Multiple sequence alignment - TraesCS3B01G515300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G515300 chr3B 100.000 3251 0 0 1 3251 757774428 757771178 0.000000e+00 6004.0
1 TraesCS3B01G515300 chr3B 86.617 1218 148 13 1043 2251 757739781 757738570 0.000000e+00 1332.0
2 TraesCS3B01G515300 chr3B 82.252 1279 196 25 992 2252 757734142 757735407 0.000000e+00 1075.0
3 TraesCS3B01G515300 chr3B 92.946 723 47 4 1 719 78600357 78601079 0.000000e+00 1050.0
4 TraesCS3B01G515300 chr3B 79.504 1210 209 29 1068 2253 757807706 757808900 0.000000e+00 824.0
5 TraesCS3B01G515300 chr3B 93.452 168 11 0 757 924 757740040 757739873 1.940000e-62 250.0
6 TraesCS3B01G515300 chr3B 97.260 73 0 2 3180 3251 827850163 827850234 4.400000e-24 122.0
7 TraesCS3B01G515300 chr3D 92.433 2022 104 25 723 2722 570496673 570494679 0.000000e+00 2841.0
8 TraesCS3B01G515300 chr3D 82.514 1281 194 22 992 2254 570393676 570394944 0.000000e+00 1098.0
9 TraesCS3B01G515300 chr3D 90.704 753 42 11 808 1543 570401541 570400800 0.000000e+00 977.0
10 TraesCS3B01G515300 chr3D 80.144 1254 209 28 1014 2250 520191904 520190674 0.000000e+00 900.0
11 TraesCS3B01G515300 chr3D 79.026 1273 223 32 1014 2253 570559200 570560461 0.000000e+00 832.0
12 TraesCS3B01G515300 chr3D 79.607 662 124 9 1599 2253 570400565 570399908 6.350000e-127 464.0
13 TraesCS3B01G515300 chr3D 96.825 63 2 0 718 780 570401601 570401539 4.440000e-19 106.0
14 TraesCS3B01G515300 chr3A 85.945 1551 177 22 724 2253 703304572 703303042 0.000000e+00 1618.0
15 TraesCS3B01G515300 chr3A 82.321 1284 191 27 992 2254 703270273 703271541 0.000000e+00 1081.0
16 TraesCS3B01G515300 chr3A 80.515 1242 202 27 1014 2238 655637062 655635844 0.000000e+00 917.0
17 TraesCS3B01G515300 chr3A 78.939 1244 221 34 1036 2251 703395197 703396427 0.000000e+00 808.0
18 TraesCS3B01G515300 chr3A 93.979 382 19 4 2799 3180 11819891 11820268 2.810000e-160 575.0
19 TraesCS3B01G515300 chr3A 98.611 72 1 0 3180 3251 642372968 642372897 9.470000e-26 128.0
20 TraesCS3B01G515300 chr3A 98.611 72 0 1 3180 3251 142927712 142927642 3.410000e-25 126.0
21 TraesCS3B01G515300 chr3A 97.222 72 1 1 3180 3251 557660447 557660377 1.580000e-23 121.0
22 TraesCS3B01G515300 chr6B 94.475 724 36 1 1 720 710955962 710956685 0.000000e+00 1112.0
23 TraesCS3B01G515300 chr4B 93.923 724 40 1 1 720 413162310 413161587 0.000000e+00 1090.0
24 TraesCS3B01G515300 chr4B 92.188 384 15 3 2799 3180 538697293 538697663 2.220000e-146 529.0
25 TraesCS3B01G515300 chr4B 91.146 384 19 3 2799 3180 275979821 275980191 1.040000e-139 507.0
26 TraesCS3B01G515300 chr7A 91.978 723 53 2 2 720 673905900 673905179 0.000000e+00 1009.0
27 TraesCS3B01G515300 chr7A 96.053 76 1 2 3177 3251 697180097 697180171 4.400000e-24 122.0
28 TraesCS3B01G515300 chr5D 85.210 737 89 3 4 720 496919988 496919252 0.000000e+00 739.0
29 TraesCS3B01G515300 chr5D 89.375 160 11 4 3015 3168 479389328 479389169 2.560000e-46 196.0
30 TraesCS3B01G515300 chr5D 88.750 160 12 4 3015 3168 371027545 371027704 1.190000e-44 191.0
31 TraesCS3B01G515300 chr2B 93.005 386 25 1 2797 3180 106132073 106131688 2.190000e-156 562.0
32 TraesCS3B01G515300 chr5B 91.645 383 18 2 2799 3180 696546076 696545707 4.810000e-143 518.0
33 TraesCS3B01G515300 chr1D 90.000 160 10 4 3015 3168 469876004 469876163 5.500000e-48 202.0
34 TraesCS3B01G515300 chr1D 92.683 41 2 1 2801 2841 99458586 99458625 1.260000e-04 58.4
35 TraesCS3B01G515300 chr7D 82.456 171 22 5 1469 1631 565060543 565060373 3.380000e-30 143.0
36 TraesCS3B01G515300 chr7D 84.722 144 15 4 2799 2941 556287938 556287801 1.570000e-28 137.0
37 TraesCS3B01G515300 chr5A 97.260 73 0 2 3180 3251 391970151 391970222 4.400000e-24 122.0
38 TraesCS3B01G515300 chr5A 97.222 72 1 1 3180 3251 379895740 379895810 1.580000e-23 121.0
39 TraesCS3B01G515300 chr4A 97.222 72 1 1 3180 3251 523052683 523052613 1.580000e-23 121.0
40 TraesCS3B01G515300 chr1B 97.222 72 1 1 3180 3251 191959858 191959788 1.580000e-23 121.0
41 TraesCS3B01G515300 chr6D 82.014 139 22 2 2797 2934 437546335 437546471 7.370000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G515300 chr3B 757771178 757774428 3250 True 6004.000000 6004 100.000000 1 3251 1 chr3B.!!$R1 3250
1 TraesCS3B01G515300 chr3B 757734142 757735407 1265 False 1075.000000 1075 82.252000 992 2252 1 chr3B.!!$F2 1260
2 TraesCS3B01G515300 chr3B 78600357 78601079 722 False 1050.000000 1050 92.946000 1 719 1 chr3B.!!$F1 718
3 TraesCS3B01G515300 chr3B 757807706 757808900 1194 False 824.000000 824 79.504000 1068 2253 1 chr3B.!!$F3 1185
4 TraesCS3B01G515300 chr3B 757738570 757740040 1470 True 791.000000 1332 90.034500 757 2251 2 chr3B.!!$R2 1494
5 TraesCS3B01G515300 chr3D 570494679 570496673 1994 True 2841.000000 2841 92.433000 723 2722 1 chr3D.!!$R2 1999
6 TraesCS3B01G515300 chr3D 570393676 570394944 1268 False 1098.000000 1098 82.514000 992 2254 1 chr3D.!!$F1 1262
7 TraesCS3B01G515300 chr3D 520190674 520191904 1230 True 900.000000 900 80.144000 1014 2250 1 chr3D.!!$R1 1236
8 TraesCS3B01G515300 chr3D 570559200 570560461 1261 False 832.000000 832 79.026000 1014 2253 1 chr3D.!!$F2 1239
9 TraesCS3B01G515300 chr3D 570399908 570401601 1693 True 515.666667 977 89.045333 718 2253 3 chr3D.!!$R3 1535
10 TraesCS3B01G515300 chr3A 703303042 703304572 1530 True 1618.000000 1618 85.945000 724 2253 1 chr3A.!!$R5 1529
11 TraesCS3B01G515300 chr3A 703270273 703271541 1268 False 1081.000000 1081 82.321000 992 2254 1 chr3A.!!$F2 1262
12 TraesCS3B01G515300 chr3A 655635844 655637062 1218 True 917.000000 917 80.515000 1014 2238 1 chr3A.!!$R4 1224
13 TraesCS3B01G515300 chr3A 703395197 703396427 1230 False 808.000000 808 78.939000 1036 2251 1 chr3A.!!$F3 1215
14 TraesCS3B01G515300 chr6B 710955962 710956685 723 False 1112.000000 1112 94.475000 1 720 1 chr6B.!!$F1 719
15 TraesCS3B01G515300 chr4B 413161587 413162310 723 True 1090.000000 1090 93.923000 1 720 1 chr4B.!!$R1 719
16 TraesCS3B01G515300 chr7A 673905179 673905900 721 True 1009.000000 1009 91.978000 2 720 1 chr7A.!!$R1 718
17 TraesCS3B01G515300 chr5D 496919252 496919988 736 True 739.000000 739 85.210000 4 720 1 chr5D.!!$R2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1044 0.320421 CCACCTGATCGACCGTTTGT 60.32 55.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2756 3040 0.030369 CGACGGCTACCATGTACTCC 59.97 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 277 1.338020 CTCCTTGCTCGGTTGCTTTTT 59.662 47.619 0.00 0.00 0.00 1.94
334 351 0.548510 GATCACCTTGCCTAAGCCCT 59.451 55.000 0.00 0.00 38.69 5.19
609 630 6.322201 TCCCCTTAATGAAAGCTGATTGATTC 59.678 38.462 0.00 0.00 33.49 2.52
614 635 4.994907 TGAAAGCTGATTGATTCATGGG 57.005 40.909 0.00 0.00 32.72 4.00
783 804 3.834858 CTCGCGCGCATGCATCTTC 62.835 63.158 32.61 0.00 42.97 2.87
801 822 3.259374 TCTTCATCTTCCTGTCCTGTGTC 59.741 47.826 0.00 0.00 0.00 3.67
837 861 7.362056 GGACAAGAATTTAACTATGAGCAGCAA 60.362 37.037 0.00 0.00 0.00 3.91
840 864 7.452880 AGAATTTAACTATGAGCAGCAAACA 57.547 32.000 0.00 0.00 0.00 2.83
928 952 6.138263 TCCGGAACCCACTATATAAAGAGAA 58.862 40.000 0.00 0.00 0.00 2.87
929 953 6.612456 TCCGGAACCCACTATATAAAGAGAAA 59.388 38.462 0.00 0.00 0.00 2.52
930 954 6.929606 CCGGAACCCACTATATAAAGAGAAAG 59.070 42.308 0.00 0.00 0.00 2.62
931 955 7.201974 CCGGAACCCACTATATAAAGAGAAAGA 60.202 40.741 0.00 0.00 0.00 2.52
932 956 8.202137 CGGAACCCACTATATAAAGAGAAAGAA 58.798 37.037 0.00 0.00 0.00 2.52
933 957 9.901172 GGAACCCACTATATAAAGAGAAAGAAA 57.099 33.333 0.00 0.00 0.00 2.52
948 972 4.863131 AGAAAGAAACATACGTCGATCCAC 59.137 41.667 0.00 0.00 0.00 4.02
950 974 3.508762 AGAAACATACGTCGATCCACAC 58.491 45.455 0.00 0.00 0.00 3.82
952 976 3.587797 AACATACGTCGATCCACACTT 57.412 42.857 0.00 0.00 0.00 3.16
988 1042 1.295423 CCCACCTGATCGACCGTTT 59.705 57.895 0.00 0.00 0.00 3.60
990 1044 0.320421 CCACCTGATCGACCGTTTGT 60.320 55.000 0.00 0.00 0.00 2.83
1071 1148 2.925170 AGCCAGAGTCTGCCGGTT 60.925 61.111 15.10 0.00 0.00 4.44
1218 1295 1.010125 CAAGTTCCCGTGCACGTTG 60.010 57.895 34.81 27.00 37.74 4.10
1369 1449 2.753043 GCCTCGACCGTACCAGGA 60.753 66.667 0.00 0.00 34.73 3.86
1631 1890 4.838152 CCCGCTCCACATCCACGG 62.838 72.222 0.00 0.00 43.44 4.94
1638 1897 2.347114 CACATCCACGGGCAGTCA 59.653 61.111 0.00 0.00 0.00 3.41
1691 1953 0.322456 CCGCTGGTCCAAAGGAATGA 60.322 55.000 6.45 0.00 31.38 2.57
1692 1954 1.533625 CGCTGGTCCAAAGGAATGAA 58.466 50.000 0.00 0.00 31.38 2.57
1695 1957 3.056607 CGCTGGTCCAAAGGAATGAAAAT 60.057 43.478 0.00 0.00 31.38 1.82
2169 2437 1.270907 ACTTCCTGCTGGAGTTCGAT 58.729 50.000 12.54 0.00 44.24 3.59
2265 2539 2.651455 GCCTAGACCGCCCTTTAATTT 58.349 47.619 0.00 0.00 0.00 1.82
2267 2541 2.357952 CCTAGACCGCCCTTTAATTTGC 59.642 50.000 0.00 0.00 0.00 3.68
2270 2544 0.246360 ACCGCCCTTTAATTTGCTGC 59.754 50.000 0.00 0.00 0.00 5.25
2272 2546 1.337635 CCGCCCTTTAATTTGCTGCAA 60.338 47.619 11.69 11.69 0.00 4.08
2353 2628 4.816385 CGGTTTAGAGCATCACCAATGTAT 59.184 41.667 0.00 0.00 37.82 2.29
2397 2672 8.583765 GCTTCGAATAAAATTTACATCACCAAC 58.416 33.333 0.00 0.00 0.00 3.77
2570 2846 9.093970 TCAAATGAATGTATCGAGACGTATTTT 57.906 29.630 5.15 3.77 0.00 1.82
2603 2879 3.250040 ACACCTGTTTGAGCGACAATAAC 59.750 43.478 0.00 0.00 38.36 1.89
2606 2882 4.083324 ACCTGTTTGAGCGACAATAACATG 60.083 41.667 0.00 0.00 38.36 3.21
2667 2951 8.397906 TGCCGATTTTATGAGATAGTGAAAAAG 58.602 33.333 0.00 0.00 0.00 2.27
2698 2982 9.314321 AGTGTTCATTACAGAATAATTACGAGG 57.686 33.333 0.00 0.00 37.45 4.63
2760 3044 9.116080 TGTCCTATATTATGAAATGGATGGAGT 57.884 33.333 0.00 0.00 0.00 3.85
2766 3050 9.690913 ATATTATGAAATGGATGGAGTACATGG 57.309 33.333 0.00 0.00 40.72 3.66
2767 3051 4.860802 TGAAATGGATGGAGTACATGGT 57.139 40.909 0.00 0.00 40.72 3.55
2768 3052 5.966853 TGAAATGGATGGAGTACATGGTA 57.033 39.130 0.00 0.00 40.72 3.25
2769 3053 5.928976 TGAAATGGATGGAGTACATGGTAG 58.071 41.667 0.00 0.00 40.72 3.18
2770 3054 4.357918 AATGGATGGAGTACATGGTAGC 57.642 45.455 0.00 0.00 40.72 3.58
2771 3055 2.047061 TGGATGGAGTACATGGTAGCC 58.953 52.381 0.00 0.00 40.72 3.93
2772 3056 1.000955 GGATGGAGTACATGGTAGCCG 59.999 57.143 0.00 0.00 40.72 5.52
2773 3057 1.687123 GATGGAGTACATGGTAGCCGT 59.313 52.381 0.00 0.00 40.72 5.68
2774 3058 1.108776 TGGAGTACATGGTAGCCGTC 58.891 55.000 0.00 0.00 0.00 4.79
2775 3059 0.030369 GGAGTACATGGTAGCCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
2776 3060 0.737219 GAGTACATGGTAGCCGTCGT 59.263 55.000 0.00 0.00 0.00 4.34
2777 3061 0.454600 AGTACATGGTAGCCGTCGTG 59.545 55.000 0.00 0.00 0.00 4.35
2778 3062 0.526954 GTACATGGTAGCCGTCGTGG 60.527 60.000 0.00 0.00 42.50 4.94
2791 3075 2.967397 CGTGGCCAACCTCGTCTA 59.033 61.111 7.24 0.00 45.62 2.59
2792 3076 1.153823 CGTGGCCAACCTCGTCTAG 60.154 63.158 7.24 0.00 45.62 2.43
2793 3077 1.874345 CGTGGCCAACCTCGTCTAGT 61.874 60.000 7.24 0.00 45.62 2.57
2794 3078 0.108756 GTGGCCAACCTCGTCTAGTC 60.109 60.000 7.24 0.00 36.63 2.59
2795 3079 0.541063 TGGCCAACCTCGTCTAGTCA 60.541 55.000 0.61 0.00 36.63 3.41
2796 3080 0.606604 GGCCAACCTCGTCTAGTCAA 59.393 55.000 0.00 0.00 0.00 3.18
2797 3081 1.207329 GGCCAACCTCGTCTAGTCAAT 59.793 52.381 0.00 0.00 0.00 2.57
2798 3082 2.429610 GGCCAACCTCGTCTAGTCAATA 59.570 50.000 0.00 0.00 0.00 1.90
2799 3083 3.445857 GCCAACCTCGTCTAGTCAATAC 58.554 50.000 0.00 0.00 0.00 1.89
2800 3084 3.130693 GCCAACCTCGTCTAGTCAATACT 59.869 47.826 0.00 0.00 39.91 2.12
2801 3085 4.337555 GCCAACCTCGTCTAGTCAATACTA 59.662 45.833 0.00 0.00 37.15 1.82
2813 3097 5.539582 AGTCAATACTAGATCGAGATCGC 57.460 43.478 10.07 0.00 42.48 4.58
2814 3098 4.092237 AGTCAATACTAGATCGAGATCGCG 59.908 45.833 13.06 13.06 42.48 5.87
2815 3099 3.095016 CAATACTAGATCGAGATCGCGC 58.905 50.000 14.47 0.00 42.48 6.86
2816 3100 1.077123 TACTAGATCGAGATCGCGCC 58.923 55.000 14.47 8.32 42.48 6.53
2817 3101 1.135731 CTAGATCGAGATCGCGCCC 59.864 63.158 14.47 7.97 42.48 6.13
2818 3102 1.302383 CTAGATCGAGATCGCGCCCT 61.302 60.000 14.47 14.49 42.48 5.19
2819 3103 1.578206 TAGATCGAGATCGCGCCCTG 61.578 60.000 14.47 0.00 42.48 4.45
2820 3104 3.905705 GATCGAGATCGCGCCCTGG 62.906 68.421 14.47 1.94 39.60 4.45
2840 3124 2.125552 CGAGGATGCCGCTCACAA 60.126 61.111 0.00 0.00 0.00 3.33
2841 3125 2.456119 CGAGGATGCCGCTCACAAC 61.456 63.158 0.00 0.00 0.00 3.32
2842 3126 2.434884 AGGATGCCGCTCACAACG 60.435 61.111 0.00 0.00 0.00 4.10
2843 3127 2.742372 GGATGCCGCTCACAACGT 60.742 61.111 0.00 0.00 0.00 3.99
2844 3128 2.325082 GGATGCCGCTCACAACGTT 61.325 57.895 0.00 0.00 0.00 3.99
2845 3129 1.574428 GATGCCGCTCACAACGTTT 59.426 52.632 0.00 0.00 0.00 3.60
2846 3130 0.040425 GATGCCGCTCACAACGTTTT 60.040 50.000 0.00 0.00 0.00 2.43
2847 3131 0.317770 ATGCCGCTCACAACGTTTTG 60.318 50.000 8.14 8.14 38.83 2.44
2848 3132 1.657181 GCCGCTCACAACGTTTTGG 60.657 57.895 14.09 6.58 37.00 3.28
2849 3133 1.725066 CCGCTCACAACGTTTTGGT 59.275 52.632 14.09 0.00 37.00 3.67
2850 3134 0.316689 CCGCTCACAACGTTTTGGTC 60.317 55.000 14.09 5.84 37.00 4.02
2851 3135 0.375454 CGCTCACAACGTTTTGGTCA 59.625 50.000 14.09 0.00 37.00 4.02
2852 3136 1.202087 CGCTCACAACGTTTTGGTCAA 60.202 47.619 14.09 0.00 37.00 3.18
2853 3137 2.729467 CGCTCACAACGTTTTGGTCAAA 60.729 45.455 14.09 0.00 37.00 2.69
2854 3138 2.851824 GCTCACAACGTTTTGGTCAAAG 59.148 45.455 14.09 5.34 37.00 2.77
2855 3139 3.426963 GCTCACAACGTTTTGGTCAAAGA 60.427 43.478 14.09 0.00 37.00 2.52
2856 3140 4.342772 CTCACAACGTTTTGGTCAAAGAG 58.657 43.478 14.09 2.14 37.00 2.85
2857 3141 4.004314 TCACAACGTTTTGGTCAAAGAGA 58.996 39.130 14.09 0.00 37.00 3.10
2858 3142 4.638421 TCACAACGTTTTGGTCAAAGAGAT 59.362 37.500 14.09 0.00 37.00 2.75
2859 3143 5.818336 TCACAACGTTTTGGTCAAAGAGATA 59.182 36.000 14.09 0.00 37.00 1.98
2860 3144 6.316640 TCACAACGTTTTGGTCAAAGAGATAA 59.683 34.615 14.09 0.00 37.00 1.75
2861 3145 6.413818 CACAACGTTTTGGTCAAAGAGATAAC 59.586 38.462 6.54 0.00 37.00 1.89
2862 3146 5.338614 ACGTTTTGGTCAAAGAGATAACG 57.661 39.130 11.86 11.86 34.88 3.18
2863 3147 4.148891 CGTTTTGGTCAAAGAGATAACGC 58.851 43.478 0.00 0.00 0.00 4.84
2864 3148 4.084013 CGTTTTGGTCAAAGAGATAACGCT 60.084 41.667 0.00 0.00 0.00 5.07
2865 3149 5.119588 CGTTTTGGTCAAAGAGATAACGCTA 59.880 40.000 0.00 0.00 0.00 4.26
2866 3150 6.347079 CGTTTTGGTCAAAGAGATAACGCTAA 60.347 38.462 0.00 0.00 0.00 3.09
2867 3151 6.721571 TTTGGTCAAAGAGATAACGCTAAG 57.278 37.500 0.00 0.00 0.00 2.18
2868 3152 5.401531 TGGTCAAAGAGATAACGCTAAGT 57.598 39.130 0.00 0.00 0.00 2.24
2869 3153 5.790593 TGGTCAAAGAGATAACGCTAAGTT 58.209 37.500 0.00 0.00 46.36 2.66
2883 3167 7.787725 AACGCTAAGTTAATAGGAATTCAGG 57.212 36.000 7.93 0.00 42.14 3.86
2884 3168 6.885922 ACGCTAAGTTAATAGGAATTCAGGT 58.114 36.000 7.93 0.00 0.00 4.00
2885 3169 8.015185 ACGCTAAGTTAATAGGAATTCAGGTA 57.985 34.615 7.93 0.00 0.00 3.08
2886 3170 8.648693 ACGCTAAGTTAATAGGAATTCAGGTAT 58.351 33.333 7.93 0.00 0.00 2.73
2895 3179 8.970859 AATAGGAATTCAGGTATAGCATATGC 57.029 34.615 20.36 20.36 42.49 3.14
2896 3180 6.378661 AGGAATTCAGGTATAGCATATGCA 57.621 37.500 28.62 15.27 45.16 3.96
2897 3181 6.966751 AGGAATTCAGGTATAGCATATGCAT 58.033 36.000 28.62 20.43 45.16 3.96
2898 3182 7.408543 AGGAATTCAGGTATAGCATATGCATT 58.591 34.615 28.62 17.41 45.16 3.56
2899 3183 7.555554 AGGAATTCAGGTATAGCATATGCATTC 59.444 37.037 28.62 21.76 45.16 2.67
2900 3184 7.337689 GGAATTCAGGTATAGCATATGCATTCA 59.662 37.037 28.62 11.56 45.16 2.57
2901 3185 8.818622 AATTCAGGTATAGCATATGCATTCAT 57.181 30.769 28.62 17.19 45.16 2.57
2902 3186 9.910267 AATTCAGGTATAGCATATGCATTCATA 57.090 29.630 28.62 16.29 45.16 2.15
2903 3187 8.722480 TTCAGGTATAGCATATGCATTCATAC 57.278 34.615 28.62 24.16 45.16 2.39
2904 3188 7.850193 TCAGGTATAGCATATGCATTCATACA 58.150 34.615 28.62 11.48 45.16 2.29
2905 3189 7.983484 TCAGGTATAGCATATGCATTCATACAG 59.017 37.037 28.62 20.70 45.16 2.74
2906 3190 7.226128 CAGGTATAGCATATGCATTCATACAGG 59.774 40.741 28.62 18.01 45.16 4.00
2907 3191 7.126268 AGGTATAGCATATGCATTCATACAGGA 59.874 37.037 28.62 0.96 45.16 3.86
2908 3192 7.935755 GGTATAGCATATGCATTCATACAGGAT 59.064 37.037 28.62 6.48 45.16 3.24
2909 3193 9.987272 GTATAGCATATGCATTCATACAGGATA 57.013 33.333 28.62 8.50 45.16 2.59
2911 3195 7.621428 AGCATATGCATTCATACAGGATAAC 57.379 36.000 28.62 0.00 45.16 1.89
2912 3196 7.170277 AGCATATGCATTCATACAGGATAACA 58.830 34.615 28.62 0.00 45.16 2.41
2913 3197 7.666804 AGCATATGCATTCATACAGGATAACAA 59.333 33.333 28.62 0.00 45.16 2.83
2914 3198 8.464404 GCATATGCATTCATACAGGATAACAAT 58.536 33.333 22.84 0.00 37.94 2.71
2919 3203 8.352201 TGCATTCATACAGGATAACAATAAAGC 58.648 33.333 0.00 0.00 0.00 3.51
2920 3204 7.535258 GCATTCATACAGGATAACAATAAAGCG 59.465 37.037 0.00 0.00 0.00 4.68
2921 3205 8.773645 CATTCATACAGGATAACAATAAAGCGA 58.226 33.333 0.00 0.00 0.00 4.93
2922 3206 8.725405 TTCATACAGGATAACAATAAAGCGAA 57.275 30.769 0.00 0.00 0.00 4.70
2923 3207 8.365399 TCATACAGGATAACAATAAAGCGAAG 57.635 34.615 0.00 0.00 0.00 3.79
2924 3208 8.201464 TCATACAGGATAACAATAAAGCGAAGA 58.799 33.333 0.00 0.00 0.00 2.87
2925 3209 8.826710 CATACAGGATAACAATAAAGCGAAGAA 58.173 33.333 0.00 0.00 0.00 2.52
2926 3210 7.308782 ACAGGATAACAATAAAGCGAAGAAG 57.691 36.000 0.00 0.00 0.00 2.85
2927 3211 7.103641 ACAGGATAACAATAAAGCGAAGAAGA 58.896 34.615 0.00 0.00 0.00 2.87
2928 3212 7.606456 ACAGGATAACAATAAAGCGAAGAAGAA 59.394 33.333 0.00 0.00 0.00 2.52
2929 3213 8.450964 CAGGATAACAATAAAGCGAAGAAGAAA 58.549 33.333 0.00 0.00 0.00 2.52
2930 3214 8.451748 AGGATAACAATAAAGCGAAGAAGAAAC 58.548 33.333 0.00 0.00 0.00 2.78
2931 3215 8.234546 GGATAACAATAAAGCGAAGAAGAAACA 58.765 33.333 0.00 0.00 0.00 2.83
2932 3216 9.774742 GATAACAATAAAGCGAAGAAGAAACAT 57.225 29.630 0.00 0.00 0.00 2.71
2934 3218 8.871686 AACAATAAAGCGAAGAAGAAACATTT 57.128 26.923 0.00 0.00 0.00 2.32
2935 3219 9.959749 AACAATAAAGCGAAGAAGAAACATTTA 57.040 25.926 0.00 0.00 0.00 1.40
2936 3220 9.959749 ACAATAAAGCGAAGAAGAAACATTTAA 57.040 25.926 0.00 0.00 0.00 1.52
2941 3225 8.871686 AAGCGAAGAAGAAACATTTAAATTGT 57.128 26.923 0.00 0.00 0.00 2.71
2942 3226 8.285776 AGCGAAGAAGAAACATTTAAATTGTG 57.714 30.769 0.00 0.00 0.00 3.33
2943 3227 8.134895 AGCGAAGAAGAAACATTTAAATTGTGA 58.865 29.630 0.00 0.00 0.00 3.58
2944 3228 8.915654 GCGAAGAAGAAACATTTAAATTGTGAT 58.084 29.630 0.00 0.00 0.00 3.06
2951 3235 9.860898 AGAAACATTTAAATTGTGATAGGAAGC 57.139 29.630 0.00 0.00 0.00 3.86
2952 3236 9.638239 GAAACATTTAAATTGTGATAGGAAGCA 57.362 29.630 0.00 0.00 0.00 3.91
2953 3237 8.986477 AACATTTAAATTGTGATAGGAAGCAC 57.014 30.769 0.00 0.00 42.47 4.40
2959 3243 3.057969 TGTGATAGGAAGCACACCTTG 57.942 47.619 0.00 0.00 46.59 3.61
2960 3244 2.290260 TGTGATAGGAAGCACACCTTGG 60.290 50.000 0.00 0.00 46.59 3.61
2961 3245 1.340017 TGATAGGAAGCACACCTTGGC 60.340 52.381 0.00 0.00 38.76 4.52
2962 3246 0.995024 ATAGGAAGCACACCTTGGCT 59.005 50.000 0.00 0.00 43.46 4.75
2963 3247 1.651737 TAGGAAGCACACCTTGGCTA 58.348 50.000 0.00 0.00 40.01 3.93
2964 3248 0.036875 AGGAAGCACACCTTGGCTAC 59.963 55.000 0.00 0.00 40.01 3.58
2965 3249 0.960861 GGAAGCACACCTTGGCTACC 60.961 60.000 0.00 0.00 40.01 3.18
2966 3250 0.250727 GAAGCACACCTTGGCTACCA 60.251 55.000 0.00 0.00 40.01 3.25
2967 3251 0.537371 AAGCACACCTTGGCTACCAC 60.537 55.000 0.00 0.00 40.01 4.16
2968 3252 1.228124 GCACACCTTGGCTACCACA 60.228 57.895 0.00 0.00 30.78 4.17
2969 3253 0.609131 GCACACCTTGGCTACCACAT 60.609 55.000 0.00 0.00 30.78 3.21
2970 3254 1.167851 CACACCTTGGCTACCACATG 58.832 55.000 0.00 0.00 30.78 3.21
2971 3255 1.064003 ACACCTTGGCTACCACATGA 58.936 50.000 0.00 0.00 30.78 3.07
2972 3256 1.271379 ACACCTTGGCTACCACATGAC 60.271 52.381 0.00 0.00 30.78 3.06
2973 3257 1.064003 ACCTTGGCTACCACATGACA 58.936 50.000 0.00 0.00 30.78 3.58
2974 3258 1.635487 ACCTTGGCTACCACATGACAT 59.365 47.619 0.00 0.00 30.78 3.06
2975 3259 2.843730 ACCTTGGCTACCACATGACATA 59.156 45.455 0.00 0.00 30.78 2.29
2976 3260 3.459598 ACCTTGGCTACCACATGACATAT 59.540 43.478 0.00 0.00 30.78 1.78
2977 3261 3.817084 CCTTGGCTACCACATGACATATG 59.183 47.826 0.00 0.00 30.78 1.78
2978 3262 4.454678 CTTGGCTACCACATGACATATGT 58.545 43.478 8.43 8.43 30.78 2.29
2979 3263 4.502105 TGGCTACCACATGACATATGTT 57.498 40.909 10.30 0.00 0.00 2.71
2980 3264 4.198530 TGGCTACCACATGACATATGTTG 58.801 43.478 10.30 7.89 0.00 3.33
2981 3265 4.199310 GGCTACCACATGACATATGTTGT 58.801 43.478 10.30 8.57 42.79 3.32
2982 3266 5.104735 TGGCTACCACATGACATATGTTGTA 60.105 40.000 10.30 0.36 39.18 2.41
2983 3267 5.820423 GGCTACCACATGACATATGTTGTAA 59.180 40.000 10.30 0.00 39.18 2.41
2984 3268 6.017934 GGCTACCACATGACATATGTTGTAAG 60.018 42.308 10.30 10.11 39.18 2.34
2985 3269 5.818136 ACCACATGACATATGTTGTAAGC 57.182 39.130 10.30 0.00 39.18 3.09
2986 3270 5.252547 ACCACATGACATATGTTGTAAGCA 58.747 37.500 10.30 2.37 39.18 3.91
2987 3271 5.709631 ACCACATGACATATGTTGTAAGCAA 59.290 36.000 10.30 0.00 39.18 3.91
2988 3272 6.377996 ACCACATGACATATGTTGTAAGCAAT 59.622 34.615 10.30 0.00 39.18 3.56
2989 3273 7.093814 ACCACATGACATATGTTGTAAGCAATT 60.094 33.333 10.30 0.00 39.18 2.32
2990 3274 7.433131 CCACATGACATATGTTGTAAGCAATTC 59.567 37.037 10.30 0.00 39.18 2.17
2991 3275 7.969508 CACATGACATATGTTGTAAGCAATTCA 59.030 33.333 10.30 0.00 39.18 2.57
2992 3276 8.522003 ACATGACATATGTTGTAAGCAATTCAA 58.478 29.630 10.30 0.00 39.18 2.69
2993 3277 9.356433 CATGACATATGTTGTAAGCAATTCAAA 57.644 29.630 10.30 0.00 39.18 2.69
2994 3278 8.741101 TGACATATGTTGTAAGCAATTCAAAC 57.259 30.769 10.30 0.00 39.18 2.93
2995 3279 8.575589 TGACATATGTTGTAAGCAATTCAAACT 58.424 29.630 10.30 0.00 39.18 2.66
3020 3304 3.272766 AAAAAGAAAGCACGCCAGC 57.727 47.368 0.00 0.00 0.00 4.85
3022 3306 1.604604 AAAAGAAAGCACGCCAGCTA 58.395 45.000 0.00 0.00 45.89 3.32
3023 3307 0.875059 AAAGAAAGCACGCCAGCTAC 59.125 50.000 0.00 0.00 45.89 3.58
3024 3308 0.250295 AAGAAAGCACGCCAGCTACA 60.250 50.000 0.00 0.00 45.89 2.74
3025 3309 0.036010 AGAAAGCACGCCAGCTACAT 60.036 50.000 0.00 0.00 45.89 2.29
3026 3310 0.097674 GAAAGCACGCCAGCTACATG 59.902 55.000 0.00 0.00 45.89 3.21
3027 3311 1.926511 AAAGCACGCCAGCTACATGC 61.927 55.000 0.00 0.00 45.89 4.06
3028 3312 3.880846 GCACGCCAGCTACATGCC 61.881 66.667 0.00 0.00 44.23 4.40
3029 3313 2.124983 CACGCCAGCTACATGCCT 60.125 61.111 0.00 0.00 44.23 4.75
3030 3314 2.176273 CACGCCAGCTACATGCCTC 61.176 63.158 0.00 0.00 44.23 4.70
3031 3315 2.187685 CGCCAGCTACATGCCTCA 59.812 61.111 0.00 0.00 44.23 3.86
3032 3316 1.886313 CGCCAGCTACATGCCTCAG 60.886 63.158 0.00 0.00 44.23 3.35
3033 3317 1.525535 GCCAGCTACATGCCTCAGG 60.526 63.158 0.00 0.00 44.23 3.86
3034 3318 1.910722 CCAGCTACATGCCTCAGGT 59.089 57.895 0.00 0.00 44.23 4.00
3035 3319 0.463295 CCAGCTACATGCCTCAGGTG 60.463 60.000 0.00 1.12 44.23 4.00
3036 3320 1.094073 CAGCTACATGCCTCAGGTGC 61.094 60.000 0.00 0.00 44.23 5.01
3037 3321 1.222936 GCTACATGCCTCAGGTGCT 59.777 57.895 0.00 0.00 35.15 4.40
3038 3322 0.465705 GCTACATGCCTCAGGTGCTA 59.534 55.000 0.00 0.00 35.15 3.49
3039 3323 1.134401 GCTACATGCCTCAGGTGCTAA 60.134 52.381 0.00 0.00 35.15 3.09
3040 3324 2.486191 GCTACATGCCTCAGGTGCTAAT 60.486 50.000 0.00 0.00 35.15 1.73
3041 3325 2.338577 ACATGCCTCAGGTGCTAATC 57.661 50.000 0.00 0.00 0.00 1.75
3042 3326 1.561076 ACATGCCTCAGGTGCTAATCA 59.439 47.619 0.00 0.00 0.00 2.57
3043 3327 2.025981 ACATGCCTCAGGTGCTAATCAA 60.026 45.455 0.00 0.00 0.00 2.57
3044 3328 2.877097 TGCCTCAGGTGCTAATCAAA 57.123 45.000 0.00 0.00 0.00 2.69
3045 3329 2.436417 TGCCTCAGGTGCTAATCAAAC 58.564 47.619 0.00 0.00 0.00 2.93
3046 3330 2.224744 TGCCTCAGGTGCTAATCAAACA 60.225 45.455 0.00 0.00 0.00 2.83
3047 3331 2.162408 GCCTCAGGTGCTAATCAAACAC 59.838 50.000 0.00 0.00 0.00 3.32
3048 3332 3.679389 CCTCAGGTGCTAATCAAACACT 58.321 45.455 0.00 0.00 34.70 3.55
3049 3333 4.074970 CCTCAGGTGCTAATCAAACACTT 58.925 43.478 0.00 0.00 34.70 3.16
3050 3334 4.083110 CCTCAGGTGCTAATCAAACACTTG 60.083 45.833 0.00 0.00 41.30 3.16
3051 3335 3.820467 TCAGGTGCTAATCAAACACTTGG 59.180 43.478 4.92 0.00 40.59 3.61
3052 3336 3.569701 CAGGTGCTAATCAAACACTTGGT 59.430 43.478 0.00 0.00 37.64 3.67
3053 3337 4.759693 CAGGTGCTAATCAAACACTTGGTA 59.240 41.667 0.00 0.00 37.64 3.25
3054 3338 5.415701 CAGGTGCTAATCAAACACTTGGTAT 59.584 40.000 0.00 0.00 37.64 2.73
3055 3339 6.010219 AGGTGCTAATCAAACACTTGGTATT 58.990 36.000 0.00 0.00 34.70 1.89
3056 3340 6.493458 AGGTGCTAATCAAACACTTGGTATTT 59.507 34.615 0.00 0.00 34.70 1.40
3057 3341 6.806739 GGTGCTAATCAAACACTTGGTATTTC 59.193 38.462 0.00 0.00 34.70 2.17
3058 3342 7.367285 GTGCTAATCAAACACTTGGTATTTCA 58.633 34.615 0.00 0.00 33.01 2.69
3059 3343 8.028938 GTGCTAATCAAACACTTGGTATTTCAT 58.971 33.333 0.00 0.00 33.01 2.57
3060 3344 9.237187 TGCTAATCAAACACTTGGTATTTCATA 57.763 29.630 0.00 0.00 33.01 2.15
3065 3349 8.335532 TCAAACACTTGGTATTTCATAAGAGG 57.664 34.615 0.00 0.00 33.01 3.69
3066 3350 7.942341 TCAAACACTTGGTATTTCATAAGAGGT 59.058 33.333 0.00 0.00 33.01 3.85
3067 3351 9.226606 CAAACACTTGGTATTTCATAAGAGGTA 57.773 33.333 0.00 0.00 0.00 3.08
3068 3352 8.788325 AACACTTGGTATTTCATAAGAGGTAC 57.212 34.615 0.00 0.00 0.00 3.34
3069 3353 7.336396 ACACTTGGTATTTCATAAGAGGTACC 58.664 38.462 2.73 2.73 36.71 3.34
3070 3354 7.037873 ACACTTGGTATTTCATAAGAGGTACCA 60.038 37.037 15.94 8.58 40.65 3.25
3071 3355 7.495934 CACTTGGTATTTCATAAGAGGTACCAG 59.504 40.741 15.94 0.00 41.96 4.00
3072 3356 5.925509 TGGTATTTCATAAGAGGTACCAGC 58.074 41.667 15.94 5.62 39.04 4.85
3073 3357 5.665812 TGGTATTTCATAAGAGGTACCAGCT 59.334 40.000 15.94 8.14 39.04 4.24
3074 3358 6.842280 TGGTATTTCATAAGAGGTACCAGCTA 59.158 38.462 15.94 1.87 39.04 3.32
3075 3359 7.015292 TGGTATTTCATAAGAGGTACCAGCTAG 59.985 40.741 15.94 5.29 39.04 3.42
3076 3360 4.939052 TTCATAAGAGGTACCAGCTAGC 57.061 45.455 15.94 6.62 0.00 3.42
3077 3361 3.910989 TCATAAGAGGTACCAGCTAGCA 58.089 45.455 18.83 0.00 0.00 3.49
3078 3362 3.891977 TCATAAGAGGTACCAGCTAGCAG 59.108 47.826 18.83 9.15 0.00 4.24
3079 3363 2.534042 AAGAGGTACCAGCTAGCAGA 57.466 50.000 18.83 0.00 0.00 4.26
3080 3364 2.534042 AGAGGTACCAGCTAGCAGAA 57.466 50.000 18.83 0.00 0.00 3.02
3081 3365 2.104170 AGAGGTACCAGCTAGCAGAAC 58.896 52.381 18.83 10.40 0.00 3.01
3082 3366 1.825474 GAGGTACCAGCTAGCAGAACA 59.175 52.381 18.83 0.00 0.00 3.18
3083 3367 2.233922 GAGGTACCAGCTAGCAGAACAA 59.766 50.000 18.83 0.00 0.00 2.83
3084 3368 2.028020 AGGTACCAGCTAGCAGAACAAC 60.028 50.000 18.83 6.93 0.00 3.32
3085 3369 2.289444 GGTACCAGCTAGCAGAACAACA 60.289 50.000 18.83 0.00 0.00 3.33
3086 3370 2.175878 ACCAGCTAGCAGAACAACAG 57.824 50.000 18.83 0.00 0.00 3.16
3087 3371 0.801251 CCAGCTAGCAGAACAACAGC 59.199 55.000 18.83 0.00 0.00 4.40
3088 3372 1.610102 CCAGCTAGCAGAACAACAGCT 60.610 52.381 18.83 0.00 43.16 4.24
3089 3373 2.149578 CAGCTAGCAGAACAACAGCTT 58.850 47.619 18.83 0.00 40.50 3.74
3090 3374 2.095869 CAGCTAGCAGAACAACAGCTTG 60.096 50.000 18.83 0.00 40.50 4.01
3091 3375 1.400759 GCTAGCAGAACAACAGCTTGC 60.401 52.381 10.63 0.00 46.72 4.01
3092 3376 1.875514 CTAGCAGAACAACAGCTTGCA 59.124 47.619 7.03 0.00 41.44 4.08
3093 3377 1.325355 AGCAGAACAACAGCTTGCAT 58.675 45.000 7.03 0.00 38.14 3.96
3094 3378 1.268899 AGCAGAACAACAGCTTGCATC 59.731 47.619 7.03 0.00 38.14 3.91
3095 3379 1.668047 GCAGAACAACAGCTTGCATCC 60.668 52.381 0.00 0.00 0.00 3.51
3096 3380 1.610038 CAGAACAACAGCTTGCATCCA 59.390 47.619 0.00 0.00 0.00 3.41
3097 3381 2.034939 CAGAACAACAGCTTGCATCCAA 59.965 45.455 0.00 0.00 0.00 3.53
3099 3383 0.963962 ACAACAGCTTGCATCCAAGG 59.036 50.000 0.00 0.00 46.77 3.61
3100 3384 0.389426 CAACAGCTTGCATCCAAGGC 60.389 55.000 0.00 0.00 46.77 4.35
3101 3385 0.828762 AACAGCTTGCATCCAAGGCA 60.829 50.000 0.00 0.00 46.77 4.75
3102 3386 0.828762 ACAGCTTGCATCCAAGGCAA 60.829 50.000 0.00 0.00 46.77 4.52
3112 3396 7.838079 TTGCATCCAAGGCAATATAATAAGT 57.162 32.000 0.00 0.00 45.57 2.24
3113 3397 7.218228 TGCATCCAAGGCAATATAATAAGTG 57.782 36.000 0.00 0.00 38.54 3.16
3114 3398 6.095377 GCATCCAAGGCAATATAATAAGTGC 58.905 40.000 0.00 0.00 36.24 4.40
3134 3418 7.782897 AGTGCCTCTAATATATGTAGCTTCA 57.217 36.000 0.00 0.00 0.00 3.02
3135 3419 8.195165 AGTGCCTCTAATATATGTAGCTTCAA 57.805 34.615 0.00 0.00 0.00 2.69
3136 3420 8.091449 AGTGCCTCTAATATATGTAGCTTCAAC 58.909 37.037 0.00 0.00 0.00 3.18
3137 3421 7.872993 GTGCCTCTAATATATGTAGCTTCAACA 59.127 37.037 0.00 0.00 0.00 3.33
3138 3422 8.597167 TGCCTCTAATATATGTAGCTTCAACAT 58.403 33.333 5.92 5.92 40.57 2.71
3139 3423 9.442047 GCCTCTAATATATGTAGCTTCAACATT 57.558 33.333 5.94 4.76 38.49 2.71
3150 3434 9.836864 ATGTAGCTTCAACATTGATAAGTATGA 57.163 29.630 0.00 0.00 37.00 2.15
3151 3435 9.317936 TGTAGCTTCAACATTGATAAGTATGAG 57.682 33.333 0.00 0.00 37.00 2.90
3152 3436 7.256756 AGCTTCAACATTGATAAGTATGAGC 57.743 36.000 0.00 0.00 37.00 4.26
3153 3437 6.825213 AGCTTCAACATTGATAAGTATGAGCA 59.175 34.615 11.28 0.00 37.00 4.26
3154 3438 7.337689 AGCTTCAACATTGATAAGTATGAGCAA 59.662 33.333 11.28 0.00 37.00 3.91
3155 3439 8.133627 GCTTCAACATTGATAAGTATGAGCAAT 58.866 33.333 0.00 0.00 35.52 3.56
3157 3441 9.791820 TTCAACATTGATAAGTATGAGCAATTG 57.208 29.630 0.00 0.00 31.98 2.32
3158 3442 8.959548 TCAACATTGATAAGTATGAGCAATTGT 58.040 29.630 7.40 0.00 31.98 2.71
3161 3445 9.394767 ACATTGATAAGTATGAGCAATTGTACA 57.605 29.630 7.40 8.10 31.98 2.90
3180 3464 4.418337 AAAAAGCACTGCCAACGC 57.582 50.000 0.00 0.00 0.00 4.84
3181 3465 1.515020 AAAAAGCACTGCCAACGCA 59.485 47.368 0.00 0.00 44.78 5.24
3195 3479 1.080705 ACGCAGTTGGTAGTCTCGC 60.081 57.895 0.00 0.00 37.78 5.03
3196 3480 1.213013 CGCAGTTGGTAGTCTCGCT 59.787 57.895 0.00 0.00 0.00 4.93
3197 3481 0.388649 CGCAGTTGGTAGTCTCGCTT 60.389 55.000 0.00 0.00 0.00 4.68
3198 3482 1.797025 GCAGTTGGTAGTCTCGCTTT 58.203 50.000 0.00 0.00 0.00 3.51
3199 3483 1.727335 GCAGTTGGTAGTCTCGCTTTC 59.273 52.381 0.00 0.00 0.00 2.62
3200 3484 2.866460 GCAGTTGGTAGTCTCGCTTTCA 60.866 50.000 0.00 0.00 0.00 2.69
3201 3485 2.989840 CAGTTGGTAGTCTCGCTTTCAG 59.010 50.000 0.00 0.00 0.00 3.02
3202 3486 2.028930 AGTTGGTAGTCTCGCTTTCAGG 60.029 50.000 0.00 0.00 0.00 3.86
3203 3487 1.629043 TGGTAGTCTCGCTTTCAGGT 58.371 50.000 0.00 0.00 0.00 4.00
3204 3488 1.968493 TGGTAGTCTCGCTTTCAGGTT 59.032 47.619 0.00 0.00 0.00 3.50
3205 3489 2.367567 TGGTAGTCTCGCTTTCAGGTTT 59.632 45.455 0.00 0.00 0.00 3.27
3206 3490 3.181458 TGGTAGTCTCGCTTTCAGGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
3207 3491 3.813724 GGTAGTCTCGCTTTCAGGTTTTT 59.186 43.478 0.00 0.00 0.00 1.94
3227 3511 1.301423 TTTTCGTCCCACCACTTTCG 58.699 50.000 0.00 0.00 0.00 3.46
3228 3512 0.178533 TTTCGTCCCACCACTTTCGT 59.821 50.000 0.00 0.00 0.00 3.85
3229 3513 0.249573 TTCGTCCCACCACTTTCGTC 60.250 55.000 0.00 0.00 0.00 4.20
3230 3514 1.666872 CGTCCCACCACTTTCGTCC 60.667 63.158 0.00 0.00 0.00 4.79
3231 3515 1.666872 GTCCCACCACTTTCGTCCG 60.667 63.158 0.00 0.00 0.00 4.79
3232 3516 2.358247 CCCACCACTTTCGTCCGG 60.358 66.667 0.00 0.00 0.00 5.14
3233 3517 2.358247 CCACCACTTTCGTCCGGG 60.358 66.667 0.00 0.00 0.00 5.73
3234 3518 2.424302 CACCACTTTCGTCCGGGT 59.576 61.111 0.00 0.00 0.00 5.28
3235 3519 1.227734 CACCACTTTCGTCCGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
3236 3520 0.816421 CACCACTTTCGTCCGGGTTT 60.816 55.000 0.00 0.00 0.00 3.27
3237 3521 0.107066 ACCACTTTCGTCCGGGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
3238 3522 1.026584 CCACTTTCGTCCGGGTTTTT 58.973 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 250 3.399330 CAACCGAGCAAGGAGTTCTTAA 58.601 45.455 4.39 0.00 33.68 1.85
238 255 0.179018 AAGCAACCGAGCAAGGAGTT 60.179 50.000 4.39 0.00 36.85 3.01
260 277 2.191400 CTCCCTCACTTCCATCCTCAA 58.809 52.381 0.00 0.00 0.00 3.02
334 351 0.446222 GGCGCTTTCGACATGCTAAA 59.554 50.000 7.64 0.00 44.84 1.85
609 630 0.176449 TGTCTGAGATCGTGCCCATG 59.824 55.000 0.00 0.00 0.00 3.66
614 635 0.526310 TCGCATGTCTGAGATCGTGC 60.526 55.000 14.88 14.88 41.43 5.34
672 693 1.434696 CTTGCCCCATAGCTTTGCG 59.565 57.895 0.00 0.00 0.00 4.85
783 804 1.404717 CGGACACAGGACAGGAAGATG 60.405 57.143 0.00 0.00 0.00 2.90
801 822 2.332063 ATTCTTGTCCTATGTGGCGG 57.668 50.000 0.00 0.00 35.26 6.13
837 861 1.658673 GACTCGACGGTGACCTGTT 59.341 57.895 0.00 0.00 0.00 3.16
840 864 3.054503 CGGACTCGACGGTGACCT 61.055 66.667 0.00 0.00 39.00 3.85
928 952 3.924686 GTGTGGATCGACGTATGTTTCTT 59.075 43.478 3.26 0.00 0.00 2.52
929 953 3.192844 AGTGTGGATCGACGTATGTTTCT 59.807 43.478 3.26 0.00 0.00 2.52
930 954 3.508762 AGTGTGGATCGACGTATGTTTC 58.491 45.455 3.26 0.00 0.00 2.78
931 955 3.587797 AGTGTGGATCGACGTATGTTT 57.412 42.857 3.26 0.00 0.00 2.83
932 956 3.587797 AAGTGTGGATCGACGTATGTT 57.412 42.857 3.26 0.00 0.00 2.71
933 957 3.943381 TCTAAGTGTGGATCGACGTATGT 59.057 43.478 3.26 0.00 0.00 2.29
934 958 4.547406 TCTAAGTGTGGATCGACGTATG 57.453 45.455 3.26 0.00 0.00 2.39
935 959 5.338365 GTTTCTAAGTGTGGATCGACGTAT 58.662 41.667 3.26 0.00 0.00 3.06
936 960 4.379813 GGTTTCTAAGTGTGGATCGACGTA 60.380 45.833 3.26 0.00 0.00 3.57
948 972 3.191371 GGCTGTGGATTGGTTTCTAAGTG 59.809 47.826 0.00 0.00 0.00 3.16
950 974 2.755103 GGGCTGTGGATTGGTTTCTAAG 59.245 50.000 0.00 0.00 0.00 2.18
952 976 1.005450 GGGGCTGTGGATTGGTTTCTA 59.995 52.381 0.00 0.00 0.00 2.10
990 1044 1.630369 ACTAGTGCCATCTTCCTTGCA 59.370 47.619 0.00 0.00 0.00 4.08
1580 1660 2.435938 CCACGCCATTGCCGTAGT 60.436 61.111 0.00 0.00 37.12 2.73
1638 1897 2.102554 CTGCGTCCAGTCGATCTCT 58.897 57.895 0.00 0.00 34.31 3.10
1665 1924 3.869473 TTGGACCAGCGGCGTGTAC 62.869 63.158 9.37 5.15 0.00 2.90
1691 1953 3.481661 CGCTGTACGCCGGATTTT 58.518 55.556 5.05 0.00 34.21 1.82
2169 2437 1.410517 CCGAGCTGCTTCTTCTCCATA 59.589 52.381 2.53 0.00 0.00 2.74
2374 2649 9.967346 TTTGTTGGTGATGTAAATTTTATTCGA 57.033 25.926 0.00 0.00 0.00 3.71
2524 2800 7.428282 TTTGAGCGACATGTAATTTAAGTCA 57.572 32.000 0.00 0.00 0.00 3.41
2529 2805 8.458052 ACATTCATTTGAGCGACATGTAATTTA 58.542 29.630 0.00 0.00 0.00 1.40
2536 2812 5.050837 TCGATACATTCATTTGAGCGACATG 60.051 40.000 0.00 0.00 0.00 3.21
2570 2846 9.602568 TCGCTCAAACAGGTGTATTTAATATTA 57.397 29.630 0.00 0.00 0.00 0.98
2572 2848 7.551262 TGTCGCTCAAACAGGTGTATTTAATAT 59.449 33.333 0.00 0.00 0.00 1.28
2578 2854 3.120321 TGTCGCTCAAACAGGTGTATT 57.880 42.857 0.00 0.00 0.00 1.89
2584 2860 4.154015 TCATGTTATTGTCGCTCAAACAGG 59.846 41.667 0.00 0.00 39.62 4.00
2734 3018 9.116080 ACTCCATCCATTTCATAATATAGGACA 57.884 33.333 0.00 0.00 0.00 4.02
2740 3024 9.690913 CCATGTACTCCATCCATTTCATAATAT 57.309 33.333 0.00 0.00 0.00 1.28
2741 3025 8.668653 ACCATGTACTCCATCCATTTCATAATA 58.331 33.333 0.00 0.00 0.00 0.98
2742 3026 7.529555 ACCATGTACTCCATCCATTTCATAAT 58.470 34.615 0.00 0.00 0.00 1.28
2743 3027 6.910191 ACCATGTACTCCATCCATTTCATAA 58.090 36.000 0.00 0.00 0.00 1.90
2744 3028 6.514012 ACCATGTACTCCATCCATTTCATA 57.486 37.500 0.00 0.00 0.00 2.15
2745 3029 5.393068 ACCATGTACTCCATCCATTTCAT 57.607 39.130 0.00 0.00 0.00 2.57
2746 3030 4.860802 ACCATGTACTCCATCCATTTCA 57.139 40.909 0.00 0.00 0.00 2.69
2747 3031 4.757149 GCTACCATGTACTCCATCCATTTC 59.243 45.833 0.00 0.00 0.00 2.17
2748 3032 4.446311 GGCTACCATGTACTCCATCCATTT 60.446 45.833 0.00 0.00 0.00 2.32
2749 3033 3.073062 GGCTACCATGTACTCCATCCATT 59.927 47.826 0.00 0.00 0.00 3.16
2750 3034 2.639839 GGCTACCATGTACTCCATCCAT 59.360 50.000 0.00 0.00 0.00 3.41
2751 3035 2.047061 GGCTACCATGTACTCCATCCA 58.953 52.381 0.00 0.00 0.00 3.41
2752 3036 1.000955 CGGCTACCATGTACTCCATCC 59.999 57.143 0.00 0.00 0.00 3.51
2753 3037 1.687123 ACGGCTACCATGTACTCCATC 59.313 52.381 0.00 0.00 0.00 3.51
2754 3038 1.687123 GACGGCTACCATGTACTCCAT 59.313 52.381 0.00 0.00 0.00 3.41
2755 3039 1.108776 GACGGCTACCATGTACTCCA 58.891 55.000 0.00 0.00 0.00 3.86
2756 3040 0.030369 CGACGGCTACCATGTACTCC 59.970 60.000 0.00 0.00 0.00 3.85
2757 3041 0.737219 ACGACGGCTACCATGTACTC 59.263 55.000 0.00 0.00 0.00 2.59
2758 3042 0.454600 CACGACGGCTACCATGTACT 59.545 55.000 0.00 0.00 0.00 2.73
2759 3043 0.526954 CCACGACGGCTACCATGTAC 60.527 60.000 0.00 0.00 0.00 2.90
2760 3044 1.811195 CCACGACGGCTACCATGTA 59.189 57.895 0.00 0.00 0.00 2.29
2761 3045 2.577059 CCACGACGGCTACCATGT 59.423 61.111 0.00 0.00 0.00 3.21
2775 3059 0.108756 GACTAGACGAGGTTGGCCAC 60.109 60.000 3.88 0.00 37.19 5.01
2776 3060 0.541063 TGACTAGACGAGGTTGGCCA 60.541 55.000 0.00 0.00 37.19 5.36
2777 3061 0.606604 TTGACTAGACGAGGTTGGCC 59.393 55.000 0.00 0.00 0.00 5.36
2778 3062 2.674796 ATTGACTAGACGAGGTTGGC 57.325 50.000 0.00 0.00 0.00 4.52
2779 3063 4.985538 AGTATTGACTAGACGAGGTTGG 57.014 45.455 0.00 0.00 32.65 3.77
2790 3074 5.288952 CGCGATCTCGATCTAGTATTGACTA 59.711 44.000 0.00 0.00 43.02 2.59
2791 3075 4.092237 CGCGATCTCGATCTAGTATTGACT 59.908 45.833 0.00 0.00 43.02 3.41
2792 3076 4.327845 CGCGATCTCGATCTAGTATTGAC 58.672 47.826 0.00 0.00 43.02 3.18
2793 3077 3.181519 GCGCGATCTCGATCTAGTATTGA 60.182 47.826 12.10 0.00 43.02 2.57
2794 3078 3.095016 GCGCGATCTCGATCTAGTATTG 58.905 50.000 12.10 0.00 43.02 1.90
2795 3079 2.096174 GGCGCGATCTCGATCTAGTATT 59.904 50.000 12.10 0.00 43.02 1.89
2796 3080 1.666700 GGCGCGATCTCGATCTAGTAT 59.333 52.381 12.10 0.00 43.02 2.12
2797 3081 1.077123 GGCGCGATCTCGATCTAGTA 58.923 55.000 12.10 0.00 43.02 1.82
2798 3082 1.579084 GGGCGCGATCTCGATCTAGT 61.579 60.000 12.10 0.00 43.02 2.57
2799 3083 1.135731 GGGCGCGATCTCGATCTAG 59.864 63.158 12.10 0.00 43.02 2.43
2800 3084 1.302591 AGGGCGCGATCTCGATCTA 60.303 57.895 12.10 0.00 43.02 1.98
2801 3085 2.596046 AGGGCGCGATCTCGATCT 60.596 61.111 12.10 2.10 43.02 2.75
2802 3086 2.429907 CAGGGCGCGATCTCGATC 60.430 66.667 12.10 0.00 43.02 3.69
2803 3087 3.983494 CCAGGGCGCGATCTCGAT 61.983 66.667 12.10 0.00 43.02 3.59
2823 3107 2.125552 TTGTGAGCGGCATCCTCG 60.126 61.111 1.45 0.00 31.98 4.63
2824 3108 2.456119 CGTTGTGAGCGGCATCCTC 61.456 63.158 1.45 0.00 0.00 3.71
2825 3109 2.434884 CGTTGTGAGCGGCATCCT 60.435 61.111 1.45 0.00 0.00 3.24
2826 3110 1.852067 AAACGTTGTGAGCGGCATCC 61.852 55.000 0.00 0.00 0.00 3.51
2827 3111 0.040425 AAAACGTTGTGAGCGGCATC 60.040 50.000 0.00 0.00 0.00 3.91
2828 3112 0.317770 CAAAACGTTGTGAGCGGCAT 60.318 50.000 13.46 0.00 0.00 4.40
2829 3113 1.063327 CAAAACGTTGTGAGCGGCA 59.937 52.632 13.46 0.00 0.00 5.69
2830 3114 1.657181 CCAAAACGTTGTGAGCGGC 60.657 57.895 20.24 0.00 32.40 6.53
2831 3115 0.316689 GACCAAAACGTTGTGAGCGG 60.317 55.000 20.24 5.52 32.40 5.52
2832 3116 0.375454 TGACCAAAACGTTGTGAGCG 59.625 50.000 20.24 5.87 32.40 5.03
2833 3117 2.553079 TTGACCAAAACGTTGTGAGC 57.447 45.000 20.24 11.21 32.40 4.26
2834 3118 4.094294 TCTCTTTGACCAAAACGTTGTGAG 59.906 41.667 20.24 12.02 32.40 3.51
2835 3119 4.004314 TCTCTTTGACCAAAACGTTGTGA 58.996 39.130 20.24 0.00 32.40 3.58
2836 3120 4.349663 TCTCTTTGACCAAAACGTTGTG 57.650 40.909 11.73 11.73 32.40 3.33
2837 3121 6.492254 GTTATCTCTTTGACCAAAACGTTGT 58.508 36.000 0.00 0.00 32.40 3.32
2838 3122 5.619607 CGTTATCTCTTTGACCAAAACGTTG 59.380 40.000 0.00 0.00 34.25 4.10
2839 3123 5.744490 CGTTATCTCTTTGACCAAAACGTT 58.256 37.500 0.00 0.00 0.00 3.99
2840 3124 4.319261 GCGTTATCTCTTTGACCAAAACGT 60.319 41.667 13.20 0.00 32.73 3.99
2841 3125 4.084013 AGCGTTATCTCTTTGACCAAAACG 60.084 41.667 9.45 9.45 33.07 3.60
2842 3126 5.358298 AGCGTTATCTCTTTGACCAAAAC 57.642 39.130 0.00 0.00 0.00 2.43
2843 3127 6.708949 ACTTAGCGTTATCTCTTTGACCAAAA 59.291 34.615 0.00 0.00 0.00 2.44
2844 3128 6.228258 ACTTAGCGTTATCTCTTTGACCAAA 58.772 36.000 0.00 0.00 0.00 3.28
2845 3129 5.790593 ACTTAGCGTTATCTCTTTGACCAA 58.209 37.500 0.00 0.00 0.00 3.67
2846 3130 5.401531 ACTTAGCGTTATCTCTTTGACCA 57.598 39.130 0.00 0.00 0.00 4.02
2847 3131 7.823149 TTAACTTAGCGTTATCTCTTTGACC 57.177 36.000 0.00 0.00 37.88 4.02
2849 3133 9.745880 CCTATTAACTTAGCGTTATCTCTTTGA 57.254 33.333 0.00 0.00 37.88 2.69
2850 3134 9.745880 TCCTATTAACTTAGCGTTATCTCTTTG 57.254 33.333 0.00 0.00 37.88 2.77
2857 3141 9.490379 CCTGAATTCCTATTAACTTAGCGTTAT 57.510 33.333 2.27 0.00 37.88 1.89
2858 3142 8.480501 ACCTGAATTCCTATTAACTTAGCGTTA 58.519 33.333 2.27 0.00 37.05 3.18
2859 3143 7.336396 ACCTGAATTCCTATTAACTTAGCGTT 58.664 34.615 2.27 0.00 39.64 4.84
2860 3144 6.885922 ACCTGAATTCCTATTAACTTAGCGT 58.114 36.000 2.27 0.00 0.00 5.07
2870 3154 8.551440 TGCATATGCTATACCTGAATTCCTATT 58.449 33.333 27.13 0.00 42.66 1.73
2871 3155 8.094284 TGCATATGCTATACCTGAATTCCTAT 57.906 34.615 27.13 0.00 42.66 2.57
2872 3156 7.494922 TGCATATGCTATACCTGAATTCCTA 57.505 36.000 27.13 0.00 42.66 2.94
2873 3157 6.378661 TGCATATGCTATACCTGAATTCCT 57.621 37.500 27.13 0.00 42.66 3.36
2874 3158 7.337689 TGAATGCATATGCTATACCTGAATTCC 59.662 37.037 27.13 10.21 42.66 3.01
2875 3159 8.272545 TGAATGCATATGCTATACCTGAATTC 57.727 34.615 27.13 21.65 42.66 2.17
2876 3160 8.818622 ATGAATGCATATGCTATACCTGAATT 57.181 30.769 27.13 15.06 42.66 2.17
2877 3161 9.334947 GTATGAATGCATATGCTATACCTGAAT 57.665 33.333 27.13 7.35 39.09 2.57
2878 3162 8.320617 TGTATGAATGCATATGCTATACCTGAA 58.679 33.333 27.13 5.16 39.09 3.02
2879 3163 7.850193 TGTATGAATGCATATGCTATACCTGA 58.150 34.615 27.13 5.91 39.09 3.86
2880 3164 7.226128 CCTGTATGAATGCATATGCTATACCTG 59.774 40.741 27.13 19.93 39.09 4.00
2881 3165 7.126268 TCCTGTATGAATGCATATGCTATACCT 59.874 37.037 27.13 10.95 39.09 3.08
2882 3166 7.275183 TCCTGTATGAATGCATATGCTATACC 58.725 38.462 27.13 12.72 39.09 2.73
2883 3167 8.899427 ATCCTGTATGAATGCATATGCTATAC 57.101 34.615 27.13 24.56 39.09 1.47
2885 3169 9.334947 GTTATCCTGTATGAATGCATATGCTAT 57.665 33.333 27.13 16.27 39.09 2.97
2886 3170 8.320617 TGTTATCCTGTATGAATGCATATGCTA 58.679 33.333 27.13 14.66 39.09 3.49
2887 3171 7.170277 TGTTATCCTGTATGAATGCATATGCT 58.830 34.615 27.13 9.28 39.09 3.79
2888 3172 7.381766 TGTTATCCTGTATGAATGCATATGC 57.618 36.000 21.09 21.09 39.09 3.14
2893 3177 8.352201 GCTTTATTGTTATCCTGTATGAATGCA 58.648 33.333 0.00 0.00 0.00 3.96
2894 3178 7.535258 CGCTTTATTGTTATCCTGTATGAATGC 59.465 37.037 0.00 0.00 0.00 3.56
2895 3179 8.773645 TCGCTTTATTGTTATCCTGTATGAATG 58.226 33.333 0.00 0.00 0.00 2.67
2896 3180 8.902540 TCGCTTTATTGTTATCCTGTATGAAT 57.097 30.769 0.00 0.00 0.00 2.57
2897 3181 8.725405 TTCGCTTTATTGTTATCCTGTATGAA 57.275 30.769 0.00 0.00 0.00 2.57
2898 3182 8.201464 TCTTCGCTTTATTGTTATCCTGTATGA 58.799 33.333 0.00 0.00 0.00 2.15
2899 3183 8.365399 TCTTCGCTTTATTGTTATCCTGTATG 57.635 34.615 0.00 0.00 0.00 2.39
2900 3184 8.958119 TTCTTCGCTTTATTGTTATCCTGTAT 57.042 30.769 0.00 0.00 0.00 2.29
2901 3185 8.255206 TCTTCTTCGCTTTATTGTTATCCTGTA 58.745 33.333 0.00 0.00 0.00 2.74
2902 3186 7.103641 TCTTCTTCGCTTTATTGTTATCCTGT 58.896 34.615 0.00 0.00 0.00 4.00
2903 3187 7.539712 TCTTCTTCGCTTTATTGTTATCCTG 57.460 36.000 0.00 0.00 0.00 3.86
2904 3188 8.451748 GTTTCTTCTTCGCTTTATTGTTATCCT 58.548 33.333 0.00 0.00 0.00 3.24
2905 3189 8.234546 TGTTTCTTCTTCGCTTTATTGTTATCC 58.765 33.333 0.00 0.00 0.00 2.59
2906 3190 9.774742 ATGTTTCTTCTTCGCTTTATTGTTATC 57.225 29.630 0.00 0.00 0.00 1.75
2908 3192 9.959749 AAATGTTTCTTCTTCGCTTTATTGTTA 57.040 25.926 0.00 0.00 0.00 2.41
2909 3193 8.871686 AAATGTTTCTTCTTCGCTTTATTGTT 57.128 26.923 0.00 0.00 0.00 2.83
2910 3194 9.959749 TTAAATGTTTCTTCTTCGCTTTATTGT 57.040 25.926 0.00 0.00 0.00 2.71
2915 3199 9.313118 ACAATTTAAATGTTTCTTCTTCGCTTT 57.687 25.926 0.39 0.00 0.00 3.51
2916 3200 8.755018 CACAATTTAAATGTTTCTTCTTCGCTT 58.245 29.630 0.39 0.00 0.00 4.68
2917 3201 8.134895 TCACAATTTAAATGTTTCTTCTTCGCT 58.865 29.630 0.39 0.00 0.00 4.93
2918 3202 8.280909 TCACAATTTAAATGTTTCTTCTTCGC 57.719 30.769 0.39 0.00 0.00 4.70
2925 3209 9.860898 GCTTCCTATCACAATTTAAATGTTTCT 57.139 29.630 0.39 0.00 0.00 2.52
2926 3210 9.638239 TGCTTCCTATCACAATTTAAATGTTTC 57.362 29.630 0.39 0.00 0.00 2.78
2927 3211 9.423061 GTGCTTCCTATCACAATTTAAATGTTT 57.577 29.630 0.39 0.00 33.63 2.83
2928 3212 8.584157 TGTGCTTCCTATCACAATTTAAATGTT 58.416 29.630 0.39 0.00 39.91 2.71
2929 3213 8.028938 GTGTGCTTCCTATCACAATTTAAATGT 58.971 33.333 0.39 0.00 43.78 2.71
2930 3214 7.489113 GGTGTGCTTCCTATCACAATTTAAATG 59.511 37.037 0.39 0.00 43.78 2.32
2931 3215 7.397192 AGGTGTGCTTCCTATCACAATTTAAAT 59.603 33.333 0.00 0.00 43.78 1.40
2932 3216 6.719370 AGGTGTGCTTCCTATCACAATTTAAA 59.281 34.615 0.00 0.00 43.78 1.52
2933 3217 6.245408 AGGTGTGCTTCCTATCACAATTTAA 58.755 36.000 0.00 0.00 43.78 1.52
2934 3218 5.815581 AGGTGTGCTTCCTATCACAATTTA 58.184 37.500 0.00 0.00 43.78 1.40
2935 3219 4.666512 AGGTGTGCTTCCTATCACAATTT 58.333 39.130 0.00 0.00 43.78 1.82
2936 3220 4.307032 AGGTGTGCTTCCTATCACAATT 57.693 40.909 0.00 0.00 43.78 2.32
2937 3221 4.012374 CAAGGTGTGCTTCCTATCACAAT 58.988 43.478 0.00 0.00 43.78 2.71
2938 3222 3.411446 CAAGGTGTGCTTCCTATCACAA 58.589 45.455 0.00 0.00 43.78 3.33
2939 3223 2.290260 CCAAGGTGTGCTTCCTATCACA 60.290 50.000 0.00 0.00 40.50 3.58
2940 3224 2.359900 CCAAGGTGTGCTTCCTATCAC 58.640 52.381 0.00 0.00 34.56 3.06
2941 3225 1.340017 GCCAAGGTGTGCTTCCTATCA 60.340 52.381 0.00 0.00 34.56 2.15
2942 3226 1.065126 AGCCAAGGTGTGCTTCCTATC 60.065 52.381 0.00 0.00 32.94 2.08
2943 3227 0.995024 AGCCAAGGTGTGCTTCCTAT 59.005 50.000 0.00 0.00 32.94 2.57
2944 3228 1.278127 GTAGCCAAGGTGTGCTTCCTA 59.722 52.381 0.00 0.00 39.00 2.94
2945 3229 0.036875 GTAGCCAAGGTGTGCTTCCT 59.963 55.000 0.00 0.00 39.00 3.36
2946 3230 0.960861 GGTAGCCAAGGTGTGCTTCC 60.961 60.000 0.00 0.00 37.78 3.46
2947 3231 0.250727 TGGTAGCCAAGGTGTGCTTC 60.251 55.000 0.00 0.00 39.00 3.86
2948 3232 0.537371 GTGGTAGCCAAGGTGTGCTT 60.537 55.000 0.00 0.00 39.00 3.91
2949 3233 1.073199 GTGGTAGCCAAGGTGTGCT 59.927 57.895 0.00 0.00 41.57 4.40
2950 3234 0.609131 ATGTGGTAGCCAAGGTGTGC 60.609 55.000 0.00 0.00 34.18 4.57
2951 3235 1.167851 CATGTGGTAGCCAAGGTGTG 58.832 55.000 0.00 0.00 34.18 3.82
2952 3236 1.064003 TCATGTGGTAGCCAAGGTGT 58.936 50.000 0.00 0.00 34.18 4.16
2953 3237 1.271325 TGTCATGTGGTAGCCAAGGTG 60.271 52.381 0.00 0.00 34.18 4.00
2954 3238 1.064003 TGTCATGTGGTAGCCAAGGT 58.936 50.000 0.00 0.00 34.18 3.50
2955 3239 2.425143 ATGTCATGTGGTAGCCAAGG 57.575 50.000 0.00 0.00 34.18 3.61
2956 3240 4.454678 ACATATGTCATGTGGTAGCCAAG 58.545 43.478 13.45 0.00 34.18 3.61
2957 3241 4.502105 ACATATGTCATGTGGTAGCCAA 57.498 40.909 13.45 0.00 34.18 4.52
2958 3242 4.198530 CAACATATGTCATGTGGTAGCCA 58.801 43.478 9.23 0.00 31.80 4.75
2959 3243 4.199310 ACAACATATGTCATGTGGTAGCC 58.801 43.478 9.23 0.00 37.96 3.93
2960 3244 6.511767 GCTTACAACATATGTCATGTGGTAGC 60.512 42.308 19.12 18.60 42.70 3.58
2961 3245 6.538381 TGCTTACAACATATGTCATGTGGTAG 59.462 38.462 19.12 14.62 42.70 3.18
2962 3246 6.410540 TGCTTACAACATATGTCATGTGGTA 58.589 36.000 19.12 10.79 42.70 3.25
2963 3247 5.252547 TGCTTACAACATATGTCATGTGGT 58.747 37.500 19.12 4.42 42.70 4.16
2964 3248 5.816449 TGCTTACAACATATGTCATGTGG 57.184 39.130 19.12 13.68 42.70 4.17
2965 3249 7.969508 TGAATTGCTTACAACATATGTCATGTG 59.030 33.333 19.12 12.17 42.70 3.21
2966 3250 8.054152 TGAATTGCTTACAACATATGTCATGT 57.946 30.769 15.59 15.59 42.70 3.21
2967 3251 8.914328 TTGAATTGCTTACAACATATGTCATG 57.086 30.769 9.23 7.41 42.70 3.07
2968 3252 9.357652 GTTTGAATTGCTTACAACATATGTCAT 57.642 29.630 9.23 2.92 42.70 3.06
2969 3253 8.575589 AGTTTGAATTGCTTACAACATATGTCA 58.424 29.630 9.23 0.00 42.70 3.58
2970 3254 8.970691 AGTTTGAATTGCTTACAACATATGTC 57.029 30.769 9.23 0.00 42.70 3.06
3002 3286 0.746659 AGCTGGCGTGCTTTCTTTTT 59.253 45.000 0.00 0.00 40.93 1.94
3003 3287 1.266989 GTAGCTGGCGTGCTTTCTTTT 59.733 47.619 9.95 0.00 43.74 2.27
3004 3288 0.875059 GTAGCTGGCGTGCTTTCTTT 59.125 50.000 9.95 0.00 43.74 2.52
3005 3289 0.250295 TGTAGCTGGCGTGCTTTCTT 60.250 50.000 9.95 0.00 43.74 2.52
3006 3290 0.036010 ATGTAGCTGGCGTGCTTTCT 60.036 50.000 9.95 0.00 43.74 2.52
3007 3291 0.097674 CATGTAGCTGGCGTGCTTTC 59.902 55.000 9.95 5.49 43.74 2.62
3008 3292 1.926511 GCATGTAGCTGGCGTGCTTT 61.927 55.000 22.18 0.00 43.37 3.51
3009 3293 2.401766 GCATGTAGCTGGCGTGCTT 61.402 57.895 22.18 0.00 43.37 3.91
3010 3294 2.821366 GCATGTAGCTGGCGTGCT 60.821 61.111 22.18 9.62 43.37 4.40
3011 3295 3.880846 GGCATGTAGCTGGCGTGC 61.881 66.667 21.66 21.66 45.28 5.34
3012 3296 2.124983 AGGCATGTAGCTGGCGTG 60.125 61.111 0.00 1.98 45.71 5.34
3013 3297 2.187946 GAGGCATGTAGCTGGCGT 59.812 61.111 0.00 0.00 45.71 5.68
3014 3298 1.886313 CTGAGGCATGTAGCTGGCG 60.886 63.158 0.00 0.00 45.71 5.69
3015 3299 1.525535 CCTGAGGCATGTAGCTGGC 60.526 63.158 0.00 0.00 44.79 4.85
3016 3300 0.463295 CACCTGAGGCATGTAGCTGG 60.463 60.000 0.00 0.23 44.79 4.85
3017 3301 1.094073 GCACCTGAGGCATGTAGCTG 61.094 60.000 0.00 0.00 44.79 4.24
3018 3302 1.222936 GCACCTGAGGCATGTAGCT 59.777 57.895 0.00 0.00 44.79 3.32
3019 3303 0.465705 TAGCACCTGAGGCATGTAGC 59.534 55.000 0.00 0.00 44.65 3.58
3020 3304 2.988010 TTAGCACCTGAGGCATGTAG 57.012 50.000 0.00 0.00 0.00 2.74
3021 3305 2.771372 TGATTAGCACCTGAGGCATGTA 59.229 45.455 0.00 0.00 0.00 2.29
3022 3306 1.561076 TGATTAGCACCTGAGGCATGT 59.439 47.619 0.00 0.00 0.00 3.21
3023 3307 2.336945 TGATTAGCACCTGAGGCATG 57.663 50.000 0.00 0.00 0.00 4.06
3024 3308 3.019564 GTTTGATTAGCACCTGAGGCAT 58.980 45.455 0.00 0.00 0.00 4.40
3025 3309 2.224744 TGTTTGATTAGCACCTGAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
3026 3310 2.162408 GTGTTTGATTAGCACCTGAGGC 59.838 50.000 0.00 0.00 0.00 4.70
3027 3311 3.679389 AGTGTTTGATTAGCACCTGAGG 58.321 45.455 0.00 0.00 33.96 3.86
3028 3312 4.083110 CCAAGTGTTTGATTAGCACCTGAG 60.083 45.833 0.00 0.00 36.36 3.35
3029 3313 3.820467 CCAAGTGTTTGATTAGCACCTGA 59.180 43.478 0.00 0.00 36.36 3.86
3030 3314 3.569701 ACCAAGTGTTTGATTAGCACCTG 59.430 43.478 0.00 0.00 36.36 4.00
3031 3315 3.832527 ACCAAGTGTTTGATTAGCACCT 58.167 40.909 0.00 0.00 36.36 4.00
3032 3316 5.897377 ATACCAAGTGTTTGATTAGCACC 57.103 39.130 0.00 0.00 36.36 5.01
3033 3317 7.367285 TGAAATACCAAGTGTTTGATTAGCAC 58.633 34.615 0.00 0.00 36.36 4.40
3034 3318 7.517614 TGAAATACCAAGTGTTTGATTAGCA 57.482 32.000 0.00 0.00 36.36 3.49
3039 3323 8.960591 CCTCTTATGAAATACCAAGTGTTTGAT 58.039 33.333 0.00 0.00 36.36 2.57
3040 3324 7.942341 ACCTCTTATGAAATACCAAGTGTTTGA 59.058 33.333 0.00 0.00 36.36 2.69
3041 3325 8.110860 ACCTCTTATGAAATACCAAGTGTTTG 57.889 34.615 0.00 0.00 27.64 2.93
3042 3326 9.227777 GTACCTCTTATGAAATACCAAGTGTTT 57.772 33.333 0.00 0.00 30.00 2.83
3043 3327 7.827729 GGTACCTCTTATGAAATACCAAGTGTT 59.172 37.037 4.06 0.00 34.93 3.32
3044 3328 7.037873 TGGTACCTCTTATGAAATACCAAGTGT 60.038 37.037 14.36 0.00 38.63 3.55
3045 3329 7.335627 TGGTACCTCTTATGAAATACCAAGTG 58.664 38.462 14.36 0.00 38.63 3.16
3046 3330 7.504926 TGGTACCTCTTATGAAATACCAAGT 57.495 36.000 14.36 0.00 38.63 3.16
3047 3331 6.483640 GCTGGTACCTCTTATGAAATACCAAG 59.516 42.308 14.36 12.53 39.88 3.61
3048 3332 6.157994 AGCTGGTACCTCTTATGAAATACCAA 59.842 38.462 14.36 6.28 39.88 3.67
3049 3333 5.665812 AGCTGGTACCTCTTATGAAATACCA 59.334 40.000 14.36 14.92 38.96 3.25
3050 3334 6.176014 AGCTGGTACCTCTTATGAAATACC 57.824 41.667 14.36 9.48 35.17 2.73
3051 3335 6.869388 GCTAGCTGGTACCTCTTATGAAATAC 59.131 42.308 14.36 0.00 0.00 1.89
3052 3336 6.553476 TGCTAGCTGGTACCTCTTATGAAATA 59.447 38.462 17.23 0.00 0.00 1.40
3053 3337 5.366768 TGCTAGCTGGTACCTCTTATGAAAT 59.633 40.000 17.23 0.00 0.00 2.17
3054 3338 4.714802 TGCTAGCTGGTACCTCTTATGAAA 59.285 41.667 17.23 0.00 0.00 2.69
3055 3339 4.286707 TGCTAGCTGGTACCTCTTATGAA 58.713 43.478 17.23 0.00 0.00 2.57
3056 3340 3.891977 CTGCTAGCTGGTACCTCTTATGA 59.108 47.826 17.23 0.00 0.00 2.15
3057 3341 3.891977 TCTGCTAGCTGGTACCTCTTATG 59.108 47.826 20.06 5.80 0.00 1.90
3058 3342 4.186077 TCTGCTAGCTGGTACCTCTTAT 57.814 45.455 20.06 0.00 0.00 1.73
3059 3343 3.664551 TCTGCTAGCTGGTACCTCTTA 57.335 47.619 20.06 1.81 0.00 2.10
3060 3344 2.498078 GTTCTGCTAGCTGGTACCTCTT 59.502 50.000 20.06 0.59 0.00 2.85
3061 3345 2.104170 GTTCTGCTAGCTGGTACCTCT 58.896 52.381 20.06 12.45 0.00 3.69
3062 3346 1.825474 TGTTCTGCTAGCTGGTACCTC 59.175 52.381 20.06 5.02 0.00 3.85
3063 3347 1.938585 TGTTCTGCTAGCTGGTACCT 58.061 50.000 20.06 0.00 0.00 3.08
3064 3348 2.289444 TGTTGTTCTGCTAGCTGGTACC 60.289 50.000 20.06 4.43 0.00 3.34
3065 3349 2.996621 CTGTTGTTCTGCTAGCTGGTAC 59.003 50.000 20.06 17.53 0.00 3.34
3066 3350 2.612972 GCTGTTGTTCTGCTAGCTGGTA 60.613 50.000 20.06 7.38 37.88 3.25
3067 3351 1.879796 GCTGTTGTTCTGCTAGCTGGT 60.880 52.381 20.06 0.00 37.88 4.00
3068 3352 0.801251 GCTGTTGTTCTGCTAGCTGG 59.199 55.000 20.06 11.19 37.88 4.85
3069 3353 1.805869 AGCTGTTGTTCTGCTAGCTG 58.194 50.000 17.23 16.05 46.70 4.24
3075 3359 1.668047 GGATGCAAGCTGTTGTTCTGC 60.668 52.381 0.00 0.00 40.54 4.26
3076 3360 1.610038 TGGATGCAAGCTGTTGTTCTG 59.390 47.619 0.00 0.00 35.92 3.02
3077 3361 1.985473 TGGATGCAAGCTGTTGTTCT 58.015 45.000 0.00 0.00 35.92 3.01
3078 3362 2.608752 CCTTGGATGCAAGCTGTTGTTC 60.609 50.000 20.62 0.00 35.92 3.18
3079 3363 1.342174 CCTTGGATGCAAGCTGTTGTT 59.658 47.619 20.62 0.00 35.92 2.83
3080 3364 0.963962 CCTTGGATGCAAGCTGTTGT 59.036 50.000 20.62 0.00 35.92 3.32
3081 3365 0.389426 GCCTTGGATGCAAGCTGTTG 60.389 55.000 20.62 8.42 36.67 3.33
3082 3366 0.828762 TGCCTTGGATGCAAGCTGTT 60.829 50.000 20.62 0.00 35.40 3.16
3083 3367 0.828762 TTGCCTTGGATGCAAGCTGT 60.829 50.000 20.62 0.00 43.36 4.40
3084 3368 1.969085 TTGCCTTGGATGCAAGCTG 59.031 52.632 20.62 9.81 43.36 4.24
3085 3369 4.525467 TTGCCTTGGATGCAAGCT 57.475 50.000 20.62 0.00 43.36 3.74
3089 3373 6.294675 GCACTTATTATATTGCCTTGGATGCA 60.295 38.462 0.00 0.00 36.84 3.96
3090 3374 6.095377 GCACTTATTATATTGCCTTGGATGC 58.905 40.000 0.00 0.00 0.00 3.91
3108 3392 9.309224 TGAAGCTACATATATTAGAGGCACTTA 57.691 33.333 0.00 0.00 41.55 2.24
3109 3393 8.195165 TGAAGCTACATATATTAGAGGCACTT 57.805 34.615 0.00 0.00 41.55 3.16
3111 3395 7.872993 TGTTGAAGCTACATATATTAGAGGCAC 59.127 37.037 0.00 0.00 0.00 5.01
3112 3396 7.962441 TGTTGAAGCTACATATATTAGAGGCA 58.038 34.615 0.00 0.00 0.00 4.75
3113 3397 9.442047 AATGTTGAAGCTACATATATTAGAGGC 57.558 33.333 1.07 0.00 35.26 4.70
3124 3408 9.836864 TCATACTTATCAATGTTGAAGCTACAT 57.163 29.630 0.00 0.00 41.13 2.29
3125 3409 9.317936 CTCATACTTATCAATGTTGAAGCTACA 57.682 33.333 0.00 0.00 41.13 2.74
3126 3410 8.279103 GCTCATACTTATCAATGTTGAAGCTAC 58.721 37.037 0.00 0.00 41.13 3.58
3127 3411 7.986889 TGCTCATACTTATCAATGTTGAAGCTA 59.013 33.333 11.02 0.00 41.13 3.32
3128 3412 6.825213 TGCTCATACTTATCAATGTTGAAGCT 59.175 34.615 11.02 0.00 41.13 3.74
3129 3413 7.019774 TGCTCATACTTATCAATGTTGAAGC 57.980 36.000 0.00 2.79 41.13 3.86
3131 3415 9.791820 CAATTGCTCATACTTATCAATGTTGAA 57.208 29.630 0.00 0.00 41.13 2.69
3132 3416 8.959548 ACAATTGCTCATACTTATCAATGTTGA 58.040 29.630 5.05 0.00 42.14 3.18
3135 3419 9.394767 TGTACAATTGCTCATACTTATCAATGT 57.605 29.630 5.05 0.00 0.00 2.71
3163 3447 1.515020 TGCGTTGGCAGTGCTTTTT 59.485 47.368 16.11 0.00 46.21 1.94
3164 3448 3.205395 TGCGTTGGCAGTGCTTTT 58.795 50.000 16.11 0.00 46.21 2.27
3175 3459 1.060713 CGAGACTACCAACTGCGTTG 58.939 55.000 12.53 12.53 42.49 4.10
3176 3460 0.666577 GCGAGACTACCAACTGCGTT 60.667 55.000 0.00 0.00 0.00 4.84
3177 3461 1.080705 GCGAGACTACCAACTGCGT 60.081 57.895 0.00 0.00 0.00 5.24
3178 3462 0.388649 AAGCGAGACTACCAACTGCG 60.389 55.000 0.00 0.00 0.00 5.18
3179 3463 1.727335 GAAAGCGAGACTACCAACTGC 59.273 52.381 0.00 0.00 0.00 4.40
3180 3464 2.989840 CTGAAAGCGAGACTACCAACTG 59.010 50.000 0.00 0.00 0.00 3.16
3181 3465 2.028930 CCTGAAAGCGAGACTACCAACT 60.029 50.000 0.00 0.00 0.00 3.16
3182 3466 2.288886 ACCTGAAAGCGAGACTACCAAC 60.289 50.000 0.00 0.00 0.00 3.77
3183 3467 1.968493 ACCTGAAAGCGAGACTACCAA 59.032 47.619 0.00 0.00 0.00 3.67
3184 3468 1.629043 ACCTGAAAGCGAGACTACCA 58.371 50.000 0.00 0.00 0.00 3.25
3185 3469 2.745515 AACCTGAAAGCGAGACTACC 57.254 50.000 0.00 0.00 0.00 3.18
3207 3491 1.671845 CGAAAGTGGTGGGACGAAAAA 59.328 47.619 0.00 0.00 0.00 1.94
3208 3492 1.301423 CGAAAGTGGTGGGACGAAAA 58.699 50.000 0.00 0.00 0.00 2.29
3209 3493 0.178533 ACGAAAGTGGTGGGACGAAA 59.821 50.000 0.00 0.00 46.97 3.46
3210 3494 1.824658 ACGAAAGTGGTGGGACGAA 59.175 52.632 0.00 0.00 46.97 3.85
3211 3495 3.541072 ACGAAAGTGGTGGGACGA 58.459 55.556 0.00 0.00 46.97 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.