Multiple sequence alignment - TraesCS3B01G518800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G518800 chr3B 100.000 4344 0 0 1 4344 761900025 761904368 0.000000e+00 8022.0
1 TraesCS3B01G518800 chr3B 97.786 858 17 2 1 858 10685629 10684774 0.000000e+00 1478.0
2 TraesCS3B01G518800 chr3B 87.650 1085 134 0 2239 3323 761936925 761938009 0.000000e+00 1262.0
3 TraesCS3B01G518800 chr3B 82.392 744 111 14 996 1729 761933255 761933988 7.930000e-177 630.0
4 TraesCS3B01G518800 chr3B 82.114 123 22 0 4222 4344 153026555 153026677 5.940000e-19 106.0
5 TraesCS3B01G518800 chr3B 92.754 69 4 1 1565 1632 761901547 761901615 9.940000e-17 99.0
6 TraesCS3B01G518800 chr3B 92.754 69 4 1 1523 1591 761901589 761901656 9.940000e-17 99.0
7 TraesCS3B01G518800 chr3B 97.059 34 1 0 4186 4219 153026485 153026518 1.690000e-04 58.4
8 TraesCS3B01G518800 chr3A 93.511 3498 188 26 857 4344 706850050 706853518 0.000000e+00 5166.0
9 TraesCS3B01G518800 chr3A 87.648 1101 126 3 2239 3329 706922856 706923956 0.000000e+00 1271.0
10 TraesCS3B01G518800 chr3A 81.500 1173 152 28 2637 3749 706903675 706904842 0.000000e+00 904.0
11 TraesCS3B01G518800 chr3A 82.008 717 110 12 1001 1707 706911367 706912074 3.740000e-165 592.0
12 TraesCS3B01G518800 chr3A 88.172 93 8 2 1523 1612 706850754 706850846 1.650000e-19 108.0
13 TraesCS3B01G518800 chr3A 92.754 69 4 1 1565 1632 706850712 706850780 9.940000e-17 99.0
14 TraesCS3B01G518800 chr3D 93.537 3497 175 17 857 4344 572103141 572099687 0.000000e+00 5158.0
15 TraesCS3B01G518800 chr3D 88.007 1084 130 0 2240 3323 572046026 572044943 0.000000e+00 1282.0
16 TraesCS3B01G518800 chr3D 84.991 1086 159 4 2240 3323 572085497 572084414 0.000000e+00 1099.0
17 TraesCS3B01G518800 chr3D 82.524 721 106 13 1001 1711 572049382 572048672 2.220000e-172 616.0
18 TraesCS3B01G518800 chr3D 90.000 170 12 5 3596 3765 572081786 572081622 9.460000e-52 215.0
19 TraesCS3B01G518800 chr3D 88.172 93 8 2 1523 1612 572102437 572102345 1.650000e-19 108.0
20 TraesCS3B01G518800 chr7A 97.780 856 17 2 3 858 669071928 669071075 0.000000e+00 1474.0
21 TraesCS3B01G518800 chr7A 96.853 858 23 4 1 857 555644767 555645621 0.000000e+00 1432.0
22 TraesCS3B01G518800 chr7A 96.296 864 30 2 1 864 639288239 639287378 0.000000e+00 1417.0
23 TraesCS3B01G518800 chr4A 97.430 856 20 2 1 856 248258631 248259484 0.000000e+00 1458.0
24 TraesCS3B01G518800 chr4A 96.737 858 24 4 1 857 152508114 152507260 0.000000e+00 1426.0
25 TraesCS3B01G518800 chr4A 82.114 123 22 0 4222 4344 670935577 670935699 5.940000e-19 106.0
26 TraesCS3B01G518800 chr1A 96.875 864 25 2 1 864 173309933 173309072 0.000000e+00 1445.0
27 TraesCS3B01G518800 chr1A 84.286 70 8 3 4149 4216 405484817 405484885 1.010000e-06 65.8
28 TraesCS3B01G518800 chr2B 96.849 857 24 3 1 856 564853158 564852304 0.000000e+00 1430.0
29 TraesCS3B01G518800 chr2B 96.628 860 27 2 1 860 643197371 643198228 0.000000e+00 1426.0
30 TraesCS3B01G518800 chr2B 83.333 1074 170 7 2264 3331 390925520 390926590 0.000000e+00 983.0
31 TraesCS3B01G518800 chr2B 87.097 124 16 0 4221 4344 150341123 150341000 1.630000e-29 141.0
32 TraesCS3B01G518800 chr2B 92.308 39 3 0 3580 3618 779107329 779107367 6.070000e-04 56.5
33 TraesCS3B01G518800 chr2D 83.225 1073 171 7 2265 3331 323076868 323077937 0.000000e+00 976.0
34 TraesCS3B01G518800 chr2A 82.868 1074 175 7 2264 3331 407740548 407739478 0.000000e+00 955.0
35 TraesCS3B01G518800 chr2A 92.308 39 3 0 3580 3618 196123936 196123974 6.070000e-04 56.5
36 TraesCS3B01G518800 chr6B 89.247 93 9 1 4125 4217 680881886 680881977 9.870000e-22 115.0
37 TraesCS3B01G518800 chr5D 83.333 72 9 3 4150 4219 501055147 501055077 3.630000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G518800 chr3B 761900025 761904368 4343 False 2740 8022 95.169333 1 4344 3 chr3B.!!$F2 4343
1 TraesCS3B01G518800 chr3B 10684774 10685629 855 True 1478 1478 97.786000 1 858 1 chr3B.!!$R1 857
2 TraesCS3B01G518800 chr3B 761933255 761938009 4754 False 946 1262 85.021000 996 3323 2 chr3B.!!$F3 2327
3 TraesCS3B01G518800 chr3A 706850050 706853518 3468 False 1791 5166 91.479000 857 4344 3 chr3A.!!$F4 3487
4 TraesCS3B01G518800 chr3A 706922856 706923956 1100 False 1271 1271 87.648000 2239 3329 1 chr3A.!!$F3 1090
5 TraesCS3B01G518800 chr3A 706903675 706904842 1167 False 904 904 81.500000 2637 3749 1 chr3A.!!$F1 1112
6 TraesCS3B01G518800 chr3A 706911367 706912074 707 False 592 592 82.008000 1001 1707 1 chr3A.!!$F2 706
7 TraesCS3B01G518800 chr3D 572099687 572103141 3454 True 2633 5158 90.854500 857 4344 2 chr3D.!!$R3 3487
8 TraesCS3B01G518800 chr3D 572044943 572049382 4439 True 949 1282 85.265500 1001 3323 2 chr3D.!!$R1 2322
9 TraesCS3B01G518800 chr3D 572081622 572085497 3875 True 657 1099 87.495500 2240 3765 2 chr3D.!!$R2 1525
10 TraesCS3B01G518800 chr7A 669071075 669071928 853 True 1474 1474 97.780000 3 858 1 chr7A.!!$R2 855
11 TraesCS3B01G518800 chr7A 555644767 555645621 854 False 1432 1432 96.853000 1 857 1 chr7A.!!$F1 856
12 TraesCS3B01G518800 chr7A 639287378 639288239 861 True 1417 1417 96.296000 1 864 1 chr7A.!!$R1 863
13 TraesCS3B01G518800 chr4A 248258631 248259484 853 False 1458 1458 97.430000 1 856 1 chr4A.!!$F1 855
14 TraesCS3B01G518800 chr4A 152507260 152508114 854 True 1426 1426 96.737000 1 857 1 chr4A.!!$R1 856
15 TraesCS3B01G518800 chr1A 173309072 173309933 861 True 1445 1445 96.875000 1 864 1 chr1A.!!$R1 863
16 TraesCS3B01G518800 chr2B 564852304 564853158 854 True 1430 1430 96.849000 1 856 1 chr2B.!!$R2 855
17 TraesCS3B01G518800 chr2B 643197371 643198228 857 False 1426 1426 96.628000 1 860 1 chr2B.!!$F2 859
18 TraesCS3B01G518800 chr2B 390925520 390926590 1070 False 983 983 83.333000 2264 3331 1 chr2B.!!$F1 1067
19 TraesCS3B01G518800 chr2D 323076868 323077937 1069 False 976 976 83.225000 2265 3331 1 chr2D.!!$F1 1066
20 TraesCS3B01G518800 chr2A 407739478 407740548 1070 True 955 955 82.868000 2264 3331 1 chr2A.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.532573 TGTCATCGAAGAGACCCTGC 59.467 55.000 11.82 0.0 43.63 4.85 F
65 66 1.196808 CTGCCGCGTGAACAGTAAAAT 59.803 47.619 4.92 0.0 0.00 1.82 F
1026 1032 1.634757 GCGGCGTCATGATGAACACA 61.635 55.000 19.30 0.0 0.00 3.72 F
1081 1087 0.039798 GTACGTCGTCTTCACCTGCA 60.040 55.000 0.00 0.0 0.00 4.41 F
2047 3110 0.409876 ACTGAGGAGGTGCTAGGTGA 59.590 55.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1032 0.252197 GGTATGACTTTCCACCGGCT 59.748 55.0 0.0 0.0 0.0 5.52 R
1039 1045 0.253044 GTGAGCTTGCCAGGGTATGA 59.747 55.0 0.0 0.0 0.0 2.15 R
2344 5221 0.466189 GGATGCCGGTGGTGATCATT 60.466 55.0 1.9 0.0 0.0 2.57 R
2701 5586 0.969149 TGACGTTGATGCCAGAGAGT 59.031 50.0 0.0 0.0 0.0 3.24 R
3958 9220 0.116342 TCTCCCAACCTGCTGTCCTA 59.884 55.0 0.0 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.532573 TGTCATCGAAGAGACCCTGC 59.467 55.000 11.82 0.00 43.63 4.85
65 66 1.196808 CTGCCGCGTGAACAGTAAAAT 59.803 47.619 4.92 0.00 0.00 1.82
226 230 3.126171 TCGCGAACGATGAATTTGGAAAT 59.874 39.130 6.20 0.00 45.12 2.17
284 288 7.326454 TGATGAATTTGGGAAAAATATTCGCA 58.674 30.769 4.12 4.12 39.19 5.10
595 599 8.488979 GAATATTTTTCCCATATTCGTGAACG 57.511 34.615 0.00 0.00 35.11 3.95
743 748 6.713731 TTAGAGGGGGTTAGTGAGATTTTT 57.286 37.500 0.00 0.00 0.00 1.94
804 809 7.827819 AAATGACGATTTTCATAGTTCGAGA 57.172 32.000 0.00 0.00 35.02 4.04
868 873 7.363431 GTGCACTTCACTCTTTTATAAGCTTT 58.637 34.615 10.32 0.00 42.38 3.51
909 914 3.535962 CTGCGCTCCCTCTCCTCC 61.536 72.222 9.73 0.00 0.00 4.30
936 942 4.341235 GCATGCTGGCATCATATATTCCAT 59.659 41.667 11.37 0.00 33.90 3.41
961 967 7.887381 TCCTTAATAGTGAGCTAGCAAGTATC 58.113 38.462 18.83 5.69 0.00 2.24
963 969 5.476091 AATAGTGAGCTAGCAAGTATCCC 57.524 43.478 18.83 0.00 0.00 3.85
964 970 3.039252 AGTGAGCTAGCAAGTATCCCT 57.961 47.619 18.83 0.00 0.00 4.20
965 971 4.186077 AGTGAGCTAGCAAGTATCCCTA 57.814 45.455 18.83 0.00 0.00 3.53
966 972 4.148838 AGTGAGCTAGCAAGTATCCCTAG 58.851 47.826 18.83 0.00 33.41 3.02
971 977 3.612955 GCTAGCAAGTATCCCTAGCTTCG 60.613 52.174 10.63 0.00 46.48 3.79
981 987 2.091499 TCCCTAGCTTCGATCCTACCAA 60.091 50.000 0.00 0.00 0.00 3.67
1026 1032 1.634757 GCGGCGTCATGATGAACACA 61.635 55.000 19.30 0.00 0.00 3.72
1081 1087 0.039798 GTACGTCGTCTTCACCTGCA 60.040 55.000 0.00 0.00 0.00 4.41
1092 1098 3.381983 ACCTGCATCGTCGCCTCA 61.382 61.111 0.00 0.00 0.00 3.86
1110 1116 3.268103 AACCGGCGGCCTCATCTTT 62.268 57.895 28.71 7.15 0.00 2.52
1122 1128 3.887716 GCCTCATCTTTGGCTATGACATT 59.112 43.478 0.00 0.00 45.26 2.71
1155 1161 2.125673 GTCACGTCCATGGACCCG 60.126 66.667 34.05 26.88 41.76 5.28
1619 1635 5.937540 TCCGTATGCAAATATATGTTCCCTG 59.062 40.000 0.00 0.00 0.00 4.45
1646 1662 2.098614 ACATCAAAATGCCGCCACATA 58.901 42.857 0.00 0.00 36.26 2.29
1729 1746 1.326548 GCGTCACTCGTTTGTGTCTTT 59.673 47.619 0.00 0.00 42.13 2.52
1738 1755 4.874970 TCGTTTGTGTCTTTACTACCTCC 58.125 43.478 0.00 0.00 0.00 4.30
1749 1766 8.246180 TGTCTTTACTACCTCCGTAACTTAATG 58.754 37.037 0.00 0.00 0.00 1.90
1756 1773 8.246871 ACTACCTCCGTAACTTAATGTAAGAAC 58.753 37.037 2.11 0.21 39.09 3.01
1855 1936 1.790043 CAGTTGCATCAACACGTACGA 59.210 47.619 24.41 0.00 45.66 3.43
2047 3110 0.409876 ACTGAGGAGGTGCTAGGTGA 59.590 55.000 0.00 0.00 0.00 4.02
2068 3803 4.272748 TGATGTCTTGTAGTATCTCGTCCG 59.727 45.833 0.00 0.00 0.00 4.79
2085 3820 0.460284 CCGTGTCTATCCCACTGCAC 60.460 60.000 0.00 0.00 0.00 4.57
2515 5397 0.613292 ACTCACTGATGGAGCGAGGT 60.613 55.000 0.00 0.00 35.79 3.85
2554 5436 1.484356 GAATGCTACGCCGTATTCGT 58.516 50.000 0.00 0.00 43.20 3.85
2570 5455 2.261671 GTGGCACCGACGACATCT 59.738 61.111 6.29 0.00 0.00 2.90
2573 5458 3.188786 GCACCGACGACATCTGCC 61.189 66.667 0.00 0.00 0.00 4.85
2575 5460 1.374125 CACCGACGACATCTGCCAA 60.374 57.895 0.00 0.00 0.00 4.52
2629 5514 2.162408 GTCAAAGCTAGTGCAACATCCC 59.838 50.000 0.00 0.00 41.43 3.85
2692 5577 2.044946 GCCGTGCTCATCCCCTTT 60.045 61.111 0.00 0.00 0.00 3.11
2698 5583 2.247358 GTGCTCATCCCCTTTTTCCAA 58.753 47.619 0.00 0.00 0.00 3.53
2701 5586 2.632512 GCTCATCCCCTTTTTCCAACAA 59.367 45.455 0.00 0.00 0.00 2.83
2752 5637 1.021202 CACCCGTGCTTTTTGAGACA 58.979 50.000 0.00 0.00 0.00 3.41
3067 5952 2.786495 GCCGAGCGAGATCTTCCCA 61.786 63.158 0.00 0.00 0.00 4.37
3085 5970 2.835431 CTGGAGATCCGGTCGGCT 60.835 66.667 0.00 0.00 39.43 5.52
3088 5973 4.593864 GAGATCCGGTCGGCTGCC 62.594 72.222 9.11 9.11 34.68 4.85
3106 5991 2.854963 GCCCAGAGCATCAATGTATCA 58.145 47.619 0.00 0.00 42.97 2.15
3127 6012 3.567164 CAGTGAACATGCTCTTCACCTTT 59.433 43.478 18.85 3.97 45.92 3.11
3253 6138 1.180456 TGCCGGAGACCAAGAACGTA 61.180 55.000 5.05 0.00 0.00 3.57
3504 8715 1.396648 TGTGCGGCTGTAAATTCGATG 59.603 47.619 0.00 0.00 0.00 3.84
3505 8716 1.013596 TGCGGCTGTAAATTCGATGG 58.986 50.000 0.00 0.00 0.00 3.51
3620 8882 2.570302 TCTTAGGCGCCTAACCTTTCTT 59.430 45.455 38.79 13.61 38.81 2.52
3626 8888 3.253921 GGCGCCTAACCTTTCTTAAAACA 59.746 43.478 22.15 0.00 0.00 2.83
3739 9001 6.440328 AGCCAACCATGTTTGTAAAGGATATT 59.560 34.615 2.07 0.00 0.00 1.28
3808 9070 1.072505 AAAAAGGCTCTTCCCGCGA 59.927 52.632 8.23 0.00 34.51 5.87
3814 9076 4.796231 CTCTTCCCGCGACACCCG 62.796 72.222 8.23 0.00 42.21 5.28
3957 9219 2.501610 CGGCTTCCCTCCTGTAGC 59.498 66.667 0.00 0.00 0.00 3.58
3958 9220 2.060980 CGGCTTCCCTCCTGTAGCT 61.061 63.158 0.00 0.00 34.16 3.32
3959 9221 0.755698 CGGCTTCCCTCCTGTAGCTA 60.756 60.000 0.00 0.00 34.16 3.32
3960 9222 1.044611 GGCTTCCCTCCTGTAGCTAG 58.955 60.000 0.00 0.00 34.16 3.42
3961 9223 1.044611 GCTTCCCTCCTGTAGCTAGG 58.955 60.000 0.00 0.00 39.29 3.02
3962 9224 1.411787 GCTTCCCTCCTGTAGCTAGGA 60.412 57.143 5.12 5.12 44.44 2.94
4086 9348 0.620990 TGGCCATTTGGGGATGCATT 60.621 50.000 0.00 0.00 37.04 3.56
4099 9361 0.638292 ATGCATTGGGGGAGGATGTT 59.362 50.000 0.00 0.00 0.00 2.71
4112 9374 0.177141 GGATGTTAGGCGTGGCACTA 59.823 55.000 16.72 0.00 0.00 2.74
4263 9525 6.655425 TCACTCGATATCTAGATCGGAATTGT 59.345 38.462 8.95 1.97 46.93 2.71
4274 9536 1.747745 GGAATTGTTCCGGTCGGGG 60.748 63.158 9.68 0.00 40.59 5.73
4276 9538 2.473891 GAATTGTTCCGGTCGGGGGT 62.474 60.000 9.68 0.00 36.01 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.223157 GACAATTTTACTGTTCACGCGG 58.777 45.455 12.47 0.00 0.00 6.46
340 344 6.183359 CCAAATTCATCGTTCGTGAACATTTC 60.183 38.462 12.76 0.00 41.20 2.17
743 748 3.006859 CAGTAAGTGTGTCATCCAGGTCA 59.993 47.826 0.00 0.00 0.00 4.02
804 809 2.038863 TCAGGGGTGTCACATAGGTT 57.961 50.000 5.12 0.00 0.00 3.50
868 873 5.994054 GCTCAATCTGCTTATATCAAGGACA 59.006 40.000 0.00 0.00 0.00 4.02
899 904 2.765807 ATGCCACGGAGGAGAGGG 60.766 66.667 0.00 0.00 41.22 4.30
909 914 1.167781 TATGATGCCAGCATGCCACG 61.168 55.000 15.66 2.92 36.70 4.94
936 942 7.039644 GGATACTTGCTAGCTCACTATTAAGGA 60.040 40.741 17.23 5.41 30.91 3.36
961 967 1.996798 TGGTAGGATCGAAGCTAGGG 58.003 55.000 0.00 0.00 0.00 3.53
963 969 2.036089 GGGTTGGTAGGATCGAAGCTAG 59.964 54.545 0.00 0.00 0.00 3.42
964 970 2.037144 GGGTTGGTAGGATCGAAGCTA 58.963 52.381 0.00 0.00 0.00 3.32
965 971 0.831307 GGGTTGGTAGGATCGAAGCT 59.169 55.000 0.00 0.00 0.00 3.74
966 972 0.831307 AGGGTTGGTAGGATCGAAGC 59.169 55.000 0.00 0.00 0.00 3.86
967 973 2.036089 GCTAGGGTTGGTAGGATCGAAG 59.964 54.545 0.00 0.00 0.00 3.79
968 974 2.037144 GCTAGGGTTGGTAGGATCGAA 58.963 52.381 0.00 0.00 0.00 3.71
971 977 2.036089 CGAAGCTAGGGTTGGTAGGATC 59.964 54.545 0.00 0.00 0.00 3.36
981 987 1.568504 TGGTTGATCGAAGCTAGGGT 58.431 50.000 0.00 0.00 32.90 4.34
1026 1032 0.252197 GGTATGACTTTCCACCGGCT 59.748 55.000 0.00 0.00 0.00 5.52
1039 1045 0.253044 GTGAGCTTGCCAGGGTATGA 59.747 55.000 0.00 0.00 0.00 2.15
1092 1098 3.268103 AAAGATGAGGCCGCCGGTT 62.268 57.895 4.45 0.00 0.00 4.44
1110 1116 2.173143 TGAGATGCCAATGTCATAGCCA 59.827 45.455 5.54 0.00 31.46 4.75
1113 1119 2.812591 GCCTGAGATGCCAATGTCATAG 59.187 50.000 0.00 0.00 35.67 2.23
1155 1161 4.068599 CTGGGAAGAACTTCAAGAGGAAC 58.931 47.826 15.02 0.00 41.20 3.62
1619 1635 2.867429 CGGCATTTTGATGTGACCTTC 58.133 47.619 0.00 0.00 0.00 3.46
1646 1662 7.308589 GCTTCAACTTGGGCGATATATATTTGT 60.309 37.037 0.00 0.00 0.00 2.83
1729 1746 9.461312 TTCTTACATTAAGTTACGGAGGTAGTA 57.539 33.333 0.00 0.00 37.10 1.82
1770 1787 6.737254 ATAAGGTGTTTTTGGACACTATCG 57.263 37.500 7.92 0.00 47.00 2.92
1855 1936 2.859165 TCTCTTCCCATTTCTGCGTT 57.141 45.000 0.00 0.00 0.00 4.84
1923 2983 2.177811 TCCCCGTTGGTCCATGTATA 57.822 50.000 0.00 0.00 34.77 1.47
1926 2988 1.131303 TCTTCCCCGTTGGTCCATGT 61.131 55.000 0.00 0.00 34.77 3.21
2047 3110 4.035324 CACGGACGAGATACTACAAGACAT 59.965 45.833 0.00 0.00 0.00 3.06
2068 3803 2.761208 AGTAGTGCAGTGGGATAGACAC 59.239 50.000 3.69 0.00 39.10 3.67
2138 4733 7.950512 TGTTTTTGACTACATTCACCATCAAT 58.049 30.769 0.00 0.00 0.00 2.57
2139 4734 7.340122 TGTTTTTGACTACATTCACCATCAA 57.660 32.000 0.00 0.00 0.00 2.57
2140 4735 6.951062 TGTTTTTGACTACATTCACCATCA 57.049 33.333 0.00 0.00 0.00 3.07
2141 4736 7.029563 GGATGTTTTTGACTACATTCACCATC 58.970 38.462 0.00 0.00 35.24 3.51
2142 4737 6.493115 TGGATGTTTTTGACTACATTCACCAT 59.507 34.615 0.00 0.00 35.78 3.55
2143 4738 5.830457 TGGATGTTTTTGACTACATTCACCA 59.170 36.000 0.00 0.00 35.78 4.17
2144 4739 6.325919 TGGATGTTTTTGACTACATTCACC 57.674 37.500 0.00 0.00 35.78 4.02
2146 4741 9.295825 ACTATTGGATGTTTTTGACTACATTCA 57.704 29.630 0.00 0.00 38.24 2.57
2150 4745 9.733556 ACATACTATTGGATGTTTTTGACTACA 57.266 29.630 0.00 0.00 32.27 2.74
2151 4746 9.988350 CACATACTATTGGATGTTTTTGACTAC 57.012 33.333 1.87 0.00 34.01 2.73
2161 4761 2.872245 GCGTGCACATACTATTGGATGT 59.128 45.455 18.64 0.00 36.73 3.06
2222 5097 9.944663 TCAATCAATTGTACTTTTACACACTTC 57.055 29.630 5.13 0.00 37.97 3.01
2245 5120 5.809719 TGCATGCGTATCAAAGTAATCAA 57.190 34.783 14.09 0.00 0.00 2.57
2275 5152 1.632046 CCGACATGTACAACGGCACC 61.632 60.000 20.36 0.00 38.98 5.01
2344 5221 0.466189 GGATGCCGGTGGTGATCATT 60.466 55.000 1.90 0.00 0.00 2.57
2554 5436 2.261361 CAGATGTCGTCGGTGCCA 59.739 61.111 0.00 0.00 0.00 4.92
2570 5455 2.260434 GTCCGCGTACTCTTGGCA 59.740 61.111 4.92 0.00 0.00 4.92
2573 5458 1.153823 CCAGGTCCGCGTACTCTTG 60.154 63.158 4.92 0.00 0.00 3.02
2575 5460 2.035312 ACCAGGTCCGCGTACTCT 59.965 61.111 4.92 0.00 0.00 3.24
2629 5514 1.725665 CATCAGGATGTTGCGCCAG 59.274 57.895 4.18 0.00 37.40 4.85
2692 5577 2.727123 TGCCAGAGAGTTGTTGGAAA 57.273 45.000 0.00 0.00 33.76 3.13
2698 5583 1.070758 ACGTTGATGCCAGAGAGTTGT 59.929 47.619 0.00 0.00 0.00 3.32
2701 5586 0.969149 TGACGTTGATGCCAGAGAGT 59.031 50.000 0.00 0.00 0.00 3.24
2752 5637 1.879372 GCGTCCCCTTTAAAACCGAGT 60.879 52.381 0.00 0.00 0.00 4.18
3046 5931 1.139734 GAAGATCTCGCTCGGCACA 59.860 57.895 0.00 0.00 0.00 4.57
3067 5952 3.148279 GCCGACCGGATCTCCAGT 61.148 66.667 9.46 0.00 37.50 4.00
3088 5973 4.700700 TCACTGATACATTGATGCTCTGG 58.299 43.478 0.00 0.00 0.00 3.86
3127 6012 4.393155 AAGGCCTGCGCGATGACA 62.393 61.111 12.10 0.00 35.02 3.58
3483 8680 1.732941 TCGAATTTACAGCCGCACAT 58.267 45.000 0.00 0.00 0.00 3.21
3504 8715 9.668497 AGTGTAAAGAGAAACAGGAATTATACC 57.332 33.333 0.00 0.00 0.00 2.73
3620 8882 7.604927 ACACGCCTTAGATGTTTAGATGTTTTA 59.395 33.333 0.00 0.00 0.00 1.52
3626 8888 5.753921 GCTAACACGCCTTAGATGTTTAGAT 59.246 40.000 4.30 0.00 37.68 1.98
3710 8972 6.948886 TCCTTTACAAACATGGTTGGCTAATA 59.051 34.615 26.56 7.50 32.50 0.98
3739 9001 6.327365 TGGTTATGATGAGCTCTTCTTCCATA 59.673 38.462 25.08 14.79 0.00 2.74
3751 9013 3.369147 CCGATCGATTGGTTATGATGAGC 59.631 47.826 21.95 0.00 0.00 4.26
3837 9099 1.174712 GCTGGTGTGTGGATTGCTGT 61.175 55.000 0.00 0.00 0.00 4.40
3889 9151 4.785453 GCGAGGGCTTCACCAGGG 62.785 72.222 0.00 0.00 42.05 4.45
3957 9219 0.539051 CTCCCAACCTGCTGTCCTAG 59.461 60.000 0.00 0.00 0.00 3.02
3958 9220 0.116342 TCTCCCAACCTGCTGTCCTA 59.884 55.000 0.00 0.00 0.00 2.94
3959 9221 0.548682 ATCTCCCAACCTGCTGTCCT 60.549 55.000 0.00 0.00 0.00 3.85
3960 9222 0.393537 CATCTCCCAACCTGCTGTCC 60.394 60.000 0.00 0.00 0.00 4.02
3961 9223 1.028868 GCATCTCCCAACCTGCTGTC 61.029 60.000 0.00 0.00 0.00 3.51
3962 9224 1.001641 GCATCTCCCAACCTGCTGT 60.002 57.895 0.00 0.00 0.00 4.40
3999 9261 3.849951 CGGTCACCGGGATCCTGG 61.850 72.222 34.54 34.54 44.15 4.45
4024 9286 1.448540 CCATGTGAGGACGTGAGGC 60.449 63.158 0.00 0.00 41.05 4.70
4062 9324 0.252012 ATCCCCAAATGGCCACGAAA 60.252 50.000 8.16 0.00 0.00 3.46
4063 9325 0.969917 CATCCCCAAATGGCCACGAA 60.970 55.000 8.16 0.00 0.00 3.85
4086 9348 2.070039 CGCCTAACATCCTCCCCCA 61.070 63.158 0.00 0.00 0.00 4.96
4099 9361 2.284039 TGGGTAGTGCCACGCCTA 60.284 61.111 10.44 3.04 39.65 3.93
4112 9374 3.550431 CGATGGCCGGATCTGGGT 61.550 66.667 22.38 0.00 33.91 4.51
4276 9538 0.911045 TCTGGCTGAAGATGAGGGCA 60.911 55.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.