGGGTGCTCATTTG 58.175 50.000 0.00 0.00 32.50 2.32
52 53 1.098050 GTGCTAGGGTGCTCATTTGG 58.902 55.000 0.00 0.00 0.00 3.28
53 54 0.034186 TGCTAGGGTGCTCATTTGGG 60.034 55.000 0.00 0.00 0.00 4.12
54 55 0.753111 GCTAGGGTGCTCATTTGGGG 60.753 60.000 0.00 0.00 0.00 4.96
55 56 0.625849 CTAGGGTGCTCATTTGGGGT 59.374 55.000 0.00 0.00 0.00 4.95
56 57 1.005924 CTAGGGTGCTCATTTGGGGTT 59.994 52.381 0.00 0.00 0.00 4.11
57 58 0.190815 AGGGTGCTCATTTGGGGTTT 59.809 50.000 0.00 0.00 0.00 3.27
58 59 0.321346 GGGTGCTCATTTGGGGTTTG 59.679 55.000 0.00 0.00 0.00 2.93
59 60 0.321346 GGTGCTCATTTGGGGTTTGG 59.679 55.000 0.00 0.00 0.00 3.28
60 61 0.321346 GTGCTCATTTGGGGTTTGGG 59.679 55.000 0.00 0.00 0.00 4.12
61 62 0.835543 TGCTCATTTGGGGTTTGGGG 60.836 55.000 0.00 0.00 0.00 4.96
62 63 1.552799 GCTCATTTGGGGTTTGGGGG 61.553 60.000 0.00 0.00 0.00 5.40
63 64 1.537643 TCATTTGGGGTTTGGGGGC 60.538 57.895 0.00 0.00 0.00 5.80
64 65 1.538629 CATTTGGGGTTTGGGGGCT 60.539 57.895 0.00 0.00 0.00 5.19
65 66 1.538629 ATTTGGGGTTTGGGGGCTG 60.539 57.895 0.00 0.00 0.00 4.85
66 67 3.783239 TTTGGGGTTTGGGGGCTGG 62.783 63.158 0.00 0.00 0.00 4.85
180 181 4.690748 CGCAGGTTTTCAGTTAAGATCTCA 59.309 41.667 0.00 0.00 0.00 3.27
243 244 6.154363 TCTGTGTGAAAGGTGGAAAATTTTCT 59.846 34.615 25.86 8.99 37.35 2.52
246 247 6.986231 GTGTGAAAGGTGGAAAATTTTCTGAT 59.014 34.615 25.86 10.59 37.35 2.90
389 395 1.279840 GCAGTTGAGTTGTGCGTCC 59.720 57.895 0.00 0.00 0.00 4.79
412 418 0.603707 CTTGGTGTCGTCATGCCTGT 60.604 55.000 0.00 0.00 0.00 4.00
462 469 8.204836 GGTACAAGGATATGTGTAAGATCAAGT 58.795 37.037 0.00 0.00 34.75 3.16
472 479 5.408299 TGTGTAAGATCAAGTTCAATCCGTG 59.592 40.000 0.00 0.00 0.00 4.94
487 494 7.356089 TCAATCCGTGTACAATATAGGTCTT 57.644 36.000 0.00 0.00 0.00 3.01
503 510 1.541588 GTCTTGATGGGCCTGTTCAAC 59.458 52.381 4.53 0.00 0.00 3.18
537 548 3.971150 CATGTTTCCTTAAACGGTGCAA 58.029 40.909 0.00 0.00 46.63 4.08
580 591 8.871686 TGGAATACTTTCTTTCTTTTTCTTGC 57.128 30.769 0.00 0.00 32.16 4.01
610 621 4.134563 AGGTTGTGACAGTGTAAACCATC 58.865 43.478 25.48 9.95 42.25 3.51
699 710 9.941325 TTTTCTCACATTGCATAATGGTAAATT 57.059 25.926 3.53 0.00 46.33 1.82
701 712 9.941325 TTCTCACATTGCATAATGGTAAATTTT 57.059 25.926 0.00 0.00 46.33 1.82
750 761 4.448210 TCTAACTGAGTGGTGTTGGTTTC 58.552 43.478 0.00 0.00 0.00 2.78
754 765 1.226746 GAGTGGTGTTGGTTTCTCCG 58.773 55.000 0.00 0.00 39.52 4.63
772 788 0.460987 CGTCTCCATTGAGCAGGTCC 60.461 60.000 0.00 0.00 38.58 4.46
802 825 7.147742 TGTGCACCATATAGTGATTTGTCTCTA 60.148 37.037 15.69 0.00 40.34 2.43
950 975 4.461198 TGGAAGGAAGAAAGACAGGTTTC 58.539 43.478 0.00 0.00 36.79 2.78
1416 1451 1.446907 CTGCCATTCACACAGTCCTC 58.553 55.000 0.00 0.00 0.00 3.71
1668 1703 3.153919 AGTAGCATCTCGGGAGAAGATC 58.846 50.000 2.00 0.00 41.36 2.75
1686 1721 0.898326 TCAAGGCGCAGTCAGTAGGA 60.898 55.000 10.83 0.00 0.00 2.94
1701 1736 1.045407 TAGGAGTTGTTGCACCTCGT 58.955 50.000 0.00 0.00 34.42 4.18
1983 2018 3.636153 AGGAAGCTCCTTAACACCATC 57.364 47.619 0.00 0.00 46.91 3.51
2001 2036 1.890041 CGGGTTTGTTGTCTCGGCA 60.890 57.895 0.00 0.00 0.00 5.69
2002 2037 1.652563 GGGTTTGTTGTCTCGGCAC 59.347 57.895 0.00 0.00 0.00 5.01
2193 2228 1.523938 GGCTGGGATAGTTGGCGTC 60.524 63.158 0.00 0.00 0.00 5.19
2208 2243 2.741211 GTCGGCCTCACGGGAAAC 60.741 66.667 0.00 0.00 37.23 2.78
2283 2318 4.095782 TGGAAAACAGTCTTCTTTGTTCCG 59.904 41.667 0.00 0.00 36.56 4.30
2354 2389 7.560368 ACTGGTGAGAAGATTTTCGAATAGAT 58.440 34.615 0.00 0.00 38.38 1.98
2570 2607 7.675161 TGATCCTATGACTCTGTTATTCCAA 57.325 36.000 0.00 0.00 0.00 3.53
2641 2678 6.000246 TGGGCATACATCATCTCTGTTTTA 58.000 37.500 0.00 0.00 0.00 1.52
2642 2679 5.822519 TGGGCATACATCATCTCTGTTTTAC 59.177 40.000 0.00 0.00 0.00 2.01
2735 3123 7.286316 AGGAAGCCTGAAATATTATGGTCAAAG 59.714 37.037 0.00 0.00 29.57 2.77
2767 3155 6.949352 AACCATATGCAAAGGTAAGATGAG 57.051 37.500 8.30 0.00 34.63 2.90
2772 3160 7.335422 CCATATGCAAAGGTAAGATGAGGATAC 59.665 40.741 0.00 0.00 0.00 2.24
2929 4044 7.502226 TCCTTTTCTGAATTTCTTTCTGTAGCA 59.498 33.333 0.00 0.00 35.44 3.49
2930 4045 7.592903 CCTTTTCTGAATTTCTTTCTGTAGCAC 59.407 37.037 0.00 0.00 35.44 4.40
2960 4075 5.065346 TCAGACACGACTTGCTCTCTTATAG 59.935 44.000 0.00 0.00 0.00 1.31
2962 4077 6.037281 CAGACACGACTTGCTCTCTTATAGTA 59.963 42.308 0.00 0.00 0.00 1.82
2963 4078 6.037391 AGACACGACTTGCTCTCTTATAGTAC 59.963 42.308 0.00 0.00 0.00 2.73
2965 4080 6.374894 ACACGACTTGCTCTCTTATAGTACTT 59.625 38.462 0.00 0.00 0.00 2.24
2966 4081 6.908284 CACGACTTGCTCTCTTATAGTACTTC 59.092 42.308 0.00 0.00 0.00 3.01
2967 4082 6.038492 ACGACTTGCTCTCTTATAGTACTTCC 59.962 42.308 0.00 0.00 0.00 3.46
2969 4084 5.887035 ACTTGCTCTCTTATAGTACTTCCGT 59.113 40.000 0.00 0.00 0.00 4.69
2971 4086 6.374565 TGCTCTCTTATAGTACTTCCGTTC 57.625 41.667 0.00 0.00 0.00 3.95
2972 4087 5.884232 TGCTCTCTTATAGTACTTCCGTTCA 59.116 40.000 0.00 0.00 0.00 3.18
2973 4088 6.183360 TGCTCTCTTATAGTACTTCCGTTCAC 60.183 42.308 0.00 0.00 0.00 3.18
2974 4089 6.038492 GCTCTCTTATAGTACTTCCGTTCACT 59.962 42.308 0.00 0.00 0.00 3.41
2975 4090 7.317842 TCTCTTATAGTACTTCCGTTCACTG 57.682 40.000 0.00 0.00 0.00 3.66
2976 4091 7.108194 TCTCTTATAGTACTTCCGTTCACTGA 58.892 38.462 0.00 0.00 0.00 3.41
3111 4229 6.043706 CCTCCCATTCCTAATGAACTACAGAT 59.956 42.308 1.23 0.00 41.46 2.90
3114 4232 5.471456 CCATTCCTAATGAACTACAGATGCC 59.529 44.000 1.23 0.00 41.46 4.40
3115 4233 5.957771 TTCCTAATGAACTACAGATGCCT 57.042 39.130 0.00 0.00 0.00 4.75
3116 4234 5.537300 TCCTAATGAACTACAGATGCCTC 57.463 43.478 0.00 0.00 0.00 4.70
3117 4235 4.345257 TCCTAATGAACTACAGATGCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
3119 4237 1.951209 TGAACTACAGATGCCTCCCA 58.049 50.000 0.00 0.00 0.00 4.37
3120 4238 2.481441 TGAACTACAGATGCCTCCCAT 58.519 47.619 0.00 0.00 36.70 4.00
3121 4239 2.846206 TGAACTACAGATGCCTCCCATT 59.154 45.455 0.00 0.00 33.29 3.16
3122 4240 4.037222 TGAACTACAGATGCCTCCCATTA 58.963 43.478 0.00 0.00 33.29 1.90
3123 4241 4.141711 TGAACTACAGATGCCTCCCATTAC 60.142 45.833 0.00 0.00 33.29 1.89
3124 4242 3.658725 ACTACAGATGCCTCCCATTACT 58.341 45.455 0.00 0.00 33.29 2.24
3125 4243 4.816126 ACTACAGATGCCTCCCATTACTA 58.184 43.478 0.00 0.00 33.29 1.82
3150 4478 2.998316 AGTATTGAGCAGGAGAAGGC 57.002 50.000 0.00 0.00 0.00 4.35
3152 4480 2.776536 AGTATTGAGCAGGAGAAGGCAT 59.223 45.455 0.00 0.00 0.00 4.40
3175 4503 3.751175 TGCATCCTTATATAAAGGCACGC 59.249 43.478 3.08 7.03 37.34 5.34
3177 4505 3.034721 TCCTTATATAAAGGCACGCGG 57.965 47.619 12.47 0.00 37.34 6.46
3196 4524 0.530870 GCATAGGCCGAGAGTGTTCC 60.531 60.000 0.00 0.00 0.00 3.62
3213 4541 5.899547 AGTGTTCCCCTCTTTTCTGAAAAAT 59.100 36.000 15.67 0.00 34.00 1.82
3276 4604 1.013596 TGTGTGCTTCAACTCAACGG 58.986 50.000 0.00 0.00 0.00 4.44
3285 4613 4.988598 ACTCAACGGTGGCTGCGG 62.989 66.667 0.00 0.00 0.00 5.69
3323 4651 8.675504 ACAAAAGCAGATGAGAGATATTTCTTG 58.324 33.333 0.00 0.00 30.30 3.02
3324 4652 8.890718 CAAAAGCAGATGAGAGATATTTCTTGA 58.109 33.333 0.00 0.00 30.30 3.02
3325 4653 9.458727 AAAAGCAGATGAGAGATATTTCTTGAA 57.541 29.630 0.00 0.00 30.30 2.69
3326 4654 8.436046 AAGCAGATGAGAGATATTTCTTGAAC 57.564 34.615 0.00 0.00 30.30 3.18
3327 4655 6.700960 AGCAGATGAGAGATATTTCTTGAACG 59.299 38.462 0.00 0.00 30.30 3.95
3328 4656 6.699204 GCAGATGAGAGATATTTCTTGAACGA 59.301 38.462 0.00 0.00 30.30 3.85
3329 4657 7.384660 GCAGATGAGAGATATTTCTTGAACGAT 59.615 37.037 0.00 0.00 30.30 3.73
3330 4658 8.701540 CAGATGAGAGATATTTCTTGAACGATG 58.298 37.037 0.00 0.00 30.30 3.84
3331 4659 6.834959 TGAGAGATATTTCTTGAACGATGC 57.165 37.500 0.00 0.00 30.30 3.91
3332 4660 6.340522 TGAGAGATATTTCTTGAACGATGCA 58.659 36.000 0.00 0.00 30.30 3.96
3333 4661 6.478016 TGAGAGATATTTCTTGAACGATGCAG 59.522 38.462 0.00 0.00 30.30 4.41
3334 4662 6.577103 AGAGATATTTCTTGAACGATGCAGA 58.423 36.000 0.00 0.00 30.30 4.26
3335 4663 7.215789 AGAGATATTTCTTGAACGATGCAGAT 58.784 34.615 0.00 0.00 30.30 2.90
3336 4664 7.171167 AGAGATATTTCTTGAACGATGCAGATG 59.829 37.037 0.00 0.00 30.30 2.90
3337 4665 6.988580 AGATATTTCTTGAACGATGCAGATGA 59.011 34.615 0.00 0.00 0.00 2.92
3338 4666 4.934075 TTTCTTGAACGATGCAGATGAG 57.066 40.909 0.00 0.00 0.00 2.90
3339 4667 2.897436 TCTTGAACGATGCAGATGAGG 58.103 47.619 0.00 0.00 0.00 3.86
3340 4668 2.234661 TCTTGAACGATGCAGATGAGGT 59.765 45.455 0.00 0.00 0.00 3.85
3341 4669 2.014335 TGAACGATGCAGATGAGGTG 57.986 50.000 0.00 0.00 0.00 4.00
3342 4670 1.550072 TGAACGATGCAGATGAGGTGA 59.450 47.619 0.00 0.00 0.00 4.02
3343 4671 2.028203 TGAACGATGCAGATGAGGTGAA 60.028 45.455 0.00 0.00 0.00 3.18
3344 4672 2.768253 ACGATGCAGATGAGGTGAAA 57.232 45.000 0.00 0.00 0.00 2.69
3345 4673 2.625737 ACGATGCAGATGAGGTGAAAG 58.374 47.619 0.00 0.00 0.00 2.62
3346 4674 2.027745 ACGATGCAGATGAGGTGAAAGT 60.028 45.455 0.00 0.00 0.00 2.66
3347 4675 3.195610 ACGATGCAGATGAGGTGAAAGTA 59.804 43.478 0.00 0.00 0.00 2.24
3348 4676 4.183865 CGATGCAGATGAGGTGAAAGTAA 58.816 43.478 0.00 0.00 0.00 2.24
3349 4677 4.813161 CGATGCAGATGAGGTGAAAGTAAT 59.187 41.667 0.00 0.00 0.00 1.89
3350 4678 5.277202 CGATGCAGATGAGGTGAAAGTAATG 60.277 44.000 0.00 0.00 0.00 1.90
3351 4679 5.164620 TGCAGATGAGGTGAAAGTAATGA 57.835 39.130 0.00 0.00 0.00 2.57
3352 4680 5.181009 TGCAGATGAGGTGAAAGTAATGAG 58.819 41.667 0.00 0.00 0.00 2.90
3353 4681 5.181748 GCAGATGAGGTGAAAGTAATGAGT 58.818 41.667 0.00 0.00 0.00 3.41
3354 4682 6.070824 TGCAGATGAGGTGAAAGTAATGAGTA 60.071 38.462 0.00 0.00 0.00 2.59
3355 4683 6.818644 GCAGATGAGGTGAAAGTAATGAGTAA 59.181 38.462 0.00 0.00 0.00 2.24
3356 4684 7.334421 GCAGATGAGGTGAAAGTAATGAGTAAA 59.666 37.037 0.00 0.00 0.00 2.01
3357 4685 8.877779 CAGATGAGGTGAAAGTAATGAGTAAAG 58.122 37.037 0.00 0.00 0.00 1.85
3358 4686 8.598041 AGATGAGGTGAAAGTAATGAGTAAAGT 58.402 33.333 0.00 0.00 0.00 2.66
3359 4687 9.871238 GATGAGGTGAAAGTAATGAGTAAAGTA 57.129 33.333 0.00 0.00 0.00 2.24
3368 4696 9.908152 AAAGTAATGAGTAAAGTAATTGTTGGC 57.092 29.630 0.00 0.00 0.00 4.52
3369 4697 8.051901 AGTAATGAGTAAAGTAATTGTTGGCC 57.948 34.615 0.00 0.00 0.00 5.36
3370 4698 5.914898 ATGAGTAAAGTAATTGTTGGCCC 57.085 39.130 0.00 0.00 0.00 5.80
3371 4699 4.730966 TGAGTAAAGTAATTGTTGGCCCA 58.269 39.130 0.00 0.00 0.00 5.36
3372 4700 5.141182 TGAGTAAAGTAATTGTTGGCCCAA 58.859 37.500 0.00 0.00 0.00 4.12
3373 4701 5.010213 TGAGTAAAGTAATTGTTGGCCCAAC 59.990 40.000 19.89 19.89 43.78 3.77
3374 4702 5.144832 AGTAAAGTAATTGTTGGCCCAACT 58.855 37.500 26.03 9.93 43.85 3.16
3375 4703 5.600898 AGTAAAGTAATTGTTGGCCCAACTT 59.399 36.000 26.03 15.83 43.85 2.66
3376 4704 6.778559 AGTAAAGTAATTGTTGGCCCAACTTA 59.221 34.615 26.03 14.86 43.85 2.24
3377 4705 6.680148 AAAGTAATTGTTGGCCCAACTTAT 57.320 33.333 26.03 16.51 43.85 1.73
3378 4706 6.680148 AAGTAATTGTTGGCCCAACTTATT 57.320 33.333 26.03 23.78 43.85 1.40
3379 4707 7.784470 AAGTAATTGTTGGCCCAACTTATTA 57.216 32.000 26.03 22.92 43.85 0.98
3380 4708 7.165460 AGTAATTGTTGGCCCAACTTATTAC 57.835 36.000 31.54 31.54 43.85 1.89
3381 4709 6.722129 AGTAATTGTTGGCCCAACTTATTACA 59.278 34.615 34.96 19.86 43.85 2.41
3382 4710 6.426646 AATTGTTGGCCCAACTTATTACAA 57.573 33.333 26.03 12.28 43.85 2.41
3383 4711 5.461032 TTGTTGGCCCAACTTATTACAAG 57.539 39.130 26.03 0.00 43.85 3.16
3384 4712 4.475345 TGTTGGCCCAACTTATTACAAGT 58.525 39.130 26.03 0.00 43.85 3.16
3385 4713 5.632118 TGTTGGCCCAACTTATTACAAGTA 58.368 37.500 26.03 0.00 43.85 2.24
3386 4714 5.474189 TGTTGGCCCAACTTATTACAAGTAC 59.526 40.000 26.03 0.00 43.85 2.73
3387 4715 4.591929 TGGCCCAACTTATTACAAGTACC 58.408 43.478 0.00 0.00 0.00 3.34
3388 4716 4.043059 TGGCCCAACTTATTACAAGTACCA 59.957 41.667 0.00 0.00 0.00 3.25
3389 4717 5.198207 GGCCCAACTTATTACAAGTACCAT 58.802 41.667 0.00 0.00 0.00 3.55
3390 4718 6.069556 TGGCCCAACTTATTACAAGTACCATA 60.070 38.462 0.00 0.00 0.00 2.74
3391 4719 6.485648 GGCCCAACTTATTACAAGTACCATAG 59.514 42.308 0.00 0.00 0.00 2.23
3392 4720 6.485648 GCCCAACTTATTACAAGTACCATAGG 59.514 42.308 0.00 0.00 0.00 2.57
3393 4721 7.636413 GCCCAACTTATTACAAGTACCATAGGA 60.636 40.741 0.00 0.00 0.00 2.94
3394 4722 7.931948 CCCAACTTATTACAAGTACCATAGGAG 59.068 40.741 0.00 0.00 0.00 3.69
3395 4723 7.931948 CCAACTTATTACAAGTACCATAGGAGG 59.068 40.741 0.00 0.00 0.00 4.30
3396 4724 8.483758 CAACTTATTACAAGTACCATAGGAGGT 58.516 37.037 0.00 0.00 45.72 3.85
3397 4725 8.619683 ACTTATTACAAGTACCATAGGAGGTT 57.380 34.615 0.00 0.00 43.08 3.50
3398 4726 9.054580 ACTTATTACAAGTACCATAGGAGGTTT 57.945 33.333 0.00 0.00 43.08 3.27
3399 4727 9.901172 CTTATTACAAGTACCATAGGAGGTTTT 57.099 33.333 0.00 0.00 43.08 2.43
3400 4728 9.675464 TTATTACAAGTACCATAGGAGGTTTTG 57.325 33.333 0.00 0.00 43.08 2.44
3401 4729 4.918588 ACAAGTACCATAGGAGGTTTTGG 58.081 43.478 11.88 0.00 43.08 3.28
3402 4730 4.263771 ACAAGTACCATAGGAGGTTTTGGG 60.264 45.833 11.88 0.00 43.08 4.12
3403 4731 3.538387 AGTACCATAGGAGGTTTTGGGT 58.462 45.455 0.00 0.00 43.08 4.51
3404 4732 2.899303 ACCATAGGAGGTTTTGGGTG 57.101 50.000 0.00 0.00 39.34 4.61
3405 4733 2.354328 ACCATAGGAGGTTTTGGGTGA 58.646 47.619 0.00 0.00 39.34 4.02
3406 4734 2.719705 ACCATAGGAGGTTTTGGGTGAA 59.280 45.455 0.00 0.00 39.34 3.18
3407 4735 3.336694 ACCATAGGAGGTTTTGGGTGAAT 59.663 43.478 0.00 0.00 39.34 2.57
3408 4736 4.542525 ACCATAGGAGGTTTTGGGTGAATA 59.457 41.667 0.00 0.00 39.34 1.75
3409 4737 5.015817 ACCATAGGAGGTTTTGGGTGAATAA 59.984 40.000 0.00 0.00 39.34 1.40
3410 4738 5.955355 CCATAGGAGGTTTTGGGTGAATAAA 59.045 40.000 0.00 0.00 0.00 1.40
3411 4739 6.439058 CCATAGGAGGTTTTGGGTGAATAAAA 59.561 38.462 0.00 0.00 0.00 1.52
3412 4740 7.363793 CCATAGGAGGTTTTGGGTGAATAAAAG 60.364 40.741 0.00 0.00 0.00 2.27
3413 4741 4.283467 AGGAGGTTTTGGGTGAATAAAAGC 59.717 41.667 0.00 0.00 41.84 3.51
3415 4743 5.887214 AGGTTTTGGGTGAATAAAAGCTT 57.113 34.783 7.96 0.00 46.43 3.74
3416 4744 6.247229 AGGTTTTGGGTGAATAAAAGCTTT 57.753 33.333 5.69 5.69 46.43 3.51
3417 4745 6.288294 AGGTTTTGGGTGAATAAAAGCTTTC 58.712 36.000 13.10 0.00 46.43 2.62
3418 4746 6.052360 GGTTTTGGGTGAATAAAAGCTTTCA 58.948 36.000 13.10 3.00 39.72 2.69
3419 4747 6.710295 GGTTTTGGGTGAATAAAAGCTTTCAT 59.290 34.615 13.10 0.00 39.72 2.57
3420 4748 7.228507 GGTTTTGGGTGAATAAAAGCTTTCATT 59.771 33.333 13.10 10.06 39.72 2.57
3421 4749 9.267084 GTTTTGGGTGAATAAAAGCTTTCATTA 57.733 29.630 13.10 1.54 34.60 1.90
3422 4750 8.825667 TTTGGGTGAATAAAAGCTTTCATTAC 57.174 30.769 13.10 8.69 34.60 1.89
3423 4751 6.616947 TGGGTGAATAAAAGCTTTCATTACG 58.383 36.000 13.10 0.00 34.60 3.18
3424 4752 6.207810 TGGGTGAATAAAAGCTTTCATTACGT 59.792 34.615 13.10 0.00 34.60 3.57
3425 4753 7.088272 GGGTGAATAAAAGCTTTCATTACGTT 58.912 34.615 13.10 0.00 34.60 3.99
3426 4754 7.061789 GGGTGAATAAAAGCTTTCATTACGTTG 59.938 37.037 13.10 0.00 34.60 4.10
3427 4755 7.061789 GGTGAATAAAAGCTTTCATTACGTTGG 59.938 37.037 13.10 0.00 34.60 3.77
3428 4756 7.061789 GTGAATAAAAGCTTTCATTACGTTGGG 59.938 37.037 13.10 0.00 34.60 4.12
3429 4757 3.297830 AAAGCTTTCATTACGTTGGGC 57.702 42.857 5.69 0.00 0.00 5.36
3430 4758 1.173913 AGCTTTCATTACGTTGGGCC 58.826 50.000 0.00 0.00 0.00 5.80
3431 4759 0.885196 GCTTTCATTACGTTGGGCCA 59.115 50.000 0.00 0.00 0.00 5.36
3432 4760 1.271102 GCTTTCATTACGTTGGGCCAA 59.729 47.619 16.66 16.66 0.00 4.52
3433 4761 2.924880 GCTTTCATTACGTTGGGCCAAC 60.925 50.000 34.43 34.43 40.54 3.77
3434 4762 2.279935 TTCATTACGTTGGGCCAACT 57.720 45.000 38.24 28.61 41.62 3.16
3435 4763 2.279935 TCATTACGTTGGGCCAACTT 57.720 45.000 38.24 33.42 41.62 2.66
3436 4764 2.588620 TCATTACGTTGGGCCAACTTT 58.411 42.857 38.24 28.96 41.62 2.66
3437 4765 2.959707 TCATTACGTTGGGCCAACTTTT 59.040 40.909 38.24 26.83 41.62 2.27
3438 4766 3.385111 TCATTACGTTGGGCCAACTTTTT 59.615 39.130 38.24 24.73 41.62 1.94
3466 4794 4.073052 TGGAACACCGTGCATTCC 57.927 55.556 12.10 12.10 42.00 3.01
3467 4795 4.073052 GGAACACCGTGCATTCCA 57.927 55.556 13.53 0.00 41.40 3.53
3468 4796 0.251121 TGGAACACCGTGCATTCCAT 60.251 50.000 16.08 0.00 45.46 3.41
3469 4797 0.887933 GGAACACCGTGCATTCCATT 59.112 50.000 13.53 0.00 41.40 3.16
3470 4798 2.088423 GGAACACCGTGCATTCCATTA 58.912 47.619 13.53 0.00 41.40 1.90
3471 4799 2.490115 GGAACACCGTGCATTCCATTAA 59.510 45.455 13.53 0.00 41.40 1.40
3472 4800 3.498082 GAACACCGTGCATTCCATTAAC 58.502 45.455 0.00 0.00 0.00 2.01
3473 4801 2.790433 ACACCGTGCATTCCATTAACT 58.210 42.857 0.00 0.00 0.00 2.24
3474 4802 3.945346 ACACCGTGCATTCCATTAACTA 58.055 40.909 0.00 0.00 0.00 2.24
3475 4803 3.938963 ACACCGTGCATTCCATTAACTAG 59.061 43.478 0.00 0.00 0.00 2.57
3476 4804 3.938963 CACCGTGCATTCCATTAACTAGT 59.061 43.478 0.00 0.00 0.00 2.57
3477 4805 3.938963 ACCGTGCATTCCATTAACTAGTG 59.061 43.478 0.00 0.00 0.00 2.74
3478 4806 3.312421 CCGTGCATTCCATTAACTAGTGG 59.688 47.826 0.00 0.00 34.68 4.00
3479 4807 4.188462 CGTGCATTCCATTAACTAGTGGA 58.812 43.478 0.00 0.00 39.90 4.02
3480 4808 4.034048 CGTGCATTCCATTAACTAGTGGAC 59.966 45.833 0.00 0.00 41.12 4.02
3481 4809 4.034048 GTGCATTCCATTAACTAGTGGACG 59.966 45.833 0.00 0.00 41.12 4.79
3482 4810 3.002348 GCATTCCATTAACTAGTGGACGC 59.998 47.826 0.00 0.76 41.12 5.19
3483 4811 2.572191 TCCATTAACTAGTGGACGCG 57.428 50.000 3.53 3.53 37.20 6.01
3484 4812 2.093890 TCCATTAACTAGTGGACGCGA 58.906 47.619 15.93 0.00 37.20 5.87
3485 4813 2.159338 TCCATTAACTAGTGGACGCGAC 60.159 50.000 15.93 6.56 37.20 5.19
3486 4814 2.159282 CCATTAACTAGTGGACGCGACT 60.159 50.000 15.93 8.95 35.29 4.18
3487 4815 3.065786 CCATTAACTAGTGGACGCGACTA 59.934 47.826 15.93 9.76 35.29 2.59
3488 4816 4.439153 CCATTAACTAGTGGACGCGACTAA 60.439 45.833 15.93 0.00 35.29 2.24
3489 4817 4.764679 TTAACTAGTGGACGCGACTAAA 57.235 40.909 15.93 0.00 0.00 1.85
3490 4818 3.863142 AACTAGTGGACGCGACTAAAT 57.137 42.857 15.93 1.16 0.00 1.40
3491 4819 3.863142 ACTAGTGGACGCGACTAAATT 57.137 42.857 15.93 0.00 0.00 1.82
3492 4820 3.508762 ACTAGTGGACGCGACTAAATTG 58.491 45.455 15.93 2.71 0.00 2.32
3493 4821 2.450609 AGTGGACGCGACTAAATTGT 57.549 45.000 15.93 0.00 0.00 2.71
3494 4822 2.334838 AGTGGACGCGACTAAATTGTC 58.665 47.619 15.93 0.00 0.00 3.18
3503 4831 2.863739 GACTAAATTGTCGGCCAAAGC 58.136 47.619 2.24 0.00 36.44 3.51
3504 4832 2.488153 GACTAAATTGTCGGCCAAAGCT 59.512 45.455 2.24 0.00 39.73 3.74
3505 4833 3.681593 ACTAAATTGTCGGCCAAAGCTA 58.318 40.909 2.24 0.00 39.73 3.32
3506 4834 3.439129 ACTAAATTGTCGGCCAAAGCTAC 59.561 43.478 2.24 0.00 39.73 3.58
3507 4835 1.173913 AATTGTCGGCCAAAGCTACC 58.826 50.000 2.24 0.00 39.73 3.18
3508 4836 0.679960 ATTGTCGGCCAAAGCTACCC 60.680 55.000 2.24 0.00 39.73 3.69
3509 4837 1.774894 TTGTCGGCCAAAGCTACCCT 61.775 55.000 2.24 0.00 39.73 4.34
3510 4838 1.449778 GTCGGCCAAAGCTACCCTC 60.450 63.158 2.24 0.00 39.73 4.30
3511 4839 1.612442 TCGGCCAAAGCTACCCTCT 60.612 57.895 2.24 0.00 39.73 3.69
3512 4840 1.450312 CGGCCAAAGCTACCCTCTG 60.450 63.158 2.24 0.00 39.73 3.35
3513 4841 1.899437 CGGCCAAAGCTACCCTCTGA 61.899 60.000 2.24 0.00 39.73 3.27
3514 4842 0.548510 GGCCAAAGCTACCCTCTGAT 59.451 55.000 0.00 0.00 39.73 2.90
3515 4843 1.768870 GGCCAAAGCTACCCTCTGATA 59.231 52.381 0.00 0.00 39.73 2.15
3516 4844 2.373502 GGCCAAAGCTACCCTCTGATAT 59.626 50.000 0.00 0.00 39.73 1.63
3517 4845 3.406764 GCCAAAGCTACCCTCTGATATG 58.593 50.000 0.00 0.00 35.50 1.78
3518 4846 3.406764 CCAAAGCTACCCTCTGATATGC 58.593 50.000 0.00 0.00 0.00 3.14
3519 4847 3.181451 CCAAAGCTACCCTCTGATATGCA 60.181 47.826 0.00 0.00 0.00 3.96
3520 4848 4.454678 CAAAGCTACCCTCTGATATGCAA 58.545 43.478 0.00 0.00 0.00 4.08
3521 4849 4.778213 AAGCTACCCTCTGATATGCAAA 57.222 40.909 0.00 0.00 0.00 3.68
3522 4850 4.348863 AGCTACCCTCTGATATGCAAAG 57.651 45.455 0.00 0.00 0.00 2.77
3523 4851 3.713764 AGCTACCCTCTGATATGCAAAGT 59.286 43.478 0.00 0.00 0.00 2.66
3524 4852 4.164988 AGCTACCCTCTGATATGCAAAGTT 59.835 41.667 0.00 0.00 0.00 2.66
3525 4853 4.884164 GCTACCCTCTGATATGCAAAGTTT 59.116 41.667 0.00 0.00 0.00 2.66
3526 4854 6.055588 GCTACCCTCTGATATGCAAAGTTTA 58.944 40.000 0.00 0.00 0.00 2.01
3527 4855 6.542370 GCTACCCTCTGATATGCAAAGTTTAA 59.458 38.462 0.00 0.00 0.00 1.52
3528 4856 7.254932 GCTACCCTCTGATATGCAAAGTTTAAG 60.255 40.741 0.00 0.00 0.00 1.85
3529 4857 5.358160 ACCCTCTGATATGCAAAGTTTAAGC 59.642 40.000 0.00 0.00 0.00 3.09
3530 4858 5.357878 CCCTCTGATATGCAAAGTTTAAGCA 59.642 40.000 3.37 3.37 43.14 3.91
3532 4860 7.417116 CCCTCTGATATGCAAAGTTTAAGCATT 60.417 37.037 16.03 6.90 45.98 3.56
3533 4861 7.646922 CCTCTGATATGCAAAGTTTAAGCATTC 59.353 37.037 16.03 13.45 45.98 2.67
3534 4862 8.054152 TCTGATATGCAAAGTTTAAGCATTCA 57.946 30.769 16.03 16.05 45.98 2.57
3535 4863 8.689061 TCTGATATGCAAAGTTTAAGCATTCAT 58.311 29.630 16.03 7.13 45.98 2.57
3536 4864 8.861033 TGATATGCAAAGTTTAAGCATTCATC 57.139 30.769 16.03 14.00 45.98 2.92
3537 4865 8.468399 TGATATGCAAAGTTTAAGCATTCATCA 58.532 29.630 16.03 15.78 45.98 3.07
3538 4866 6.956299 ATGCAAAGTTTAAGCATTCATCAC 57.044 33.333 7.43 0.00 45.98 3.06
3539 4867 6.088016 TGCAAAGTTTAAGCATTCATCACT 57.912 33.333 0.00 0.00 32.55 3.41
3540 4868 6.514947 TGCAAAGTTTAAGCATTCATCACTT 58.485 32.000 0.00 0.00 32.55 3.16
3541 4869 6.421501 TGCAAAGTTTAAGCATTCATCACTTG 59.578 34.615 0.00 0.00 32.55 3.16
3542 4870 6.642131 GCAAAGTTTAAGCATTCATCACTTGA 59.358 34.615 0.00 0.00 0.00 3.02
3543 4871 7.148853 GCAAAGTTTAAGCATTCATCACTTGAG 60.149 37.037 0.00 0.00 35.27 3.02
3544 4872 7.750229 AAGTTTAAGCATTCATCACTTGAGA 57.250 32.000 0.00 0.00 35.27 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.634397 ACATACCATCCACAAGTCTGG 57.366 47.619 0.00 0.00 34.84 3.86
1 2 4.405680 TCCTACATACCATCCACAAGTCTG 59.594 45.833 0.00 0.00 0.00 3.51
17 18 5.280368 CCCTAGCACATCATCAATCCTACAT 60.280 44.000 0.00 0.00 0.00 2.29
47 48 1.538629 CAGCCCCCAAACCCCAAAT 60.539 57.895 0.00 0.00 0.00 2.32
48 49 2.122636 CAGCCCCCAAACCCCAAA 60.123 61.111 0.00 0.00 0.00 3.28
49 50 4.247130 CCAGCCCCCAAACCCCAA 62.247 66.667 0.00 0.00 0.00 4.12
53 54 2.763988 AAATCCCCAGCCCCCAAACC 62.764 60.000 0.00 0.00 0.00 3.27
54 55 1.229496 AAATCCCCAGCCCCCAAAC 60.229 57.895 0.00 0.00 0.00 2.93
55 56 1.229464 CAAATCCCCAGCCCCCAAA 60.229 57.895 0.00 0.00 0.00 3.28
56 57 2.449312 CAAATCCCCAGCCCCCAA 59.551 61.111 0.00 0.00 0.00 4.12
57 58 3.682409 CCAAATCCCCAGCCCCCA 61.682 66.667 0.00 0.00 0.00 4.96
58 59 4.480476 CCCAAATCCCCAGCCCCC 62.480 72.222 0.00 0.00 0.00 5.40
59 60 4.480476 CCCCAAATCCCCAGCCCC 62.480 72.222 0.00 0.00 0.00 5.80
60 61 2.763988 AAACCCCAAATCCCCAGCCC 62.764 60.000 0.00 0.00 0.00 5.19
61 62 1.229496 AAACCCCAAATCCCCAGCC 60.229 57.895 0.00 0.00 0.00 4.85
62 63 1.552799 CCAAACCCCAAATCCCCAGC 61.553 60.000 0.00 0.00 0.00 4.85
63 64 0.909133 CCCAAACCCCAAATCCCCAG 60.909 60.000 0.00 0.00 0.00 4.45
64 65 1.159664 CCCAAACCCCAAATCCCCA 59.840 57.895 0.00 0.00 0.00 4.96
65 66 1.615124 CCCCAAACCCCAAATCCCC 60.615 63.158 0.00 0.00 0.00 4.81
66 67 1.615124 CCCCCAAACCCCAAATCCC 60.615 63.158 0.00 0.00 0.00 3.85
67 68 2.297895 GCCCCCAAACCCCAAATCC 61.298 63.158 0.00 0.00 0.00 3.01
68 69 1.229496 AGCCCCCAAACCCCAAATC 60.229 57.895 0.00 0.00 0.00 2.17
135 136 4.947147 TCGCCACCAACCACCAGC 62.947 66.667 0.00 0.00 0.00 4.85
160 161 6.097915 TCGTGAGATCTTAACTGAAAACCT 57.902 37.500 0.00 0.00 33.31 3.50
168 169 3.511934 ACCAAGCTCGTGAGATCTTAACT 59.488 43.478 0.00 0.00 44.02 2.24
180 181 0.878961 GAACGGTTCACCAAGCTCGT 60.879 55.000 15.70 0.00 35.14 4.18
243 244 2.874014 AGCAGGATCAGATCTCGATCA 58.126 47.619 24.26 0.00 40.93 2.92
246 247 3.818210 GAGTAAGCAGGATCAGATCTCGA 59.182 47.826 10.36 0.00 0.00 4.04
389 395 0.110056 GCATGACGACACCAAGCTTG 60.110 55.000 19.93 19.93 0.00 4.01
399 405 0.517316 GTTTCCACAGGCATGACGAC 59.483 55.000 4.84 0.00 0.00 4.34
412 418 6.348950 CCAAATCGTAATGCTAAGTGTTTCCA 60.349 38.462 0.00 0.00 0.00 3.53
462 469 7.356089 AGACCTATATTGTACACGGATTGAA 57.644 36.000 0.00 0.00 0.00 2.69
472 479 5.013183 AGGCCCATCAAGACCTATATTGTAC 59.987 44.000 0.00 0.00 0.00 2.90
487 494 0.409092 ATGGTTGAACAGGCCCATCA 59.591 50.000 0.00 0.00 32.20 3.07
503 510 8.908786 TTAAGGAAACATGCTAATCTAGATGG 57.091 34.615 5.86 3.89 0.00 3.51
561 572 9.651913 TTACATTGCAAGAAAAAGAAAGAAAGT 57.348 25.926 4.94 0.00 0.00 2.66
580 591 5.499139 ACACTGTCACAACCTTTACATTG 57.501 39.130 0.00 0.00 0.00 2.82
671 682 9.941325 TTTACCATTATGCAATGTGAGAAAAAT 57.059 25.926 0.00 0.00 40.04 1.82
708 719 8.489489 AGTTAGATCTTAGATGAATCAAGGCAA 58.511 33.333 0.00 0.00 0.00 4.52
738 749 0.834612 AGACGGAGAAACCAACACCA 59.165 50.000 0.00 0.00 38.90 4.17
750 761 0.179089 CCTGCTCAATGGAGACGGAG 60.179 60.000 0.00 0.00 44.26 4.63
754 765 0.107459 GGGACCTGCTCAATGGAGAC 60.107 60.000 0.00 0.00 44.26 3.36
772 788 6.183360 ACAAATCACTATATGGTGCACATTGG 60.183 38.462 20.43 9.05 41.03 3.16
917 942 1.696884 CTTCCTTCCATCTCTAGGGGC 59.303 57.143 0.00 0.00 0.00 5.80
950 975 6.037830 CACGAATATTTACCAGGGTTTACCAG 59.962 42.308 0.00 0.00 43.89 4.00
1668 1703 0.459237 CTCCTACTGACTGCGCCTTG 60.459 60.000 4.18 0.00 0.00 3.61
1686 1721 1.138266 ACAGTACGAGGTGCAACAACT 59.862 47.619 3.64 0.00 39.98 3.16
1701 1736 5.452776 CCTTCGCCATGGTATCTTTACAGTA 60.453 44.000 14.67 0.00 0.00 2.74
1983 2018 1.890041 TGCCGAGACAACAAACCCG 60.890 57.895 0.00 0.00 0.00 5.28
2001 2036 1.001641 GAGGGCCATGAGTGCAAGT 60.002 57.895 6.18 0.00 0.00 3.16
2002 2037 1.751927 GGAGGGCCATGAGTGCAAG 60.752 63.158 6.18 0.00 0.00 4.01
2055 2090 1.450312 GCCAAGGGACACCGATGAG 60.450 63.158 0.00 0.00 43.47 2.90
2100 2135 1.745115 ATCCATGTGGTTCACGGCG 60.745 57.895 4.80 4.80 37.14 6.46
2208 2243 0.815734 CCTTTGCAGCCTCCAGAATG 59.184 55.000 0.00 0.00 0.00 2.67
2283 2318 7.553044 ACTGAACTAAAAATACAGAGGTATGCC 59.447 37.037 0.00 0.00 40.09 4.40
2354 2389 9.206870 GAAAAGAACAGGCAAAAATAATCATCA 57.793 29.630 0.00 0.00 0.00 3.07
2667 2706 3.291809 TCTTGCTGCACAATTCACATG 57.708 42.857 0.00 0.00 37.72 3.21
2743 3131 6.322201 CCTCATCTTACCTTTGCATATGGTTT 59.678 38.462 4.56 0.00 35.92 3.27
2779 3167 6.238402 GCAAAGGCCTTAATAAGTACTAGCAC 60.238 42.308 20.84 0.00 0.00 4.40
2879 3368 3.670625 ACTGCATACGCTACAGGAAAAA 58.329 40.909 0.00 0.00 39.64 1.94
2881 3370 2.496070 AGACTGCATACGCTACAGGAAA 59.504 45.455 0.00 0.00 39.64 3.13
2929 4044 2.799917 GCAAGTCGTGTCTGAACTCTGT 60.800 50.000 0.00 0.00 0.00 3.41
2930 4045 1.789464 GCAAGTCGTGTCTGAACTCTG 59.211 52.381 0.00 0.00 0.00 3.35
2963 4078 0.034059 AGTGCCTCAGTGAACGGAAG 59.966 55.000 2.62 0.00 0.00 3.46
2965 4080 1.000506 GTTAGTGCCTCAGTGAACGGA 59.999 52.381 2.62 0.00 0.00 4.69
2966 4081 1.429463 GTTAGTGCCTCAGTGAACGG 58.571 55.000 0.00 0.00 0.00 4.44
2967 4082 1.000955 AGGTTAGTGCCTCAGTGAACG 59.999 52.381 0.00 0.00 32.39 3.95
2969 4084 3.507411 ACTAGGTTAGTGCCTCAGTGAA 58.493 45.455 0.00 0.00 39.94 3.18
2971 4086 3.589988 CAACTAGGTTAGTGCCTCAGTG 58.410 50.000 0.00 0.00 39.39 3.66
2972 4087 2.028020 GCAACTAGGTTAGTGCCTCAGT 60.028 50.000 0.00 0.00 39.39 3.41
2973 4088 2.234908 AGCAACTAGGTTAGTGCCTCAG 59.765 50.000 0.00 0.00 39.39 3.35
2974 4089 2.028112 CAGCAACTAGGTTAGTGCCTCA 60.028 50.000 0.00 0.00 39.39 3.86
2975 4090 2.233922 TCAGCAACTAGGTTAGTGCCTC 59.766 50.000 0.00 0.00 39.39 4.70
2976 4091 2.257207 TCAGCAACTAGGTTAGTGCCT 58.743 47.619 0.00 0.00 39.39 4.75
3012 4129 5.719563 AGTACTTTTGGGGGTGGAAATATTG 59.280 40.000 0.00 0.00 0.00 1.90
3056 4173 0.739462 CGCATGGACTAACCGAAGCA 60.739 55.000 0.00 0.00 42.61 3.91
3058 4175 1.722011 AACGCATGGACTAACCGAAG 58.278 50.000 0.00 0.00 42.61 3.79
3111 4229 3.053693 ACTTGCATTAGTAATGGGAGGCA 60.054 43.478 21.56 11.75 39.31 4.75
3114 4232 7.308229 GCTCAATACTTGCATTAGTAATGGGAG 60.308 40.741 21.56 12.76 35.07 4.30
3115 4233 6.486657 GCTCAATACTTGCATTAGTAATGGGA 59.513 38.462 21.56 5.22 35.07 4.37
3116 4234 6.262944 TGCTCAATACTTGCATTAGTAATGGG 59.737 38.462 21.56 10.24 35.83 4.00
3117 4235 7.263100 TGCTCAATACTTGCATTAGTAATGG 57.737 36.000 21.56 9.78 39.31 3.16
3119 4237 7.282585 TCCTGCTCAATACTTGCATTAGTAAT 58.717 34.615 2.47 0.00 34.50 1.89
3120 4238 6.649155 TCCTGCTCAATACTTGCATTAGTAA 58.351 36.000 2.47 0.00 34.50 2.24
3121 4239 6.098266 TCTCCTGCTCAATACTTGCATTAGTA 59.902 38.462 0.84 0.84 36.07 1.82
3122 4240 5.102953 TCCTGCTCAATACTTGCATTAGT 57.897 39.130 0.00 0.00 36.07 2.24
3123 4241 5.363101 TCTCCTGCTCAATACTTGCATTAG 58.637 41.667 0.00 0.00 36.07 1.73
3124 4242 5.357742 TCTCCTGCTCAATACTTGCATTA 57.642 39.130 0.00 0.00 36.07 1.90
3125 4243 4.226427 TCTCCTGCTCAATACTTGCATT 57.774 40.909 0.00 0.00 36.07 3.56
3150 4478 6.317088 CGTGCCTTTATATAAGGATGCAATG 58.683 40.000 14.34 2.02 39.81 2.82
3152 4480 4.215399 GCGTGCCTTTATATAAGGATGCAA 59.785 41.667 12.61 0.00 39.81 4.08
3177 4505 0.530870 GGAACACTCTCGGCCTATGC 60.531 60.000 0.00 0.00 0.00 3.14
3180 4508 1.684734 GGGGAACACTCTCGGCCTA 60.685 63.158 0.00 0.00 0.00 3.93
3241 4569 8.575589 TGAAGCACACATATGTTTCAACTTTAT 58.424 29.630 15.18 0.00 43.96 1.40
3285 4613 1.881973 TGCTTTTGTGAGATGAGCCAC 59.118 47.619 0.00 0.00 32.53 5.01
3288 4616 3.688185 TCATCTGCTTTTGTGAGATGAGC 59.312 43.478 0.00 0.00 44.55 4.26
3290 4618 5.046807 TCTCTCATCTGCTTTTGTGAGATGA 60.047 40.000 0.00 0.00 46.29 2.92
3323 4651 2.299993 TCACCTCATCTGCATCGTTC 57.700 50.000 0.00 0.00 0.00 3.95
3324 4652 2.768253 TTCACCTCATCTGCATCGTT 57.232 45.000 0.00 0.00 0.00 3.85
3325 4653 2.027745 ACTTTCACCTCATCTGCATCGT 60.028 45.455 0.00 0.00 0.00 3.73
3326 4654 2.625737 ACTTTCACCTCATCTGCATCG 58.374 47.619 0.00 0.00 0.00 3.84
3327 4655 5.819379 TCATTACTTTCACCTCATCTGCATC 59.181 40.000 0.00 0.00 0.00 3.91
3328 4656 5.748402 TCATTACTTTCACCTCATCTGCAT 58.252 37.500 0.00 0.00 0.00 3.96
3329 4657 5.164620 TCATTACTTTCACCTCATCTGCA 57.835 39.130 0.00 0.00 0.00 4.41
3330 4658 5.181748 ACTCATTACTTTCACCTCATCTGC 58.818 41.667 0.00 0.00 0.00 4.26
3331 4659 8.777865 TTTACTCATTACTTTCACCTCATCTG 57.222 34.615 0.00 0.00 0.00 2.90
3332 4660 8.598041 ACTTTACTCATTACTTTCACCTCATCT 58.402 33.333 0.00 0.00 0.00 2.90
3333 4661 8.779354 ACTTTACTCATTACTTTCACCTCATC 57.221 34.615 0.00 0.00 0.00 2.92
3342 4670 9.908152 GCCAACAATTACTTTACTCATTACTTT 57.092 29.630 0.00 0.00 0.00 2.66
3343 4671 8.520351 GGCCAACAATTACTTTACTCATTACTT 58.480 33.333 0.00 0.00 0.00 2.24
3344 4672 7.122204 GGGCCAACAATTACTTTACTCATTACT 59.878 37.037 4.39 0.00 0.00 2.24
3345 4673 7.094118 TGGGCCAACAATTACTTTACTCATTAC 60.094 37.037 2.13 0.00 0.00 1.89
3346 4674 6.948886 TGGGCCAACAATTACTTTACTCATTA 59.051 34.615 2.13 0.00 0.00 1.90
3347 4675 5.777732 TGGGCCAACAATTACTTTACTCATT 59.222 36.000 2.13 0.00 0.00 2.57
3348 4676 5.329399 TGGGCCAACAATTACTTTACTCAT 58.671 37.500 2.13 0.00 0.00 2.90
3349 4677 4.730966 TGGGCCAACAATTACTTTACTCA 58.269 39.130 2.13 0.00 0.00 3.41
3350 4678 5.243060 AGTTGGGCCAACAATTACTTTACTC 59.757 40.000 41.66 17.13 45.66 2.59
3351 4679 5.144832 AGTTGGGCCAACAATTACTTTACT 58.855 37.500 41.66 20.52 45.66 2.24
3352 4680 5.462530 AGTTGGGCCAACAATTACTTTAC 57.537 39.130 41.66 18.65 45.66 2.01
3353 4681 7.784470 ATAAGTTGGGCCAACAATTACTTTA 57.216 32.000 41.66 30.25 45.66 1.85
3354 4682 6.680148 ATAAGTTGGGCCAACAATTACTTT 57.320 33.333 41.66 29.33 45.66 2.66
3355 4683 6.680148 AATAAGTTGGGCCAACAATTACTT 57.320 33.333 41.66 30.43 45.66 2.24
3356 4684 6.722129 TGTAATAAGTTGGGCCAACAATTACT 59.278 34.615 42.24 31.54 45.66 2.24
3357 4685 6.926313 TGTAATAAGTTGGGCCAACAATTAC 58.074 36.000 40.42 40.42 45.66 1.89
3358 4686 7.233757 ACTTGTAATAAGTTGGGCCAACAATTA 59.766 33.333 41.66 36.11 45.66 1.40
3359 4687 6.042666 ACTTGTAATAAGTTGGGCCAACAATT 59.957 34.615 41.66 36.96 45.66 2.32
3360 4688 5.542251 ACTTGTAATAAGTTGGGCCAACAAT 59.458 36.000 41.66 32.30 45.66 2.71
3361 4689 4.896482 ACTTGTAATAAGTTGGGCCAACAA 59.104 37.500 41.66 31.69 45.66 2.83
3362 4690 4.475345 ACTTGTAATAAGTTGGGCCAACA 58.525 39.130 41.66 27.73 45.66 3.33
3363 4691 5.106038 GGTACTTGTAATAAGTTGGGCCAAC 60.106 44.000 36.51 36.51 43.83 3.77
3364 4692 5.011586 GGTACTTGTAATAAGTTGGGCCAA 58.988 41.667 16.66 16.66 0.00 4.52
3365 4693 4.043059 TGGTACTTGTAATAAGTTGGGCCA 59.957 41.667 0.00 0.00 0.00 5.36
3366 4694 4.591929 TGGTACTTGTAATAAGTTGGGCC 58.408 43.478 0.00 0.00 0.00 5.80
3367 4695 6.485648 CCTATGGTACTTGTAATAAGTTGGGC 59.514 42.308 0.00 0.00 0.00 5.36
3368 4696 7.798071 TCCTATGGTACTTGTAATAAGTTGGG 58.202 38.462 0.00 0.00 0.00 4.12
3369 4697 7.931948 CCTCCTATGGTACTTGTAATAAGTTGG 59.068 40.741 0.00 0.00 0.00 3.77
3370 4698 8.483758 ACCTCCTATGGTACTTGTAATAAGTTG 58.516 37.037 0.00 0.00 38.79 3.16
3371 4699 8.619683 ACCTCCTATGGTACTTGTAATAAGTT 57.380 34.615 0.00 0.00 38.79 2.66
3372 4700 8.619683 AACCTCCTATGGTACTTGTAATAAGT 57.380 34.615 0.00 0.00 39.83 2.24
3373 4701 9.901172 AAAACCTCCTATGGTACTTGTAATAAG 57.099 33.333 0.00 0.00 39.83 1.73
3374 4702 9.675464 CAAAACCTCCTATGGTACTTGTAATAA 57.325 33.333 0.00 0.00 39.83 1.40
3375 4703 8.269317 CCAAAACCTCCTATGGTACTTGTAATA 58.731 37.037 0.00 0.00 39.83 0.98
3376 4704 7.116736 CCAAAACCTCCTATGGTACTTGTAAT 58.883 38.462 0.00 0.00 39.83 1.89
3377 4705 6.478129 CCAAAACCTCCTATGGTACTTGTAA 58.522 40.000 0.00 0.00 39.83 2.41
3378 4706 5.045432 CCCAAAACCTCCTATGGTACTTGTA 60.045 44.000 0.00 0.00 39.83 2.41
3379 4707 4.263771 CCCAAAACCTCCTATGGTACTTGT 60.264 45.833 0.00 0.00 39.83 3.16
3380 4708 4.263771 ACCCAAAACCTCCTATGGTACTTG 60.264 45.833 0.00 0.00 39.83 3.16
3381 4709 3.920841 ACCCAAAACCTCCTATGGTACTT 59.079 43.478 0.00 0.00 39.83 2.24
3382 4710 3.265995 CACCCAAAACCTCCTATGGTACT 59.734 47.826 0.00 0.00 39.83 2.73
3383 4711 3.264964 TCACCCAAAACCTCCTATGGTAC 59.735 47.826 0.00 0.00 39.83 3.34
3384 4712 3.533146 TCACCCAAAACCTCCTATGGTA 58.467 45.455 0.00 0.00 39.83 3.25
3385 4713 2.354328 TCACCCAAAACCTCCTATGGT 58.646 47.619 0.00 0.00 43.11 3.55
3386 4714 3.449746 TTCACCCAAAACCTCCTATGG 57.550 47.619 0.00 0.00 0.00 2.74
3387 4715 7.475137 TTTTATTCACCCAAAACCTCCTATG 57.525 36.000 0.00 0.00 0.00 2.23
3388 4716 6.154534 GCTTTTATTCACCCAAAACCTCCTAT 59.845 38.462 0.00 0.00 0.00 2.57
3389 4717 5.479027 GCTTTTATTCACCCAAAACCTCCTA 59.521 40.000 0.00 0.00 0.00 2.94
3390 4718 4.283467 GCTTTTATTCACCCAAAACCTCCT 59.717 41.667 0.00 0.00 0.00 3.69
3391 4719 4.283467 AGCTTTTATTCACCCAAAACCTCC 59.717 41.667 0.00 0.00 0.00 4.30
3392 4720 5.468540 AGCTTTTATTCACCCAAAACCTC 57.531 39.130 0.00 0.00 0.00 3.85
3393 4721 5.887214 AAGCTTTTATTCACCCAAAACCT 57.113 34.783 0.00 0.00 0.00 3.50
3394 4722 6.052360 TGAAAGCTTTTATTCACCCAAAACC 58.948 36.000 14.05 0.00 30.94 3.27
3395 4723 7.728847 ATGAAAGCTTTTATTCACCCAAAAC 57.271 32.000 14.05 0.00 38.29 2.43
3396 4724 9.267084 GTAATGAAAGCTTTTATTCACCCAAAA 57.733 29.630 26.87 9.28 38.29 2.44
3397 4725 7.596995 CGTAATGAAAGCTTTTATTCACCCAAA 59.403 33.333 26.87 9.90 38.29 3.28
3398 4726 7.087639 CGTAATGAAAGCTTTTATTCACCCAA 58.912 34.615 26.87 10.51 38.29 4.12
3399 4727 6.207810 ACGTAATGAAAGCTTTTATTCACCCA 59.792 34.615 26.87 12.75 38.29 4.51
3400 4728 6.617879 ACGTAATGAAAGCTTTTATTCACCC 58.382 36.000 26.87 15.07 38.29 4.61
3401 4729 7.061789 CCAACGTAATGAAAGCTTTTATTCACC 59.938 37.037 26.87 16.96 38.29 4.02
3402 4730 7.061789 CCCAACGTAATGAAAGCTTTTATTCAC 59.938 37.037 26.87 21.00 38.29 3.18
3403 4731 7.087639 CCCAACGTAATGAAAGCTTTTATTCA 58.912 34.615 26.87 15.38 39.66 2.57
3404 4732 6.034577 GCCCAACGTAATGAAAGCTTTTATTC 59.965 38.462 26.87 18.49 30.39 1.75
3405 4733 5.867174 GCCCAACGTAATGAAAGCTTTTATT 59.133 36.000 26.44 26.44 32.19 1.40
3406 4734 5.407502 GCCCAACGTAATGAAAGCTTTTAT 58.592 37.500 14.05 12.12 0.00 1.40
3407 4735 4.321378 GGCCCAACGTAATGAAAGCTTTTA 60.321 41.667 14.05 9.97 0.00 1.52
3408 4736 3.554129 GGCCCAACGTAATGAAAGCTTTT 60.554 43.478 14.05 0.00 0.00 2.27
3409 4737 2.029380 GGCCCAACGTAATGAAAGCTTT 60.029 45.455 12.53 12.53 0.00 3.51
3410 4738 1.544246 GGCCCAACGTAATGAAAGCTT 59.456 47.619 0.00 0.00 0.00 3.74
3411 4739 1.173913 GGCCCAACGTAATGAAAGCT 58.826 50.000 0.00 0.00 0.00 3.74
3412 4740 0.885196 TGGCCCAACGTAATGAAAGC 59.115 50.000 0.00 0.00 0.00 3.51
3413 4741 2.941428 GTTGGCCCAACGTAATGAAAG 58.059 47.619 11.51 0.00 34.63 2.62
3440 4768 2.416162 GCACGGTGTTCCACTTCAAAAA 60.416 45.455 10.24 0.00 34.40 1.94
3441 4769 1.133407 GCACGGTGTTCCACTTCAAAA 59.867 47.619 10.24 0.00 34.40 2.44
3442 4770 0.736053 GCACGGTGTTCCACTTCAAA 59.264 50.000 10.24 0.00 34.40 2.69
3443 4771 0.393132 TGCACGGTGTTCCACTTCAA 60.393 50.000 10.24 0.00 34.40 2.69
3444 4772 0.179032 ATGCACGGTGTTCCACTTCA 60.179 50.000 10.24 0.00 34.40 3.02
3445 4773 0.951558 AATGCACGGTGTTCCACTTC 59.048 50.000 10.24 0.00 34.40 3.01
3446 4774 0.951558 GAATGCACGGTGTTCCACTT 59.048 50.000 10.24 0.00 34.40 3.16
3447 4775 0.889186 GGAATGCACGGTGTTCCACT 60.889 55.000 19.91 0.00 40.82 4.00
3448 4776 1.169661 TGGAATGCACGGTGTTCCAC 61.170 55.000 22.34 7.84 44.67 4.02
3449 4777 1.149401 TGGAATGCACGGTGTTCCA 59.851 52.632 22.34 22.34 46.67 3.53
3450 4778 0.887933 AATGGAATGCACGGTGTTCC 59.112 50.000 18.65 18.65 41.37 3.62
3451 4779 3.190535 AGTTAATGGAATGCACGGTGTTC 59.809 43.478 10.24 6.48 0.00 3.18
3452 4780 3.153919 AGTTAATGGAATGCACGGTGTT 58.846 40.909 10.24 0.00 0.00 3.32
3453 4781 2.790433 AGTTAATGGAATGCACGGTGT 58.210 42.857 10.24 0.00 0.00 4.16
3454 4782 3.938963 ACTAGTTAATGGAATGCACGGTG 59.061 43.478 3.15 3.15 0.00 4.94
3455 4783 3.938963 CACTAGTTAATGGAATGCACGGT 59.061 43.478 0.00 0.00 0.00 4.83
3456 4784 3.312421 CCACTAGTTAATGGAATGCACGG 59.688 47.826 0.00 0.00 38.34 4.94
3457 4785 4.034048 GTCCACTAGTTAATGGAATGCACG 59.966 45.833 1.55 0.00 46.53 5.34
3458 4786 4.034048 CGTCCACTAGTTAATGGAATGCAC 59.966 45.833 1.55 0.00 46.53 4.57
3459 4787 4.188462 CGTCCACTAGTTAATGGAATGCA 58.812 43.478 1.55 0.00 46.53 3.96
3460 4788 3.002348 GCGTCCACTAGTTAATGGAATGC 59.998 47.826 1.55 5.81 46.53 3.56
3461 4789 3.245284 CGCGTCCACTAGTTAATGGAATG 59.755 47.826 0.00 0.17 46.53 2.67
3462 4790 3.131577 TCGCGTCCACTAGTTAATGGAAT 59.868 43.478 5.77 0.00 46.53 3.01
3463 4791 2.492881 TCGCGTCCACTAGTTAATGGAA 59.507 45.455 5.77 0.00 46.53 3.53
3464 4792 2.093890 TCGCGTCCACTAGTTAATGGA 58.906 47.619 5.77 0.00 42.88 3.41
3465 4793 2.159282 AGTCGCGTCCACTAGTTAATGG 60.159 50.000 5.77 0.00 37.32 3.16
3466 4794 3.146618 AGTCGCGTCCACTAGTTAATG 57.853 47.619 5.77 0.00 0.00 1.90
3467 4795 4.970662 TTAGTCGCGTCCACTAGTTAAT 57.029 40.909 5.77 0.00 0.00 1.40
3468 4796 4.764679 TTTAGTCGCGTCCACTAGTTAA 57.235 40.909 5.77 0.00 0.00 2.01
3469 4797 4.970662 ATTTAGTCGCGTCCACTAGTTA 57.029 40.909 5.77 0.00 0.00 2.24
3470 4798 3.863142 ATTTAGTCGCGTCCACTAGTT 57.137 42.857 5.77 0.00 0.00 2.24
3471 4799 3.057033 ACAATTTAGTCGCGTCCACTAGT 60.057 43.478 5.77 0.00 0.00 2.57
3472 4800 3.508762 ACAATTTAGTCGCGTCCACTAG 58.491 45.455 5.77 0.00 0.00 2.57
3473 4801 3.504863 GACAATTTAGTCGCGTCCACTA 58.495 45.455 5.77 3.71 0.00 2.74
3474 4802 2.334838 GACAATTTAGTCGCGTCCACT 58.665 47.619 5.77 4.89 0.00 4.00
3475 4803 2.782198 GACAATTTAGTCGCGTCCAC 57.218 50.000 5.77 0.00 0.00 4.02
3483 4811 2.488153 AGCTTTGGCCGACAATTTAGTC 59.512 45.455 0.00 0.00 39.21 2.59
3484 4812 2.514803 AGCTTTGGCCGACAATTTAGT 58.485 42.857 0.00 0.00 39.21 2.24
3485 4813 3.181500 GGTAGCTTTGGCCGACAATTTAG 60.181 47.826 0.00 0.00 39.21 1.85
3486 4814 2.750712 GGTAGCTTTGGCCGACAATTTA 59.249 45.455 0.00 0.00 39.21 1.40
3487 4815 1.544246 GGTAGCTTTGGCCGACAATTT 59.456 47.619 0.00 0.00 39.21 1.82
3488 4816 1.173913 GGTAGCTTTGGCCGACAATT 58.826 50.000 0.00 0.00 39.21 2.32
3489 4817 0.679960 GGGTAGCTTTGGCCGACAAT 60.680 55.000 0.00 0.00 39.21 2.71
3490 4818 1.302993 GGGTAGCTTTGGCCGACAA 60.303 57.895 0.00 0.00 39.73 3.18
3491 4819 2.180159 GAGGGTAGCTTTGGCCGACA 62.180 60.000 0.00 0.00 39.73 4.35
3492 4820 1.449778 GAGGGTAGCTTTGGCCGAC 60.450 63.158 0.00 0.00 39.73 4.79
3493 4821 1.612442 AGAGGGTAGCTTTGGCCGA 60.612 57.895 0.00 0.00 39.73 5.54
3494 4822 1.450312 CAGAGGGTAGCTTTGGCCG 60.450 63.158 0.00 0.00 39.73 6.13
3495 4823 0.548510 ATCAGAGGGTAGCTTTGGCC 59.451 55.000 0.00 0.00 39.73 5.36
3496 4824 3.406764 CATATCAGAGGGTAGCTTTGGC 58.593 50.000 0.00 0.00 39.06 4.52
3497 4825 3.181451 TGCATATCAGAGGGTAGCTTTGG 60.181 47.826 0.00 0.00 0.00 3.28
3498 4826 4.077300 TGCATATCAGAGGGTAGCTTTG 57.923 45.455 0.00 0.00 0.00 2.77
3499 4827 4.778213 TTGCATATCAGAGGGTAGCTTT 57.222 40.909 0.00 0.00 0.00 3.51
3500 4828 4.164988 ACTTTGCATATCAGAGGGTAGCTT 59.835 41.667 0.00 0.00 31.62 3.74
3501 4829 3.713764 ACTTTGCATATCAGAGGGTAGCT 59.286 43.478 0.00 0.00 31.62 3.32
3502 4830 4.078639 ACTTTGCATATCAGAGGGTAGC 57.921 45.455 0.00 0.00 31.62 3.58
3503 4831 7.254932 GCTTAAACTTTGCATATCAGAGGGTAG 60.255 40.741 0.00 0.00 31.62 3.18
3504 4832 6.542370 GCTTAAACTTTGCATATCAGAGGGTA 59.458 38.462 0.00 0.00 31.62 3.69
3505 4833 5.358160 GCTTAAACTTTGCATATCAGAGGGT 59.642 40.000 0.00 0.00 31.62 4.34
3506 4834 5.357878 TGCTTAAACTTTGCATATCAGAGGG 59.642 40.000 0.00 0.00 31.62 4.30
3507 4835 6.441093 TGCTTAAACTTTGCATATCAGAGG 57.559 37.500 0.00 0.00 31.62 3.69
3508 4836 8.186163 TGAATGCTTAAACTTTGCATATCAGAG 58.814 33.333 0.00 0.00 45.29 3.35
3509 4837 8.054152 TGAATGCTTAAACTTTGCATATCAGA 57.946 30.769 0.00 0.00 45.29 3.27
3510 4838 8.867112 ATGAATGCTTAAACTTTGCATATCAG 57.133 30.769 0.00 0.00 45.29 2.90
3511 4839 8.468399 TGATGAATGCTTAAACTTTGCATATCA 58.532 29.630 0.00 0.00 45.29 2.15
3512 4840 8.749499 GTGATGAATGCTTAAACTTTGCATATC 58.251 33.333 0.00 0.00 45.29 1.63
3513 4841 8.472413 AGTGATGAATGCTTAAACTTTGCATAT 58.528 29.630 0.00 0.00 45.29 1.78
3514 4842 7.829725 AGTGATGAATGCTTAAACTTTGCATA 58.170 30.769 0.00 0.00 45.29 3.14
3516 4844 6.088016 AGTGATGAATGCTTAAACTTTGCA 57.912 33.333 0.00 0.00 41.13 4.08
3517 4845 6.642131 TCAAGTGATGAATGCTTAAACTTTGC 59.358 34.615 0.00 0.00 34.30 3.68
3518 4846 8.077991 TCTCAAGTGATGAATGCTTAAACTTTG 58.922 33.333 0.00 0.00 37.67 2.77
3519 4847 8.169977 TCTCAAGTGATGAATGCTTAAACTTT 57.830 30.769 0.00 0.00 37.67 2.66
3520 4848 7.750229 TCTCAAGTGATGAATGCTTAAACTT 57.250 32.000 0.00 0.00 37.67 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.