Multiple sequence alignment - TraesCS3B01G517100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G517100 chr3B 100.000 7994 0 0 1 7994 760130354 760138347 0.000000e+00 14763.0
1 TraesCS3B01G517100 chr3B 89.247 2111 192 26 5156 7253 760161256 760163344 0.000000e+00 2608.0
2 TraesCS3B01G517100 chr3B 95.194 1394 55 11 5924 7312 760184787 760186173 0.000000e+00 2193.0
3 TraesCS3B01G517100 chr3B 90.098 1333 116 13 5924 7253 760292514 760293833 0.000000e+00 1716.0
4 TraesCS3B01G517100 chr3B 88.053 1197 107 16 4741 5930 760286173 760287340 0.000000e+00 1386.0
5 TraesCS3B01G517100 chr3B 93.237 621 38 3 5937 6555 760221887 760222505 0.000000e+00 911.0
6 TraesCS3B01G517100 chr3B 92.467 531 34 3 7470 7994 760230582 760231112 0.000000e+00 754.0
7 TraesCS3B01G517100 chr3B 91.667 420 33 2 4741 5159 760160665 760161083 1.500000e-161 580.0
8 TraesCS3B01G517100 chr3B 82.201 427 56 18 7506 7919 176615905 176615486 4.590000e-92 350.0
9 TraesCS3B01G517100 chr3B 87.500 296 14 1 7171 7466 760230440 760230712 3.600000e-83 320.0
10 TraesCS3B01G517100 chr3B 93.467 199 13 0 5744 5942 760216155 760216353 6.070000e-76 296.0
11 TraesCS3B01G517100 chr3B 93.143 175 11 1 7079 7253 760188804 760188977 1.030000e-63 255.0
12 TraesCS3B01G517100 chr3B 78.286 175 25 12 7809 7978 759570523 759570357 5.100000e-17 100.0
13 TraesCS3B01G517100 chr3B 95.238 63 2 1 7250 7312 760222504 760222565 1.840000e-16 99.0
14 TraesCS3B01G517100 chrUn 90.795 7333 436 123 4 7247 33089454 33082272 0.000000e+00 9581.0
15 TraesCS3B01G517100 chrUn 89.474 665 38 10 7359 7994 33080472 33079811 0.000000e+00 811.0
16 TraesCS3B01G517100 chrUn 93.548 155 10 0 7313 7467 33080361 33080207 1.730000e-56 231.0
17 TraesCS3B01G517100 chr3A 92.144 5728 344 55 2296 7994 704969916 704975566 0.000000e+00 7987.0
18 TraesCS3B01G517100 chr3A 89.662 1451 73 29 895 2318 704966166 704967566 0.000000e+00 1777.0
19 TraesCS3B01G517100 chr3A 90.909 594 48 4 4741 5333 705021526 705022114 0.000000e+00 793.0
20 TraesCS3B01G517100 chr3A 81.625 283 47 4 1 278 704965374 704965656 6.240000e-56 230.0
21 TraesCS3B01G517100 chr3A 96.471 85 3 0 7313 7397 704975030 704975114 3.010000e-29 141.0
22 TraesCS3B01G517100 chr3A 81.481 189 14 11 707 882 704965778 704965958 1.400000e-27 135.0
23 TraesCS3B01G517100 chr2A 84.493 503 58 16 7506 7994 459441959 459441463 5.610000e-131 479.0
24 TraesCS3B01G517100 chr2A 83.702 497 60 17 7512 7994 459445053 459444564 4.400000e-122 449.0
25 TraesCS3B01G517100 chr2A 82.169 415 46 18 7506 7899 459505826 459505419 1.660000e-86 331.0
26 TraesCS3B01G517100 chr2A 91.667 96 8 0 7372 7467 459441959 459441864 5.030000e-27 134.0
27 TraesCS3B01G517100 chr2A 91.667 96 8 0 7372 7467 459505826 459505731 5.030000e-27 134.0
28 TraesCS3B01G517100 chr5D 81.782 505 51 18 7521 7994 32615297 32614803 1.260000e-102 385.0
29 TraesCS3B01G517100 chr5D 76.733 202 31 14 7798 7992 119379610 119379418 1.840000e-16 99.0
30 TraesCS3B01G517100 chr1B 82.185 421 58 16 7506 7915 641687259 641686845 5.940000e-91 346.0
31 TraesCS3B01G517100 chr1B 79.279 333 60 8 4301 4628 438699435 438699763 2.900000e-54 224.0
32 TraesCS3B01G517100 chr1B 80.242 248 49 0 5725 5972 438700842 438701089 3.810000e-43 187.0
33 TraesCS3B01G517100 chr1D 77.151 337 63 11 4301 4628 325681701 325682032 4.930000e-42 183.0
34 TraesCS3B01G517100 chr1D 76.699 206 25 19 7799 7994 21309802 21309610 8.540000e-15 93.5
35 TraesCS3B01G517100 chr1A 75.510 343 70 11 4301 4634 418043678 418043341 1.070000e-33 156.0
36 TraesCS3B01G517100 chr7A 89.583 96 10 0 7374 7469 546658732 546658637 1.090000e-23 122.0
37 TraesCS3B01G517100 chr7B 95.522 67 3 0 7372 7438 666559212 666559278 3.050000e-19 108.0
38 TraesCS3B01G517100 chr7B 95.522 67 3 0 7372 7438 666560595 666560661 3.050000e-19 108.0
39 TraesCS3B01G517100 chr7B 92.537 67 5 0 7506 7572 666559212 666559278 6.600000e-16 97.1
40 TraesCS3B01G517100 chr7B 92.537 67 5 0 7506 7572 666560595 666560661 6.600000e-16 97.1
41 TraesCS3B01G517100 chr5B 76.884 199 34 12 7799 7994 289020660 289020471 1.420000e-17 102.0
42 TraesCS3B01G517100 chr4B 78.107 169 22 15 7817 7978 613738129 613737969 8.540000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G517100 chr3B 760130354 760138347 7993 False 14763.0 14763 100.000000 1 7994 1 chr3B.!!$F1 7993
1 TraesCS3B01G517100 chr3B 760292514 760293833 1319 False 1716.0 1716 90.098000 5924 7253 1 chr3B.!!$F4 1329
2 TraesCS3B01G517100 chr3B 760160665 760163344 2679 False 1594.0 2608 90.457000 4741 7253 2 chr3B.!!$F5 2512
3 TraesCS3B01G517100 chr3B 760286173 760287340 1167 False 1386.0 1386 88.053000 4741 5930 1 chr3B.!!$F3 1189
4 TraesCS3B01G517100 chr3B 760184787 760188977 4190 False 1224.0 2193 94.168500 5924 7312 2 chr3B.!!$F6 1388
5 TraesCS3B01G517100 chr3B 760230440 760231112 672 False 537.0 754 89.983500 7171 7994 2 chr3B.!!$F8 823
6 TraesCS3B01G517100 chr3B 760221887 760222565 678 False 505.0 911 94.237500 5937 7312 2 chr3B.!!$F7 1375
7 TraesCS3B01G517100 chrUn 33079811 33089454 9643 True 3541.0 9581 91.272333 4 7994 3 chrUn.!!$R1 7990
8 TraesCS3B01G517100 chr3A 704965374 704975566 10192 False 2054.0 7987 88.276600 1 7994 5 chr3A.!!$F2 7993
9 TraesCS3B01G517100 chr3A 705021526 705022114 588 False 793.0 793 90.909000 4741 5333 1 chr3A.!!$F1 592
10 TraesCS3B01G517100 chr2A 459441463 459445053 3590 True 354.0 479 86.620667 7372 7994 3 chr2A.!!$R1 622
11 TraesCS3B01G517100 chr1B 438699435 438701089 1654 False 205.5 224 79.760500 4301 5972 2 chr1B.!!$F1 1671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 407 0.533978 TGCCGCACTAGCTGTCAAAA 60.534 50.0 0.0 0.0 39.1 2.44 F
1700 1966 0.098728 CCGCTGGAATTTTAGGCACG 59.901 55.0 0.0 0.0 0.0 5.34 F
2150 2430 0.321122 GCTTCCTCATATGCCCCTCG 60.321 60.0 0.0 0.0 0.0 4.63 F
2912 5579 0.032403 CGTAACCTGTGGGACGTTGA 59.968 55.0 0.0 0.0 33.5 3.18 F
4105 6792 0.106769 TGTTGCTGCTTCCCTTGACA 60.107 50.0 0.0 0.0 0.0 3.58 F
5163 8269 0.037303 CAGAGAAGGAAAGGCAGGCA 59.963 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2043 0.247460 GCTTCCAATCCAAACAGGGC 59.753 55.000 0.00 0.00 38.24 5.19 R
2893 5560 0.032403 TCAACGTCCCACAGGTTACG 59.968 55.000 0.00 6.63 36.62 3.18 R
3253 5927 0.034059 GGTGTGTCACAGAGGGACAG 59.966 60.000 5.74 0.00 45.21 3.51 R
4131 6818 0.103572 GGACTCGCCGCCTGTATTAA 59.896 55.000 0.00 0.00 0.00 1.40 R
6029 9281 0.179468 GCCATTGCTACGGGGACTAA 59.821 55.000 0.00 0.00 33.53 2.24 R
7074 10354 1.005097 AGAGCCATTTGCCATGAGACA 59.995 47.619 0.00 0.00 42.71 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.998454 ATGATCGAATTTCAGGCTTACAG 57.002 39.130 0.00 0.00 0.00 2.74
48 49 1.041437 GGCTTACAGTCCTAGGCGAT 58.959 55.000 2.96 0.00 0.00 4.58
76 77 3.094484 TCAAAACGGCTGGGGATTAAT 57.906 42.857 0.00 0.00 0.00 1.40
78 79 1.775385 AAACGGCTGGGGATTAATGG 58.225 50.000 0.00 0.00 0.00 3.16
86 87 3.298619 CTGGGGATTAATGGCAATGTCA 58.701 45.455 0.00 0.00 0.00 3.58
95 96 8.819974 GGATTAATGGCAATGTCACAATAAAAG 58.180 33.333 0.00 0.00 0.00 2.27
99 100 4.020396 TGGCAATGTCACAATAAAAGCCAT 60.020 37.500 0.00 0.00 43.93 4.40
106 107 7.459795 TGTCACAATAAAAGCCATCACATAA 57.540 32.000 0.00 0.00 0.00 1.90
117 118 5.723295 AGCCATCACATAAAAACAATCCAC 58.277 37.500 0.00 0.00 0.00 4.02
133 134 7.872061 ACAATCCACCATATGTATTCCTCTA 57.128 36.000 1.24 0.00 0.00 2.43
140 141 5.307196 ACCATATGTATTCCTCTACCACACC 59.693 44.000 1.24 0.00 0.00 4.16
142 143 6.183361 CCATATGTATTCCTCTACCACACCAA 60.183 42.308 1.24 0.00 0.00 3.67
143 144 5.975988 ATGTATTCCTCTACCACACCAAT 57.024 39.130 0.00 0.00 0.00 3.16
144 145 5.772393 TGTATTCCTCTACCACACCAATT 57.228 39.130 0.00 0.00 0.00 2.32
162 165 2.885135 TTGTCATGGTGATGCCTTCT 57.115 45.000 0.00 0.00 38.35 2.85
176 179 1.613925 GCCTTCTTCTTTGGGGTGTTC 59.386 52.381 0.00 0.00 0.00 3.18
193 196 2.435410 CCGGGCCGTAACCTTGTC 60.435 66.667 26.32 0.00 0.00 3.18
202 205 2.489329 CCGTAACCTTGTCGACTTCCTA 59.511 50.000 17.92 0.00 0.00 2.94
204 207 4.381292 CCGTAACCTTGTCGACTTCCTAAT 60.381 45.833 17.92 0.00 0.00 1.73
205 208 4.797349 CGTAACCTTGTCGACTTCCTAATC 59.203 45.833 17.92 0.95 0.00 1.75
217 220 6.430308 TCGACTTCCTAATCGCTAGATACAAT 59.570 38.462 0.00 0.00 38.24 2.71
229 232 4.275936 GCTAGATACAATGTTTGGCCGATT 59.724 41.667 0.00 0.00 34.12 3.34
247 250 1.999648 TTTCAGCACCAAAGAGGCAT 58.000 45.000 0.00 0.00 43.14 4.40
265 268 3.813596 GCCATCGGCTCGTCAAAT 58.186 55.556 0.00 0.00 46.69 2.32
267 270 1.927210 CCATCGGCTCGTCAAATCG 59.073 57.895 0.00 0.00 0.00 3.34
291 294 0.774096 TGACCAAGGATCCCCAACCA 60.774 55.000 8.55 0.00 33.88 3.67
308 311 5.469760 CCCAACCAAGGATTGTGAAAATTTC 59.530 40.000 0.00 0.00 46.99 2.17
313 316 7.984391 ACCAAGGATTGTGAAAATTTCAAAAC 58.016 30.769 13.00 7.75 46.99 2.43
314 317 7.125113 CCAAGGATTGTGAAAATTTCAAAACG 58.875 34.615 13.00 1.50 46.99 3.60
315 318 6.843069 AGGATTGTGAAAATTTCAAAACGG 57.157 33.333 13.00 0.00 39.56 4.44
316 319 5.236263 AGGATTGTGAAAATTTCAAAACGGC 59.764 36.000 13.00 6.48 39.56 5.68
318 321 2.860735 TGTGAAAATTTCAAAACGGCCG 59.139 40.909 26.86 26.86 42.15 6.13
324 328 1.245376 TTTCAAAACGGCCGGGGATC 61.245 55.000 31.76 0.00 0.00 3.36
330 334 4.235762 CGGCCGGGGATCAACGAT 62.236 66.667 20.10 0.00 0.00 3.73
336 340 2.413837 CCGGGGATCAACGATAATGTC 58.586 52.381 9.51 0.00 0.00 3.06
337 341 2.224185 CCGGGGATCAACGATAATGTCA 60.224 50.000 9.51 0.00 0.00 3.58
338 342 3.557054 CCGGGGATCAACGATAATGTCAT 60.557 47.826 9.51 0.00 0.00 3.06
350 354 8.678510 CAACGATAATGTCATAATAAAAACCGC 58.321 33.333 0.00 0.00 0.00 5.68
376 381 5.746245 ACACAAAAACAATCCAACATACGTG 59.254 36.000 0.00 0.00 0.00 4.49
384 389 3.313012 TCCAACATACGTGTTCCTCTG 57.687 47.619 0.00 0.00 45.14 3.35
391 396 2.031163 GTGTTCCTCTGCCGCACT 59.969 61.111 0.00 0.00 0.00 4.40
400 405 1.374631 CTGCCGCACTAGCTGTCAA 60.375 57.895 0.00 0.00 39.10 3.18
402 407 0.533978 TGCCGCACTAGCTGTCAAAA 60.534 50.000 0.00 0.00 39.10 2.44
453 458 1.737008 GCAACCTCGACGACTTCCC 60.737 63.158 0.00 0.00 0.00 3.97
471 476 1.740285 CGGCCGCTAGATACAAGGT 59.260 57.895 14.67 0.00 0.00 3.50
548 553 3.622826 ACGTGACCAAGGACCCCG 61.623 66.667 0.00 0.00 0.00 5.73
550 555 2.663196 GTGACCAAGGACCCCGAG 59.337 66.667 0.00 0.00 0.00 4.63
561 566 1.609794 ACCCCGAGGTCCTTCTCAC 60.610 63.158 0.00 0.00 46.45 3.51
562 567 1.609501 CCCCGAGGTCCTTCTCACA 60.610 63.158 0.00 0.00 33.59 3.58
563 568 1.608717 CCCCGAGGTCCTTCTCACAG 61.609 65.000 0.00 0.00 33.59 3.66
568 573 2.610727 CGAGGTCCTTCTCACAGTTTCC 60.611 54.545 0.00 0.00 33.59 3.13
573 578 3.247886 GTCCTTCTCACAGTTTCCGTTTC 59.752 47.826 0.00 0.00 0.00 2.78
575 580 3.495001 CCTTCTCACAGTTTCCGTTTCTC 59.505 47.826 0.00 0.00 0.00 2.87
576 581 4.372656 CTTCTCACAGTTTCCGTTTCTCT 58.627 43.478 0.00 0.00 0.00 3.10
577 582 3.978687 TCTCACAGTTTCCGTTTCTCTC 58.021 45.455 0.00 0.00 0.00 3.20
582 587 0.672711 GTTTCCGTTTCTCTCGGGGG 60.673 60.000 4.58 0.00 46.82 5.40
583 588 2.459202 TTTCCGTTTCTCTCGGGGGC 62.459 60.000 4.58 0.00 46.82 5.80
584 589 3.702048 CCGTTTCTCTCGGGGGCA 61.702 66.667 0.00 0.00 43.68 5.36
585 590 2.434359 CGTTTCTCTCGGGGGCAC 60.434 66.667 0.00 0.00 0.00 5.01
586 591 2.434359 GTTTCTCTCGGGGGCACG 60.434 66.667 0.00 0.00 0.00 5.34
608 613 6.019479 CACGCCACAGTTTCTAGATCTATTTC 60.019 42.308 2.11 0.00 0.00 2.17
614 619 8.341173 CACAGTTTCTAGATCTATTTCAATGCC 58.659 37.037 2.11 0.00 0.00 4.40
620 625 1.581934 TCTATTTCAATGCCGAGCCG 58.418 50.000 0.00 0.00 0.00 5.52
648 660 5.107298 GCTCTCTTCACACACTCACAAATAC 60.107 44.000 0.00 0.00 0.00 1.89
651 663 7.145985 TCTCTTCACACACTCACAAATACTAC 58.854 38.462 0.00 0.00 0.00 2.73
654 666 7.931407 TCTTCACACACTCACAAATACTACAAT 59.069 33.333 0.00 0.00 0.00 2.71
668 680 9.793252 CAAATACTACAATGGAAATGGAAAGAG 57.207 33.333 0.00 0.00 0.00 2.85
677 690 9.709495 CAATGGAAATGGAAAGAGAACAAATTA 57.291 29.630 0.00 0.00 0.00 1.40
684 697 9.725019 AATGGAAAGAGAACAAATTAATTTCCC 57.275 29.630 10.53 3.57 42.17 3.97
685 698 7.676004 TGGAAAGAGAACAAATTAATTTCCCC 58.324 34.615 10.53 3.25 42.17 4.81
686 699 7.291182 TGGAAAGAGAACAAATTAATTTCCCCA 59.709 33.333 10.53 5.20 42.17 4.96
687 700 8.154203 GGAAAGAGAACAAATTAATTTCCCCAA 58.846 33.333 10.53 0.00 38.71 4.12
688 701 8.902540 AAAGAGAACAAATTAATTTCCCCAAC 57.097 30.769 10.53 2.39 0.00 3.77
689 702 7.610580 AGAGAACAAATTAATTTCCCCAACA 57.389 32.000 10.53 0.00 0.00 3.33
690 703 8.028652 AGAGAACAAATTAATTTCCCCAACAA 57.971 30.769 10.53 0.00 0.00 2.83
691 704 8.490311 AGAGAACAAATTAATTTCCCCAACAAA 58.510 29.630 10.53 0.00 0.00 2.83
692 705 9.283768 GAGAACAAATTAATTTCCCCAACAAAT 57.716 29.630 10.53 0.00 0.00 2.32
693 706 9.283768 AGAACAAATTAATTTCCCCAACAAATC 57.716 29.630 10.53 0.00 0.00 2.17
694 707 9.283768 GAACAAATTAATTTCCCCAACAAATCT 57.716 29.630 10.53 0.00 0.00 2.40
695 708 9.639563 AACAAATTAATTTCCCCAACAAATCTT 57.360 25.926 10.53 0.00 0.00 2.40
696 709 9.639563 ACAAATTAATTTCCCCAACAAATCTTT 57.360 25.926 10.53 0.00 0.00 2.52
699 712 9.859152 AATTAATTTCCCCAACAAATCTTTTGA 57.141 25.926 6.96 0.00 0.00 2.69
700 713 9.859152 ATTAATTTCCCCAACAAATCTTTTGAA 57.141 25.926 6.96 0.00 0.00 2.69
701 714 7.566760 AATTTCCCCAACAAATCTTTTGAAC 57.433 32.000 6.96 0.00 0.00 3.18
702 715 4.681074 TCCCCAACAAATCTTTTGAACC 57.319 40.909 6.96 0.00 0.00 3.62
703 716 4.294347 TCCCCAACAAATCTTTTGAACCT 58.706 39.130 6.96 0.00 0.00 3.50
704 717 4.719273 TCCCCAACAAATCTTTTGAACCTT 59.281 37.500 6.96 0.00 0.00 3.50
705 718 5.056480 CCCCAACAAATCTTTTGAACCTTC 58.944 41.667 6.96 0.00 0.00 3.46
770 783 6.826741 AGGTGCAAGAAAACCGTTGTATATAT 59.173 34.615 0.00 0.00 41.61 0.86
771 784 7.988599 AGGTGCAAGAAAACCGTTGTATATATA 59.011 33.333 0.00 0.00 41.61 0.86
772 785 8.280497 GGTGCAAGAAAACCGTTGTATATATAG 58.720 37.037 0.00 0.00 0.00 1.31
773 786 7.797123 GTGCAAGAAAACCGTTGTATATATAGC 59.203 37.037 0.00 0.00 0.00 2.97
774 787 7.496263 TGCAAGAAAACCGTTGTATATATAGCA 59.504 33.333 0.00 0.00 0.00 3.49
775 788 8.339714 GCAAGAAAACCGTTGTATATATAGCAA 58.660 33.333 0.00 0.00 0.00 3.91
779 792 9.991388 GAAAACCGTTGTATATATAGCAAAACA 57.009 29.630 8.43 0.00 0.00 2.83
783 796 9.997482 ACCGTTGTATATATAGCAAAACAAAAG 57.003 29.630 8.43 2.94 0.00 2.27
824 856 1.349357 GAAACCCAACTGCTCTCTCCT 59.651 52.381 0.00 0.00 0.00 3.69
825 857 2.327325 AACCCAACTGCTCTCTCCTA 57.673 50.000 0.00 0.00 0.00 2.94
864 897 1.448540 ATACTCACACTGGCGCTGC 60.449 57.895 7.64 0.00 0.00 5.25
878 911 1.207593 GCTGCCTACAACTGCAACG 59.792 57.895 0.00 0.00 36.98 4.10
880 913 1.225855 CTGCCTACAACTGCAACGAA 58.774 50.000 0.00 0.00 36.98 3.85
881 914 0.941542 TGCCTACAACTGCAACGAAC 59.058 50.000 0.00 0.00 33.87 3.95
927 1155 4.510711 TGCCATTGCCAATTATTAATTGCG 59.489 37.500 19.41 14.62 45.36 4.85
1019 1256 7.176741 CCAGAAAAACAAACCAACAAAATACG 58.823 34.615 0.00 0.00 0.00 3.06
1270 1535 2.700773 GGCCGCCATGTTCAAGGAC 61.701 63.158 3.91 0.00 0.00 3.85
1273 1538 1.635663 CCGCCATGTTCAAGGACGTC 61.636 60.000 7.13 7.13 0.00 4.34
1459 1725 5.501736 GCGCCAAAAGTTTTCGAATCTTTTT 60.502 36.000 25.19 17.19 38.70 1.94
1552 1818 0.322546 AGGTCCTCGAATTTGTGGCC 60.323 55.000 8.69 12.14 0.00 5.36
1564 1830 0.833949 TTGTGGCCTTTTTGGGTTCC 59.166 50.000 3.32 0.00 36.00 3.62
1595 1861 2.413765 GTGGGAGATCTCGCGTCC 59.586 66.667 28.48 18.80 44.39 4.79
1597 1863 2.413765 GGGAGATCTCGCGTCCAC 59.586 66.667 22.35 4.35 32.91 4.02
1600 1866 1.357334 GAGATCTCGCGTCCACTCC 59.643 63.158 7.04 0.00 0.00 3.85
1601 1867 2.065906 GAGATCTCGCGTCCACTCCC 62.066 65.000 7.04 0.00 0.00 4.30
1690 1956 2.185350 CTCGAGTGCCGCTGGAAT 59.815 61.111 3.62 0.00 38.37 3.01
1694 1960 1.083489 CGAGTGCCGCTGGAATTTTA 58.917 50.000 0.00 0.00 0.00 1.52
1696 1962 1.401905 GAGTGCCGCTGGAATTTTAGG 59.598 52.381 0.00 0.00 0.00 2.69
1698 1964 2.188912 GCCGCTGGAATTTTAGGCA 58.811 52.632 0.00 0.00 43.65 4.75
1699 1965 0.179137 GCCGCTGGAATTTTAGGCAC 60.179 55.000 0.00 0.00 43.65 5.01
1700 1966 0.098728 CCGCTGGAATTTTAGGCACG 59.901 55.000 0.00 0.00 0.00 5.34
1701 1967 0.098728 CGCTGGAATTTTAGGCACGG 59.901 55.000 0.00 0.00 0.00 4.94
1702 1968 1.173913 GCTGGAATTTTAGGCACGGT 58.826 50.000 0.00 0.00 0.00 4.83
1706 1972 3.752665 TGGAATTTTAGGCACGGTGTTA 58.247 40.909 10.24 0.43 0.00 2.41
1710 1976 6.433404 TGGAATTTTAGGCACGGTGTTAAATA 59.567 34.615 10.24 7.10 0.00 1.40
1801 2073 2.428171 GGATTGGAAGCAATGCAGCTAA 59.572 45.455 8.35 3.22 45.89 3.09
1884 2156 5.822519 TCAAGCTCCAAATTAAGTGCGATAT 59.177 36.000 0.00 0.00 0.00 1.63
1886 2158 7.661437 TCAAGCTCCAAATTAAGTGCGATATAT 59.339 33.333 0.00 0.00 0.00 0.86
1887 2159 7.602517 AGCTCCAAATTAAGTGCGATATATC 57.397 36.000 2.34 2.34 0.00 1.63
1888 2160 7.161404 AGCTCCAAATTAAGTGCGATATATCA 58.839 34.615 13.11 0.00 0.00 2.15
1889 2161 7.826252 AGCTCCAAATTAAGTGCGATATATCAT 59.174 33.333 13.11 0.00 0.00 2.45
1890 2162 8.119226 GCTCCAAATTAAGTGCGATATATCATC 58.881 37.037 13.11 4.56 0.00 2.92
1891 2163 9.154847 CTCCAAATTAAGTGCGATATATCATCA 57.845 33.333 13.11 7.00 0.00 3.07
1892 2164 9.154847 TCCAAATTAAGTGCGATATATCATCAG 57.845 33.333 13.11 0.00 0.00 2.90
1893 2165 8.939929 CCAAATTAAGTGCGATATATCATCAGT 58.060 33.333 13.11 9.37 0.00 3.41
1894 2166 9.750882 CAAATTAAGTGCGATATATCATCAGTG 57.249 33.333 13.11 0.00 0.00 3.66
1895 2167 9.494271 AAATTAAGTGCGATATATCATCAGTGT 57.506 29.630 13.11 6.62 0.00 3.55
2051 2331 2.979197 CTTCAGCACTGCAGCCTGC 61.979 63.158 23.25 21.26 45.29 4.85
2057 2337 2.046507 ACTGCAGCCTGCTACAGC 60.047 61.111 18.96 6.19 45.31 4.40
2150 2430 0.321122 GCTTCCTCATATGCCCCTCG 60.321 60.000 0.00 0.00 0.00 4.63
2253 2534 0.796312 ATCAGTGTGCTTTTACGCCG 59.204 50.000 0.00 0.00 0.00 6.46
2310 2591 0.739813 CGTTAGCTCTTTCCGGGTGG 60.740 60.000 0.00 0.00 0.00 4.61
2311 2592 0.323957 GTTAGCTCTTTCCGGGTGGT 59.676 55.000 0.00 0.00 36.30 4.16
2312 2593 0.323629 TTAGCTCTTTCCGGGTGGTG 59.676 55.000 0.00 0.00 36.30 4.17
2314 2595 1.072505 GCTCTTTCCGGGTGGTGAA 59.927 57.895 0.00 0.00 36.30 3.18
2315 2596 0.322546 GCTCTTTCCGGGTGGTGAAT 60.323 55.000 0.00 0.00 36.30 2.57
2358 5011 2.112998 CATGATTTGGTTGGCAGGGAT 58.887 47.619 0.00 0.00 0.00 3.85
2412 5065 4.280929 ACTCTAAAAATCTTTGTGGGGCAC 59.719 41.667 0.00 0.00 34.56 5.01
2425 5079 0.897621 GGGGCACTCTGGGAAAATTG 59.102 55.000 0.00 0.00 0.00 2.32
2427 5081 2.460669 GGGCACTCTGGGAAAATTGAT 58.539 47.619 0.00 0.00 0.00 2.57
2428 5082 3.627237 GGGGCACTCTGGGAAAATTGATA 60.627 47.826 0.00 0.00 0.00 2.15
2526 5180 4.004982 GGATAACCGTTTTTAGTCTGCCA 58.995 43.478 0.00 0.00 0.00 4.92
2527 5181 4.638865 GGATAACCGTTTTTAGTCTGCCAT 59.361 41.667 0.00 0.00 0.00 4.40
2593 5247 5.933463 TGAAATTCATGTTTCCAGAATTGGC 59.067 36.000 6.39 0.00 44.63 4.52
2597 5251 0.958091 TGTTTCCAGAATTGGCGGTG 59.042 50.000 0.00 0.00 44.63 4.94
2598 5252 0.388520 GTTTCCAGAATTGGCGGTGC 60.389 55.000 0.00 0.00 44.63 5.01
2641 5305 6.942532 TTTCTGATGTAGTCATAATTGGCC 57.057 37.500 0.00 0.00 35.97 5.36
2642 5306 5.894298 TCTGATGTAGTCATAATTGGCCT 57.106 39.130 3.32 0.00 35.97 5.19
2643 5307 5.614308 TCTGATGTAGTCATAATTGGCCTG 58.386 41.667 3.32 0.00 35.97 4.85
2644 5308 4.717877 TGATGTAGTCATAATTGGCCTGG 58.282 43.478 3.32 0.00 34.06 4.45
2665 5329 3.193479 GGTGGTTCCCTGTGAAATTCATC 59.807 47.826 0.00 0.00 33.94 2.92
2692 5356 5.652994 TCCCAGGGTTGATTTATTTTTCG 57.347 39.130 5.01 0.00 0.00 3.46
2702 5366 7.272731 GGTTGATTTATTTTTCGTAACTCCAGC 59.727 37.037 0.00 0.00 0.00 4.85
2705 5369 5.520022 TTATTTTTCGTAACTCCAGCGAC 57.480 39.130 0.00 0.00 34.21 5.19
2706 5370 2.806608 TTTTCGTAACTCCAGCGACT 57.193 45.000 0.00 0.00 34.21 4.18
2707 5371 2.806608 TTTCGTAACTCCAGCGACTT 57.193 45.000 0.00 0.00 34.21 3.01
2708 5372 2.806608 TTCGTAACTCCAGCGACTTT 57.193 45.000 0.00 0.00 34.21 2.66
2735 5402 8.905103 TTTCCTTTTTCTTATATTGCGCTTAC 57.095 30.769 9.73 0.00 0.00 2.34
2771 5438 3.692576 GCATTCTTGCTAGACAATGCAG 58.307 45.455 22.07 1.84 45.77 4.41
2785 5452 9.874215 CTAGACAATGCAGTACAAATAATCATG 57.126 33.333 0.00 0.00 0.00 3.07
2804 5471 4.641541 TCATGCTTGTAACCTTCATGGATG 59.358 41.667 0.00 0.00 38.81 3.51
2824 5491 6.440647 TGGATGTTTACTCTTGAGGACAGTAT 59.559 38.462 2.55 0.00 0.00 2.12
2884 5551 3.430453 CCAATTGTAACCTGTGGGATGT 58.570 45.455 4.43 0.00 36.25 3.06
2890 5557 3.329225 TGTAACCTGTGGGATGTTGATGA 59.671 43.478 0.00 0.00 36.25 2.92
2891 5558 3.524095 AACCTGTGGGATGTTGATGAA 57.476 42.857 0.00 0.00 36.25 2.57
2892 5559 2.795329 ACCTGTGGGATGTTGATGAAC 58.205 47.619 0.00 0.00 36.25 3.18
2893 5560 2.094675 CCTGTGGGATGTTGATGAACC 58.905 52.381 0.00 0.00 33.58 3.62
2894 5561 1.739466 CTGTGGGATGTTGATGAACCG 59.261 52.381 0.00 0.00 0.00 4.44
2895 5562 1.073125 TGTGGGATGTTGATGAACCGT 59.927 47.619 0.00 0.00 0.00 4.83
2896 5563 2.303311 TGTGGGATGTTGATGAACCGTA 59.697 45.455 0.00 0.00 0.00 4.02
2897 5564 3.244596 TGTGGGATGTTGATGAACCGTAA 60.245 43.478 0.00 0.00 0.00 3.18
2898 5565 3.126343 GTGGGATGTTGATGAACCGTAAC 59.874 47.826 0.00 0.00 0.00 2.50
2899 5566 2.681344 GGGATGTTGATGAACCGTAACC 59.319 50.000 0.00 0.00 0.00 2.85
2900 5567 3.606687 GGATGTTGATGAACCGTAACCT 58.393 45.455 0.00 0.00 0.00 3.50
2901 5568 3.374058 GGATGTTGATGAACCGTAACCTG 59.626 47.826 0.00 0.00 0.00 4.00
2902 5569 3.478857 TGTTGATGAACCGTAACCTGT 57.521 42.857 0.00 0.00 0.00 4.00
2903 5570 3.135225 TGTTGATGAACCGTAACCTGTG 58.865 45.455 0.00 0.00 0.00 3.66
2904 5571 2.465860 TGATGAACCGTAACCTGTGG 57.534 50.000 0.00 0.00 0.00 4.17
2905 5572 1.002659 TGATGAACCGTAACCTGTGGG 59.997 52.381 0.00 0.00 38.88 4.61
2906 5573 1.276989 GATGAACCGTAACCTGTGGGA 59.723 52.381 0.00 0.00 36.25 4.37
2907 5574 0.393820 TGAACCGTAACCTGTGGGAC 59.606 55.000 0.00 0.00 36.25 4.46
2908 5575 0.668401 GAACCGTAACCTGTGGGACG 60.668 60.000 6.40 6.40 36.41 4.79
2909 5576 1.402107 AACCGTAACCTGTGGGACGT 61.402 55.000 0.00 0.00 35.40 4.34
2910 5577 1.368579 CCGTAACCTGTGGGACGTT 59.631 57.895 10.73 0.00 35.40 3.99
2911 5578 0.947180 CCGTAACCTGTGGGACGTTG 60.947 60.000 10.73 0.00 35.40 4.10
2912 5579 0.032403 CGTAACCTGTGGGACGTTGA 59.968 55.000 0.00 0.00 33.50 3.18
2913 5580 1.337447 CGTAACCTGTGGGACGTTGAT 60.337 52.381 0.00 0.00 33.50 2.57
2914 5581 2.073816 GTAACCTGTGGGACGTTGATG 58.926 52.381 0.00 0.00 36.25 3.07
2917 5584 1.156736 CCTGTGGGACGTTGATGAAC 58.843 55.000 0.00 0.00 33.58 3.18
2923 5590 3.185797 GTGGGACGTTGATGAACTGTAAC 59.814 47.826 0.00 0.00 0.00 2.50
2953 5620 5.817296 GGATGTTGATGCAGTGTGATAGTTA 59.183 40.000 0.00 0.00 0.00 2.24
2955 5622 4.631377 TGTTGATGCAGTGTGATAGTTAGC 59.369 41.667 0.00 0.00 0.00 3.09
3015 5688 9.900710 AGTAAGCATAATCACGTATTAAGAGAG 57.099 33.333 0.00 0.00 33.76 3.20
3044 5717 5.494724 ACATGTGTATCATCTGTCAGCTTT 58.505 37.500 0.00 0.00 34.09 3.51
3161 5834 1.672881 GCTGGAGTTACCACATGATGC 59.327 52.381 0.00 0.00 44.64 3.91
3167 5840 4.941263 GGAGTTACCACATGATGCTGTAAA 59.059 41.667 0.00 0.00 38.79 2.01
3176 5849 4.339247 ACATGATGCTGTAAAATAGTGGGC 59.661 41.667 0.00 0.00 0.00 5.36
3238 5911 1.529244 GAGTTGTGGCTGCCAACCT 60.529 57.895 25.23 18.49 42.46 3.50
3253 5927 2.188994 CCTGACAGCTGCTAGGCC 59.811 66.667 20.16 0.00 0.00 5.19
3261 5935 3.100503 GCTGCTAGGCCTGTCCCTC 62.101 68.421 17.99 0.00 36.41 4.30
3262 5936 1.382420 CTGCTAGGCCTGTCCCTCT 60.382 63.158 17.99 0.00 36.41 3.69
3281 5955 4.035208 CCTCTGTGACACACCTAACAAAAC 59.965 45.833 3.56 0.00 32.73 2.43
3320 5994 1.336755 CACTACGCTTGCCCTTTTGTT 59.663 47.619 0.00 0.00 0.00 2.83
3393 6067 0.400594 ACCTAACTCCCAAGTGTGGC 59.599 55.000 0.00 0.00 44.46 5.01
3558 6232 1.200716 CGATGTCTTGCATGCTTTGGT 59.799 47.619 20.33 0.28 38.06 3.67
3559 6233 2.602878 GATGTCTTGCATGCTTTGGTG 58.397 47.619 20.33 2.81 38.06 4.17
3653 6327 6.341316 TCTTCATCATTGCACTAGACCTAAC 58.659 40.000 0.00 0.00 0.00 2.34
3731 6415 3.119814 TGACGAGGAAAGAGATTGAGACG 60.120 47.826 0.00 0.00 0.00 4.18
3805 6489 8.931385 AATGTGGCATAATTGTCTAATCAAAC 57.069 30.769 0.00 0.00 0.00 2.93
3843 6527 2.058798 GTGATACGACGCATACCATGG 58.941 52.381 11.19 11.19 0.00 3.66
3853 6537 1.542915 GCATACCATGGTGGCATCATC 59.457 52.381 28.17 4.05 42.67 2.92
3881 6566 1.825090 TGTTATTGCTGTCCTGGCAG 58.175 50.000 7.75 7.75 40.90 4.85
3892 6577 1.205460 TCCTGGCAGTTAAGGACCCC 61.205 60.000 14.43 0.00 37.68 4.95
3912 6597 7.256368 GGACCCCTATTTTAATGTGGACAAAAA 60.256 37.037 0.00 0.00 0.00 1.94
3964 6649 1.072159 ACTGACTTGTGGAGCCAGC 59.928 57.895 0.00 0.00 0.00 4.85
3978 6663 1.601477 CCAGCCAGACACATGCACA 60.601 57.895 0.00 0.00 0.00 4.57
4021 6706 6.109359 AGTGTTATTCCTACTCTTGTGATGC 58.891 40.000 0.00 0.00 0.00 3.91
4046 6732 3.359695 TTTGGGTATAGTTGACAGGCC 57.640 47.619 0.00 0.00 0.00 5.19
4054 6740 2.557920 AGTTGACAGGCCTTCTCTTG 57.442 50.000 0.00 0.00 0.00 3.02
4080 6767 5.006153 ACTCCCAAAAGTACAGTTTTTGC 57.994 39.130 11.43 0.00 41.75 3.68
4084 6771 4.382577 CCCAAAAGTACAGTTTTTGCAGGT 60.383 41.667 11.43 0.00 41.75 4.00
4105 6792 0.106769 TGTTGCTGCTTCCCTTGACA 60.107 50.000 0.00 0.00 0.00 3.58
4106 6793 0.595095 GTTGCTGCTTCCCTTGACAG 59.405 55.000 0.00 0.00 0.00 3.51
4130 6817 5.094134 GCTGATGACATTTTCTTTCTCTGC 58.906 41.667 0.00 0.00 0.00 4.26
4131 6818 5.106237 GCTGATGACATTTTCTTTCTCTGCT 60.106 40.000 0.00 0.00 0.00 4.24
4145 6832 0.529773 TCTGCTTAATACAGGCGGCG 60.530 55.000 0.51 0.51 35.78 6.46
4199 6886 0.253160 TGGAGAGGCTGGGTATGGTT 60.253 55.000 0.00 0.00 0.00 3.67
4200 6887 0.181350 GGAGAGGCTGGGTATGGTTG 59.819 60.000 0.00 0.00 0.00 3.77
4204 6891 0.620556 AGGCTGGGTATGGTTGTCAG 59.379 55.000 0.00 0.00 0.00 3.51
4219 6906 3.936902 TGTCAGTTTGCAGTCGTTTAC 57.063 42.857 0.00 0.00 0.00 2.01
4233 6920 6.207213 CAGTCGTTTACTACAGAGTCTTTGT 58.793 40.000 1.16 1.16 35.76 2.83
4235 6922 7.222224 CAGTCGTTTACTACAGAGTCTTTGTTT 59.778 37.037 0.71 0.00 35.76 2.83
4236 6923 7.434602 AGTCGTTTACTACAGAGTCTTTGTTTC 59.565 37.037 0.71 0.00 36.36 2.78
4238 6925 7.760794 TCGTTTACTACAGAGTCTTTGTTTCAA 59.239 33.333 0.71 0.00 37.10 2.69
4239 6926 8.548721 CGTTTACTACAGAGTCTTTGTTTCAAT 58.451 33.333 0.71 0.00 37.10 2.57
4581 7270 6.534475 AATATGAAATGAAGGAGCAAGCAA 57.466 33.333 0.00 0.00 0.00 3.91
4647 7336 8.306761 AGGTTTGCTAAAATGAATTAGAACAGG 58.693 33.333 0.00 0.00 35.35 4.00
4833 7526 7.169813 GGTTTTGAAATCAGTTGTTTCCAGATC 59.830 37.037 0.00 0.00 35.28 2.75
4836 7529 5.179368 TGAAATCAGTTGTTTCCAGATCGAC 59.821 40.000 0.00 0.00 35.28 4.20
4870 7563 5.934402 TTGGTGCCCAACTTTTACTTTTA 57.066 34.783 2.84 0.00 38.75 1.52
4877 7570 7.381408 GTGCCCAACTTTTACTTTTACTCAATC 59.619 37.037 0.00 0.00 0.00 2.67
4955 7648 8.181904 ACTTGAATTATCACTTGATGGTTGTT 57.818 30.769 1.77 0.00 34.61 2.83
5022 7715 4.944177 AGCCTACTCTTACCTTGGAGTTA 58.056 43.478 0.00 0.00 42.06 2.24
5121 8051 1.822990 TCTTAGGGTTCTAGTGTGCCG 59.177 52.381 0.00 0.00 0.00 5.69
5148 8078 3.877559 TGTCAAATGGGCTGATACAGAG 58.122 45.455 2.81 0.00 32.44 3.35
5163 8269 0.037303 CAGAGAAGGAAAGGCAGGCA 59.963 55.000 0.00 0.00 0.00 4.75
5308 8414 0.861837 GGTGAGTTGTGCTGTTCTCG 59.138 55.000 0.00 0.00 0.00 4.04
5352 8458 5.520288 CACTACCATATCACAGGAAACTTCG 59.480 44.000 0.00 0.00 40.21 3.79
5440 8676 6.656270 TGTCCAGAATATGCCATTTGCTATAG 59.344 38.462 0.00 0.00 42.00 1.31
5466 8703 9.382275 GTATTTGCATCCCAAATGTAATTTCTT 57.618 29.630 10.57 0.00 44.81 2.52
5527 8765 3.951775 TGCAAACAGAACAGGTGTTTT 57.048 38.095 0.00 0.00 43.97 2.43
5592 8830 8.125448 GTCATAATTTGTCAGATTTACTCCTGC 58.875 37.037 0.00 0.00 0.00 4.85
5608 8846 2.158827 TCCTGCAAAAGCTACTGACACA 60.159 45.455 0.00 0.00 0.00 3.72
5892 9144 6.491403 GTCCTAGATCATTTAACCCAATGCAT 59.509 38.462 0.00 0.00 34.58 3.96
6019 9271 4.874970 AGTTCCAAGTGCAAATGTCAATC 58.125 39.130 0.00 0.00 0.00 2.67
6020 9272 4.586001 AGTTCCAAGTGCAAATGTCAATCT 59.414 37.500 0.00 0.00 0.00 2.40
6029 9281 5.745294 GTGCAAATGTCAATCTTATCGCATT 59.255 36.000 0.00 0.00 0.00 3.56
6091 9343 4.074970 AGGTTAGCCACATTCTGTTCTTG 58.925 43.478 0.00 0.00 37.19 3.02
6215 9469 9.923143 TGGTGAACACTATCCTATAATATTTCG 57.077 33.333 4.96 0.00 0.00 3.46
6275 9547 7.444183 TGCATATAAGGCTATCCAAAGTTGTAC 59.556 37.037 0.00 0.00 33.74 2.90
6290 9562 3.838317 AGTTGTACCACTAGAATCCAGCA 59.162 43.478 0.00 0.00 0.00 4.41
6466 9742 0.179936 GACCTCCTGGAGCCAATCTG 59.820 60.000 18.51 5.32 37.04 2.90
6556 9832 5.246307 AGAGTAATAAGTGCCAAGGTGTTC 58.754 41.667 0.00 0.00 0.00 3.18
6639 9915 1.057822 CTCTTGCGCATCGTTCACG 59.942 57.895 12.75 0.00 41.45 4.35
6791 10069 4.125703 CTCAAGAGAGACAACAACAAGCT 58.874 43.478 0.00 0.00 44.98 3.74
6893 10173 0.179004 ACGCTGATTGTTTCCCCACA 60.179 50.000 0.00 0.00 0.00 4.17
7265 12316 2.621070 AGGAGTCACTAACATGTGGGT 58.379 47.619 0.00 0.00 38.40 4.51
7408 12553 3.188786 CGAACAGGTAGCTGGCGC 61.189 66.667 24.84 12.67 0.00 6.53
7438 12583 3.488569 CCTCATAGGCCGGCCCAA 61.489 66.667 41.72 30.37 36.58 4.12
7439 12584 2.595095 CTCATAGGCCGGCCCAAA 59.405 61.111 41.72 27.59 36.58 3.28
7442 12587 1.680651 CATAGGCCGGCCCAAAACA 60.681 57.895 41.72 19.97 36.58 2.83
7444 12589 2.433646 ATAGGCCGGCCCAAAACACA 62.434 55.000 41.72 16.65 36.58 3.72
7466 12611 5.696724 ACACAGTAGAAGGAAAAATGTCTCG 59.303 40.000 0.00 0.00 0.00 4.04
7495 12663 8.062065 AGTCTGAAGTTTTGGTTTGTTTCATA 57.938 30.769 0.00 0.00 0.00 2.15
7496 12664 8.190784 AGTCTGAAGTTTTGGTTTGTTTCATAG 58.809 33.333 0.00 0.00 0.00 2.23
7548 12716 4.489771 GGTAGCTGGCGCCCACAT 62.490 66.667 26.77 10.03 36.60 3.21
7587 12755 0.250124 CCCACCACACGCAGTAGAAA 60.250 55.000 0.00 0.00 41.61 2.52
7713 12925 2.444421 CCACTTGACTACTAGGGTCGT 58.556 52.381 11.61 4.22 36.58 4.34
7823 13036 9.236691 TGAAAAAGAGTTCATCAAATTTCGAAG 57.763 29.630 0.00 0.00 32.56 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.560966 TTGAATTTTTCATCGCCTAGGAC 57.439 39.130 14.75 2.72 39.84 3.85
48 49 3.462021 CCCAGCCGTTTTGAATTTTTCA 58.538 40.909 0.00 0.00 38.04 2.69
76 77 3.323115 TGGCTTTTATTGTGACATTGCCA 59.677 39.130 5.48 5.48 44.41 4.92
78 79 5.062558 GTGATGGCTTTTATTGTGACATTGC 59.937 40.000 0.00 0.00 0.00 3.56
86 87 9.553064 TTGTTTTTATGTGATGGCTTTTATTGT 57.447 25.926 0.00 0.00 0.00 2.71
95 96 4.869861 GGTGGATTGTTTTTATGTGATGGC 59.130 41.667 0.00 0.00 0.00 4.40
99 100 8.359875 ACATATGGTGGATTGTTTTTATGTGA 57.640 30.769 7.80 0.00 30.23 3.58
106 107 8.061304 AGAGGAATACATATGGTGGATTGTTTT 58.939 33.333 7.80 0.00 41.56 2.43
117 118 5.306937 TGGTGTGGTAGAGGAATACATATGG 59.693 44.000 7.80 0.00 0.00 2.74
133 134 2.380064 ACCATGACAATTGGTGTGGT 57.620 45.000 19.17 19.17 45.71 4.16
140 141 3.446161 AGAAGGCATCACCATGACAATTG 59.554 43.478 3.24 3.24 41.16 2.32
142 143 3.377253 AGAAGGCATCACCATGACAAT 57.623 42.857 0.00 0.00 41.16 2.71
143 144 2.885135 AGAAGGCATCACCATGACAA 57.115 45.000 0.00 0.00 41.16 3.18
144 145 2.306805 AGAAGAAGGCATCACCATGACA 59.693 45.455 0.00 0.00 41.16 3.58
152 155 1.428912 ACCCCAAAGAAGAAGGCATCA 59.571 47.619 0.00 0.00 0.00 3.07
162 165 1.151908 CCCGGAACACCCCAAAGAA 59.848 57.895 0.73 0.00 0.00 2.52
176 179 2.435410 GACAAGGTTACGGCCCGG 60.435 66.667 8.57 0.00 0.00 5.73
193 196 5.608676 TGTATCTAGCGATTAGGAAGTCG 57.391 43.478 0.00 0.00 40.62 4.18
202 205 4.275936 GGCCAAACATTGTATCTAGCGATT 59.724 41.667 0.00 0.00 0.00 3.34
204 207 3.202906 GGCCAAACATTGTATCTAGCGA 58.797 45.455 0.00 0.00 0.00 4.93
205 208 2.032894 CGGCCAAACATTGTATCTAGCG 60.033 50.000 2.24 0.00 0.00 4.26
229 232 1.250328 CATGCCTCTTTGGTGCTGAA 58.750 50.000 0.00 0.00 38.35 3.02
261 264 1.811965 TCCTTGGTCACATGCGATTTG 59.188 47.619 0.00 0.00 0.00 2.32
265 268 0.107703 GGATCCTTGGTCACATGCGA 60.108 55.000 3.84 0.00 0.00 5.10
267 270 0.753111 GGGGATCCTTGGTCACATGC 60.753 60.000 12.58 0.00 0.00 4.06
291 294 6.238347 GCCGTTTTGAAATTTTCACAATCCTT 60.238 34.615 11.30 0.00 39.87 3.36
308 311 1.974343 TTGATCCCCGGCCGTTTTG 60.974 57.895 26.12 8.45 0.00 2.44
313 316 2.372040 TTATCGTTGATCCCCGGCCG 62.372 60.000 21.04 21.04 0.00 6.13
314 317 0.036306 ATTATCGTTGATCCCCGGCC 59.964 55.000 0.00 0.00 0.00 6.13
315 318 1.156736 CATTATCGTTGATCCCCGGC 58.843 55.000 0.00 0.00 0.00 6.13
316 319 2.224185 TGACATTATCGTTGATCCCCGG 60.224 50.000 0.00 0.00 0.00 5.73
318 321 8.786826 TTATTATGACATTATCGTTGATCCCC 57.213 34.615 0.00 0.00 0.00 4.81
324 328 8.678510 GCGGTTTTTATTATGACATTATCGTTG 58.321 33.333 0.00 0.00 0.00 4.10
330 334 7.094334 TGTGTGGCGGTTTTTATTATGACATTA 60.094 33.333 0.00 0.00 0.00 1.90
336 340 6.771188 TTTTGTGTGGCGGTTTTTATTATG 57.229 33.333 0.00 0.00 0.00 1.90
337 341 6.761714 TGTTTTTGTGTGGCGGTTTTTATTAT 59.238 30.769 0.00 0.00 0.00 1.28
338 342 6.103997 TGTTTTTGTGTGGCGGTTTTTATTA 58.896 32.000 0.00 0.00 0.00 0.98
350 354 5.174761 CGTATGTTGGATTGTTTTTGTGTGG 59.825 40.000 0.00 0.00 0.00 4.17
376 381 1.811679 GCTAGTGCGGCAGAGGAAC 60.812 63.158 1.18 0.00 0.00 3.62
384 389 0.804989 ATTTTGACAGCTAGTGCGGC 59.195 50.000 0.00 0.00 45.42 6.53
400 405 0.035056 CAGAGGGGAAGGCGTCATTT 60.035 55.000 2.23 0.00 0.00 2.32
402 407 2.370445 CCAGAGGGGAAGGCGTCAT 61.370 63.158 2.23 0.00 40.01 3.06
422 427 1.170290 AGGTTGCGTTTCCGGAAAGG 61.170 55.000 34.51 34.51 46.14 3.11
424 429 1.500512 CGAGGTTGCGTTTCCGGAAA 61.501 55.000 25.67 25.67 46.14 3.13
436 441 1.443872 CGGGAAGTCGTCGAGGTTG 60.444 63.158 4.85 0.00 0.00 3.77
453 458 0.104304 AACCTTGTATCTAGCGGCCG 59.896 55.000 24.05 24.05 0.00 6.13
514 519 0.517132 CGTGCGCTTTGACGAATCAG 60.517 55.000 12.12 0.00 37.81 2.90
517 522 1.204062 CACGTGCGCTTTGACGAAT 59.796 52.632 22.58 0.44 38.94 3.34
548 553 2.610727 CGGAAACTGTGAGAAGGACCTC 60.611 54.545 0.00 0.00 0.00 3.85
550 555 1.070289 ACGGAAACTGTGAGAAGGACC 59.930 52.381 0.00 0.00 0.00 4.46
552 557 3.134081 AGAAACGGAAACTGTGAGAAGGA 59.866 43.478 0.00 0.00 0.00 3.36
553 558 3.467803 AGAAACGGAAACTGTGAGAAGG 58.532 45.455 0.00 0.00 0.00 3.46
555 560 4.369182 GAGAGAAACGGAAACTGTGAGAA 58.631 43.478 0.00 0.00 0.00 2.87
558 563 2.739292 CGAGAGAAACGGAAACTGTGA 58.261 47.619 0.00 0.00 0.00 3.58
568 573 2.434359 GTGCCCCCGAGAGAAACG 60.434 66.667 0.00 0.00 0.00 3.60
582 587 1.661112 GATCTAGAAACTGTGGCGTGC 59.339 52.381 0.00 0.00 0.00 5.34
583 588 3.238108 AGATCTAGAAACTGTGGCGTG 57.762 47.619 0.00 0.00 0.00 5.34
584 589 5.599999 AATAGATCTAGAAACTGTGGCGT 57.400 39.130 8.70 0.00 0.00 5.68
585 590 6.042777 TGAAATAGATCTAGAAACTGTGGCG 58.957 40.000 8.70 0.00 0.00 5.69
586 591 7.849804 TTGAAATAGATCTAGAAACTGTGGC 57.150 36.000 8.70 0.00 0.00 5.01
590 595 7.439356 TCGGCATTGAAATAGATCTAGAAACTG 59.561 37.037 8.70 3.20 0.00 3.16
620 625 0.394565 AGTGTGTGAAGAGAGCACCC 59.605 55.000 0.00 0.00 35.43 4.61
648 660 7.452880 TGTTCTCTTTCCATTTCCATTGTAG 57.547 36.000 0.00 0.00 0.00 2.74
651 663 8.611654 AATTTGTTCTCTTTCCATTTCCATTG 57.388 30.769 0.00 0.00 0.00 2.82
668 680 9.283768 AGATTTGTTGGGGAAATTAATTTGTTC 57.716 29.630 17.98 4.13 0.00 3.18
677 690 6.545666 GGTTCAAAAGATTTGTTGGGGAAATT 59.454 34.615 3.06 0.00 0.00 1.82
678 691 6.061441 GGTTCAAAAGATTTGTTGGGGAAAT 58.939 36.000 3.06 0.00 0.00 2.17
679 692 5.190726 AGGTTCAAAAGATTTGTTGGGGAAA 59.809 36.000 3.06 0.00 0.00 3.13
680 693 4.719273 AGGTTCAAAAGATTTGTTGGGGAA 59.281 37.500 3.06 0.00 0.00 3.97
681 694 4.294347 AGGTTCAAAAGATTTGTTGGGGA 58.706 39.130 3.06 0.00 0.00 4.81
682 695 4.687901 AGGTTCAAAAGATTTGTTGGGG 57.312 40.909 3.06 0.00 0.00 4.96
683 696 5.917462 AGAAGGTTCAAAAGATTTGTTGGG 58.083 37.500 3.06 0.00 0.00 4.12
684 697 5.985530 GGAGAAGGTTCAAAAGATTTGTTGG 59.014 40.000 3.06 0.00 0.00 3.77
685 698 5.985530 GGGAGAAGGTTCAAAAGATTTGTTG 59.014 40.000 3.06 0.00 0.00 3.33
686 699 5.660864 TGGGAGAAGGTTCAAAAGATTTGTT 59.339 36.000 3.06 0.00 0.00 2.83
687 700 5.208121 TGGGAGAAGGTTCAAAAGATTTGT 58.792 37.500 3.06 0.00 0.00 2.83
688 701 5.789643 TGGGAGAAGGTTCAAAAGATTTG 57.210 39.130 0.00 0.00 0.00 2.32
689 702 5.660864 TGTTGGGAGAAGGTTCAAAAGATTT 59.339 36.000 0.00 0.00 0.00 2.17
690 703 5.208121 TGTTGGGAGAAGGTTCAAAAGATT 58.792 37.500 0.00 0.00 0.00 2.40
691 704 4.803452 TGTTGGGAGAAGGTTCAAAAGAT 58.197 39.130 0.00 0.00 0.00 2.40
692 705 4.243793 TGTTGGGAGAAGGTTCAAAAGA 57.756 40.909 0.00 0.00 0.00 2.52
693 706 5.337578 TTTGTTGGGAGAAGGTTCAAAAG 57.662 39.130 0.00 0.00 0.00 2.27
694 707 5.948742 ATTTGTTGGGAGAAGGTTCAAAA 57.051 34.783 0.00 0.00 0.00 2.44
695 708 5.948742 AATTTGTTGGGAGAAGGTTCAAA 57.051 34.783 0.00 0.00 0.00 2.69
696 709 5.948742 AAATTTGTTGGGAGAAGGTTCAA 57.051 34.783 0.00 0.00 0.00 2.69
697 710 5.396213 CCAAAATTTGTTGGGAGAAGGTTCA 60.396 40.000 4.92 0.00 43.79 3.18
698 711 5.056480 CCAAAATTTGTTGGGAGAAGGTTC 58.944 41.667 4.92 0.00 43.79 3.62
699 712 4.719273 TCCAAAATTTGTTGGGAGAAGGTT 59.281 37.500 8.69 0.00 46.89 3.50
700 713 4.294347 TCCAAAATTTGTTGGGAGAAGGT 58.706 39.130 8.69 0.00 46.89 3.50
701 714 4.953940 TCCAAAATTTGTTGGGAGAAGG 57.046 40.909 8.69 0.00 46.89 3.46
702 715 5.179929 GCATTCCAAAATTTGTTGGGAGAAG 59.820 40.000 8.69 0.00 46.89 2.85
703 716 5.062528 GCATTCCAAAATTTGTTGGGAGAA 58.937 37.500 8.69 0.76 46.89 2.87
704 717 4.102210 TGCATTCCAAAATTTGTTGGGAGA 59.898 37.500 8.69 0.00 46.89 3.71
705 718 4.387598 TGCATTCCAAAATTTGTTGGGAG 58.612 39.130 8.69 1.93 46.89 4.30
726 739 2.238395 CCTTCCTCCTCTTTCCCTCTTG 59.762 54.545 0.00 0.00 0.00 3.02
770 783 6.153680 TGACCTCCTTTTCTTTTGTTTTGCTA 59.846 34.615 0.00 0.00 0.00 3.49
771 784 5.046663 TGACCTCCTTTTCTTTTGTTTTGCT 60.047 36.000 0.00 0.00 0.00 3.91
772 785 5.063438 GTGACCTCCTTTTCTTTTGTTTTGC 59.937 40.000 0.00 0.00 0.00 3.68
773 786 6.162777 TGTGACCTCCTTTTCTTTTGTTTTG 58.837 36.000 0.00 0.00 0.00 2.44
774 787 6.353404 TGTGACCTCCTTTTCTTTTGTTTT 57.647 33.333 0.00 0.00 0.00 2.43
775 788 5.993748 TGTGACCTCCTTTTCTTTTGTTT 57.006 34.783 0.00 0.00 0.00 2.83
776 789 5.105351 CCTTGTGACCTCCTTTTCTTTTGTT 60.105 40.000 0.00 0.00 0.00 2.83
777 790 4.402474 CCTTGTGACCTCCTTTTCTTTTGT 59.598 41.667 0.00 0.00 0.00 2.83
778 791 4.644685 TCCTTGTGACCTCCTTTTCTTTTG 59.355 41.667 0.00 0.00 0.00 2.44
779 792 4.645136 GTCCTTGTGACCTCCTTTTCTTTT 59.355 41.667 0.00 0.00 38.09 2.27
783 796 3.142174 CTGTCCTTGTGACCTCCTTTTC 58.858 50.000 0.00 0.00 43.78 2.29
784 797 2.777692 TCTGTCCTTGTGACCTCCTTTT 59.222 45.455 0.00 0.00 43.78 2.27
792 805 2.341846 TGGGTTTCTGTCCTTGTGAC 57.658 50.000 0.00 0.00 44.72 3.67
824 856 3.837731 TGATATTGATGCGAGTGGGGATA 59.162 43.478 0.00 0.00 0.00 2.59
825 857 2.639347 TGATATTGATGCGAGTGGGGAT 59.361 45.455 0.00 0.00 0.00 3.85
864 897 1.455786 CTCGTTCGTTGCAGTTGTAGG 59.544 52.381 0.00 0.00 0.00 3.18
878 911 2.546195 ATGCACGTAGTCTCTCGTTC 57.454 50.000 0.00 0.00 41.61 3.95
880 913 2.548904 GGATATGCACGTAGTCTCTCGT 59.451 50.000 0.00 0.00 41.61 4.18
881 914 2.548480 TGGATATGCACGTAGTCTCTCG 59.452 50.000 0.00 0.00 41.61 4.04
941 1169 1.768077 GGTGATGGAGGGAGGGAGG 60.768 68.421 0.00 0.00 0.00 4.30
942 1170 0.762461 GAGGTGATGGAGGGAGGGAG 60.762 65.000 0.00 0.00 0.00 4.30
943 1171 1.314867 GAGGTGATGGAGGGAGGGA 59.685 63.158 0.00 0.00 0.00 4.20
944 1172 1.768077 GGAGGTGATGGAGGGAGGG 60.768 68.421 0.00 0.00 0.00 4.30
991 1228 2.285083 GTTGGTTTGTTTTTCTGGGGC 58.715 47.619 0.00 0.00 0.00 5.80
992 1229 3.618690 TGTTGGTTTGTTTTTCTGGGG 57.381 42.857 0.00 0.00 0.00 4.96
993 1230 5.948992 TTTTGTTGGTTTGTTTTTCTGGG 57.051 34.783 0.00 0.00 0.00 4.45
994 1231 7.176741 CGTATTTTGTTGGTTTGTTTTTCTGG 58.823 34.615 0.00 0.00 0.00 3.86
995 1232 6.680758 GCGTATTTTGTTGGTTTGTTTTTCTG 59.319 34.615 0.00 0.00 0.00 3.02
996 1233 6.592220 AGCGTATTTTGTTGGTTTGTTTTTCT 59.408 30.769 0.00 0.00 0.00 2.52
997 1234 6.767080 AGCGTATTTTGTTGGTTTGTTTTTC 58.233 32.000 0.00 0.00 0.00 2.29
1019 1256 2.514824 CCGGGGCTAGCAAGAAGC 60.515 66.667 18.24 0.00 46.19 3.86
1252 1517 2.361104 TCCTTGAACATGGCGGCC 60.361 61.111 13.32 13.32 0.00 6.13
1395 1660 1.291132 GAAAGAGAGCCCGAATTCCG 58.709 55.000 0.00 0.00 38.18 4.30
1578 1844 2.413765 GGACGCGAGATCTCCCAC 59.586 66.667 15.93 6.11 0.00 4.61
1579 1845 2.044352 TGGACGCGAGATCTCCCA 60.044 61.111 15.93 14.74 0.00 4.37
1608 1874 0.677098 TTAGAGCTCGAGACCGCAGT 60.677 55.000 18.75 0.00 35.37 4.40
1690 1956 7.537991 CGAAAATATTTAACACCGTGCCTAAAA 59.462 33.333 0.01 0.00 0.00 1.52
1694 1960 4.142556 CCGAAAATATTTAACACCGTGCCT 60.143 41.667 0.01 0.00 0.00 4.75
1696 1962 4.972201 TCCGAAAATATTTAACACCGTGC 58.028 39.130 0.01 0.00 0.00 5.34
1698 1964 6.806388 ACTTCCGAAAATATTTAACACCGT 57.194 33.333 0.01 0.00 0.00 4.83
1699 1965 7.480542 CAGAACTTCCGAAAATATTTAACACCG 59.519 37.037 0.01 1.39 0.00 4.94
1700 1966 8.294577 ACAGAACTTCCGAAAATATTTAACACC 58.705 33.333 0.01 0.00 0.00 4.16
1701 1967 9.673454 AACAGAACTTCCGAAAATATTTAACAC 57.327 29.630 0.01 0.00 0.00 3.32
1732 2003 7.619512 AGTCCCTCTAGAGAAAAGAAAAGAA 57.380 36.000 21.76 0.00 0.00 2.52
1771 2043 0.247460 GCTTCCAATCCAAACAGGGC 59.753 55.000 0.00 0.00 38.24 5.19
1772 2044 1.631405 TGCTTCCAATCCAAACAGGG 58.369 50.000 0.00 0.00 38.24 4.45
1773 2045 3.592059 CATTGCTTCCAATCCAAACAGG 58.408 45.455 0.00 0.00 39.60 4.00
1836 2108 9.023962 TGAAAACATAGCTCCAATCTACAAAAT 57.976 29.630 0.00 0.00 0.00 1.82
1886 2158 8.902540 ACAAAACTTACTTATGACACTGATGA 57.097 30.769 0.00 0.00 0.00 2.92
1887 2159 8.230486 GGACAAAACTTACTTATGACACTGATG 58.770 37.037 0.00 0.00 0.00 3.07
1888 2160 8.157476 AGGACAAAACTTACTTATGACACTGAT 58.843 33.333 0.00 0.00 0.00 2.90
1889 2161 7.441157 CAGGACAAAACTTACTTATGACACTGA 59.559 37.037 0.00 0.00 0.00 3.41
1890 2162 7.576236 CAGGACAAAACTTACTTATGACACTG 58.424 38.462 0.00 0.00 0.00 3.66
1891 2163 6.204882 GCAGGACAAAACTTACTTATGACACT 59.795 38.462 0.00 0.00 0.00 3.55
1892 2164 6.204882 AGCAGGACAAAACTTACTTATGACAC 59.795 38.462 0.00 0.00 0.00 3.67
1893 2165 6.296026 AGCAGGACAAAACTTACTTATGACA 58.704 36.000 0.00 0.00 0.00 3.58
1894 2166 6.803154 AGCAGGACAAAACTTACTTATGAC 57.197 37.500 0.00 0.00 0.00 3.06
1895 2167 7.386848 GTGTAGCAGGACAAAACTTACTTATGA 59.613 37.037 0.00 0.00 0.00 2.15
1905 2177 1.263217 CCACGTGTAGCAGGACAAAAC 59.737 52.381 15.65 0.00 0.00 2.43
2057 2337 2.759191 TCAAGCAGCAGAGTAACACTG 58.241 47.619 0.00 0.00 38.27 3.66
2150 2430 3.358076 CTTGTCGGCCTCGTCCCTC 62.358 68.421 0.00 0.00 37.69 4.30
2171 2451 3.407252 CTTGTTGTGATACGCATTCACG 58.593 45.455 8.03 0.00 45.14 4.35
2223 2503 3.276857 AGCACACTGATAGGCAAAGATG 58.723 45.455 0.00 0.00 0.00 2.90
2253 2534 0.321653 ACAATTCCACCTCGGCAGAC 60.322 55.000 0.00 0.00 33.14 3.51
2310 2591 6.317140 ACACTCATGAACCACATCATATTCAC 59.683 38.462 0.00 0.00 37.96 3.18
2311 2592 6.417258 ACACTCATGAACCACATCATATTCA 58.583 36.000 0.00 0.00 37.96 2.57
2312 2593 6.932356 ACACTCATGAACCACATCATATTC 57.068 37.500 0.00 0.00 37.96 1.75
2314 2595 5.824624 GGAACACTCATGAACCACATCATAT 59.175 40.000 0.00 0.00 37.96 1.78
2315 2596 5.185454 GGAACACTCATGAACCACATCATA 58.815 41.667 0.00 0.00 37.96 2.15
2358 5011 1.372683 GAAGACAGCTCCCAGTGCA 59.627 57.895 0.00 0.00 0.00 4.57
2384 5037 6.715264 CCCCACAAAGATTTTTAGAGTACACT 59.285 38.462 0.00 0.00 0.00 3.55
2412 5065 8.970859 AGTGACTATTATCAATTTTCCCAGAG 57.029 34.615 0.00 0.00 0.00 3.35
2459 5113 3.552699 CAGGTGTTCAATGCAAACAGTTG 59.447 43.478 2.70 0.00 37.30 3.16
2526 5180 1.459450 AATAGTTTGCGCGACCCAAT 58.541 45.000 12.10 0.00 0.00 3.16
2527 5181 1.240256 AAATAGTTTGCGCGACCCAA 58.760 45.000 12.10 0.80 0.00 4.12
2598 5252 1.838112 TAAAGCCTGACAGCCAATGG 58.162 50.000 0.00 0.00 0.00 3.16
2599 5253 4.159135 AGAAATAAAGCCTGACAGCCAATG 59.841 41.667 0.00 0.00 0.00 2.82
2600 5254 4.159135 CAGAAATAAAGCCTGACAGCCAAT 59.841 41.667 0.00 0.00 0.00 3.16
2601 5255 3.507233 CAGAAATAAAGCCTGACAGCCAA 59.493 43.478 0.00 0.00 0.00 4.52
2602 5256 3.084039 CAGAAATAAAGCCTGACAGCCA 58.916 45.455 0.00 0.00 0.00 4.75
2603 5257 3.347216 TCAGAAATAAAGCCTGACAGCC 58.653 45.455 0.00 0.00 32.57 4.85
2681 5345 6.370718 AGTCGCTGGAGTTACGAAAAATAAAT 59.629 34.615 0.00 0.00 37.60 1.40
2689 5353 2.806608 AAAGTCGCTGGAGTTACGAA 57.193 45.000 0.00 0.00 37.60 3.85
2708 5372 8.825667 AAGCGCAATATAAGAAAAAGGAAAAA 57.174 26.923 11.47 0.00 0.00 1.94
2771 5438 9.503427 GAAGGTTACAAGCATGATTATTTGTAC 57.497 33.333 0.00 0.00 36.18 2.90
2785 5452 5.391312 AAACATCCATGAAGGTTACAAGC 57.609 39.130 0.00 0.00 39.02 4.01
2804 5471 9.786105 GTTACTATACTGTCCTCAAGAGTAAAC 57.214 37.037 0.00 0.00 37.30 2.01
2884 5551 2.551287 CCCACAGGTTACGGTTCATCAA 60.551 50.000 0.00 0.00 0.00 2.57
2890 5557 1.368579 CGTCCCACAGGTTACGGTT 59.631 57.895 0.00 0.00 30.13 4.44
2891 5558 1.402107 AACGTCCCACAGGTTACGGT 61.402 55.000 11.28 3.73 35.45 4.83
2892 5559 0.947180 CAACGTCCCACAGGTTACGG 60.947 60.000 11.28 0.00 35.45 4.02
2893 5560 0.032403 TCAACGTCCCACAGGTTACG 59.968 55.000 0.00 6.63 36.62 3.18
2894 5561 2.073816 CATCAACGTCCCACAGGTTAC 58.926 52.381 0.00 0.00 31.69 2.50
2895 5562 1.972075 TCATCAACGTCCCACAGGTTA 59.028 47.619 0.00 0.00 31.69 2.85
2896 5563 0.762418 TCATCAACGTCCCACAGGTT 59.238 50.000 0.00 0.00 33.18 3.50
2897 5564 0.762418 TTCATCAACGTCCCACAGGT 59.238 50.000 0.00 0.00 0.00 4.00
2898 5565 1.156736 GTTCATCAACGTCCCACAGG 58.843 55.000 0.00 0.00 0.00 4.00
2899 5566 1.800586 CAGTTCATCAACGTCCCACAG 59.199 52.381 0.00 0.00 37.61 3.66
2900 5567 1.140052 ACAGTTCATCAACGTCCCACA 59.860 47.619 0.00 0.00 37.61 4.17
2901 5568 1.878953 ACAGTTCATCAACGTCCCAC 58.121 50.000 0.00 0.00 37.61 4.61
2902 5569 3.395639 GTTACAGTTCATCAACGTCCCA 58.604 45.455 0.00 0.00 37.61 4.37
2903 5570 2.740447 GGTTACAGTTCATCAACGTCCC 59.260 50.000 0.00 0.00 37.61 4.46
2904 5571 3.432252 CAGGTTACAGTTCATCAACGTCC 59.568 47.826 0.00 0.00 37.61 4.79
2905 5572 4.056050 ACAGGTTACAGTTCATCAACGTC 58.944 43.478 0.00 0.00 37.61 4.34
2906 5573 3.807622 CACAGGTTACAGTTCATCAACGT 59.192 43.478 0.00 0.00 37.61 3.99
2907 5574 3.186409 CCACAGGTTACAGTTCATCAACG 59.814 47.826 0.00 0.00 37.61 4.10
2908 5575 3.502211 CCCACAGGTTACAGTTCATCAAC 59.498 47.826 0.00 0.00 0.00 3.18
2909 5576 3.392947 TCCCACAGGTTACAGTTCATCAA 59.607 43.478 0.00 0.00 0.00 2.57
2910 5577 2.976185 TCCCACAGGTTACAGTTCATCA 59.024 45.455 0.00 0.00 0.00 3.07
2911 5578 3.695830 TCCCACAGGTTACAGTTCATC 57.304 47.619 0.00 0.00 0.00 2.92
2912 5579 3.330701 ACATCCCACAGGTTACAGTTCAT 59.669 43.478 0.00 0.00 0.00 2.57
2913 5580 2.708861 ACATCCCACAGGTTACAGTTCA 59.291 45.455 0.00 0.00 0.00 3.18
2914 5581 3.418684 ACATCCCACAGGTTACAGTTC 57.581 47.619 0.00 0.00 0.00 3.01
2917 5584 3.417069 TCAACATCCCACAGGTTACAG 57.583 47.619 0.00 0.00 0.00 2.74
2923 5590 1.100510 CTGCATCAACATCCCACAGG 58.899 55.000 0.00 0.00 0.00 4.00
3030 5703 4.401022 ACAATTCCAAAGCTGACAGATGA 58.599 39.130 6.65 0.00 0.00 2.92
3032 5705 4.401022 TGACAATTCCAAAGCTGACAGAT 58.599 39.130 6.65 0.00 0.00 2.90
3044 5717 4.133078 GCCCAAATGTTTTGACAATTCCA 58.867 39.130 1.65 0.00 0.00 3.53
3161 5834 3.331150 TGACACGCCCACTATTTTACAG 58.669 45.455 0.00 0.00 0.00 2.74
3167 5840 2.487762 CAAACATGACACGCCCACTATT 59.512 45.455 0.00 0.00 0.00 1.73
3176 5849 6.519353 TTACTTACTGTCAAACATGACACG 57.481 37.500 7.53 7.08 43.09 4.49
3238 5911 1.892819 GACAGGCCTAGCAGCTGTCA 61.893 60.000 16.64 2.18 39.07 3.58
3244 5917 1.382420 AGAGGGACAGGCCTAGCAG 60.382 63.158 3.98 0.00 36.66 4.24
3245 5918 1.687146 CAGAGGGACAGGCCTAGCA 60.687 63.158 3.98 0.00 36.66 3.49
3253 5927 0.034059 GGTGTGTCACAGAGGGACAG 59.966 60.000 5.74 0.00 45.21 3.51
3261 5935 5.560966 AAGTTTTGTTAGGTGTGTCACAG 57.439 39.130 5.74 0.00 35.86 3.66
3262 5936 5.704888 CAAAGTTTTGTTAGGTGTGTCACA 58.295 37.500 0.18 0.18 33.25 3.58
3281 5955 4.874970 AGTGGCTAAATTGTTGAGCAAAG 58.125 39.130 1.76 0.00 40.91 2.77
3393 6067 1.270907 AGGAGCCAGGTCACAACTAG 58.729 55.000 0.00 0.00 0.00 2.57
3653 6327 2.416747 TGAAAGACCATCGACTGCAAG 58.583 47.619 0.00 0.00 42.29 4.01
3712 6396 2.159310 AGCGTCTCAATCTCTTTCCTCG 60.159 50.000 0.00 0.00 0.00 4.63
3713 6397 3.119316 TCAGCGTCTCAATCTCTTTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
3714 6398 2.828520 TCAGCGTCTCAATCTCTTTCCT 59.171 45.455 0.00 0.00 0.00 3.36
3715 6399 3.186119 CTCAGCGTCTCAATCTCTTTCC 58.814 50.000 0.00 0.00 0.00 3.13
3716 6400 3.843999 ACTCAGCGTCTCAATCTCTTTC 58.156 45.455 0.00 0.00 0.00 2.62
3717 6401 3.951775 ACTCAGCGTCTCAATCTCTTT 57.048 42.857 0.00 0.00 0.00 2.52
3718 6402 4.887071 AGATACTCAGCGTCTCAATCTCTT 59.113 41.667 0.00 0.00 0.00 2.85
3719 6403 4.460263 AGATACTCAGCGTCTCAATCTCT 58.540 43.478 0.00 0.00 0.00 3.10
3720 6404 4.829064 AGATACTCAGCGTCTCAATCTC 57.171 45.455 0.00 0.00 0.00 2.75
3721 6405 6.488344 TGATTAGATACTCAGCGTCTCAATCT 59.512 38.462 0.00 0.00 0.00 2.40
3731 6415 4.342378 TCAGTGGGTGATTAGATACTCAGC 59.658 45.833 0.00 1.92 38.77 4.26
3830 6514 0.819259 ATGCCACCATGGTATGCGTC 60.819 55.000 25.29 10.64 41.43 5.19
3881 6566 7.067859 GTCCACATTAAAATAGGGGTCCTTAAC 59.932 40.741 0.00 0.00 34.61 2.01
3932 6617 6.153000 CCACAAGTCAGTGATTACCTACTACT 59.847 42.308 0.00 0.00 42.05 2.57
3938 6623 3.307059 GCTCCACAAGTCAGTGATTACCT 60.307 47.826 0.00 0.00 42.05 3.08
3964 6649 0.963856 AGCCATGTGCATGTGTCTGG 60.964 55.000 10.76 0.00 44.83 3.86
4006 6691 5.297776 CCAAATAAGGCATCACAAGAGTAGG 59.702 44.000 0.00 0.00 0.00 3.18
4021 6706 5.531287 GCCTGTCAACTATACCCAAATAAGG 59.469 44.000 0.00 0.00 0.00 2.69
4054 6740 6.694877 AAAACTGTACTTTTGGGAGTCTTC 57.305 37.500 0.00 0.00 0.00 2.87
4062 6748 4.754322 ACCTGCAAAAACTGTACTTTTGG 58.246 39.130 16.22 5.88 41.82 3.28
4080 6767 1.239968 GGGAAGCAGCAACAGACCTG 61.240 60.000 0.00 0.00 0.00 4.00
4084 6771 0.473755 TCAAGGGAAGCAGCAACAGA 59.526 50.000 0.00 0.00 0.00 3.41
4105 6792 5.415077 CAGAGAAAGAAAATGTCATCAGCCT 59.585 40.000 0.00 0.00 0.00 4.58
4106 6793 5.638783 CAGAGAAAGAAAATGTCATCAGCC 58.361 41.667 0.00 0.00 0.00 4.85
4130 6817 1.488527 GACTCGCCGCCTGTATTAAG 58.511 55.000 0.00 0.00 0.00 1.85
4131 6818 0.103572 GGACTCGCCGCCTGTATTAA 59.896 55.000 0.00 0.00 0.00 1.40
4199 6886 3.527533 AGTAAACGACTGCAAACTGACA 58.472 40.909 0.00 0.00 36.87 3.58
4200 6887 4.505191 TGTAGTAAACGACTGCAAACTGAC 59.495 41.667 0.00 0.00 46.45 3.51
4238 6925 9.778741 TCACCAGAAAATAGCGAGAAAATATAT 57.221 29.630 0.00 0.00 0.00 0.86
4239 6926 9.042008 GTCACCAGAAAATAGCGAGAAAATATA 57.958 33.333 0.00 0.00 0.00 0.86
4247 6934 3.369147 CACTGTCACCAGAAAATAGCGAG 59.631 47.826 0.00 0.00 41.50 5.03
4250 6937 4.515191 TGTTCACTGTCACCAGAAAATAGC 59.485 41.667 0.00 0.00 41.50 2.97
4261 6948 3.466836 TGAATGTCCTGTTCACTGTCAC 58.533 45.455 0.00 0.00 31.07 3.67
4516 7204 8.863049 CAGCTGCAATAACCAAAGTTAATTAAG 58.137 33.333 0.00 0.00 41.68 1.85
4581 7270 5.573380 TTTAGATCCTCAATAGCTGCCAT 57.427 39.130 0.00 0.00 0.00 4.40
4642 7331 4.709886 ACAAGTAAAAGTTGCCTTCCTGTT 59.290 37.500 0.00 0.00 31.85 3.16
4647 7336 6.699642 TGCAATAACAAGTAAAAGTTGCCTTC 59.300 34.615 0.00 0.00 39.60 3.46
4717 7408 8.630054 TGGTAAAGTAAGTGCATAGTTCATTT 57.370 30.769 0.00 0.00 0.00 2.32
4734 7425 3.543665 TGTTTGTAACGGCTGGTAAAGT 58.456 40.909 0.00 0.00 0.00 2.66
4735 7426 4.201930 TGTTGTTTGTAACGGCTGGTAAAG 60.202 41.667 0.00 0.00 33.28 1.85
4739 7430 1.752683 TGTTGTTTGTAACGGCTGGT 58.247 45.000 0.00 0.00 33.28 4.00
4833 7526 1.083489 ACCAATTGTATGCACCGTCG 58.917 50.000 4.43 0.00 0.00 5.12
4836 7529 0.179140 GGCACCAATTGTATGCACCG 60.179 55.000 25.04 3.95 41.27 4.94
4938 7631 8.046708 ACTAGCAATAACAACCATCAAGTGATA 58.953 33.333 0.00 0.00 32.63 2.15
5091 7978 9.268282 ACACTAGAACCCTAAGAAATAGATCAA 57.732 33.333 0.00 0.00 33.04 2.57
5121 8051 1.686052 TCAGCCCATTTGACAACCAAC 59.314 47.619 0.00 0.00 33.85 3.77
5148 8078 2.335712 CCGTGCCTGCCTTTCCTTC 61.336 63.158 0.00 0.00 0.00 3.46
5163 8269 1.230324 GAGCTTTCTGTGCTTTCCGT 58.770 50.000 0.00 0.00 41.30 4.69
5308 8414 4.102649 GTGTGTAGTGCAAACAAGGTTTC 58.897 43.478 4.80 0.00 35.40 2.78
5352 8458 7.942894 AGGGCCAGAACATTTAAGGTATTATAC 59.057 37.037 6.18 0.00 0.00 1.47
5440 8676 8.947055 AGAAATTACATTTGGGATGCAAATAC 57.053 30.769 0.00 0.00 31.76 1.89
5466 8703 6.376018 GGGCCACAACAGATACATAAGTTTTA 59.624 38.462 4.39 0.00 0.00 1.52
5592 8830 7.968405 GGGTATTTAATGTGTCAGTAGCTTTTG 59.032 37.037 0.00 0.00 0.00 2.44
5892 9144 0.468226 CTGGATACGGGCTGCCTAAA 59.532 55.000 19.68 4.20 40.24 1.85
6019 9271 3.107642 ACGGGGACTAAATGCGATAAG 57.892 47.619 0.00 0.00 0.00 1.73
6020 9272 3.553508 GCTACGGGGACTAAATGCGATAA 60.554 47.826 0.00 0.00 0.00 1.75
6029 9281 0.179468 GCCATTGCTACGGGGACTAA 59.821 55.000 0.00 0.00 33.53 2.24
6085 9337 7.591426 CCTTGCACAATAAGTAAAGACAAGAAC 59.409 37.037 0.00 0.00 35.21 3.01
6091 9343 5.007682 TCCCCTTGCACAATAAGTAAAGAC 58.992 41.667 0.00 0.00 0.00 3.01
6226 9498 7.121907 TGCATGTTGCTACCAAATGTAAAGATA 59.878 33.333 0.75 0.00 45.31 1.98
6228 9500 5.242615 TGCATGTTGCTACCAAATGTAAAGA 59.757 36.000 0.75 0.00 45.31 2.52
6275 9547 7.756395 AAATATTGATGCTGGATTCTAGTGG 57.244 36.000 0.00 0.00 0.00 4.00
6290 9562 8.752187 AGTTGCCAATCAGTGTTAAATATTGAT 58.248 29.630 0.00 0.00 30.77 2.57
6466 9742 9.574516 AATTCTTGTGGGATATGGTAGATAAAC 57.425 33.333 0.00 0.00 0.00 2.01
6791 10069 9.883142 ATGATTTTTGTCAAAAAGGTTTACTGA 57.117 25.926 23.77 5.14 42.97 3.41
7027 10307 2.972348 TCTGATGTATACAGGGGGTCC 58.028 52.381 11.91 0.00 36.22 4.46
7074 10354 1.005097 AGAGCCATTTGCCATGAGACA 59.995 47.619 0.00 0.00 42.71 3.41
7075 10355 1.404391 CAGAGCCATTTGCCATGAGAC 59.596 52.381 0.00 0.00 42.71 3.36
7431 12576 0.591170 CTACTGTGTGTTTTGGGCCG 59.409 55.000 0.00 0.00 0.00 6.13
7438 12583 7.339466 AGACATTTTTCCTTCTACTGTGTGTTT 59.661 33.333 0.00 0.00 0.00 2.83
7439 12584 6.828785 AGACATTTTTCCTTCTACTGTGTGTT 59.171 34.615 0.00 0.00 0.00 3.32
7442 12587 5.696724 CGAGACATTTTTCCTTCTACTGTGT 59.303 40.000 0.00 0.00 0.00 3.72
7444 12589 5.696724 CACGAGACATTTTTCCTTCTACTGT 59.303 40.000 0.00 0.00 0.00 3.55
7466 12611 6.190954 ACAAACCAAAACTTCAGACTACAC 57.809 37.500 0.00 0.00 0.00 2.90
7495 12663 2.821969 AGGCGCTGAACAAATCATTTCT 59.178 40.909 7.64 0.00 37.44 2.52
7496 12664 3.221964 AGGCGCTGAACAAATCATTTC 57.778 42.857 7.64 0.00 37.44 2.17
7548 12716 4.175337 GGCCTATGAGGTGCGGCA 62.175 66.667 0.00 0.00 44.23 5.69
7576 12744 4.694339 AGACAGTTTTCTTTCTACTGCGT 58.306 39.130 0.00 0.00 42.28 5.24
7626 12795 1.878656 CGAGTTTGAGTCCCTCCGCT 61.879 60.000 0.00 0.00 0.00 5.52
7639 12808 1.196808 CTTGTATTGTGGCGCGAGTTT 59.803 47.619 12.10 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.