Multiple sequence alignment - TraesCS3B01G518000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G518000 chr3B 100.000 4927 0 0 1 4927 761001991 761006917 0.000000e+00 9099.0
1 TraesCS3B01G518000 chr3B 96.877 1601 47 2 3328 4927 761061921 761063519 0.000000e+00 2676.0
2 TraesCS3B01G518000 chr3B 93.948 1008 53 4 2718 3720 761195160 761196164 0.000000e+00 1517.0
3 TraesCS3B01G518000 chr3B 85.814 1149 136 17 2701 3834 761370049 761371185 0.000000e+00 1194.0
4 TraesCS3B01G518000 chr3B 85.139 1117 134 21 1605 2697 760492535 760491427 0.000000e+00 1114.0
5 TraesCS3B01G518000 chr3B 85.462 1018 123 9 2708 3715 761394164 761395166 0.000000e+00 1037.0
6 TraesCS3B01G518000 chr3B 82.326 1109 143 21 1612 2694 761368897 761369978 0.000000e+00 913.0
7 TraesCS3B01G518000 chr3B 92.070 517 38 3 4064 4578 761035221 761035736 0.000000e+00 725.0
8 TraesCS3B01G518000 chr3B 89.555 517 51 3 4064 4578 761104074 761104589 0.000000e+00 652.0
9 TraesCS3B01G518000 chr3B 88.975 517 54 3 4064 4578 761134264 761134779 1.930000e-178 636.0
10 TraesCS3B01G518000 chr3B 84.301 637 54 15 1140 1760 822265062 822265668 9.190000e-162 580.0
11 TraesCS3B01G518000 chr3B 84.144 637 55 15 1140 1760 822366626 822367232 4.280000e-160 575.0
12 TraesCS3B01G518000 chr3B 86.166 253 26 5 4674 4925 761104861 761105105 1.050000e-66 265.0
13 TraesCS3B01G518000 chr3B 81.571 331 47 7 4595 4922 761270014 761270333 1.360000e-65 261.0
14 TraesCS3B01G518000 chr3B 85.771 253 27 5 4674 4925 761135050 761135294 4.890000e-65 259.0
15 TraesCS3B01G518000 chr3B 80.631 222 32 6 974 1190 761025946 761026161 1.420000e-35 161.0
16 TraesCS3B01G518000 chr3B 82.946 129 15 6 186 309 73302758 73302884 5.210000e-20 110.0
17 TraesCS3B01G518000 chr3B 79.167 144 17 10 995 1136 761392512 761392644 2.440000e-13 87.9
18 TraesCS3B01G518000 chr3A 89.359 3590 249 58 1142 4668 705948099 705951618 0.000000e+00 4390.0
19 TraesCS3B01G518000 chr3A 86.376 1145 131 14 2701 3834 706335677 706336807 0.000000e+00 1227.0
20 TraesCS3B01G518000 chr3A 86.026 1145 131 15 2701 3834 706018414 706019540 0.000000e+00 1201.0
21 TraesCS3B01G518000 chr3A 85.276 1141 124 18 1583 2697 705370036 705368914 0.000000e+00 1136.0
22 TraesCS3B01G518000 chr3A 82.410 1336 170 32 2701 4002 705310317 705309013 0.000000e+00 1105.0
23 TraesCS3B01G518000 chr3A 84.510 1020 131 11 2708 3715 706258820 706259824 0.000000e+00 983.0
24 TraesCS3B01G518000 chr3A 82.659 1113 139 27 1612 2694 706334518 706335606 0.000000e+00 937.0
25 TraesCS3B01G518000 chr3A 80.759 1107 149 33 1612 2694 706017277 706018343 0.000000e+00 806.0
26 TraesCS3B01G518000 chr3A 86.471 340 40 3 2084 2422 706258198 706258532 7.790000e-98 368.0
27 TraesCS3B01G518000 chr3A 75.208 601 120 16 3341 3935 705877406 705877983 1.760000e-64 257.0
28 TraesCS3B01G518000 chr3A 89.474 171 16 1 2747 2917 705368680 705368512 1.070000e-51 215.0
29 TraesCS3B01G518000 chr3A 76.667 240 29 11 1142 1366 705370457 705370230 1.880000e-19 108.0
30 TraesCS3B01G518000 chr3A 78.713 202 10 16 1066 1264 706016741 706016912 2.430000e-18 104.0
31 TraesCS3B01G518000 chr3A 76.974 152 26 6 596 743 63830892 63831038 1.470000e-10 78.7
32 TraesCS3B01G518000 chr3A 94.118 51 3 0 2699 2749 705368847 705368797 1.470000e-10 78.7
33 TraesCS3B01G518000 chr3D 90.114 1669 108 25 1605 3235 572555431 572553782 0.000000e+00 2115.0
34 TraesCS3B01G518000 chr3D 86.922 1147 126 15 2701 3834 572508748 572507613 0.000000e+00 1266.0
35 TraesCS3B01G518000 chr3D 83.529 1275 142 35 2708 3966 572488432 572487210 0.000000e+00 1129.0
36 TraesCS3B01G518000 chr3D 82.650 1049 138 28 1681 2697 572509852 572508816 0.000000e+00 889.0
37 TraesCS3B01G518000 chr3D 84.187 664 70 20 917 1564 572556077 572555433 3.260000e-171 612.0
38 TraesCS3B01G518000 chr3D 87.647 340 34 3 4587 4925 572553387 572553055 5.980000e-104 388.0
39 TraesCS3B01G518000 chr3D 78.261 368 61 14 3 357 115204803 115204442 8.300000e-53 219.0
40 TraesCS3B01G518000 chr3D 80.198 202 17 11 1066 1264 572490097 572489916 4.000000e-26 130.0
41 TraesCS3B01G518000 chr3D 78.607 201 12 13 1066 1264 572510436 572510265 2.430000e-18 104.0
42 TraesCS3B01G518000 chrUn 86.748 1147 107 27 1581 2695 131949550 131950683 0.000000e+00 1234.0
43 TraesCS3B01G518000 chrUn 82.396 1369 183 32 2701 4031 132058669 132060017 0.000000e+00 1140.0
44 TraesCS3B01G518000 chrUn 74.889 450 55 28 967 1386 131948961 131949382 8.540000e-33 152.0
45 TraesCS3B01G518000 chrUn 96.078 51 2 0 2699 2749 131950753 131950803 3.160000e-12 84.2
46 TraesCS3B01G518000 chr5B 88.075 956 66 16 1141 2080 696806687 696805764 0.000000e+00 1090.0
47 TraesCS3B01G518000 chr5B 95.522 201 8 1 1736 1936 4575314 4575513 2.210000e-83 320.0
48 TraesCS3B01G518000 chr5B 87.251 251 24 5 1140 1387 151001769 151001524 3.760000e-71 279.0
49 TraesCS3B01G518000 chr5B 75.872 344 65 13 191 517 393833029 393833371 5.100000e-35 159.0
50 TraesCS3B01G518000 chr5B 81.513 119 13 7 376 487 267057446 267057562 6.790000e-14 89.8
51 TraesCS3B01G518000 chr4B 87.774 957 70 15 1140 2080 605377606 605378531 0.000000e+00 1075.0
52 TraesCS3B01G518000 chr4B 84.013 638 58 13 1142 1764 97314763 97315371 1.540000e-159 573.0
53 TraesCS3B01G518000 chr4B 83.881 639 57 21 1142 1764 38471734 38471126 7.160000e-158 568.0
54 TraesCS3B01G518000 chr4B 77.358 583 98 20 1612 2182 566641596 566641036 1.030000e-81 315.0
55 TraesCS3B01G518000 chr4B 78.008 532 84 19 1612 2132 635260354 635259845 2.230000e-78 303.0
56 TraesCS3B01G518000 chr4B 77.674 533 84 21 1612 2132 649511012 649511521 4.820000e-75 292.0
57 TraesCS3B01G518000 chr4B 81.333 225 38 4 184 406 660929114 660929336 3.920000e-41 180.0
58 TraesCS3B01G518000 chr4B 80.973 226 38 5 184 406 660903814 660904037 1.820000e-39 174.0
59 TraesCS3B01G518000 chr4B 84.028 144 20 3 270 411 554187579 554187721 8.600000e-28 135.0
60 TraesCS3B01G518000 chr6B 87.356 957 75 14 1140 2080 45065126 45064200 0.000000e+00 1055.0
61 TraesCS3B01G518000 chr6B 87.147 957 77 14 1140 2080 45017387 45016461 0.000000e+00 1044.0
62 TraesCS3B01G518000 chr6B 90.714 420 27 9 1736 2153 663487780 663488189 2.590000e-152 549.0
63 TraesCS3B01G518000 chr6B 81.690 142 21 3 181 321 704800544 704800681 4.030000e-21 113.0
64 TraesCS3B01G518000 chr6B 75.969 129 21 8 623 747 36788744 36788622 1.920000e-04 58.4
65 TraesCS3B01G518000 chr2B 83.805 636 58 18 1140 1760 147233851 147234456 3.330000e-156 562.0
66 TraesCS3B01G518000 chr4A 90.499 421 27 9 1736 2153 22639837 22640247 1.210000e-150 544.0
67 TraesCS3B01G518000 chr4A 90.361 415 28 9 1736 2148 623982170 623981766 7.260000e-148 534.0
68 TraesCS3B01G518000 chr4A 74.830 588 100 25 184 747 498270542 498271105 6.420000e-54 222.0
69 TraesCS3B01G518000 chr4A 80.992 242 41 5 3 243 219192774 219192537 2.340000e-43 187.0
70 TraesCS3B01G518000 chr1B 95.050 202 8 2 1736 1936 10896742 10896942 2.860000e-82 316.0
71 TraesCS3B01G518000 chr7B 77.256 532 88 19 1612 2132 225876400 225876909 1.040000e-71 281.0
72 TraesCS3B01G518000 chr7B 77.068 532 89 19 1612 2132 96390978 96391487 4.860000e-70 276.0
73 TraesCS3B01G518000 chr5A 76.232 568 94 28 3 541 403866254 403865699 3.780000e-66 263.0
74 TraesCS3B01G518000 chr5A 77.617 277 47 12 270 542 398293751 398293486 2.380000e-33 154.0
75 TraesCS3B01G518000 chr5A 78.010 191 29 10 332 515 556439719 556439903 1.880000e-19 108.0
76 TraesCS3B01G518000 chr5A 78.065 155 25 8 594 747 582634018 582633872 6.790000e-14 89.8
77 TraesCS3B01G518000 chr2A 81.306 337 42 10 4 324 617056554 617056885 2.280000e-63 254.0
78 TraesCS3B01G518000 chr2A 91.176 136 11 1 3 137 706223765 706223900 3.030000e-42 183.0
79 TraesCS3B01G518000 chr2A 76.471 306 46 15 196 494 377137345 377137631 5.140000e-30 143.0
80 TraesCS3B01G518000 chr2A 83.088 136 21 2 275 408 623104036 623104171 6.700000e-24 122.0
81 TraesCS3B01G518000 chr5D 76.526 426 55 14 3 406 345078218 345077816 1.810000e-44 191.0
82 TraesCS3B01G518000 chr5D 91.241 137 11 1 3 138 379388950 379388814 8.420000e-43 185.0
83 TraesCS3B01G518000 chr5D 77.273 330 57 15 3 321 28663805 28663483 1.410000e-40 178.0
84 TraesCS3B01G518000 chr5D 80.169 237 35 8 3 237 238389533 238389307 3.050000e-37 167.0
85 TraesCS3B01G518000 chr5D 78.740 254 36 12 271 521 440342626 440342864 2.380000e-33 154.0
86 TraesCS3B01G518000 chr7D 82.096 229 34 6 11 236 37112362 37112586 6.510000e-44 189.0
87 TraesCS3B01G518000 chr7D 84.024 169 19 7 582 747 174833925 174834088 6.600000e-34 156.0
88 TraesCS3B01G518000 chr7D 81.548 168 19 9 582 745 217448010 217447851 1.440000e-25 128.0
89 TraesCS3B01G518000 chr7D 75.986 279 38 15 174 424 165637511 165637234 3.120000e-22 117.0
90 TraesCS3B01G518000 chr6D 75.976 333 40 23 191 496 144096671 144096352 8.600000e-28 135.0
91 TraesCS3B01G518000 chr6D 75.897 195 26 14 555 747 22157909 22157734 4.090000e-11 80.5
92 TraesCS3B01G518000 chr1D 79.781 183 24 11 572 747 326772577 326772401 2.410000e-23 121.0
93 TraesCS3B01G518000 chr1D 86.000 100 6 6 398 490 338066020 338065922 3.140000e-17 100.0
94 TraesCS3B01G518000 chr1D 81.452 124 15 6 629 747 214253804 214253684 1.460000e-15 95.3
95 TraesCS3B01G518000 chr1A 77.515 169 25 10 582 747 583900026 583900184 6.790000e-14 89.8
96 TraesCS3B01G518000 chr2D 81.395 86 8 7 654 738 555225057 555224979 4.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G518000 chr3B 761001991 761006917 4926 False 9099.000000 9099 100.000000 1 4927 1 chr3B.!!$F2 4926
1 TraesCS3B01G518000 chr3B 761061921 761063519 1598 False 2676.000000 2676 96.877000 3328 4927 1 chr3B.!!$F5 1599
2 TraesCS3B01G518000 chr3B 761195160 761196164 1004 False 1517.000000 1517 93.948000 2718 3720 1 chr3B.!!$F6 1002
3 TraesCS3B01G518000 chr3B 760491427 760492535 1108 True 1114.000000 1114 85.139000 1605 2697 1 chr3B.!!$R1 1092
4 TraesCS3B01G518000 chr3B 761368897 761371185 2288 False 1053.500000 1194 84.070000 1612 3834 2 chr3B.!!$F12 2222
5 TraesCS3B01G518000 chr3B 761035221 761035736 515 False 725.000000 725 92.070000 4064 4578 1 chr3B.!!$F4 514
6 TraesCS3B01G518000 chr3B 822265062 822265668 606 False 580.000000 580 84.301000 1140 1760 1 chr3B.!!$F8 620
7 TraesCS3B01G518000 chr3B 822366626 822367232 606 False 575.000000 575 84.144000 1140 1760 1 chr3B.!!$F9 620
8 TraesCS3B01G518000 chr3B 761392512 761395166 2654 False 562.450000 1037 82.314500 995 3715 2 chr3B.!!$F13 2720
9 TraesCS3B01G518000 chr3B 761104074 761105105 1031 False 458.500000 652 87.860500 4064 4925 2 chr3B.!!$F10 861
10 TraesCS3B01G518000 chr3B 761134264 761135294 1030 False 447.500000 636 87.373000 4064 4925 2 chr3B.!!$F11 861
11 TraesCS3B01G518000 chr3A 705948099 705951618 3519 False 4390.000000 4390 89.359000 1142 4668 1 chr3A.!!$F3 3526
12 TraesCS3B01G518000 chr3A 705309013 705310317 1304 True 1105.000000 1105 82.410000 2701 4002 1 chr3A.!!$R1 1301
13 TraesCS3B01G518000 chr3A 706334518 706336807 2289 False 1082.000000 1227 84.517500 1612 3834 2 chr3A.!!$F6 2222
14 TraesCS3B01G518000 chr3A 706016741 706019540 2799 False 703.666667 1201 81.832667 1066 3834 3 chr3A.!!$F4 2768
15 TraesCS3B01G518000 chr3A 706258198 706259824 1626 False 675.500000 983 85.490500 2084 3715 2 chr3A.!!$F5 1631
16 TraesCS3B01G518000 chr3A 705368512 705370457 1945 True 384.425000 1136 86.383750 1142 2917 4 chr3A.!!$R2 1775
17 TraesCS3B01G518000 chr3A 705877406 705877983 577 False 257.000000 257 75.208000 3341 3935 1 chr3A.!!$F2 594
18 TraesCS3B01G518000 chr3D 572553055 572556077 3022 True 1038.333333 2115 87.316000 917 4925 3 chr3D.!!$R4 4008
19 TraesCS3B01G518000 chr3D 572507613 572510436 2823 True 753.000000 1266 82.726333 1066 3834 3 chr3D.!!$R3 2768
20 TraesCS3B01G518000 chr3D 572487210 572490097 2887 True 629.500000 1129 81.863500 1066 3966 2 chr3D.!!$R2 2900
21 TraesCS3B01G518000 chrUn 132058669 132060017 1348 False 1140.000000 1140 82.396000 2701 4031 1 chrUn.!!$F1 1330
22 TraesCS3B01G518000 chrUn 131948961 131950803 1842 False 490.066667 1234 85.905000 967 2749 3 chrUn.!!$F2 1782
23 TraesCS3B01G518000 chr5B 696805764 696806687 923 True 1090.000000 1090 88.075000 1141 2080 1 chr5B.!!$R2 939
24 TraesCS3B01G518000 chr4B 605377606 605378531 925 False 1075.000000 1075 87.774000 1140 2080 1 chr4B.!!$F3 940
25 TraesCS3B01G518000 chr4B 97314763 97315371 608 False 573.000000 573 84.013000 1142 1764 1 chr4B.!!$F1 622
26 TraesCS3B01G518000 chr4B 38471126 38471734 608 True 568.000000 568 83.881000 1142 1764 1 chr4B.!!$R1 622
27 TraesCS3B01G518000 chr4B 566641036 566641596 560 True 315.000000 315 77.358000 1612 2182 1 chr4B.!!$R2 570
28 TraesCS3B01G518000 chr4B 635259845 635260354 509 True 303.000000 303 78.008000 1612 2132 1 chr4B.!!$R3 520
29 TraesCS3B01G518000 chr4B 649511012 649511521 509 False 292.000000 292 77.674000 1612 2132 1 chr4B.!!$F4 520
30 TraesCS3B01G518000 chr6B 45064200 45065126 926 True 1055.000000 1055 87.356000 1140 2080 1 chr6B.!!$R3 940
31 TraesCS3B01G518000 chr6B 45016461 45017387 926 True 1044.000000 1044 87.147000 1140 2080 1 chr6B.!!$R2 940
32 TraesCS3B01G518000 chr2B 147233851 147234456 605 False 562.000000 562 83.805000 1140 1760 1 chr2B.!!$F1 620
33 TraesCS3B01G518000 chr4A 498270542 498271105 563 False 222.000000 222 74.830000 184 747 1 chr4A.!!$F2 563
34 TraesCS3B01G518000 chr7B 225876400 225876909 509 False 281.000000 281 77.256000 1612 2132 1 chr7B.!!$F2 520
35 TraesCS3B01G518000 chr7B 96390978 96391487 509 False 276.000000 276 77.068000 1612 2132 1 chr7B.!!$F1 520
36 TraesCS3B01G518000 chr5A 403865699 403866254 555 True 263.000000 263 76.232000 3 541 1 chr5A.!!$R2 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 947 0.037160 AACCGGTTGGACCCATGTAC 59.963 55.000 21.56 0.0 39.21 2.90 F
1519 1734 0.040514 TTGTGCGGAATTCGTGCTTG 60.041 50.000 18.48 0.0 41.72 4.01 F
1522 1737 1.210155 GCGGAATTCGTGCTTGCTT 59.790 52.632 12.56 0.0 41.72 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 3095 0.685097 GGTGCCACCTCAGTACAGAA 59.315 55.000 6.63 0.0 34.73 3.02 R
3133 3754 1.571460 CCAGAAAGCACAGACGCAC 59.429 57.895 0.00 0.0 0.00 5.34 R
4005 4662 6.054941 TCTCAAAATCTCACAGTTGCTGTAA 58.945 36.000 1.16 0.0 43.43 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.605232 ACCGTTTTCACCGTTGGATTC 59.395 47.619 0.00 0.00 0.00 2.52
68 69 2.882137 GTTTTCACCGTTGGATTCCTCA 59.118 45.455 3.95 0.00 0.00 3.86
70 71 1.052617 TCACCGTTGGATTCCTCACA 58.947 50.000 3.95 0.00 0.00 3.58
71 72 1.418264 TCACCGTTGGATTCCTCACAA 59.582 47.619 3.95 0.00 0.00 3.33
91 92 7.207383 TCACAACGAGATCTTCAAAACTAGAA 58.793 34.615 0.00 0.00 0.00 2.10
92 93 7.709182 TCACAACGAGATCTTCAAAACTAGAAA 59.291 33.333 0.00 0.00 0.00 2.52
93 94 8.335356 CACAACGAGATCTTCAAAACTAGAAAA 58.665 33.333 0.00 0.00 0.00 2.29
94 95 8.889717 ACAACGAGATCTTCAAAACTAGAAAAA 58.110 29.630 0.00 0.00 0.00 1.94
116 117 4.823790 ATGTTGGTAGGTTTTGACGAAC 57.176 40.909 0.00 0.00 35.54 3.95
117 118 3.876341 TGTTGGTAGGTTTTGACGAACT 58.124 40.909 0.00 0.00 35.87 3.01
149 151 2.871096 TAAACCGAAATGGGAGCACT 57.129 45.000 0.00 0.00 44.64 4.40
150 152 1.995376 AAACCGAAATGGGAGCACTT 58.005 45.000 0.00 0.00 44.64 3.16
152 154 2.871096 ACCGAAATGGGAGCACTTTA 57.129 45.000 0.00 0.00 44.64 1.85
157 159 5.011635 ACCGAAATGGGAGCACTTTATTTTT 59.988 36.000 0.00 0.00 44.64 1.94
159 161 6.389906 CGAAATGGGAGCACTTTATTTTTCT 58.610 36.000 0.00 0.00 0.00 2.52
162 164 8.607441 AAATGGGAGCACTTTATTTTTCTTTC 57.393 30.769 0.00 0.00 0.00 2.62
170 172 7.223971 AGCACTTTATTTTTCTTTCCCGAAAAC 59.776 33.333 0.00 0.00 41.19 2.43
171 173 7.517734 GCACTTTATTTTTCTTTCCCGAAAACC 60.518 37.037 0.00 0.00 41.19 3.27
173 175 4.659111 ATTTTTCTTTCCCGAAAACCGT 57.341 36.364 0.00 0.00 41.19 4.83
174 176 4.453177 TTTTTCTTTCCCGAAAACCGTT 57.547 36.364 0.00 0.00 41.19 4.44
175 177 4.453177 TTTTCTTTCCCGAAAACCGTTT 57.547 36.364 0.00 0.00 37.81 3.60
176 178 3.696281 TTCTTTCCCGAAAACCGTTTC 57.304 42.857 0.00 0.00 39.90 2.78
177 179 1.948834 TCTTTCCCGAAAACCGTTTCC 59.051 47.619 0.00 0.00 40.13 3.13
178 180 0.662085 TTTCCCGAAAACCGTTTCCG 59.338 50.000 0.00 0.00 40.13 4.30
179 181 0.179062 TTCCCGAAAACCGTTTCCGA 60.179 50.000 3.98 0.00 40.13 4.55
181 183 0.600782 CCCGAAAACCGTTTCCGAGA 60.601 55.000 3.98 0.00 40.13 4.04
182 184 1.435577 CCGAAAACCGTTTCCGAGAT 58.564 50.000 3.98 0.00 40.13 2.75
187 201 1.289109 AACCGTTTCCGAGATGCACG 61.289 55.000 0.00 0.00 35.63 5.34
224 242 4.540824 GAAAGCAAAACCATGTCTCTCAC 58.459 43.478 0.00 0.00 0.00 3.51
229 247 2.751166 AACCATGTCTCTCACGGAAG 57.249 50.000 0.00 0.00 33.16 3.46
230 248 0.898320 ACCATGTCTCTCACGGAAGG 59.102 55.000 0.00 0.00 33.16 3.46
273 292 0.756294 TTCCGTTTCTGAGAGGCACA 59.244 50.000 0.00 0.00 0.00 4.57
287 306 2.338620 CACAACCGTGCCTCTCGA 59.661 61.111 0.00 0.00 36.06 4.04
289 308 2.201022 ACAACCGTGCCTCTCGAGT 61.201 57.895 13.13 0.00 0.00 4.18
297 316 1.996191 GTGCCTCTCGAGTAAGCAAAG 59.004 52.381 21.97 7.93 34.79 2.77
300 319 1.066858 CCTCTCGAGTAAGCAAAGCCA 60.067 52.381 13.13 0.00 0.00 4.75
309 328 4.007457 GCAAAGCCATGCCTCTCA 57.993 55.556 0.00 0.00 40.49 3.27
312 331 1.377725 AAAGCCATGCCTCTCACGG 60.378 57.895 0.00 0.00 0.00 4.94
380 402 1.134699 CCATGCCTCTCGACTAAGCAA 60.135 52.381 0.00 0.00 36.95 3.91
383 405 3.334583 TGCCTCTCGACTAAGCAAAAT 57.665 42.857 0.00 0.00 0.00 1.82
385 407 3.262420 GCCTCTCGACTAAGCAAAATCA 58.738 45.455 0.00 0.00 0.00 2.57
420 445 3.073144 GCAAAACCGTGCTTACAGAAA 57.927 42.857 0.00 0.00 41.51 2.52
533 561 2.184830 CCATGCATGCCTCTCGTGG 61.185 63.158 21.69 9.73 32.31 4.94
537 565 1.078848 GCATGCCTCTCGTGGAAGT 60.079 57.895 6.36 0.00 32.31 3.01
542 570 2.762745 TGCCTCTCGTGGAAGTAAAAC 58.237 47.619 0.00 0.00 0.00 2.43
543 571 1.725164 GCCTCTCGTGGAAGTAAAACG 59.275 52.381 0.00 0.00 38.64 3.60
544 572 2.865276 GCCTCTCGTGGAAGTAAAACGT 60.865 50.000 0.00 0.00 38.43 3.99
545 573 2.729882 CCTCTCGTGGAAGTAAAACGTG 59.270 50.000 0.00 0.00 38.43 4.49
546 574 2.129607 TCTCGTGGAAGTAAAACGTGC 58.870 47.619 0.00 0.00 38.43 5.34
547 575 1.193874 CTCGTGGAAGTAAAACGTGCC 59.806 52.381 0.00 0.00 38.43 5.01
548 576 1.202557 TCGTGGAAGTAAAACGTGCCT 60.203 47.619 0.00 0.00 38.43 4.75
549 577 1.193874 CGTGGAAGTAAAACGTGCCTC 59.806 52.381 0.00 0.00 32.79 4.70
550 578 2.490991 GTGGAAGTAAAACGTGCCTCT 58.509 47.619 0.00 0.00 0.00 3.69
551 579 2.479275 GTGGAAGTAAAACGTGCCTCTC 59.521 50.000 0.00 0.00 0.00 3.20
552 580 2.103432 TGGAAGTAAAACGTGCCTCTCA 59.897 45.455 0.00 0.00 0.00 3.27
553 581 2.479275 GGAAGTAAAACGTGCCTCTCAC 59.521 50.000 0.00 0.00 42.23 3.51
586 614 9.856803 AATGTATTTTTACGCACATTGTTTTTC 57.143 25.926 0.00 0.00 39.49 2.29
588 616 9.088512 TGTATTTTTACGCACATTGTTTTTCTT 57.911 25.926 0.00 0.00 0.00 2.52
589 617 9.909043 GTATTTTTACGCACATTGTTTTTCTTT 57.091 25.926 0.00 0.00 0.00 2.52
602 642 9.019764 CATTGTTTTTCTTTCGAAAAGCTAAGA 57.980 29.630 12.41 1.26 46.45 2.10
611 651 2.159693 CGAAAAGCTAAGAAAGACCGGC 60.160 50.000 0.00 0.00 0.00 6.13
613 653 0.606604 AAGCTAAGAAAGACCGGCGA 59.393 50.000 9.30 0.00 0.00 5.54
628 668 1.272784 GGCGAAAAACCGAAAAGCCG 61.273 55.000 0.00 0.00 33.43 5.52
660 700 5.756195 TGGAAATATCATCTGAAAAGCCG 57.244 39.130 0.00 0.00 0.00 5.52
662 702 5.528690 TGGAAATATCATCTGAAAAGCCGAG 59.471 40.000 0.00 0.00 0.00 4.63
687 730 5.167138 CGCGTGCGTAAAAATACAAAAAT 57.833 34.783 6.00 0.00 34.35 1.82
696 739 9.678247 GCGTAAAAATACAAAAATAAAATCCGG 57.322 29.630 0.00 0.00 0.00 5.14
723 766 3.595108 CTGAGAGCGCGACACGTGA 62.595 63.158 25.01 0.00 46.11 4.35
747 791 3.184683 CTGAGAGCGCGCCAAGTC 61.185 66.667 30.33 19.19 0.00 3.01
748 792 3.639541 CTGAGAGCGCGCCAAGTCT 62.640 63.158 30.33 24.07 0.00 3.24
749 793 2.433318 GAGAGCGCGCCAAGTCTT 60.433 61.111 30.33 7.05 0.00 3.01
750 794 2.029844 GAGAGCGCGCCAAGTCTTT 61.030 57.895 30.33 6.10 0.00 2.52
751 795 1.569479 GAGAGCGCGCCAAGTCTTTT 61.569 55.000 30.33 5.17 0.00 2.27
752 796 1.154395 GAGCGCGCCAAGTCTTTTC 60.154 57.895 30.33 11.81 0.00 2.29
753 797 1.569479 GAGCGCGCCAAGTCTTTTCT 61.569 55.000 30.33 3.57 0.00 2.52
754 798 1.166531 AGCGCGCCAAGTCTTTTCTT 61.167 50.000 30.33 0.00 0.00 2.52
755 799 0.317854 GCGCGCCAAGTCTTTTCTTT 60.318 50.000 23.24 0.00 0.00 2.52
756 800 1.864029 GCGCGCCAAGTCTTTTCTTTT 60.864 47.619 23.24 0.00 0.00 2.27
757 801 2.603652 GCGCGCCAAGTCTTTTCTTTTA 60.604 45.455 23.24 0.00 0.00 1.52
758 802 3.623863 CGCGCCAAGTCTTTTCTTTTAA 58.376 40.909 0.00 0.00 0.00 1.52
759 803 3.664025 CGCGCCAAGTCTTTTCTTTTAAG 59.336 43.478 0.00 0.00 0.00 1.85
760 804 4.553938 CGCGCCAAGTCTTTTCTTTTAAGA 60.554 41.667 0.00 0.00 0.00 2.10
770 814 6.846786 GTCTTTTCTTTTAAGACAACGAGAGC 59.153 38.462 10.05 0.00 46.78 4.09
771 815 4.966850 TTCTTTTAAGACAACGAGAGCG 57.033 40.909 0.00 0.00 37.98 5.03
772 816 2.729882 TCTTTTAAGACAACGAGAGCGC 59.270 45.455 0.00 0.00 42.48 5.92
773 817 1.057636 TTTAAGACAACGAGAGCGCG 58.942 50.000 0.00 0.00 42.48 6.86
774 818 1.342082 TTAAGACAACGAGAGCGCGC 61.342 55.000 26.66 26.66 42.48 6.86
782 826 4.521062 GAGAGCGCGCCAGGTGAT 62.521 66.667 30.33 7.05 0.00 3.06
783 827 4.087892 AGAGCGCGCCAGGTGATT 62.088 61.111 30.33 6.10 0.00 2.57
784 828 3.869272 GAGCGCGCCAGGTGATTG 61.869 66.667 30.33 0.00 0.00 2.67
788 832 3.818787 GCGCCAGGTGATTGCCAG 61.819 66.667 3.39 0.00 0.00 4.85
789 833 2.046023 CGCCAGGTGATTGCCAGA 60.046 61.111 0.00 0.00 0.00 3.86
790 834 2.110967 CGCCAGGTGATTGCCAGAG 61.111 63.158 0.00 0.00 0.00 3.35
791 835 1.751927 GCCAGGTGATTGCCAGAGG 60.752 63.158 0.00 0.00 0.00 3.69
810 854 3.457099 CTCCAGAAGCTTGCTCTCC 57.543 57.895 2.10 0.00 0.00 3.71
811 855 0.612229 CTCCAGAAGCTTGCTCTCCA 59.388 55.000 2.10 0.00 0.00 3.86
812 856 1.002888 CTCCAGAAGCTTGCTCTCCAA 59.997 52.381 2.10 0.00 0.00 3.53
818 862 4.198625 CTTGCTCTCCAAGGCGAG 57.801 61.111 1.75 1.75 45.78 5.03
822 866 2.659016 CTCTCCAAGGCGAGCACA 59.341 61.111 0.00 0.00 0.00 4.57
823 867 1.447489 CTCTCCAAGGCGAGCACAG 60.447 63.158 0.00 0.00 0.00 3.66
824 868 2.164865 CTCTCCAAGGCGAGCACAGT 62.165 60.000 0.00 0.00 0.00 3.55
825 869 1.302033 CTCCAAGGCGAGCACAGTT 60.302 57.895 0.00 0.00 0.00 3.16
826 870 0.886490 CTCCAAGGCGAGCACAGTTT 60.886 55.000 0.00 0.00 0.00 2.66
827 871 0.465460 TCCAAGGCGAGCACAGTTTT 60.465 50.000 0.00 0.00 0.00 2.43
828 872 0.385390 CCAAGGCGAGCACAGTTTTT 59.615 50.000 0.00 0.00 0.00 1.94
846 890 1.234821 TTTTAGGCGAGCACAGTTGG 58.765 50.000 0.00 0.00 0.00 3.77
847 891 0.605319 TTTAGGCGAGCACAGTTGGG 60.605 55.000 0.00 0.00 0.00 4.12
848 892 3.605749 TAGGCGAGCACAGTTGGGC 62.606 63.158 0.00 0.00 46.94 5.36
854 898 3.058160 GCACAGTTGGGCTCGCAT 61.058 61.111 0.00 0.00 42.27 4.73
855 899 2.629656 GCACAGTTGGGCTCGCATT 61.630 57.895 0.00 0.00 42.27 3.56
856 900 1.210931 CACAGTTGGGCTCGCATTG 59.789 57.895 0.00 0.00 0.00 2.82
857 901 1.228245 ACAGTTGGGCTCGCATTGT 60.228 52.632 0.00 0.00 0.00 2.71
858 902 1.210931 CAGTTGGGCTCGCATTGTG 59.789 57.895 0.00 0.00 0.00 3.33
859 903 2.126346 GTTGGGCTCGCATTGTGC 60.126 61.111 0.00 0.00 40.69 4.57
860 904 2.282391 TTGGGCTCGCATTGTGCT 60.282 55.556 0.10 0.00 42.25 4.40
861 905 1.002746 TTGGGCTCGCATTGTGCTA 60.003 52.632 0.10 0.00 42.25 3.49
862 906 1.305219 TTGGGCTCGCATTGTGCTAC 61.305 55.000 0.10 0.00 42.25 3.58
863 907 1.745115 GGGCTCGCATTGTGCTACA 60.745 57.895 0.10 0.00 42.25 2.74
864 908 1.097547 GGGCTCGCATTGTGCTACAT 61.098 55.000 0.10 0.00 42.25 2.29
865 909 0.734889 GGCTCGCATTGTGCTACATT 59.265 50.000 0.10 0.00 42.25 2.71
866 910 1.532505 GGCTCGCATTGTGCTACATTG 60.533 52.381 0.10 0.00 42.25 2.82
867 911 1.818850 CTCGCATTGTGCTACATTGC 58.181 50.000 18.17 18.17 46.27 3.56
875 919 6.519353 CATTGTGCTACATTGCAAATATGG 57.481 37.500 1.71 0.00 45.12 2.74
876 920 4.652421 TGTGCTACATTGCAAATATGGG 57.348 40.909 1.71 0.00 45.12 4.00
877 921 3.181477 TGTGCTACATTGCAAATATGGGC 60.181 43.478 1.71 7.42 45.12 5.36
878 922 2.364970 TGCTACATTGCAAATATGGGCC 59.635 45.455 1.71 0.00 40.29 5.80
879 923 2.364970 GCTACATTGCAAATATGGGCCA 59.635 45.455 9.61 9.61 0.00 5.36
880 924 3.181467 GCTACATTGCAAATATGGGCCAA 60.181 43.478 11.89 0.00 0.00 4.52
881 925 3.547054 ACATTGCAAATATGGGCCAAG 57.453 42.857 11.89 0.00 0.00 3.61
882 926 2.171027 ACATTGCAAATATGGGCCAAGG 59.829 45.455 11.89 0.00 0.00 3.61
883 927 2.244486 TTGCAAATATGGGCCAAGGA 57.756 45.000 11.89 0.00 0.00 3.36
884 928 2.244486 TGCAAATATGGGCCAAGGAA 57.756 45.000 11.89 0.00 0.00 3.36
885 929 2.544721 TGCAAATATGGGCCAAGGAAA 58.455 42.857 11.89 0.00 0.00 3.13
886 930 2.235898 TGCAAATATGGGCCAAGGAAAC 59.764 45.455 11.89 0.00 0.00 2.78
887 931 2.419990 GCAAATATGGGCCAAGGAAACC 60.420 50.000 11.89 0.00 0.00 3.27
888 932 1.775385 AATATGGGCCAAGGAAACCG 58.225 50.000 11.89 0.00 0.00 4.44
889 933 0.106217 ATATGGGCCAAGGAAACCGG 60.106 55.000 11.89 0.00 0.00 5.28
890 934 1.502527 TATGGGCCAAGGAAACCGGT 61.503 55.000 11.89 0.00 0.00 5.28
891 935 2.203582 GGGCCAAGGAAACCGGTT 60.204 61.111 15.86 15.86 0.00 4.44
892 936 2.570284 GGGCCAAGGAAACCGGTTG 61.570 63.158 23.08 8.62 0.00 3.77
893 937 2.570284 GGCCAAGGAAACCGGTTGG 61.570 63.158 23.08 19.34 43.19 3.77
894 938 1.529713 GCCAAGGAAACCGGTTGGA 60.530 57.895 23.08 0.00 43.01 3.53
895 939 1.802337 GCCAAGGAAACCGGTTGGAC 61.802 60.000 23.08 14.10 43.01 4.02
896 940 1.176619 CCAAGGAAACCGGTTGGACC 61.177 60.000 23.08 22.82 43.01 4.46
897 941 1.152138 AAGGAAACCGGTTGGACCC 59.848 57.895 23.08 18.75 39.21 4.46
898 942 1.647334 AAGGAAACCGGTTGGACCCA 61.647 55.000 23.08 0.00 39.21 4.51
899 943 1.076014 GGAAACCGGTTGGACCCAT 59.924 57.895 23.08 2.08 39.21 4.00
900 944 1.248101 GGAAACCGGTTGGACCCATG 61.248 60.000 23.08 0.00 39.21 3.66
901 945 0.538746 GAAACCGGTTGGACCCATGT 60.539 55.000 23.08 0.28 39.21 3.21
902 946 0.772384 AAACCGGTTGGACCCATGTA 59.228 50.000 23.08 0.00 39.21 2.29
903 947 0.037160 AACCGGTTGGACCCATGTAC 59.963 55.000 21.56 0.00 39.21 2.90
904 948 1.078001 CCGGTTGGACCCATGTACC 60.078 63.158 0.00 0.00 37.49 3.34
905 949 1.078001 CGGTTGGACCCATGTACCC 60.078 63.158 3.51 0.00 33.75 3.69
906 950 1.305287 GGTTGGACCCATGTACCCC 59.695 63.158 0.00 0.00 30.04 4.95
907 951 1.305287 GTTGGACCCATGTACCCCC 59.695 63.158 0.00 0.00 0.00 5.40
908 952 1.151565 TTGGACCCATGTACCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
909 953 0.776479 TTGGACCCATGTACCCCCAA 60.776 55.000 0.00 0.00 0.00 4.12
910 954 0.553862 TGGACCCATGTACCCCCAAT 60.554 55.000 0.00 0.00 0.00 3.16
911 955 0.106217 GGACCCATGTACCCCCAATG 60.106 60.000 0.00 0.00 0.00 2.82
912 956 0.106217 GACCCATGTACCCCCAATGG 60.106 60.000 0.00 0.00 0.00 3.16
913 957 0.853586 ACCCATGTACCCCCAATGGT 60.854 55.000 0.00 0.00 42.62 3.55
914 958 0.106217 CCCATGTACCCCCAATGGTC 60.106 60.000 0.00 0.00 39.91 4.02
915 959 0.106217 CCATGTACCCCCAATGGTCC 60.106 60.000 0.00 0.00 39.91 4.46
924 968 1.586028 CCAATGGTCCAAACGGCAG 59.414 57.895 0.00 0.00 0.00 4.85
951 995 3.470888 CCAGTCTAGGCCCACCGG 61.471 72.222 0.00 0.00 42.76 5.28
952 996 2.363795 CAGTCTAGGCCCACCGGA 60.364 66.667 9.46 0.00 42.76 5.14
962 1006 2.603473 CCACCGGAGACCACCAGA 60.603 66.667 9.46 0.00 0.00 3.86
1011 1060 2.092321 CCGGTCTCTTCTCTTCCTCCTA 60.092 54.545 0.00 0.00 0.00 2.94
1019 1074 1.726533 CTCTTCCTCCTACCGTCGCC 61.727 65.000 0.00 0.00 0.00 5.54
1020 1075 2.757099 TTCCTCCTACCGTCGCCC 60.757 66.667 0.00 0.00 0.00 6.13
1024 1079 4.371417 TCCTACCGTCGCCCCAGT 62.371 66.667 0.00 0.00 0.00 4.00
1025 1080 3.387947 CCTACCGTCGCCCCAGTT 61.388 66.667 0.00 0.00 0.00 3.16
1026 1081 2.660802 CTACCGTCGCCCCAGTTT 59.339 61.111 0.00 0.00 0.00 2.66
1027 1082 1.447314 CTACCGTCGCCCCAGTTTC 60.447 63.158 0.00 0.00 0.00 2.78
1028 1083 1.885163 CTACCGTCGCCCCAGTTTCT 61.885 60.000 0.00 0.00 0.00 2.52
1029 1084 1.880819 TACCGTCGCCCCAGTTTCTC 61.881 60.000 0.00 0.00 0.00 2.87
1030 1085 2.657237 CGTCGCCCCAGTTTCTCT 59.343 61.111 0.00 0.00 0.00 3.10
1031 1086 1.004918 CGTCGCCCCAGTTTCTCTT 60.005 57.895 0.00 0.00 0.00 2.85
1032 1087 1.014564 CGTCGCCCCAGTTTCTCTTC 61.015 60.000 0.00 0.00 0.00 2.87
1033 1088 1.014564 GTCGCCCCAGTTTCTCTTCG 61.015 60.000 0.00 0.00 0.00 3.79
1048 1103 1.444119 CTTCGCTCCTCTCCTCTCCG 61.444 65.000 0.00 0.00 0.00 4.63
1055 1126 1.152839 CTCTCCTCTCCGTCTCCCC 60.153 68.421 0.00 0.00 0.00 4.81
1056 1127 1.927569 CTCTCCTCTCCGTCTCCCCA 61.928 65.000 0.00 0.00 0.00 4.96
1057 1128 1.000486 CTCCTCTCCGTCTCCCCAA 60.000 63.158 0.00 0.00 0.00 4.12
1058 1129 0.614979 CTCCTCTCCGTCTCCCCAAA 60.615 60.000 0.00 0.00 0.00 3.28
1059 1130 0.042731 TCCTCTCCGTCTCCCCAAAT 59.957 55.000 0.00 0.00 0.00 2.32
1060 1131 0.466124 CCTCTCCGTCTCCCCAAATC 59.534 60.000 0.00 0.00 0.00 2.17
1062 1133 0.252513 TCTCCGTCTCCCCAAATCCA 60.253 55.000 0.00 0.00 0.00 3.41
1063 1134 0.839946 CTCCGTCTCCCCAAATCCAT 59.160 55.000 0.00 0.00 0.00 3.41
1064 1135 0.837272 TCCGTCTCCCCAAATCCATC 59.163 55.000 0.00 0.00 0.00 3.51
1102 1174 1.612462 CCTCCGACAAGGTTTTACCCC 60.612 57.143 0.00 0.00 39.75 4.95
1105 1177 1.579964 CGACAAGGTTTTACCCCCGC 61.580 60.000 0.00 0.00 39.75 6.13
1106 1178 1.579964 GACAAGGTTTTACCCCCGCG 61.580 60.000 0.00 0.00 39.75 6.46
1107 1179 2.674033 AAGGTTTTACCCCCGCGC 60.674 61.111 0.00 0.00 39.75 6.86
1204 1277 1.383248 CTCCCTCCATTCCGACCCT 60.383 63.158 0.00 0.00 0.00 4.34
1205 1278 0.983378 CTCCCTCCATTCCGACCCTT 60.983 60.000 0.00 0.00 0.00 3.95
1206 1279 0.981277 TCCCTCCATTCCGACCCTTC 60.981 60.000 0.00 0.00 0.00 3.46
1207 1280 1.527370 CCTCCATTCCGACCCTTCC 59.473 63.158 0.00 0.00 0.00 3.46
1208 1281 0.983378 CCTCCATTCCGACCCTTCCT 60.983 60.000 0.00 0.00 0.00 3.36
1209 1282 0.466124 CTCCATTCCGACCCTTCCTC 59.534 60.000 0.00 0.00 0.00 3.71
1210 1283 0.981277 TCCATTCCGACCCTTCCTCC 60.981 60.000 0.00 0.00 0.00 4.30
1211 1284 1.527370 CATTCCGACCCTTCCTCCC 59.473 63.158 0.00 0.00 0.00 4.30
1212 1285 1.693103 ATTCCGACCCTTCCTCCCC 60.693 63.158 0.00 0.00 0.00 4.81
1244 1371 2.240612 GATTTGGTGCCGTGTCGAGC 62.241 60.000 0.00 0.00 0.00 5.03
1418 1615 0.392193 ACTTTCTGCGCATCCTCTGG 60.392 55.000 12.24 0.00 0.00 3.86
1496 1711 1.957186 GGCGCGGTGTGTTTCACTA 60.957 57.895 8.83 0.00 45.50 2.74
1519 1734 0.040514 TTGTGCGGAATTCGTGCTTG 60.041 50.000 18.48 0.00 41.72 4.01
1520 1735 1.797537 GTGCGGAATTCGTGCTTGC 60.798 57.895 18.48 8.14 41.72 4.01
1521 1736 1.965930 TGCGGAATTCGTGCTTGCT 60.966 52.632 18.48 0.00 41.72 3.91
1522 1737 1.210155 GCGGAATTCGTGCTTGCTT 59.790 52.632 12.56 0.00 41.72 3.91
1554 1769 5.004535 CGGCTACGAGTTTAATTTCAGAGTC 59.995 44.000 0.00 0.00 44.60 3.36
1565 1780 4.574674 ATTTCAGAGTCTGGTAATGCCA 57.425 40.909 19.99 0.00 46.95 4.92
1594 1828 6.215495 TCCTTTGGTCTTTGTTGTTTTAGG 57.785 37.500 0.00 0.00 0.00 2.69
1596 1830 4.394439 TTGGTCTTTGTTGTTTTAGGCC 57.606 40.909 0.00 0.00 32.99 5.19
1679 1927 2.368221 GGGAGATCTCTAGTGCTGCAAT 59.632 50.000 21.81 8.00 0.00 3.56
1690 1938 2.094700 AGTGCTGCAATCTGAAATGCTG 60.095 45.455 2.77 16.29 42.97 4.41
1709 1964 1.800586 TGCTGCTTTGTCTTGTCGATC 59.199 47.619 0.00 0.00 0.00 3.69
1733 1989 7.386059 TCCAAATCTGAAAGGAATTTTAAGCC 58.614 34.615 0.00 0.00 28.57 4.35
1900 2191 9.072294 GTACCAACAATATAAATTTGTGAGCAC 57.928 33.333 0.00 0.00 37.38 4.40
1940 2232 4.787598 CAGACAACTGTTCCTTGTAATGC 58.212 43.478 0.00 0.00 39.11 3.56
2091 2450 2.977914 TCTGAATGTGGCTAACTCTGC 58.022 47.619 0.00 0.00 0.00 4.26
2132 2492 2.451490 CTCTGTTCTGAGGGAGTGCTA 58.549 52.381 0.00 0.00 0.00 3.49
2135 2495 1.895798 TGTTCTGAGGGAGTGCTACTG 59.104 52.381 0.00 0.00 0.00 2.74
2348 2714 7.552687 CACTTAGTTACAGATAAGCCCATTTCA 59.447 37.037 0.00 0.00 33.20 2.69
2533 2913 7.270779 TCTGATCTGTTCCTCAATGATACAAG 58.729 38.462 0.00 0.00 0.00 3.16
2550 2933 9.809395 ATGATACAAGCTCTGTACTTACCTATA 57.191 33.333 9.85 0.00 43.35 1.31
2921 3520 2.337359 TGCACCTTACCCTAAGAGGT 57.663 50.000 0.00 0.00 44.39 3.85
3014 3623 5.883661 TCAGTCTTGCTTGAGAAAAGTTTG 58.116 37.500 0.00 0.00 0.00 2.93
3030 3647 7.920682 AGAAAAGTTTGGTGTTGTATGAATGTC 59.079 33.333 0.00 0.00 0.00 3.06
3086 3704 6.764308 ATCCATGAAGTGAACTATGTTTGG 57.236 37.500 0.00 0.00 0.00 3.28
3087 3705 5.630121 TCCATGAAGTGAACTATGTTTGGT 58.370 37.500 0.00 0.00 0.00 3.67
3133 3754 8.949953 GTGCAAAATTTTGAAAATCTGACATTG 58.050 29.630 30.40 3.36 40.55 2.82
4328 4985 9.807386 CGTTTTTCTACCAATGTTCTAACTTAG 57.193 33.333 0.00 0.00 0.00 2.18
4495 5159 5.676079 GCTTTTTGTGCTGTGTGACTTTCTA 60.676 40.000 0.00 0.00 0.00 2.10
4513 5177 2.166459 TCTATGTCTTCTGCTGGTTCGG 59.834 50.000 0.00 0.00 0.00 4.30
4524 5188 2.360726 GGTTCGGTTCCGCCCATT 60.361 61.111 6.35 0.00 0.00 3.16
4535 5199 1.445926 CGCCCATTTTTCTTGCCCG 60.446 57.895 0.00 0.00 0.00 6.13
4594 5302 3.886505 CTCTCAAGCCTCGACTACCTTAT 59.113 47.826 0.00 0.00 0.00 1.73
4609 5318 2.215451 CTTATGCACCCCCACCAGCT 62.215 60.000 0.00 0.00 0.00 4.24
4645 5354 1.522355 CTGCGATTCCAGCGACCAT 60.522 57.895 0.00 0.00 37.44 3.55
4729 5581 8.903723 CGTATTGTAAAAATCTAGGTCTCGATC 58.096 37.037 0.00 0.00 0.00 3.69
4849 5701 4.162131 ACTTGCAATTTCTGGTCCACTTTT 59.838 37.500 0.00 0.00 0.00 2.27
4869 5721 8.391106 CACTTTTAGTTTCTGTATGTGGCTATC 58.609 37.037 0.00 0.00 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.718734 GGTTTATGAGATAGAACGTTTTGAAGT 58.281 33.333 0.46 0.00 0.00 3.01
1 2 7.898309 CGGTTTATGAGATAGAACGTTTTGAAG 59.102 37.037 0.46 0.00 0.00 3.02
9 10 3.179795 CGCACGGTTTATGAGATAGAACG 59.820 47.826 0.00 0.00 36.28 3.95
13 14 3.050619 GGACGCACGGTTTATGAGATAG 58.949 50.000 0.00 0.00 0.00 2.08
20 21 2.676342 GAGATTTGGACGCACGGTTTAT 59.324 45.455 0.00 0.00 0.00 1.40
64 65 4.752101 AGTTTTGAAGATCTCGTTGTGAGG 59.248 41.667 0.00 0.00 45.32 3.86
68 69 8.433421 TTTTCTAGTTTTGAAGATCTCGTTGT 57.567 30.769 0.00 0.00 0.00 3.32
91 92 6.210287 TCGTCAAAACCTACCAACATTTTT 57.790 33.333 0.00 0.00 0.00 1.94
92 93 5.838531 TCGTCAAAACCTACCAACATTTT 57.161 34.783 0.00 0.00 0.00 1.82
93 94 5.358725 AGTTCGTCAAAACCTACCAACATTT 59.641 36.000 0.00 0.00 0.00 2.32
94 95 4.885325 AGTTCGTCAAAACCTACCAACATT 59.115 37.500 0.00 0.00 0.00 2.71
128 129 3.697166 AGTGCTCCCATTTCGGTTTATT 58.303 40.909 0.00 0.00 0.00 1.40
129 130 3.366052 AGTGCTCCCATTTCGGTTTAT 57.634 42.857 0.00 0.00 0.00 1.40
130 131 2.871096 AGTGCTCCCATTTCGGTTTA 57.129 45.000 0.00 0.00 0.00 2.01
139 141 6.295859 GGGAAAGAAAAATAAAGTGCTCCCAT 60.296 38.462 0.00 0.00 38.93 4.00
140 142 5.011635 GGGAAAGAAAAATAAAGTGCTCCCA 59.988 40.000 0.00 0.00 38.93 4.37
157 159 1.948834 GGAAACGGTTTTCGGGAAAGA 59.051 47.619 7.65 0.00 41.97 2.52
173 175 1.445410 CGGTCGTGCATCTCGGAAA 60.445 57.895 0.00 0.00 0.00 3.13
174 176 2.180769 CGGTCGTGCATCTCGGAA 59.819 61.111 0.00 0.00 0.00 4.30
175 177 3.060000 ACGGTCGTGCATCTCGGA 61.060 61.111 0.00 0.00 0.00 4.55
176 178 2.880879 CACGGTCGTGCATCTCGG 60.881 66.667 10.59 0.00 39.39 4.63
187 201 1.066114 CTTTCGCGAGAGACACGGTC 61.066 60.000 21.21 0.00 43.69 4.79
214 228 4.351874 TTTTTCCTTCCGTGAGAGACAT 57.648 40.909 0.00 0.00 0.00 3.06
258 276 0.868406 CGGTTGTGCCTCTCAGAAAC 59.132 55.000 0.00 0.00 32.75 2.78
273 292 0.526662 CTTACTCGAGAGGCACGGTT 59.473 55.000 21.68 0.00 0.00 4.44
287 306 1.005215 AGAGGCATGGCTTTGCTTACT 59.995 47.619 24.18 10.82 42.38 2.24
289 308 1.004628 TGAGAGGCATGGCTTTGCTTA 59.995 47.619 24.18 9.89 42.38 3.09
300 319 0.984230 TTTCCTTCCGTGAGAGGCAT 59.016 50.000 0.00 0.00 0.00 4.40
372 394 4.381292 GCAAGAGGCATGATTTTGCTTAGT 60.381 41.667 15.20 0.00 43.97 2.24
373 395 4.110482 GCAAGAGGCATGATTTTGCTTAG 58.890 43.478 15.20 0.00 43.97 2.18
374 396 4.114058 GCAAGAGGCATGATTTTGCTTA 57.886 40.909 15.20 0.00 43.97 3.09
447 474 0.661020 AACCGTGCTTCTCAAAACCG 59.339 50.000 0.00 0.00 0.00 4.44
448 475 1.404035 ACAACCGTGCTTCTCAAAACC 59.596 47.619 0.00 0.00 0.00 3.27
470 498 0.375106 GATTTTGCTTCCGCGAGAGG 59.625 55.000 8.23 4.88 39.65 3.69
496 524 0.179222 GTTTTGCTTCCGCGAGTAGC 60.179 55.000 8.23 13.87 43.95 3.58
497 525 0.442699 GGTTTTGCTTCCGCGAGTAG 59.557 55.000 8.23 2.26 39.65 2.57
498 526 0.249953 TGGTTTTGCTTCCGCGAGTA 60.250 50.000 8.23 0.00 39.65 2.59
499 527 0.889186 ATGGTTTTGCTTCCGCGAGT 60.889 50.000 8.23 0.00 39.65 4.18
517 545 0.463295 CTTCCACGAGAGGCATGCAT 60.463 55.000 21.36 13.78 0.00 3.96
518 546 1.078918 CTTCCACGAGAGGCATGCA 60.079 57.895 21.36 0.00 0.00 3.96
519 547 0.175760 TACTTCCACGAGAGGCATGC 59.824 55.000 9.90 9.90 0.00 4.06
520 548 2.672961 TTACTTCCACGAGAGGCATG 57.327 50.000 0.00 0.00 0.00 4.06
521 549 3.335579 GTTTTACTTCCACGAGAGGCAT 58.664 45.455 0.00 0.00 0.00 4.40
533 561 3.790212 GTGAGAGGCACGTTTTACTTC 57.210 47.619 0.00 0.00 37.83 3.01
571 599 4.022464 TCGAAAGAAAAACAATGTGCGT 57.978 36.364 0.00 0.00 37.03 5.24
586 614 5.374898 CGGTCTTTCTTAGCTTTTCGAAAG 58.625 41.667 10.98 15.05 42.11 2.62
588 616 3.744426 CCGGTCTTTCTTAGCTTTTCGAA 59.256 43.478 0.00 0.00 0.00 3.71
589 617 3.323243 CCGGTCTTTCTTAGCTTTTCGA 58.677 45.455 0.00 0.00 0.00 3.71
590 618 2.159693 GCCGGTCTTTCTTAGCTTTTCG 60.160 50.000 1.90 0.00 0.00 3.46
602 642 1.650363 CGGTTTTTCGCCGGTCTTT 59.350 52.632 1.90 0.00 44.98 2.52
611 651 2.108178 TTCGGCTTTTCGGTTTTTCG 57.892 45.000 0.00 0.00 0.00 3.46
637 677 6.064060 TCGGCTTTTCAGATGATATTTCCAT 58.936 36.000 0.00 0.00 0.00 3.41
638 678 5.436175 TCGGCTTTTCAGATGATATTTCCA 58.564 37.500 0.00 0.00 0.00 3.53
639 679 5.760253 TCTCGGCTTTTCAGATGATATTTCC 59.240 40.000 0.00 0.00 0.00 3.13
640 680 6.851222 TCTCGGCTTTTCAGATGATATTTC 57.149 37.500 0.00 0.00 0.00 2.17
644 684 4.112634 CGTTCTCGGCTTTTCAGATGATA 58.887 43.478 0.00 0.00 0.00 2.15
645 685 2.932614 CGTTCTCGGCTTTTCAGATGAT 59.067 45.455 0.00 0.00 0.00 2.45
646 686 2.337583 CGTTCTCGGCTTTTCAGATGA 58.662 47.619 0.00 0.00 0.00 2.92
648 688 1.079503 GCGTTCTCGGCTTTTCAGAT 58.920 50.000 0.00 0.00 37.56 2.90
650 690 1.130613 CGCGTTCTCGGCTTTTCAG 59.869 57.895 0.00 0.00 37.56 3.02
652 692 1.154654 CACGCGTTCTCGGCTTTTC 60.155 57.895 10.22 0.00 37.56 2.29
653 693 2.935955 CACGCGTTCTCGGCTTTT 59.064 55.556 10.22 0.00 37.56 2.27
681 721 5.163550 GGACTCCCTCCGGATTTTATTTTTG 60.164 44.000 3.57 0.00 37.60 2.44
687 730 2.116238 CAGGACTCCCTCCGGATTTTA 58.884 52.381 3.57 0.00 45.10 1.52
696 739 2.781158 GCGCTCTCAGGACTCCCTC 61.781 68.421 0.00 0.00 42.02 4.30
703 746 4.103103 CGTGTCGCGCTCTCAGGA 62.103 66.667 5.56 0.00 0.00 3.86
704 747 4.406173 ACGTGTCGCGCTCTCAGG 62.406 66.667 5.56 9.85 46.11 3.86
706 749 3.656045 TCACGTGTCGCGCTCTCA 61.656 61.111 16.51 0.00 46.11 3.27
707 750 3.166630 GTCACGTGTCGCGCTCTC 61.167 66.667 16.51 0.00 46.11 3.20
736 780 0.317854 AAAGAAAAGACTTGGCGCGC 60.318 50.000 25.94 25.94 0.00 6.86
747 791 5.841296 CGCTCTCGTTGTCTTAAAAGAAAAG 59.159 40.000 0.00 0.00 33.09 2.27
748 792 5.734311 CGCTCTCGTTGTCTTAAAAGAAAA 58.266 37.500 0.00 0.00 36.68 2.29
749 793 4.318546 GCGCTCTCGTTGTCTTAAAAGAAA 60.319 41.667 0.00 0.00 35.90 2.52
750 794 3.183775 GCGCTCTCGTTGTCTTAAAAGAA 59.816 43.478 0.00 0.00 35.90 2.52
751 795 2.729882 GCGCTCTCGTTGTCTTAAAAGA 59.270 45.455 0.00 0.00 38.14 2.52
752 796 2.470781 CGCGCTCTCGTTGTCTTAAAAG 60.471 50.000 5.56 0.00 38.14 2.27
753 797 1.454276 CGCGCTCTCGTTGTCTTAAAA 59.546 47.619 5.56 0.00 38.14 1.52
754 798 1.057636 CGCGCTCTCGTTGTCTTAAA 58.942 50.000 5.56 0.00 38.14 1.52
755 799 1.342082 GCGCGCTCTCGTTGTCTTAA 61.342 55.000 26.67 0.00 38.14 1.85
756 800 1.800315 GCGCGCTCTCGTTGTCTTA 60.800 57.895 26.67 0.00 38.14 2.10
757 801 3.106407 GCGCGCTCTCGTTGTCTT 61.106 61.111 26.67 0.00 38.14 3.01
765 809 4.521062 ATCACCTGGCGCGCTCTC 62.521 66.667 32.29 15.45 0.00 3.20
766 810 4.087892 AATCACCTGGCGCGCTCT 62.088 61.111 32.29 7.83 0.00 4.09
767 811 3.869272 CAATCACCTGGCGCGCTC 61.869 66.667 32.29 21.22 0.00 5.03
771 815 3.818787 CTGGCAATCACCTGGCGC 61.819 66.667 0.00 0.00 44.56 6.53
772 816 2.046023 TCTGGCAATCACCTGGCG 60.046 61.111 0.00 0.00 44.56 5.69
773 817 1.751927 CCTCTGGCAATCACCTGGC 60.752 63.158 0.00 0.00 42.07 4.85
774 818 4.651867 CCTCTGGCAATCACCTGG 57.348 61.111 0.00 0.00 0.00 4.45
792 836 0.612229 TGGAGAGCAAGCTTCTGGAG 59.388 55.000 0.00 0.00 0.00 3.86
793 837 1.002888 CTTGGAGAGCAAGCTTCTGGA 59.997 52.381 0.00 0.00 0.00 3.86
794 838 1.451067 CTTGGAGAGCAAGCTTCTGG 58.549 55.000 0.00 0.00 0.00 3.86
795 839 1.451067 CCTTGGAGAGCAAGCTTCTG 58.549 55.000 0.00 0.00 0.00 3.02
796 840 0.322366 GCCTTGGAGAGCAAGCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
797 841 1.642952 CGCCTTGGAGAGCAAGCTTC 61.643 60.000 0.00 0.00 0.00 3.86
798 842 1.673665 CGCCTTGGAGAGCAAGCTT 60.674 57.895 0.00 0.00 0.00 3.74
799 843 2.046507 CGCCTTGGAGAGCAAGCT 60.047 61.111 0.00 0.00 0.00 3.74
800 844 2.046892 TCGCCTTGGAGAGCAAGC 60.047 61.111 0.00 0.00 0.00 4.01
801 845 4.198625 CTCGCCTTGGAGAGCAAG 57.801 61.111 7.44 0.00 36.08 4.01
805 849 1.447489 CTGTGCTCGCCTTGGAGAG 60.447 63.158 14.68 14.68 36.08 3.20
806 850 1.758440 AACTGTGCTCGCCTTGGAGA 61.758 55.000 0.00 0.00 36.08 3.71
807 851 0.886490 AAACTGTGCTCGCCTTGGAG 60.886 55.000 0.00 0.00 37.11 3.86
808 852 0.465460 AAAACTGTGCTCGCCTTGGA 60.465 50.000 0.00 0.00 0.00 3.53
809 853 0.385390 AAAAACTGTGCTCGCCTTGG 59.615 50.000 0.00 0.00 0.00 3.61
810 854 3.944871 AAAAACTGTGCTCGCCTTG 57.055 47.368 0.00 0.00 0.00 3.61
826 870 1.606668 CCAACTGTGCTCGCCTAAAAA 59.393 47.619 0.00 0.00 0.00 1.94
827 871 1.234821 CCAACTGTGCTCGCCTAAAA 58.765 50.000 0.00 0.00 0.00 1.52
828 872 0.605319 CCCAACTGTGCTCGCCTAAA 60.605 55.000 0.00 0.00 0.00 1.85
829 873 1.003839 CCCAACTGTGCTCGCCTAA 60.004 57.895 0.00 0.00 0.00 2.69
830 874 2.662596 CCCAACTGTGCTCGCCTA 59.337 61.111 0.00 0.00 0.00 3.93
833 877 3.426568 GAGCCCAACTGTGCTCGC 61.427 66.667 0.00 0.00 43.94 5.03
836 880 3.557903 ATGCGAGCCCAACTGTGCT 62.558 57.895 0.00 0.00 41.42 4.40
837 881 2.629656 AATGCGAGCCCAACTGTGC 61.630 57.895 0.00 0.00 0.00 4.57
838 882 1.210931 CAATGCGAGCCCAACTGTG 59.789 57.895 0.00 0.00 0.00 3.66
839 883 1.228245 ACAATGCGAGCCCAACTGT 60.228 52.632 0.00 0.00 0.00 3.55
840 884 1.210931 CACAATGCGAGCCCAACTG 59.789 57.895 0.00 0.00 0.00 3.16
841 885 2.629656 GCACAATGCGAGCCCAACT 61.630 57.895 0.00 0.00 31.71 3.16
842 886 2.126346 GCACAATGCGAGCCCAAC 60.126 61.111 0.00 0.00 31.71 3.77
852 896 5.464057 CCCATATTTGCAATGTAGCACAATG 59.536 40.000 0.00 0.00 45.61 2.82
853 897 5.603596 CCCATATTTGCAATGTAGCACAAT 58.396 37.500 0.00 0.00 45.61 2.71
854 898 4.680172 GCCCATATTTGCAATGTAGCACAA 60.680 41.667 0.00 0.00 45.61 3.33
855 899 3.181477 GCCCATATTTGCAATGTAGCACA 60.181 43.478 0.00 0.00 45.61 4.57
856 900 3.383761 GCCCATATTTGCAATGTAGCAC 58.616 45.455 0.00 0.00 45.61 4.40
857 901 2.364970 GGCCCATATTTGCAATGTAGCA 59.635 45.455 0.00 0.00 43.99 3.49
858 902 2.364970 TGGCCCATATTTGCAATGTAGC 59.635 45.455 0.00 1.21 0.00 3.58
859 903 4.501915 CCTTGGCCCATATTTGCAATGTAG 60.502 45.833 0.00 0.00 0.00 2.74
860 904 3.387374 CCTTGGCCCATATTTGCAATGTA 59.613 43.478 0.00 0.00 0.00 2.29
861 905 2.171027 CCTTGGCCCATATTTGCAATGT 59.829 45.455 0.00 0.00 0.00 2.71
862 906 2.435069 TCCTTGGCCCATATTTGCAATG 59.565 45.455 0.00 0.00 0.00 2.82
863 907 2.761809 TCCTTGGCCCATATTTGCAAT 58.238 42.857 0.00 0.00 0.00 3.56
864 908 2.244486 TCCTTGGCCCATATTTGCAA 57.756 45.000 0.00 0.00 0.00 4.08
865 909 2.235898 GTTTCCTTGGCCCATATTTGCA 59.764 45.455 0.00 0.00 0.00 4.08
866 910 2.419990 GGTTTCCTTGGCCCATATTTGC 60.420 50.000 0.00 0.00 0.00 3.68
867 911 2.159114 CGGTTTCCTTGGCCCATATTTG 60.159 50.000 0.00 0.00 0.00 2.32
868 912 2.107366 CGGTTTCCTTGGCCCATATTT 58.893 47.619 0.00 0.00 0.00 1.40
869 913 1.687996 CCGGTTTCCTTGGCCCATATT 60.688 52.381 0.00 0.00 0.00 1.28
870 914 0.106217 CCGGTTTCCTTGGCCCATAT 60.106 55.000 0.00 0.00 0.00 1.78
871 915 1.304952 CCGGTTTCCTTGGCCCATA 59.695 57.895 0.00 0.00 0.00 2.74
872 916 2.037208 CCGGTTTCCTTGGCCCAT 59.963 61.111 0.00 0.00 0.00 4.00
873 917 3.076217 AACCGGTTTCCTTGGCCCA 62.076 57.895 15.86 0.00 0.00 5.36
874 918 2.203582 AACCGGTTTCCTTGGCCC 60.204 61.111 15.86 0.00 0.00 5.80
875 919 2.570284 CCAACCGGTTTCCTTGGCC 61.570 63.158 19.55 0.00 0.00 5.36
876 920 1.529713 TCCAACCGGTTTCCTTGGC 60.530 57.895 19.55 0.00 35.36 4.52
877 921 1.176619 GGTCCAACCGGTTTCCTTGG 61.177 60.000 19.55 16.93 36.53 3.61
878 922 1.176619 GGGTCCAACCGGTTTCCTTG 61.177 60.000 19.55 6.68 39.83 3.61
879 923 1.152138 GGGTCCAACCGGTTTCCTT 59.848 57.895 19.55 0.00 39.83 3.36
880 924 1.432023 ATGGGTCCAACCGGTTTCCT 61.432 55.000 19.55 3.20 39.83 3.36
881 925 1.076014 ATGGGTCCAACCGGTTTCC 59.924 57.895 19.55 19.21 39.83 3.13
882 926 0.538746 ACATGGGTCCAACCGGTTTC 60.539 55.000 19.55 11.08 39.83 2.78
883 927 0.772384 TACATGGGTCCAACCGGTTT 59.228 50.000 19.55 1.83 39.83 3.27
884 928 0.037160 GTACATGGGTCCAACCGGTT 59.963 55.000 15.86 15.86 39.83 4.44
885 929 1.681076 GTACATGGGTCCAACCGGT 59.319 57.895 0.00 0.00 39.83 5.28
886 930 1.078001 GGTACATGGGTCCAACCGG 60.078 63.158 0.00 0.00 39.83 5.28
887 931 1.078001 GGGTACATGGGTCCAACCG 60.078 63.158 0.00 0.00 39.83 4.44
888 932 1.305287 GGGGTACATGGGTCCAACC 59.695 63.158 0.00 0.00 37.60 3.77
889 933 1.305287 GGGGGTACATGGGTCCAAC 59.695 63.158 0.00 0.00 0.00 3.77
890 934 0.776479 TTGGGGGTACATGGGTCCAA 60.776 55.000 0.00 1.08 32.60 3.53
891 935 0.553862 ATTGGGGGTACATGGGTCCA 60.554 55.000 0.00 0.00 0.00 4.02
892 936 0.106217 CATTGGGGGTACATGGGTCC 60.106 60.000 0.00 0.00 0.00 4.46
893 937 0.106217 CCATTGGGGGTACATGGGTC 60.106 60.000 0.00 0.00 0.00 4.46
894 938 0.853586 ACCATTGGGGGTACATGGGT 60.854 55.000 7.78 0.00 40.07 4.51
895 939 0.106217 GACCATTGGGGGTACATGGG 60.106 60.000 7.78 0.00 42.53 4.00
896 940 0.106217 GGACCATTGGGGGTACATGG 60.106 60.000 7.78 7.45 41.76 3.66
897 941 0.628522 TGGACCATTGGGGGTACATG 59.371 55.000 7.78 0.00 46.94 3.21
898 942 3.129131 TGGACCATTGGGGGTACAT 57.871 52.632 7.78 0.00 46.94 2.29
900 944 1.552578 GTTTGGACCATTGGGGGTAC 58.447 55.000 7.78 0.00 42.53 3.34
901 945 0.038455 CGTTTGGACCATTGGGGGTA 59.962 55.000 7.78 0.00 42.53 3.69
902 946 1.228737 CGTTTGGACCATTGGGGGT 60.229 57.895 7.78 0.00 46.02 4.95
903 947 1.981853 CCGTTTGGACCATTGGGGG 60.982 63.158 7.78 0.00 42.91 5.40
904 948 2.645192 GCCGTTTGGACCATTGGGG 61.645 63.158 7.78 0.00 37.49 4.96
905 949 1.876497 CTGCCGTTTGGACCATTGGG 61.876 60.000 7.78 0.00 37.49 4.12
906 950 1.586028 CTGCCGTTTGGACCATTGG 59.414 57.895 0.00 0.00 37.49 3.16
907 951 1.586028 CCTGCCGTTTGGACCATTG 59.414 57.895 0.00 0.00 37.49 2.82
908 952 1.606313 CCCTGCCGTTTGGACCATT 60.606 57.895 0.00 0.00 37.49 3.16
909 953 2.035626 CCCTGCCGTTTGGACCAT 59.964 61.111 0.00 0.00 37.49 3.55
910 954 3.485346 GACCCTGCCGTTTGGACCA 62.485 63.158 0.00 0.00 37.49 4.02
911 955 2.671963 GACCCTGCCGTTTGGACC 60.672 66.667 0.00 0.00 37.49 4.46
912 956 1.228154 AAGACCCTGCCGTTTGGAC 60.228 57.895 0.00 0.00 37.49 4.02
913 957 1.228124 CAAGACCCTGCCGTTTGGA 60.228 57.895 0.00 0.00 37.49 3.53
914 958 2.268076 CCAAGACCCTGCCGTTTGG 61.268 63.158 0.00 0.00 38.77 3.28
915 959 2.919494 GCCAAGACCCTGCCGTTTG 61.919 63.158 0.00 0.00 0.00 2.93
951 995 2.665603 GTGCCCTCTGGTGGTCTC 59.334 66.667 0.00 0.00 0.00 3.36
952 996 2.930562 GGTGCCCTCTGGTGGTCT 60.931 66.667 0.00 0.00 0.00 3.85
962 1006 2.123033 GTGGGGTTTTGGTGCCCT 60.123 61.111 0.00 0.00 44.25 5.19
1011 1060 3.236003 GAGAAACTGGGGCGACGGT 62.236 63.158 0.00 0.00 0.00 4.83
1019 1074 0.610687 AGGAGCGAAGAGAAACTGGG 59.389 55.000 0.00 0.00 0.00 4.45
1020 1075 1.548269 AGAGGAGCGAAGAGAAACTGG 59.452 52.381 0.00 0.00 0.00 4.00
1022 1077 1.822371 GGAGAGGAGCGAAGAGAAACT 59.178 52.381 0.00 0.00 0.00 2.66
1024 1079 2.096248 GAGGAGAGGAGCGAAGAGAAA 58.904 52.381 0.00 0.00 0.00 2.52
1025 1080 1.283613 AGAGGAGAGGAGCGAAGAGAA 59.716 52.381 0.00 0.00 0.00 2.87
1026 1081 0.916086 AGAGGAGAGGAGCGAAGAGA 59.084 55.000 0.00 0.00 0.00 3.10
1027 1082 1.308998 GAGAGGAGAGGAGCGAAGAG 58.691 60.000 0.00 0.00 0.00 2.85
1028 1083 0.106918 GGAGAGGAGAGGAGCGAAGA 60.107 60.000 0.00 0.00 0.00 2.87
1029 1084 1.444119 CGGAGAGGAGAGGAGCGAAG 61.444 65.000 0.00 0.00 0.00 3.79
1030 1085 1.452289 CGGAGAGGAGAGGAGCGAA 60.452 63.158 0.00 0.00 0.00 4.70
1031 1086 2.190843 CGGAGAGGAGAGGAGCGA 59.809 66.667 0.00 0.00 0.00 4.93
1032 1087 2.124487 ACGGAGAGGAGAGGAGCG 60.124 66.667 0.00 0.00 0.00 5.03
1033 1088 0.818040 GAGACGGAGAGGAGAGGAGC 60.818 65.000 0.00 0.00 0.00 4.70
1048 1103 2.373502 CCTAGGATGGATTTGGGGAGAC 59.626 54.545 1.05 0.00 0.00 3.36
1055 1126 7.147897 GGAAAGTAAAACCCTAGGATGGATTTG 60.148 40.741 11.48 0.00 0.00 2.32
1056 1127 6.895756 GGAAAGTAAAACCCTAGGATGGATTT 59.104 38.462 11.48 3.76 0.00 2.17
1057 1128 6.432581 GGAAAGTAAAACCCTAGGATGGATT 58.567 40.000 11.48 0.53 0.00 3.01
1058 1129 5.103643 GGGAAAGTAAAACCCTAGGATGGAT 60.104 44.000 11.48 0.00 40.39 3.41
1059 1130 4.228895 GGGAAAGTAAAACCCTAGGATGGA 59.771 45.833 11.48 0.00 40.39 3.41
1060 1131 4.533815 GGGAAAGTAAAACCCTAGGATGG 58.466 47.826 11.48 0.00 40.39 3.51
1062 1133 4.875578 GGGGAAAGTAAAACCCTAGGAT 57.124 45.455 11.48 0.00 42.86 3.24
1204 1277 3.707189 GAGGGGGAGGGGGAGGAA 61.707 72.222 0.00 0.00 0.00 3.36
1205 1278 4.761304 AGAGGGGGAGGGGGAGGA 62.761 72.222 0.00 0.00 0.00 3.71
1206 1279 4.179599 GAGAGGGGGAGGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1207 1280 4.179599 GGAGAGGGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1210 1283 2.916553 AAATCGGAGAGGGGGAGGGG 62.917 65.000 0.00 0.00 43.63 4.79
1211 1284 1.384643 AAATCGGAGAGGGGGAGGG 60.385 63.158 0.00 0.00 43.63 4.30
1212 1285 1.700042 CCAAATCGGAGAGGGGGAGG 61.700 65.000 0.00 0.00 43.63 4.30
1244 1371 2.736400 GCATGGGAGGCGAAGATTTTTG 60.736 50.000 0.00 0.00 0.00 2.44
1418 1615 0.110192 CCTGCTTCTCCGCGAAAAAC 60.110 55.000 8.23 0.00 0.00 2.43
1453 1668 2.830704 CTACCACGGCGGAGGTTCAC 62.831 65.000 26.91 0.00 38.21 3.18
1486 1701 3.496884 TCCGCACAAGAATAGTGAAACAC 59.503 43.478 0.00 0.00 41.43 3.32
1488 1703 4.742438 TTCCGCACAAGAATAGTGAAAC 57.258 40.909 0.00 0.00 39.30 2.78
1496 1711 1.135689 GCACGAATTCCGCACAAGAAT 60.136 47.619 9.13 0.00 43.32 2.40
1519 1734 0.734942 TCGTAGCCGCACAAGTAAGC 60.735 55.000 0.00 0.00 0.00 3.09
1520 1735 1.269166 CTCGTAGCCGCACAAGTAAG 58.731 55.000 0.00 0.00 0.00 2.34
1521 1736 0.599558 ACTCGTAGCCGCACAAGTAA 59.400 50.000 0.00 0.00 0.00 2.24
1522 1737 0.599558 AACTCGTAGCCGCACAAGTA 59.400 50.000 0.00 0.00 0.00 2.24
1565 1780 8.706322 AAACAACAAAGACCAAAGGATATACT 57.294 30.769 0.00 0.00 0.00 2.12
1568 1783 8.585018 CCTAAAACAACAAAGACCAAAGGATAT 58.415 33.333 0.00 0.00 0.00 1.63
1569 1784 7.470841 GCCTAAAACAACAAAGACCAAAGGATA 60.471 37.037 0.00 0.00 0.00 2.59
1594 1828 0.385390 CAAGTCACAACCCACAAGGC 59.615 55.000 0.00 0.00 40.58 4.35
1596 1830 3.056891 ACAAACAAGTCACAACCCACAAG 60.057 43.478 0.00 0.00 0.00 3.16
1679 1927 1.958579 ACAAAGCAGCAGCATTTCAGA 59.041 42.857 3.17 0.00 45.49 3.27
1690 1938 1.129437 GGATCGACAAGACAAAGCAGC 59.871 52.381 0.00 0.00 0.00 5.25
1709 1964 7.160726 TGGCTTAAAATTCCTTTCAGATTTGG 58.839 34.615 0.00 0.00 0.00 3.28
1733 1989 4.458397 AGGTGACTGATTTATCCATGCTG 58.542 43.478 0.00 0.00 41.13 4.41
1900 2191 2.551032 TCTGCATTGACAACAGAAGCTG 59.449 45.455 6.13 0.00 37.49 4.24
2091 2450 2.039613 GGATATGCAGAGGAGGGGAAAG 59.960 54.545 0.00 0.00 0.00 2.62
2132 2492 7.493320 TGAACGTCAAAGTATTAAACACTCAGT 59.507 33.333 0.00 0.00 0.00 3.41
2135 2495 8.333186 ACTTGAACGTCAAAGTATTAAACACTC 58.667 33.333 12.68 0.00 35.73 3.51
2348 2714 7.229506 GGAACTTAGAAGGCAGCATTACAATAT 59.770 37.037 0.00 0.00 0.00 1.28
2392 2759 4.164843 TGGGTATGGGCAATAACTTCTC 57.835 45.455 0.00 0.00 0.00 2.87
2393 2760 4.601406 TTGGGTATGGGCAATAACTTCT 57.399 40.909 0.00 0.00 0.00 2.85
2533 2913 7.652507 GTGAACCAATATAGGTAAGTACAGAGC 59.347 40.741 0.00 0.00 42.25 4.09
2550 2933 4.792068 TCTTCAGGTCAAAGTGAACCAAT 58.208 39.130 0.00 0.00 33.71 3.16
2682 3080 8.718102 TCAGTACAGAACTAAATAATTCAGGC 57.282 34.615 0.00 0.00 35.76 4.85
2697 3095 0.685097 GGTGCCACCTCAGTACAGAA 59.315 55.000 6.63 0.00 34.73 3.02
2827 3414 5.414454 TGCATTGAAATGGTTCACCTAGTAC 59.586 40.000 5.25 0.00 43.52 2.73
2904 3499 7.509659 ACAAGATATACCTCTTAGGGTAAGGTG 59.490 40.741 3.58 1.57 43.92 4.00
2944 3552 5.812642 AGCCTTCTTGTTACACATTATCGAG 59.187 40.000 0.00 0.00 0.00 4.04
3014 3623 5.451908 CAAGTGTGACATTCATACAACACC 58.548 41.667 5.94 0.00 40.39 4.16
3030 3647 7.095910 TGTAATAATTGGAAATGGCAAGTGTG 58.904 34.615 0.00 0.00 0.00 3.82
3085 3703 5.049405 CACAAGACCAGAATTCTACAACACC 60.049 44.000 7.86 0.00 0.00 4.16
3086 3704 5.560953 GCACAAGACCAGAATTCTACAACAC 60.561 44.000 7.86 0.00 0.00 3.32
3087 3705 4.515191 GCACAAGACCAGAATTCTACAACA 59.485 41.667 7.86 0.00 0.00 3.33
3133 3754 1.571460 CCAGAAAGCACAGACGCAC 59.429 57.895 0.00 0.00 0.00 5.34
4005 4662 6.054941 TCTCAAAATCTCACAGTTGCTGTAA 58.945 36.000 1.16 0.00 43.43 2.41
4012 4669 8.302438 GGAAATTCATCTCAAAATCTCACAGTT 58.698 33.333 0.00 0.00 0.00 3.16
4328 4985 8.896320 AATTTGGTAGAAATTTTGTTACCCAC 57.104 30.769 17.66 0.00 35.72 4.61
4495 5159 0.687354 ACCGAACCAGCAGAAGACAT 59.313 50.000 0.00 0.00 0.00 3.06
4513 5177 1.428448 GCAAGAAAAATGGGCGGAAC 58.572 50.000 0.00 0.00 0.00 3.62
4524 5188 0.476771 AGAGGGAACGGGCAAGAAAA 59.523 50.000 0.00 0.00 0.00 2.29
4535 5199 1.550976 AGACGAATGGACAGAGGGAAC 59.449 52.381 0.00 0.00 0.00 3.62
4609 5318 3.318384 TGCCGCTCCTAGCCAACA 61.318 61.111 0.00 0.00 38.18 3.33
4645 5354 1.768275 ACCCATAGGACGATGCATCAA 59.232 47.619 25.70 6.35 36.73 2.57
4729 5581 1.392589 AGGGTTTATGCGCATTCAGG 58.607 50.000 30.42 0.00 0.00 3.86
4849 5701 5.453339 GCCAGATAGCCACATACAGAAACTA 60.453 44.000 0.00 0.00 0.00 2.24
4869 5721 4.589908 AGTTAAAACCACTCCATAGCCAG 58.410 43.478 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.