Multiple sequence alignment - TraesCS3B01G514700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G514700 chr3B 100.000 3289 0 0 1 3289 757458331 757455043 0.000000e+00 6074.0
1 TraesCS3B01G514700 chr3B 84.928 1453 167 31 588 2015 757286978 757285553 0.000000e+00 1423.0
2 TraesCS3B01G514700 chr3B 81.989 1488 214 32 919 2378 757279736 757281197 0.000000e+00 1214.0
3 TraesCS3B01G514700 chr3B 81.956 593 85 13 2711 3289 816469484 816470068 1.770000e-132 483.0
4 TraesCS3B01G514700 chr3B 73.515 623 103 31 1507 2106 22101241 22100658 2.610000e-41 180.0
5 TraesCS3B01G514700 chr3B 84.762 105 12 3 1507 1609 22130160 22130058 5.810000e-18 102.0
6 TraesCS3B01G514700 chr3B 89.655 58 6 0 2490 2547 805236515 805236572 1.270000e-09 75.0
7 TraesCS3B01G514700 chr3B 79.439 107 19 3 2617 2720 261322568 261322674 4.550000e-09 73.1
8 TraesCS3B01G514700 chr3A 87.460 2831 226 46 550 3289 703135318 703132526 0.000000e+00 3142.0
9 TraesCS3B01G514700 chr3A 84.113 1731 215 37 588 2288 703099891 703098191 0.000000e+00 1618.0
10 TraesCS3B01G514700 chr3A 88.474 616 57 9 930 1544 703006534 703007136 0.000000e+00 732.0
11 TraesCS3B01G514700 chr3A 76.646 1276 218 45 1041 2280 702570419 702571650 1.670000e-177 632.0
12 TraesCS3B01G514700 chr3A 100.000 33 0 0 786 818 703006479 703006511 9.850000e-06 62.1
13 TraesCS3B01G514700 chr3D 87.733 1606 160 25 704 2288 570278547 570276958 0.000000e+00 1840.0
14 TraesCS3B01G514700 chr3D 83.917 1486 196 23 919 2389 570270923 570272380 0.000000e+00 1380.0
15 TraesCS3B01G514700 chr3D 77.097 1240 201 55 1018 2227 569976371 569977557 9.950000e-180 640.0
16 TraesCS3B01G514700 chr3D 89.474 57 6 0 2491 2547 61016751 61016807 4.550000e-09 73.1
17 TraesCS3B01G514700 chr3D 100.000 33 0 0 786 818 570270879 570270911 9.850000e-06 62.1
18 TraesCS3B01G514700 chr6D 83.670 594 72 17 2711 3289 38230045 38229462 1.340000e-148 536.0
19 TraesCS3B01G514700 chr6A 84.544 537 61 15 2770 3289 2837800 2838331 2.260000e-141 512.0
20 TraesCS3B01G514700 chr6A 84.082 534 70 9 2770 3289 524746533 524746001 4.900000e-138 501.0
21 TraesCS3B01G514700 chr1B 82.203 590 81 16 2715 3289 185542944 185543524 1.370000e-133 486.0
22 TraesCS3B01G514700 chr7D 81.818 594 85 16 2711 3289 518271964 518272549 8.260000e-131 477.0
23 TraesCS3B01G514700 chr7D 95.890 73 3 0 2475 2547 31408822 31408894 5.770000e-23 119.0
24 TraesCS3B01G514700 chr4A 83.992 506 68 8 2796 3289 604764715 604764211 1.070000e-129 473.0
25 TraesCS3B01G514700 chr4A 84.570 337 40 1 23 347 577859429 577859765 1.140000e-84 324.0
26 TraesCS3B01G514700 chr4A 90.909 55 5 0 2493 2547 242900731 242900785 1.270000e-09 75.0
27 TraesCS3B01G514700 chr4A 80.851 94 15 3 2608 2699 685824247 685824339 1.640000e-08 71.3
28 TraesCS3B01G514700 chr5D 90.578 329 31 0 28 356 554847030 554846702 1.400000e-118 436.0
29 TraesCS3B01G514700 chr5D 91.489 47 2 2 2613 2658 433333348 433333393 2.740000e-06 63.9
30 TraesCS3B01G514700 chr4B 90.184 326 22 6 29 353 26811491 26811807 1.830000e-112 416.0
31 TraesCS3B01G514700 chr1A 83.136 338 34 5 27 348 531314641 531314971 1.490000e-73 287.0
32 TraesCS3B01G514700 chr7A 94.444 54 3 0 2491 2544 612030153 612030206 2.100000e-12 84.2
33 TraesCS3B01G514700 chr7A 90.909 55 5 0 2493 2547 512345824 512345878 1.270000e-09 75.0
34 TraesCS3B01G514700 chr7A 92.308 52 4 0 2493 2544 612028050 612028101 1.270000e-09 75.0
35 TraesCS3B01G514700 chr7B 96.000 50 2 0 2496 2545 32133366 32133317 7.560000e-12 82.4
36 TraesCS3B01G514700 chr6B 80.374 107 19 2 2613 2717 456766129 456766023 2.720000e-11 80.5
37 TraesCS3B01G514700 chr2D 87.302 63 6 2 2613 2674 170627741 170627802 1.640000e-08 71.3
38 TraesCS3B01G514700 chr1D 80.435 92 15 3 2613 2702 147883372 147883282 2.120000e-07 67.6
39 TraesCS3B01G514700 chr2B 80.220 91 15 3 2613 2701 196007606 196007517 7.620000e-07 65.8
40 TraesCS3B01G514700 chr2B 88.889 45 4 1 2646 2689 775109010 775109054 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G514700 chr3B 757455043 757458331 3288 True 6074.00 6074 100.0000 1 3289 1 chr3B.!!$R4 3288
1 TraesCS3B01G514700 chr3B 757285553 757286978 1425 True 1423.00 1423 84.9280 588 2015 1 chr3B.!!$R3 1427
2 TraesCS3B01G514700 chr3B 757279736 757281197 1461 False 1214.00 1214 81.9890 919 2378 1 chr3B.!!$F2 1459
3 TraesCS3B01G514700 chr3B 816469484 816470068 584 False 483.00 483 81.9560 2711 3289 1 chr3B.!!$F4 578
4 TraesCS3B01G514700 chr3A 703132526 703135318 2792 True 3142.00 3142 87.4600 550 3289 1 chr3A.!!$R2 2739
5 TraesCS3B01G514700 chr3A 703098191 703099891 1700 True 1618.00 1618 84.1130 588 2288 1 chr3A.!!$R1 1700
6 TraesCS3B01G514700 chr3A 702570419 702571650 1231 False 632.00 632 76.6460 1041 2280 1 chr3A.!!$F1 1239
7 TraesCS3B01G514700 chr3A 703006479 703007136 657 False 397.05 732 94.2370 786 1544 2 chr3A.!!$F2 758
8 TraesCS3B01G514700 chr3D 570276958 570278547 1589 True 1840.00 1840 87.7330 704 2288 1 chr3D.!!$R1 1584
9 TraesCS3B01G514700 chr3D 570270879 570272380 1501 False 721.05 1380 91.9585 786 2389 2 chr3D.!!$F3 1603
10 TraesCS3B01G514700 chr3D 569976371 569977557 1186 False 640.00 640 77.0970 1018 2227 1 chr3D.!!$F2 1209
11 TraesCS3B01G514700 chr6D 38229462 38230045 583 True 536.00 536 83.6700 2711 3289 1 chr6D.!!$R1 578
12 TraesCS3B01G514700 chr6A 2837800 2838331 531 False 512.00 512 84.5440 2770 3289 1 chr6A.!!$F1 519
13 TraesCS3B01G514700 chr6A 524746001 524746533 532 True 501.00 501 84.0820 2770 3289 1 chr6A.!!$R1 519
14 TraesCS3B01G514700 chr1B 185542944 185543524 580 False 486.00 486 82.2030 2715 3289 1 chr1B.!!$F1 574
15 TraesCS3B01G514700 chr7D 518271964 518272549 585 False 477.00 477 81.8180 2711 3289 1 chr7D.!!$F2 578
16 TraesCS3B01G514700 chr4A 604764211 604764715 504 True 473.00 473 83.9920 2796 3289 1 chr4A.!!$R1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 455 0.107165 AATTAAGACCGGCCCTGCTC 60.107 55.0 0.00 0.0 0.00 4.26 F
515 516 0.318360 CTACACACACGCACGGAAGA 60.318 55.0 0.00 0.0 0.00 2.87 F
1244 1348 0.451628 CGCTCGAGTGCAACAACATG 60.452 55.0 13.91 0.0 41.43 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2358 0.888619 TGCTTCTCCTCGTCGAACAT 59.111 50.000 0.0 0.0 0.00 2.71 R
2285 2453 2.685897 TGAACTTGCAACACCAGGTTAC 59.314 45.455 0.0 0.0 37.72 2.50 R
2689 2890 0.815095 CCGTCTTGTTTATTGCCCCC 59.185 55.000 0.0 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.680842 GGACTGAACGGACACTGTT 57.319 52.632 0.00 0.00 0.00 3.16
19 20 1.217882 GGACTGAACGGACACTGTTG 58.782 55.000 0.56 0.00 0.00 3.33
20 21 1.202486 GGACTGAACGGACACTGTTGA 60.202 52.381 0.56 0.00 0.00 3.18
21 22 2.128035 GACTGAACGGACACTGTTGAG 58.872 52.381 8.01 8.01 36.74 3.02
22 23 1.480954 ACTGAACGGACACTGTTGAGT 59.519 47.619 9.10 9.10 38.65 3.41
33 34 3.293311 ACTGTTGAGTGATGCATTTGC 57.707 42.857 0.00 0.00 42.50 3.68
51 52 2.977405 GCATCTTGCGAGTTTGACTT 57.023 45.000 0.00 0.00 31.71 3.01
52 53 3.273919 GCATCTTGCGAGTTTGACTTT 57.726 42.857 0.00 0.00 31.71 2.66
53 54 4.404507 GCATCTTGCGAGTTTGACTTTA 57.595 40.909 0.00 0.00 31.71 1.85
54 55 4.974591 GCATCTTGCGAGTTTGACTTTAT 58.025 39.130 0.00 0.00 31.71 1.40
55 56 6.106877 GCATCTTGCGAGTTTGACTTTATA 57.893 37.500 0.00 0.00 31.71 0.98
56 57 6.719365 GCATCTTGCGAGTTTGACTTTATAT 58.281 36.000 0.00 0.00 31.71 0.86
57 58 7.189512 GCATCTTGCGAGTTTGACTTTATATT 58.810 34.615 0.00 0.00 31.71 1.28
58 59 7.374491 GCATCTTGCGAGTTTGACTTTATATTC 59.626 37.037 0.00 0.00 31.71 1.75
59 60 6.989437 TCTTGCGAGTTTGACTTTATATTCG 58.011 36.000 0.00 0.00 0.00 3.34
60 61 5.712217 TGCGAGTTTGACTTTATATTCGG 57.288 39.130 0.00 0.00 0.00 4.30
61 62 5.172934 TGCGAGTTTGACTTTATATTCGGT 58.827 37.500 0.00 0.00 0.00 4.69
62 63 6.331845 TGCGAGTTTGACTTTATATTCGGTA 58.668 36.000 0.00 0.00 0.00 4.02
63 64 6.812656 TGCGAGTTTGACTTTATATTCGGTAA 59.187 34.615 0.00 0.00 0.00 2.85
64 65 7.009815 TGCGAGTTTGACTTTATATTCGGTAAG 59.990 37.037 0.00 0.00 0.00 2.34
65 66 7.221452 GCGAGTTTGACTTTATATTCGGTAAGA 59.779 37.037 0.00 0.00 0.00 2.10
66 67 9.079833 CGAGTTTGACTTTATATTCGGTAAGAA 57.920 33.333 0.00 0.00 43.93 2.52
68 69 9.939802 AGTTTGACTTTATATTCGGTAAGAACT 57.060 29.630 0.00 0.00 42.39 3.01
93 94 2.717639 AGGTAACCCATCACTCATGC 57.282 50.000 0.00 0.00 37.17 4.06
94 95 1.212935 AGGTAACCCATCACTCATGCC 59.787 52.381 0.00 0.00 37.17 4.40
95 96 1.299541 GTAACCCATCACTCATGCCG 58.700 55.000 0.00 0.00 0.00 5.69
96 97 0.908910 TAACCCATCACTCATGCCGT 59.091 50.000 0.00 0.00 0.00 5.68
97 98 0.908910 AACCCATCACTCATGCCGTA 59.091 50.000 0.00 0.00 0.00 4.02
98 99 1.131638 ACCCATCACTCATGCCGTAT 58.868 50.000 0.00 0.00 0.00 3.06
99 100 1.202687 ACCCATCACTCATGCCGTATG 60.203 52.381 0.00 0.00 38.17 2.39
100 101 1.516161 CCATCACTCATGCCGTATGG 58.484 55.000 0.00 0.00 37.39 2.74
101 102 1.202687 CCATCACTCATGCCGTATGGT 60.203 52.381 2.17 0.00 37.39 3.55
102 103 2.564771 CATCACTCATGCCGTATGGTT 58.435 47.619 2.17 0.00 37.39 3.67
103 104 3.494223 CCATCACTCATGCCGTATGGTTA 60.494 47.826 2.17 0.00 37.39 2.85
104 105 4.318332 CATCACTCATGCCGTATGGTTAT 58.682 43.478 2.17 0.00 37.39 1.89
105 106 4.415881 TCACTCATGCCGTATGGTTATT 57.584 40.909 2.17 0.00 37.39 1.40
106 107 4.126437 TCACTCATGCCGTATGGTTATTG 58.874 43.478 2.17 0.00 37.39 1.90
107 108 4.126437 CACTCATGCCGTATGGTTATTGA 58.874 43.478 2.17 0.71 37.39 2.57
108 109 4.756642 CACTCATGCCGTATGGTTATTGAT 59.243 41.667 2.17 0.00 37.39 2.57
109 110 5.239306 CACTCATGCCGTATGGTTATTGATT 59.761 40.000 2.17 0.00 37.39 2.57
110 111 5.239306 ACTCATGCCGTATGGTTATTGATTG 59.761 40.000 2.17 0.00 37.39 2.67
111 112 4.518590 TCATGCCGTATGGTTATTGATTGG 59.481 41.667 2.17 0.00 37.39 3.16
112 113 3.218453 TGCCGTATGGTTATTGATTGGG 58.782 45.455 2.17 0.00 37.67 4.12
113 114 3.219281 GCCGTATGGTTATTGATTGGGT 58.781 45.455 2.17 0.00 37.67 4.51
114 115 4.141459 TGCCGTATGGTTATTGATTGGGTA 60.141 41.667 2.17 0.00 37.67 3.69
115 116 4.214758 GCCGTATGGTTATTGATTGGGTAC 59.785 45.833 2.17 0.00 37.67 3.34
116 117 5.617252 CCGTATGGTTATTGATTGGGTACT 58.383 41.667 0.00 0.00 0.00 2.73
117 118 6.059484 CCGTATGGTTATTGATTGGGTACTT 58.941 40.000 0.00 0.00 0.00 2.24
118 119 6.544564 CCGTATGGTTATTGATTGGGTACTTT 59.455 38.462 0.00 0.00 0.00 2.66
119 120 7.067737 CCGTATGGTTATTGATTGGGTACTTTT 59.932 37.037 0.00 0.00 0.00 2.27
120 121 7.913297 CGTATGGTTATTGATTGGGTACTTTTG 59.087 37.037 0.00 0.00 0.00 2.44
121 122 7.790782 ATGGTTATTGATTGGGTACTTTTGT 57.209 32.000 0.00 0.00 0.00 2.83
122 123 8.887264 ATGGTTATTGATTGGGTACTTTTGTA 57.113 30.769 0.00 0.00 0.00 2.41
123 124 8.343168 TGGTTATTGATTGGGTACTTTTGTAG 57.657 34.615 0.00 0.00 35.28 2.74
149 150 9.836076 GCTTTTTATTAGTTTCGAATTACCAGT 57.164 29.630 0.00 0.00 0.00 4.00
156 157 6.937436 AGTTTCGAATTACCAGTTGTTTCT 57.063 33.333 0.00 0.00 0.00 2.52
157 158 7.329588 AGTTTCGAATTACCAGTTGTTTCTT 57.670 32.000 0.00 0.00 0.00 2.52
158 159 7.768240 AGTTTCGAATTACCAGTTGTTTCTTT 58.232 30.769 0.00 0.00 0.00 2.52
159 160 8.895737 AGTTTCGAATTACCAGTTGTTTCTTTA 58.104 29.630 0.00 0.00 0.00 1.85
160 161 9.505995 GTTTCGAATTACCAGTTGTTTCTTTAA 57.494 29.630 0.00 0.00 0.00 1.52
168 169 7.315247 ACCAGTTGTTTCTTTAAATTTTGGC 57.685 32.000 0.00 0.00 0.00 4.52
169 170 6.881602 ACCAGTTGTTTCTTTAAATTTTGGCA 59.118 30.769 0.00 0.00 0.00 4.92
170 171 7.555914 ACCAGTTGTTTCTTTAAATTTTGGCAT 59.444 29.630 0.00 0.00 0.00 4.40
171 172 7.856894 CCAGTTGTTTCTTTAAATTTTGGCATG 59.143 33.333 0.00 0.00 0.00 4.06
172 173 8.397148 CAGTTGTTTCTTTAAATTTTGGCATGT 58.603 29.630 0.00 0.00 0.00 3.21
173 174 8.955388 AGTTGTTTCTTTAAATTTTGGCATGTT 58.045 25.926 0.00 0.00 0.00 2.71
174 175 9.220635 GTTGTTTCTTTAAATTTTGGCATGTTC 57.779 29.630 0.00 0.00 0.00 3.18
175 176 8.498054 TGTTTCTTTAAATTTTGGCATGTTCA 57.502 26.923 0.00 0.00 0.00 3.18
176 177 8.394121 TGTTTCTTTAAATTTTGGCATGTTCAC 58.606 29.630 0.00 0.00 0.00 3.18
177 178 7.489574 TTCTTTAAATTTTGGCATGTTCACC 57.510 32.000 0.00 0.00 0.00 4.02
178 179 6.825610 TCTTTAAATTTTGGCATGTTCACCT 58.174 32.000 0.00 0.00 0.00 4.00
179 180 7.957002 TCTTTAAATTTTGGCATGTTCACCTA 58.043 30.769 0.00 0.00 0.00 3.08
180 181 8.424918 TCTTTAAATTTTGGCATGTTCACCTAA 58.575 29.630 0.00 0.00 0.00 2.69
181 182 9.218440 CTTTAAATTTTGGCATGTTCACCTAAT 57.782 29.630 0.00 0.00 0.00 1.73
182 183 8.770438 TTAAATTTTGGCATGTTCACCTAATC 57.230 30.769 0.00 0.00 0.00 1.75
183 184 6.610075 AATTTTGGCATGTTCACCTAATCT 57.390 33.333 0.00 0.00 0.00 2.40
184 185 7.716799 AATTTTGGCATGTTCACCTAATCTA 57.283 32.000 0.00 0.00 0.00 1.98
185 186 7.902920 ATTTTGGCATGTTCACCTAATCTAT 57.097 32.000 0.00 0.00 0.00 1.98
186 187 8.995027 ATTTTGGCATGTTCACCTAATCTATA 57.005 30.769 0.00 0.00 0.00 1.31
187 188 8.995027 TTTTGGCATGTTCACCTAATCTATAT 57.005 30.769 0.00 0.00 0.00 0.86
189 190 9.725019 TTTGGCATGTTCACCTAATCTATATAG 57.275 33.333 3.10 3.10 0.00 1.31
190 191 8.435931 TGGCATGTTCACCTAATCTATATAGT 57.564 34.615 9.58 0.00 0.00 2.12
191 192 9.541884 TGGCATGTTCACCTAATCTATATAGTA 57.458 33.333 9.58 0.00 0.00 1.82
212 213 9.719355 ATAGTATACATCGTGCAATTTTATCCA 57.281 29.630 5.50 0.00 0.00 3.41
213 214 7.861630 AGTATACATCGTGCAATTTTATCCAC 58.138 34.615 5.50 0.00 0.00 4.02
214 215 4.370364 ACATCGTGCAATTTTATCCACC 57.630 40.909 0.00 0.00 0.00 4.61
215 216 3.181501 ACATCGTGCAATTTTATCCACCG 60.182 43.478 0.00 0.00 0.00 4.94
216 217 2.701107 TCGTGCAATTTTATCCACCGA 58.299 42.857 0.00 0.00 0.00 4.69
217 218 2.675844 TCGTGCAATTTTATCCACCGAG 59.324 45.455 0.00 0.00 0.00 4.63
218 219 2.675844 CGTGCAATTTTATCCACCGAGA 59.324 45.455 0.00 0.00 0.00 4.04
219 220 3.126171 CGTGCAATTTTATCCACCGAGAA 59.874 43.478 0.00 0.00 0.00 2.87
220 221 4.662145 GTGCAATTTTATCCACCGAGAAG 58.338 43.478 0.00 0.00 0.00 2.85
221 222 4.394920 GTGCAATTTTATCCACCGAGAAGA 59.605 41.667 0.00 0.00 0.00 2.87
222 223 5.007034 TGCAATTTTATCCACCGAGAAGAA 58.993 37.500 0.00 0.00 0.00 2.52
223 224 5.475220 TGCAATTTTATCCACCGAGAAGAAA 59.525 36.000 0.00 0.00 0.00 2.52
224 225 6.152661 TGCAATTTTATCCACCGAGAAGAAAT 59.847 34.615 0.00 0.00 0.00 2.17
225 226 7.035612 GCAATTTTATCCACCGAGAAGAAATT 58.964 34.615 0.00 0.00 30.67 1.82
226 227 8.188139 GCAATTTTATCCACCGAGAAGAAATTA 58.812 33.333 0.00 0.00 30.06 1.40
227 228 9.503427 CAATTTTATCCACCGAGAAGAAATTAC 57.497 33.333 0.00 0.00 30.06 1.89
228 229 9.462606 AATTTTATCCACCGAGAAGAAATTACT 57.537 29.630 0.00 0.00 29.72 2.24
229 230 7.843490 TTTATCCACCGAGAAGAAATTACTG 57.157 36.000 0.00 0.00 0.00 2.74
230 231 4.202245 TCCACCGAGAAGAAATTACTGG 57.798 45.455 0.00 0.00 0.00 4.00
231 232 3.835978 TCCACCGAGAAGAAATTACTGGA 59.164 43.478 0.00 0.00 0.00 3.86
232 233 4.469945 TCCACCGAGAAGAAATTACTGGAT 59.530 41.667 0.00 0.00 0.00 3.41
233 234 4.572389 CCACCGAGAAGAAATTACTGGATG 59.428 45.833 0.00 0.00 0.00 3.51
234 235 5.419542 CACCGAGAAGAAATTACTGGATGA 58.580 41.667 0.00 0.00 0.00 2.92
235 236 5.874810 CACCGAGAAGAAATTACTGGATGAA 59.125 40.000 0.00 0.00 0.00 2.57
236 237 6.036517 CACCGAGAAGAAATTACTGGATGAAG 59.963 42.308 0.00 0.00 0.00 3.02
237 238 6.070767 ACCGAGAAGAAATTACTGGATGAAGA 60.071 38.462 0.00 0.00 0.00 2.87
238 239 6.989169 CCGAGAAGAAATTACTGGATGAAGAT 59.011 38.462 0.00 0.00 0.00 2.40
239 240 7.497249 CCGAGAAGAAATTACTGGATGAAGATT 59.503 37.037 0.00 0.00 0.00 2.40
240 241 9.534565 CGAGAAGAAATTACTGGATGAAGATTA 57.465 33.333 0.00 0.00 0.00 1.75
266 267 9.570468 AATTAGTAATGATGCATCTCAGAATGT 57.430 29.630 26.32 5.87 37.40 2.71
267 268 8.969260 TTAGTAATGATGCATCTCAGAATGTT 57.031 30.769 26.32 10.88 37.40 2.71
270 271 9.000486 AGTAATGATGCATCTCAGAATGTTATG 58.000 33.333 26.32 0.00 37.40 1.90
271 272 8.996271 GTAATGATGCATCTCAGAATGTTATGA 58.004 33.333 26.32 2.22 37.40 2.15
272 273 8.637196 AATGATGCATCTCAGAATGTTATGAT 57.363 30.769 26.32 4.56 37.40 2.45
273 274 8.637196 ATGATGCATCTCAGAATGTTATGATT 57.363 30.769 26.32 0.00 37.40 2.57
274 275 8.459911 TGATGCATCTCAGAATGTTATGATTT 57.540 30.769 26.32 0.00 37.40 2.17
275 276 8.909923 TGATGCATCTCAGAATGTTATGATTTT 58.090 29.630 26.32 0.00 37.40 1.82
279 280 9.674824 GCATCTCAGAATGTTATGATTTTAAGG 57.325 33.333 0.00 0.00 37.40 2.69
325 326 6.897259 GCAATATTGATGCACTTGAAATGT 57.103 33.333 19.73 0.00 43.29 2.71
326 327 7.298507 GCAATATTGATGCACTTGAAATGTT 57.701 32.000 19.73 0.00 43.29 2.71
327 328 7.745015 GCAATATTGATGCACTTGAAATGTTT 58.255 30.769 19.73 0.00 43.29 2.83
328 329 8.231837 GCAATATTGATGCACTTGAAATGTTTT 58.768 29.630 19.73 0.00 43.29 2.43
331 332 5.886715 TGATGCACTTGAAATGTTTTTCG 57.113 34.783 0.00 0.00 43.49 3.46
332 333 5.347342 TGATGCACTTGAAATGTTTTTCGT 58.653 33.333 0.00 0.00 43.49 3.85
333 334 6.499172 TGATGCACTTGAAATGTTTTTCGTA 58.501 32.000 0.00 0.00 43.49 3.43
334 335 6.975197 TGATGCACTTGAAATGTTTTTCGTAA 59.025 30.769 0.00 0.00 43.49 3.18
335 336 7.651304 TGATGCACTTGAAATGTTTTTCGTAAT 59.349 29.630 0.00 0.00 43.49 1.89
336 337 9.123709 GATGCACTTGAAATGTTTTTCGTAATA 57.876 29.630 0.00 0.00 43.49 0.98
337 338 9.638239 ATGCACTTGAAATGTTTTTCGTAATAT 57.362 25.926 0.00 0.00 43.49 1.28
381 382 8.752005 TTTTTGAGAACTAGCATATTGGCTAT 57.248 30.769 0.00 0.00 44.78 2.97
382 383 7.969536 TTTGAGAACTAGCATATTGGCTATC 57.030 36.000 0.00 0.00 44.78 2.08
383 384 6.670695 TGAGAACTAGCATATTGGCTATCA 57.329 37.500 0.00 0.00 44.78 2.15
384 385 7.250032 TGAGAACTAGCATATTGGCTATCAT 57.750 36.000 0.00 0.00 44.78 2.45
385 386 7.101700 TGAGAACTAGCATATTGGCTATCATG 58.898 38.462 0.00 0.00 44.78 3.07
386 387 7.013823 AGAACTAGCATATTGGCTATCATGT 57.986 36.000 0.00 0.00 44.78 3.21
387 388 7.102346 AGAACTAGCATATTGGCTATCATGTC 58.898 38.462 0.00 0.00 44.78 3.06
388 389 6.364568 ACTAGCATATTGGCTATCATGTCA 57.635 37.500 0.00 0.00 44.78 3.58
389 390 6.955364 ACTAGCATATTGGCTATCATGTCAT 58.045 36.000 0.00 0.00 44.78 3.06
390 391 7.046652 ACTAGCATATTGGCTATCATGTCATC 58.953 38.462 0.00 0.00 44.78 2.92
391 392 5.812286 AGCATATTGGCTATCATGTCATCA 58.188 37.500 0.00 0.00 43.70 3.07
392 393 6.424032 AGCATATTGGCTATCATGTCATCAT 58.576 36.000 0.00 0.00 43.70 2.45
393 394 6.890268 AGCATATTGGCTATCATGTCATCATT 59.110 34.615 0.00 0.00 43.70 2.57
394 395 8.050930 AGCATATTGGCTATCATGTCATCATTA 58.949 33.333 0.00 0.00 43.70 1.90
395 396 8.847196 GCATATTGGCTATCATGTCATCATTAT 58.153 33.333 0.00 0.00 31.15 1.28
400 401 9.962809 TTGGCTATCATGTCATCATTATATTGA 57.037 29.630 0.04 0.04 31.15 2.57
401 402 9.962809 TGGCTATCATGTCATCATTATATTGAA 57.037 29.630 1.65 0.00 31.15 2.69
405 406 7.692460 TCATGTCATCATTATATTGAAGGGC 57.308 36.000 1.65 0.74 31.15 5.19
406 407 6.660521 TCATGTCATCATTATATTGAAGGGCC 59.339 38.462 0.00 0.00 31.15 5.80
407 408 5.324409 TGTCATCATTATATTGAAGGGCCC 58.676 41.667 16.46 16.46 0.00 5.80
408 409 4.706962 GTCATCATTATATTGAAGGGCCCC 59.293 45.833 21.43 4.15 0.00 5.80
409 410 4.607584 TCATCATTATATTGAAGGGCCCCT 59.392 41.667 21.43 4.78 33.87 4.79
410 411 5.795343 TCATCATTATATTGAAGGGCCCCTA 59.205 40.000 21.43 1.08 31.13 3.53
411 412 6.276806 TCATCATTATATTGAAGGGCCCCTAA 59.723 38.462 21.43 12.14 31.13 2.69
412 413 6.734918 TCATTATATTGAAGGGCCCCTAAT 57.265 37.500 21.43 18.63 31.13 1.73
413 414 7.114849 TCATTATATTGAAGGGCCCCTAATT 57.885 36.000 21.43 5.76 31.13 1.40
414 415 7.543755 TCATTATATTGAAGGGCCCCTAATTT 58.456 34.615 21.43 13.83 31.13 1.82
415 416 8.016054 TCATTATATTGAAGGGCCCCTAATTTT 58.984 33.333 21.43 4.33 31.13 1.82
416 417 9.320295 CATTATATTGAAGGGCCCCTAATTTTA 57.680 33.333 21.43 9.29 31.13 1.52
417 418 8.950007 TTATATTGAAGGGCCCCTAATTTTAG 57.050 34.615 21.43 0.00 31.13 1.85
418 419 4.685513 TTGAAGGGCCCCTAATTTTAGT 57.314 40.909 21.43 0.00 31.13 2.24
419 420 4.685513 TGAAGGGCCCCTAATTTTAGTT 57.314 40.909 21.43 0.60 31.13 2.24
420 421 5.018374 TGAAGGGCCCCTAATTTTAGTTT 57.982 39.130 21.43 0.00 31.13 2.66
421 422 5.407936 TGAAGGGCCCCTAATTTTAGTTTT 58.592 37.500 21.43 0.00 31.13 2.43
422 423 5.247337 TGAAGGGCCCCTAATTTTAGTTTTG 59.753 40.000 21.43 0.00 31.13 2.44
423 424 3.517901 AGGGCCCCTAATTTTAGTTTTGC 59.482 43.478 21.43 0.00 28.47 3.68
424 425 3.370103 GGGCCCCTAATTTTAGTTTTGCC 60.370 47.826 12.23 0.00 32.22 4.52
425 426 3.370103 GGCCCCTAATTTTAGTTTTGCCC 60.370 47.826 0.00 0.00 0.00 5.36
426 427 3.677700 GCCCCTAATTTTAGTTTTGCCCG 60.678 47.826 0.00 0.00 0.00 6.13
427 428 3.118920 CCCCTAATTTTAGTTTTGCCCGG 60.119 47.826 0.00 0.00 0.00 5.73
428 429 3.118920 CCCTAATTTTAGTTTTGCCCGGG 60.119 47.826 19.09 19.09 0.00 5.73
429 430 2.465860 AATTTTAGTTTTGCCCGGGC 57.534 45.000 39.40 39.40 42.35 6.13
430 431 0.611200 ATTTTAGTTTTGCCCGGGCC 59.389 50.000 41.75 26.48 41.09 5.80
431 432 1.473497 TTTTAGTTTTGCCCGGGCCC 61.473 55.000 41.75 25.82 41.09 5.80
432 433 3.890250 TTAGTTTTGCCCGGGCCCC 62.890 63.158 41.75 25.46 41.09 5.80
435 436 4.880426 TTTTGCCCGGGCCCCAAA 62.880 61.111 41.75 31.52 41.09 3.28
436 437 4.880426 TTTGCCCGGGCCCCAAAA 62.880 61.111 41.75 30.72 41.09 2.44
437 438 4.647897 TTGCCCGGGCCCCAAAAT 62.648 61.111 41.75 0.00 41.09 1.82
438 439 4.647897 TGCCCGGGCCCCAAAATT 62.648 61.111 41.75 0.00 41.09 1.82
439 440 2.364448 GCCCGGGCCCCAAAATTA 60.364 61.111 36.64 0.00 34.56 1.40
440 441 1.990614 GCCCGGGCCCCAAAATTAA 60.991 57.895 36.64 0.00 34.56 1.40
441 442 1.966901 GCCCGGGCCCCAAAATTAAG 61.967 60.000 36.64 0.00 34.56 1.85
442 443 0.324830 CCCGGGCCCCAAAATTAAGA 60.325 55.000 18.66 0.00 0.00 2.10
443 444 0.821517 CCGGGCCCCAAAATTAAGAC 59.178 55.000 18.66 0.00 0.00 3.01
444 445 0.821517 CGGGCCCCAAAATTAAGACC 59.178 55.000 18.66 0.00 0.00 3.85
445 446 0.821517 GGGCCCCAAAATTAAGACCG 59.178 55.000 12.23 0.00 0.00 4.79
446 447 0.821517 GGCCCCAAAATTAAGACCGG 59.178 55.000 0.00 0.00 0.00 5.28
447 448 0.174845 GCCCCAAAATTAAGACCGGC 59.825 55.000 0.00 0.00 0.00 6.13
448 449 0.821517 CCCCAAAATTAAGACCGGCC 59.178 55.000 0.00 0.00 0.00 6.13
449 450 0.821517 CCCAAAATTAAGACCGGCCC 59.178 55.000 0.00 0.00 0.00 5.80
450 451 1.618616 CCCAAAATTAAGACCGGCCCT 60.619 52.381 0.00 0.00 0.00 5.19
451 452 1.476488 CCAAAATTAAGACCGGCCCTG 59.524 52.381 0.00 0.00 0.00 4.45
452 453 1.135112 CAAAATTAAGACCGGCCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
453 454 0.331616 AAATTAAGACCGGCCCTGCT 59.668 50.000 0.00 0.00 0.00 4.24
454 455 0.107165 AATTAAGACCGGCCCTGCTC 60.107 55.000 0.00 0.00 0.00 4.26
455 456 1.271840 ATTAAGACCGGCCCTGCTCA 61.272 55.000 0.00 0.00 0.00 4.26
456 457 1.899437 TTAAGACCGGCCCTGCTCAG 61.899 60.000 0.00 0.00 0.00 3.35
465 466 4.711949 CCTGCTCAGCGGCCAAGT 62.712 66.667 2.24 0.00 32.89 3.16
466 467 3.429141 CTGCTCAGCGGCCAAGTG 61.429 66.667 2.24 0.00 0.00 3.16
467 468 3.889134 CTGCTCAGCGGCCAAGTGA 62.889 63.158 2.24 0.38 0.00 3.41
468 469 3.426568 GCTCAGCGGCCAAGTGAC 61.427 66.667 2.24 0.00 0.00 3.67
469 470 3.114616 CTCAGCGGCCAAGTGACG 61.115 66.667 2.24 0.00 0.00 4.35
474 475 4.465512 CGGCCAAGTGACGCATGC 62.466 66.667 7.91 7.91 0.00 4.06
475 476 3.364441 GGCCAAGTGACGCATGCA 61.364 61.111 19.57 0.00 0.00 3.96
476 477 2.703798 GGCCAAGTGACGCATGCAT 61.704 57.895 19.57 0.36 0.00 3.96
477 478 1.515519 GCCAAGTGACGCATGCATG 60.516 57.895 22.70 22.70 0.00 4.06
487 488 3.646976 CATGCATGCCGGAGCTCG 61.647 66.667 14.93 3.03 40.80 5.03
500 501 4.457496 GCTCGGCAGCCAGCTACA 62.457 66.667 21.97 0.00 44.79 2.74
501 502 2.510238 CTCGGCAGCCAGCTACAC 60.510 66.667 13.30 0.00 44.79 2.90
502 503 3.300934 CTCGGCAGCCAGCTACACA 62.301 63.158 13.30 0.00 44.79 3.72
503 504 3.121030 CGGCAGCCAGCTACACAC 61.121 66.667 13.30 0.00 44.79 3.82
504 505 2.032528 GGCAGCCAGCTACACACA 59.967 61.111 6.55 0.00 44.79 3.72
505 506 2.328099 GGCAGCCAGCTACACACAC 61.328 63.158 6.55 0.00 44.79 3.82
506 507 2.671177 GCAGCCAGCTACACACACG 61.671 63.158 0.00 0.00 41.15 4.49
507 508 2.357517 AGCCAGCTACACACACGC 60.358 61.111 0.00 0.00 0.00 5.34
508 509 2.664851 GCCAGCTACACACACGCA 60.665 61.111 0.00 0.00 0.00 5.24
509 510 2.954753 GCCAGCTACACACACGCAC 61.955 63.158 0.00 0.00 0.00 5.34
510 511 2.657757 CCAGCTACACACACGCACG 61.658 63.158 0.00 0.00 0.00 5.34
511 512 2.355837 AGCTACACACACGCACGG 60.356 61.111 0.00 0.00 0.00 4.94
512 513 2.355363 GCTACACACACGCACGGA 60.355 61.111 0.00 0.00 0.00 4.69
513 514 1.952133 GCTACACACACGCACGGAA 60.952 57.895 0.00 0.00 0.00 4.30
514 515 1.886861 GCTACACACACGCACGGAAG 61.887 60.000 0.00 0.00 0.00 3.46
515 516 0.318360 CTACACACACGCACGGAAGA 60.318 55.000 0.00 0.00 0.00 2.87
516 517 0.318360 TACACACACGCACGGAAGAG 60.318 55.000 0.00 0.00 0.00 2.85
517 518 2.029073 ACACACGCACGGAAGAGG 59.971 61.111 0.00 0.00 0.00 3.69
518 519 2.029073 CACACGCACGGAAGAGGT 59.971 61.111 0.00 0.00 0.00 3.85
519 520 2.029073 ACACGCACGGAAGAGGTG 59.971 61.111 0.00 0.00 38.42 4.00
520 521 2.738521 CACGCACGGAAGAGGTGG 60.739 66.667 0.00 0.00 35.94 4.61
521 522 4.681978 ACGCACGGAAGAGGTGGC 62.682 66.667 0.00 0.00 35.94 5.01
522 523 4.379243 CGCACGGAAGAGGTGGCT 62.379 66.667 0.00 0.00 35.94 4.75
523 524 2.435059 GCACGGAAGAGGTGGCTC 60.435 66.667 0.00 0.00 35.94 4.70
524 525 2.125912 CACGGAAGAGGTGGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
525 526 3.382832 ACGGAAGAGGTGGCTCGG 61.383 66.667 0.00 0.00 0.00 4.63
526 527 4.821589 CGGAAGAGGTGGCTCGGC 62.822 72.222 0.00 0.00 0.00 5.54
527 528 4.821589 GGAAGAGGTGGCTCGGCG 62.822 72.222 0.00 0.00 0.00 6.46
528 529 4.821589 GAAGAGGTGGCTCGGCGG 62.822 72.222 7.21 0.00 0.00 6.13
567 568 2.375766 CGAGAACACCGCAGAGTGC 61.376 63.158 0.00 0.00 41.67 4.40
586 587 0.813821 CAGTCTCCGTGAGAGCATGA 59.186 55.000 0.00 0.00 42.90 3.07
592 598 1.291184 CCGTGAGAGCATGAAACGCA 61.291 55.000 0.00 0.00 32.63 5.24
634 640 1.074752 GAGAGCTTCTCTTGGTTGCG 58.925 55.000 0.00 0.00 41.35 4.85
635 641 0.952984 AGAGCTTCTCTTGGTTGCGC 60.953 55.000 0.00 0.00 37.60 6.09
637 643 2.863153 CTTCTCTTGGTTGCGCGG 59.137 61.111 8.83 0.00 0.00 6.46
638 644 1.667830 CTTCTCTTGGTTGCGCGGA 60.668 57.895 8.83 0.00 0.00 5.54
640 646 3.121030 CTCTTGGTTGCGCGGAGG 61.121 66.667 8.83 0.00 0.00 4.30
661 667 2.315176 CGGAGAGATCTGGATCCAAGT 58.685 52.381 17.00 7.10 38.58 3.16
670 676 5.365314 AGATCTGGATCCAAGTAGAGTTTCC 59.635 44.000 17.00 0.00 38.58 3.13
708 740 6.099125 TCGACCCTTTGACCATAATTATCAGA 59.901 38.462 0.00 0.00 0.00 3.27
709 741 6.202954 CGACCCTTTGACCATAATTATCAGAC 59.797 42.308 0.00 0.00 0.00 3.51
716 748 6.997655 TGACCATAATTATCAGACAGCTAGG 58.002 40.000 0.00 0.00 0.00 3.02
745 777 0.468585 TACGCCACCCGGATCAGTAT 60.469 55.000 0.73 0.00 42.52 2.12
770 802 2.054363 GTGCATATCATCGTGGACTCG 58.946 52.381 0.00 0.00 34.36 4.18
831 904 3.495453 GCTCATCGGGTCTACTCTCTACT 60.495 52.174 0.00 0.00 0.00 2.57
843 916 4.668138 ACTCTCTACTCTTCCACTTCCT 57.332 45.455 0.00 0.00 0.00 3.36
846 919 2.167487 CTCTACTCTTCCACTTCCTGCC 59.833 54.545 0.00 0.00 0.00 4.85
880 953 4.164822 AGAAAACCAGCAAACATCATCG 57.835 40.909 0.00 0.00 0.00 3.84
898 974 1.671469 CGTCTCTCACGTACACACAC 58.329 55.000 0.00 0.00 44.07 3.82
899 975 1.263484 CGTCTCTCACGTACACACACT 59.737 52.381 0.00 0.00 44.07 3.55
900 976 2.651701 GTCTCTCACGTACACACACTG 58.348 52.381 0.00 0.00 0.00 3.66
910 986 2.638556 ACACACACTGTCGATCTAGC 57.361 50.000 0.00 0.00 0.00 3.42
914 991 1.202348 CACACTGTCGATCTAGCCACA 59.798 52.381 0.00 0.00 0.00 4.17
956 1033 1.099879 GGAGCTAGCAATGGCACCTG 61.100 60.000 18.83 0.00 44.61 4.00
957 1034 1.722636 GAGCTAGCAATGGCACCTGC 61.723 60.000 18.83 14.00 44.61 4.85
958 1035 1.751927 GCTAGCAATGGCACCTGCT 60.752 57.895 24.34 24.34 46.16 4.24
959 1036 2.001361 GCTAGCAATGGCACCTGCTG 62.001 60.000 27.50 19.92 44.51 4.41
980 1067 2.381838 ATCGACCACAGCACAGCACA 62.382 55.000 0.00 0.00 0.00 4.57
1021 1108 1.228124 TGGCAACCAAAGGACCTCG 60.228 57.895 0.00 0.00 0.00 4.63
1110 1206 3.310860 GACGGCCGTCACAAGGGAT 62.311 63.158 44.88 15.63 44.02 3.85
1244 1348 0.451628 CGCTCGAGTGCAACAACATG 60.452 55.000 13.91 0.00 41.43 3.21
1560 1673 2.685380 CCTTCCCCGCTCAGGTCT 60.685 66.667 0.00 0.00 38.74 3.85
1689 1820 1.073025 ATCACGGAGTTGCTTGGCA 59.927 52.632 0.00 0.00 41.61 4.92
1796 1933 2.991076 GCTGGACTCGTACGCACCT 61.991 63.158 11.24 0.00 0.00 4.00
1997 2156 1.735559 GACGCGGTTCGGCTACTTT 60.736 57.895 12.47 0.00 44.55 2.66
2012 2171 1.157870 ACTTTGTGCCAACGGTCGAG 61.158 55.000 0.00 0.00 0.00 4.04
2171 2336 2.430367 GTGGTGCTCGGAGGGTTT 59.570 61.111 7.20 0.00 0.00 3.27
2240 2405 3.241530 TTCACCGGGCAGCTGACT 61.242 61.111 21.42 0.00 0.00 3.41
2285 2453 0.375454 TCAATTTTACGATGCCCGCG 59.625 50.000 0.00 0.00 43.32 6.46
2343 2519 3.085952 TGCCTGGATTTCGAATTTCCT 57.914 42.857 21.61 0.00 0.00 3.36
2344 2520 3.016736 TGCCTGGATTTCGAATTTCCTC 58.983 45.455 21.61 14.02 0.00 3.71
2352 2528 2.184385 TCGAATTTCCTCGCGTCTAC 57.816 50.000 5.77 0.00 38.73 2.59
2358 2534 1.825090 TTCCTCGCGTCTACCTAACA 58.175 50.000 5.77 0.00 0.00 2.41
2359 2535 1.089920 TCCTCGCGTCTACCTAACAC 58.910 55.000 5.77 0.00 0.00 3.32
2410 2587 3.834489 ATACTCTGTGAAGCCAGATGG 57.166 47.619 0.00 0.00 40.53 3.51
2544 2739 7.605449 AGGGTATTGTTGAACTCAAATTGATG 58.395 34.615 0.00 0.00 37.63 3.07
2550 2745 6.437928 TGTTGAACTCAAATTGATGTACTGC 58.562 36.000 0.00 0.00 37.63 4.40
2561 2762 4.150897 TGATGTACTGCCCTGGTTTATC 57.849 45.455 0.00 0.00 0.00 1.75
2567 2768 1.561542 CTGCCCTGGTTTATCAGTCCT 59.438 52.381 0.00 0.00 33.14 3.85
2569 2770 1.134068 GCCCTGGTTTATCAGTCCTCC 60.134 57.143 0.00 0.00 33.14 4.30
2571 2772 2.436173 CCCTGGTTTATCAGTCCTCCTC 59.564 54.545 0.00 0.00 33.14 3.71
2701 2902 7.182817 AGAAAATAAGAAGGGGGCAATAAAC 57.817 36.000 0.00 0.00 0.00 2.01
2703 2904 6.943899 AAATAAGAAGGGGGCAATAAACAA 57.056 33.333 0.00 0.00 0.00 2.83
2707 2908 1.834188 AGGGGGCAATAAACAAGACG 58.166 50.000 0.00 0.00 0.00 4.18
2708 2909 0.815095 GGGGGCAATAAACAAGACGG 59.185 55.000 0.00 0.00 0.00 4.79
2710 2911 1.743394 GGGGCAATAAACAAGACGGAG 59.257 52.381 0.00 0.00 0.00 4.63
2711 2912 2.617021 GGGGCAATAAACAAGACGGAGA 60.617 50.000 0.00 0.00 0.00 3.71
2717 2918 6.421202 GGCAATAAACAAGACGGAGATAGTAG 59.579 42.308 0.00 0.00 0.00 2.57
2789 2993 1.686355 TTTTCACTGGTGTCCGCAAT 58.314 45.000 0.53 0.00 0.00 3.56
2825 3029 2.236766 GATCATTTGCCATGGAGGGAG 58.763 52.381 18.40 1.36 39.73 4.30
2891 3096 2.246761 TAGAAATGGGACCACCGCCG 62.247 60.000 0.00 0.00 44.64 6.46
2913 3118 0.321298 GACTTCAAGCAACCCGCCTA 60.321 55.000 0.00 0.00 44.04 3.93
2927 3132 0.370273 CGCCTACAATGTCAACTCGC 59.630 55.000 0.00 0.00 0.00 5.03
2929 3134 0.999406 CCTACAATGTCAACTCGCGG 59.001 55.000 6.13 0.00 0.00 6.46
2960 3165 6.042437 ACAATCATGGTATCTCTACTGATGCA 59.958 38.462 0.00 0.00 31.99 3.96
2972 3177 5.673514 TCTACTGATGCATGTGCTCAATTA 58.326 37.500 2.46 0.00 42.66 1.40
2973 3184 6.293698 TCTACTGATGCATGTGCTCAATTAT 58.706 36.000 2.46 0.00 42.66 1.28
2992 3203 8.321353 TCAATTATGTGTTACTGAACCTGATCT 58.679 33.333 0.00 0.00 34.38 2.75
3121 3334 6.373005 AAAAATACCCCCAGGAAATTCTTG 57.627 37.500 0.00 0.00 36.73 3.02
3199 3414 3.754965 AGTGTTGATAAAGAAGCAGCCA 58.245 40.909 0.00 0.00 0.00 4.75
3202 3417 5.098211 GTGTTGATAAAGAAGCAGCCATTC 58.902 41.667 0.00 0.00 0.00 2.67
3227 3442 9.659830 TCGTTTCTATTGCTTTCTTTTTAAGAC 57.340 29.630 0.00 0.00 37.23 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.128035 CTCAACAGTGTCCGTTCAGTC 58.872 52.381 0.00 0.00 0.00 3.51
2 3 1.480954 ACTCAACAGTGTCCGTTCAGT 59.519 47.619 0.00 0.00 0.00 3.41
3 4 1.860950 CACTCAACAGTGTCCGTTCAG 59.139 52.381 0.00 0.00 44.63 3.02
10 11 5.370498 GCAAATGCATCACTCAACAGTGTC 61.370 45.833 0.00 0.00 44.66 3.67
11 12 3.551454 GCAAATGCATCACTCAACAGTGT 60.551 43.478 0.00 0.00 44.66 3.55
12 13 2.984471 GCAAATGCATCACTCAACAGTG 59.016 45.455 0.00 0.00 45.19 3.66
13 14 3.293311 GCAAATGCATCACTCAACAGT 57.707 42.857 0.00 0.00 41.59 3.55
36 37 6.183360 ACCGAATATAAAGTCAAACTCGCAAG 60.183 38.462 0.00 0.00 0.00 4.01
37 38 5.640357 ACCGAATATAAAGTCAAACTCGCAA 59.360 36.000 0.00 0.00 0.00 4.85
38 39 5.172934 ACCGAATATAAAGTCAAACTCGCA 58.827 37.500 0.00 0.00 0.00 5.10
39 40 5.713822 ACCGAATATAAAGTCAAACTCGC 57.286 39.130 0.00 0.00 0.00 5.03
40 41 8.624701 TCTTACCGAATATAAAGTCAAACTCG 57.375 34.615 0.00 0.00 0.00 4.18
42 43 9.939802 AGTTCTTACCGAATATAAAGTCAAACT 57.060 29.630 0.00 0.00 33.45 2.66
69 70 5.417580 GCATGAGTGATGGGTTACCTAAAAA 59.582 40.000 0.00 0.00 37.76 1.94
70 71 4.947388 GCATGAGTGATGGGTTACCTAAAA 59.053 41.667 0.00 0.00 37.76 1.52
71 72 4.523083 GCATGAGTGATGGGTTACCTAAA 58.477 43.478 0.00 0.00 37.76 1.85
72 73 3.118038 GGCATGAGTGATGGGTTACCTAA 60.118 47.826 0.00 0.00 37.76 2.69
73 74 2.438021 GGCATGAGTGATGGGTTACCTA 59.562 50.000 0.00 0.00 37.76 3.08
74 75 1.212935 GGCATGAGTGATGGGTTACCT 59.787 52.381 0.00 0.00 37.76 3.08
75 76 1.680338 GGCATGAGTGATGGGTTACC 58.320 55.000 0.00 0.00 31.99 2.85
76 77 1.299541 CGGCATGAGTGATGGGTTAC 58.700 55.000 0.00 0.00 31.99 2.50
77 78 0.908910 ACGGCATGAGTGATGGGTTA 59.091 50.000 0.00 0.00 31.99 2.85
78 79 0.908910 TACGGCATGAGTGATGGGTT 59.091 50.000 0.00 0.00 31.99 4.11
79 80 1.131638 ATACGGCATGAGTGATGGGT 58.868 50.000 0.00 0.00 31.99 4.51
80 81 1.516161 CATACGGCATGAGTGATGGG 58.484 55.000 0.00 0.00 36.69 4.00
81 82 1.202687 ACCATACGGCATGAGTGATGG 60.203 52.381 12.88 12.88 39.80 3.51
82 83 2.245159 ACCATACGGCATGAGTGATG 57.755 50.000 0.00 0.00 36.69 3.07
83 84 4.623932 ATAACCATACGGCATGAGTGAT 57.376 40.909 0.00 0.00 36.69 3.06
84 85 4.126437 CAATAACCATACGGCATGAGTGA 58.874 43.478 0.00 0.00 36.69 3.41
85 86 4.126437 TCAATAACCATACGGCATGAGTG 58.874 43.478 0.00 0.00 36.69 3.51
86 87 4.415881 TCAATAACCATACGGCATGAGT 57.584 40.909 0.00 0.00 36.69 3.41
87 88 5.335113 CCAATCAATAACCATACGGCATGAG 60.335 44.000 0.00 0.00 36.69 2.90
88 89 4.518590 CCAATCAATAACCATACGGCATGA 59.481 41.667 0.00 0.00 36.69 3.07
89 90 4.321156 CCCAATCAATAACCATACGGCATG 60.321 45.833 0.00 0.00 34.57 4.06
90 91 3.826157 CCCAATCAATAACCATACGGCAT 59.174 43.478 0.00 0.00 34.57 4.40
91 92 3.218453 CCCAATCAATAACCATACGGCA 58.782 45.455 0.00 0.00 34.57 5.69
92 93 3.219281 ACCCAATCAATAACCATACGGC 58.781 45.455 0.00 0.00 34.57 5.68
93 94 5.617252 AGTACCCAATCAATAACCATACGG 58.383 41.667 0.00 0.00 38.77 4.02
94 95 7.562454 AAAGTACCCAATCAATAACCATACG 57.438 36.000 0.00 0.00 0.00 3.06
95 96 8.745590 ACAAAAGTACCCAATCAATAACCATAC 58.254 33.333 0.00 0.00 0.00 2.39
96 97 8.887264 ACAAAAGTACCCAATCAATAACCATA 57.113 30.769 0.00 0.00 0.00 2.74
97 98 7.790782 ACAAAAGTACCCAATCAATAACCAT 57.209 32.000 0.00 0.00 0.00 3.55
98 99 7.094118 GCTACAAAAGTACCCAATCAATAACCA 60.094 37.037 0.00 0.00 0.00 3.67
99 100 7.122204 AGCTACAAAAGTACCCAATCAATAACC 59.878 37.037 0.00 0.00 0.00 2.85
100 101 8.051901 AGCTACAAAAGTACCCAATCAATAAC 57.948 34.615 0.00 0.00 0.00 1.89
101 102 8.644374 AAGCTACAAAAGTACCCAATCAATAA 57.356 30.769 0.00 0.00 0.00 1.40
102 103 8.644374 AAAGCTACAAAAGTACCCAATCAATA 57.356 30.769 0.00 0.00 0.00 1.90
103 104 7.539034 AAAGCTACAAAAGTACCCAATCAAT 57.461 32.000 0.00 0.00 0.00 2.57
104 105 6.969993 AAAGCTACAAAAGTACCCAATCAA 57.030 33.333 0.00 0.00 0.00 2.57
105 106 6.969993 AAAAGCTACAAAAGTACCCAATCA 57.030 33.333 0.00 0.00 0.00 2.57
106 107 9.923143 AATAAAAAGCTACAAAAGTACCCAATC 57.077 29.630 0.00 0.00 0.00 2.67
109 110 9.577222 ACTAATAAAAAGCTACAAAAGTACCCA 57.423 29.630 0.00 0.00 0.00 4.51
123 124 9.836076 ACTGGTAATTCGAAACTAATAAAAAGC 57.164 29.630 0.00 0.00 0.00 3.51
130 131 9.063615 AGAAACAACTGGTAATTCGAAACTAAT 57.936 29.630 0.00 0.00 0.00 1.73
131 132 8.441312 AGAAACAACTGGTAATTCGAAACTAA 57.559 30.769 0.00 0.00 0.00 2.24
132 133 8.441312 AAGAAACAACTGGTAATTCGAAACTA 57.559 30.769 0.00 0.00 0.00 2.24
133 134 6.937436 AGAAACAACTGGTAATTCGAAACT 57.063 33.333 0.00 0.00 0.00 2.66
134 135 7.980742 AAAGAAACAACTGGTAATTCGAAAC 57.019 32.000 0.00 0.00 0.00 2.78
142 143 8.884726 GCCAAAATTTAAAGAAACAACTGGTAA 58.115 29.630 0.00 0.00 0.00 2.85
143 144 8.041323 TGCCAAAATTTAAAGAAACAACTGGTA 58.959 29.630 0.00 0.00 0.00 3.25
144 145 6.881602 TGCCAAAATTTAAAGAAACAACTGGT 59.118 30.769 0.00 0.00 0.00 4.00
145 146 7.313951 TGCCAAAATTTAAAGAAACAACTGG 57.686 32.000 0.00 0.00 0.00 4.00
146 147 8.397148 ACATGCCAAAATTTAAAGAAACAACTG 58.603 29.630 0.00 0.00 0.00 3.16
147 148 8.504812 ACATGCCAAAATTTAAAGAAACAACT 57.495 26.923 0.00 0.00 0.00 3.16
148 149 9.220635 GAACATGCCAAAATTTAAAGAAACAAC 57.779 29.630 0.00 0.00 0.00 3.32
149 150 8.950210 TGAACATGCCAAAATTTAAAGAAACAA 58.050 25.926 0.00 0.00 0.00 2.83
150 151 8.394121 GTGAACATGCCAAAATTTAAAGAAACA 58.606 29.630 0.00 0.00 0.00 2.83
151 152 7.855409 GGTGAACATGCCAAAATTTAAAGAAAC 59.145 33.333 0.00 0.00 0.00 2.78
152 153 7.772757 AGGTGAACATGCCAAAATTTAAAGAAA 59.227 29.630 0.00 0.00 0.00 2.52
153 154 7.278875 AGGTGAACATGCCAAAATTTAAAGAA 58.721 30.769 0.00 0.00 0.00 2.52
154 155 6.825610 AGGTGAACATGCCAAAATTTAAAGA 58.174 32.000 0.00 0.00 0.00 2.52
155 156 8.600449 TTAGGTGAACATGCCAAAATTTAAAG 57.400 30.769 0.00 0.00 0.00 1.85
156 157 9.213799 GATTAGGTGAACATGCCAAAATTTAAA 57.786 29.630 0.00 0.00 0.00 1.52
157 158 8.592809 AGATTAGGTGAACATGCCAAAATTTAA 58.407 29.630 0.00 0.00 0.00 1.52
158 159 8.133024 AGATTAGGTGAACATGCCAAAATTTA 57.867 30.769 0.00 0.00 0.00 1.40
159 160 7.008021 AGATTAGGTGAACATGCCAAAATTT 57.992 32.000 0.00 0.00 0.00 1.82
160 161 6.610075 AGATTAGGTGAACATGCCAAAATT 57.390 33.333 0.00 0.00 0.00 1.82
161 162 7.902920 ATAGATTAGGTGAACATGCCAAAAT 57.097 32.000 0.00 0.00 0.00 1.82
162 163 8.995027 ATATAGATTAGGTGAACATGCCAAAA 57.005 30.769 0.00 0.00 0.00 2.44
163 164 9.725019 CTATATAGATTAGGTGAACATGCCAAA 57.275 33.333 3.44 0.00 0.00 3.28
164 165 8.880244 ACTATATAGATTAGGTGAACATGCCAA 58.120 33.333 16.79 0.00 0.00 4.52
165 166 8.435931 ACTATATAGATTAGGTGAACATGCCA 57.564 34.615 16.79 0.00 0.00 4.92
186 187 9.719355 TGGATAAAATTGCACGATGTATACTAT 57.281 29.630 4.17 0.00 0.00 2.12
187 188 8.984764 GTGGATAAAATTGCACGATGTATACTA 58.015 33.333 4.17 0.00 0.00 1.82
188 189 7.041372 GGTGGATAAAATTGCACGATGTATACT 60.041 37.037 4.17 0.00 38.69 2.12
189 190 7.075741 GGTGGATAAAATTGCACGATGTATAC 58.924 38.462 0.00 0.00 38.69 1.47
190 191 6.073494 CGGTGGATAAAATTGCACGATGTATA 60.073 38.462 0.00 0.00 38.69 1.47
191 192 5.277779 CGGTGGATAAAATTGCACGATGTAT 60.278 40.000 0.00 0.00 38.69 2.29
192 193 4.034626 CGGTGGATAAAATTGCACGATGTA 59.965 41.667 0.00 0.00 38.69 2.29
193 194 3.181501 CGGTGGATAAAATTGCACGATGT 60.182 43.478 0.00 0.00 38.69 3.06
194 195 3.064682 TCGGTGGATAAAATTGCACGATG 59.935 43.478 0.00 0.00 38.69 3.84
195 196 3.275143 TCGGTGGATAAAATTGCACGAT 58.725 40.909 0.00 0.00 38.69 3.73
196 197 2.675844 CTCGGTGGATAAAATTGCACGA 59.324 45.455 0.00 0.00 38.69 4.35
197 198 2.675844 TCTCGGTGGATAAAATTGCACG 59.324 45.455 0.00 0.00 38.69 5.34
198 199 4.394920 TCTTCTCGGTGGATAAAATTGCAC 59.605 41.667 0.00 0.00 37.24 4.57
199 200 4.584874 TCTTCTCGGTGGATAAAATTGCA 58.415 39.130 0.00 0.00 0.00 4.08
200 201 5.560966 TTCTTCTCGGTGGATAAAATTGC 57.439 39.130 0.00 0.00 0.00 3.56
201 202 9.503427 GTAATTTCTTCTCGGTGGATAAAATTG 57.497 33.333 0.00 0.00 0.00 2.32
202 203 9.462606 AGTAATTTCTTCTCGGTGGATAAAATT 57.537 29.630 0.00 0.00 0.00 1.82
203 204 8.893727 CAGTAATTTCTTCTCGGTGGATAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
204 205 7.335924 CCAGTAATTTCTTCTCGGTGGATAAAA 59.664 37.037 0.00 0.00 0.00 1.52
205 206 6.821665 CCAGTAATTTCTTCTCGGTGGATAAA 59.178 38.462 0.00 0.00 0.00 1.40
206 207 6.155565 TCCAGTAATTTCTTCTCGGTGGATAA 59.844 38.462 0.00 0.00 0.00 1.75
207 208 5.659525 TCCAGTAATTTCTTCTCGGTGGATA 59.340 40.000 0.00 0.00 0.00 2.59
208 209 4.469945 TCCAGTAATTTCTTCTCGGTGGAT 59.530 41.667 0.00 0.00 0.00 3.41
209 210 3.835978 TCCAGTAATTTCTTCTCGGTGGA 59.164 43.478 0.00 0.00 0.00 4.02
210 211 4.202245 TCCAGTAATTTCTTCTCGGTGG 57.798 45.455 0.00 0.00 0.00 4.61
211 212 5.419542 TCATCCAGTAATTTCTTCTCGGTG 58.580 41.667 0.00 0.00 0.00 4.94
212 213 5.677319 TCATCCAGTAATTTCTTCTCGGT 57.323 39.130 0.00 0.00 0.00 4.69
213 214 6.341316 TCTTCATCCAGTAATTTCTTCTCGG 58.659 40.000 0.00 0.00 0.00 4.63
214 215 8.430801 AATCTTCATCCAGTAATTTCTTCTCG 57.569 34.615 0.00 0.00 0.00 4.04
240 241 9.570468 ACATTCTGAGATGCATCATTACTAATT 57.430 29.630 27.81 4.17 0.00 1.40
241 242 9.570468 AACATTCTGAGATGCATCATTACTAAT 57.430 29.630 27.81 15.42 0.00 1.73
242 243 8.969260 AACATTCTGAGATGCATCATTACTAA 57.031 30.769 27.81 13.98 0.00 2.24
244 245 9.000486 CATAACATTCTGAGATGCATCATTACT 58.000 33.333 27.81 7.31 0.00 2.24
245 246 8.996271 TCATAACATTCTGAGATGCATCATTAC 58.004 33.333 27.81 15.72 0.00 1.89
246 247 9.734984 ATCATAACATTCTGAGATGCATCATTA 57.265 29.630 27.81 12.57 0.00 1.90
247 248 8.637196 ATCATAACATTCTGAGATGCATCATT 57.363 30.769 27.81 8.91 0.00 2.57
248 249 8.637196 AATCATAACATTCTGAGATGCATCAT 57.363 30.769 27.81 13.31 0.00 2.45
249 250 8.459911 AAATCATAACATTCTGAGATGCATCA 57.540 30.769 27.81 9.69 0.00 3.07
253 254 9.674824 CCTTAAAATCATAACATTCTGAGATGC 57.325 33.333 0.00 0.00 0.00 3.91
302 303 6.897259 ACATTTCAAGTGCATCAATATTGC 57.103 33.333 10.76 0.45 40.55 3.56
305 306 8.649841 CGAAAAACATTTCAAGTGCATCAATAT 58.350 29.630 0.00 0.00 0.00 1.28
306 307 7.651304 ACGAAAAACATTTCAAGTGCATCAATA 59.349 29.630 0.00 0.00 0.00 1.90
307 308 6.479660 ACGAAAAACATTTCAAGTGCATCAAT 59.520 30.769 0.00 0.00 0.00 2.57
308 309 5.809562 ACGAAAAACATTTCAAGTGCATCAA 59.190 32.000 0.00 0.00 0.00 2.57
309 310 5.347342 ACGAAAAACATTTCAAGTGCATCA 58.653 33.333 0.00 0.00 0.00 3.07
310 311 5.888412 ACGAAAAACATTTCAAGTGCATC 57.112 34.783 0.00 0.00 0.00 3.91
311 312 7.945033 ATTACGAAAAACATTTCAAGTGCAT 57.055 28.000 0.00 0.00 0.00 3.96
356 357 8.752005 ATAGCCAATATGCTAGTTCTCAAAAA 57.248 30.769 1.76 0.00 46.31 1.94
357 358 7.992608 TGATAGCCAATATGCTAGTTCTCAAAA 59.007 33.333 1.76 0.00 46.31 2.44
358 359 7.508687 TGATAGCCAATATGCTAGTTCTCAAA 58.491 34.615 1.76 0.00 46.31 2.69
359 360 7.066307 TGATAGCCAATATGCTAGTTCTCAA 57.934 36.000 1.76 0.00 46.31 3.02
360 361 6.670695 TGATAGCCAATATGCTAGTTCTCA 57.329 37.500 1.76 0.00 46.31 3.27
361 362 7.102346 ACATGATAGCCAATATGCTAGTTCTC 58.898 38.462 0.00 0.00 46.31 2.87
362 363 7.013823 ACATGATAGCCAATATGCTAGTTCT 57.986 36.000 0.00 0.00 46.31 3.01
363 364 6.875726 TGACATGATAGCCAATATGCTAGTTC 59.124 38.462 0.00 0.00 46.31 3.01
364 365 6.772605 TGACATGATAGCCAATATGCTAGTT 58.227 36.000 0.00 0.00 46.31 2.24
365 366 6.364568 TGACATGATAGCCAATATGCTAGT 57.635 37.500 0.00 0.00 46.31 2.57
366 367 7.046033 TGATGACATGATAGCCAATATGCTAG 58.954 38.462 0.00 0.00 46.31 3.42
367 368 7.571025 ATGATGACATGATAGCCAATATGCTA 58.429 34.615 0.00 0.00 40.41 3.49
368 369 5.812286 TGATGACATGATAGCCAATATGCT 58.188 37.500 0.00 0.00 45.38 3.79
369 370 6.694877 ATGATGACATGATAGCCAATATGC 57.305 37.500 0.00 0.00 35.21 3.14
374 375 9.962809 TCAATATAATGATGACATGATAGCCAA 57.037 29.630 0.00 0.00 34.45 4.52
375 376 9.962809 TTCAATATAATGATGACATGATAGCCA 57.037 29.630 0.00 0.00 34.45 4.75
379 380 9.399797 GCCCTTCAATATAATGATGACATGATA 57.600 33.333 0.00 0.00 35.17 2.15
380 381 7.341256 GGCCCTTCAATATAATGATGACATGAT 59.659 37.037 0.00 0.00 36.79 2.45
381 382 6.660521 GGCCCTTCAATATAATGATGACATGA 59.339 38.462 0.00 0.00 36.79 3.07
382 383 6.127535 GGGCCCTTCAATATAATGATGACATG 60.128 42.308 17.04 0.00 36.79 3.21
383 384 5.954150 GGGCCCTTCAATATAATGATGACAT 59.046 40.000 17.04 0.00 38.50 3.06
384 385 5.324409 GGGCCCTTCAATATAATGATGACA 58.676 41.667 17.04 0.00 0.00 3.58
385 386 4.706962 GGGGCCCTTCAATATAATGATGAC 59.293 45.833 24.38 0.00 0.00 3.06
386 387 4.607584 AGGGGCCCTTCAATATAATGATGA 59.392 41.667 22.67 0.00 0.00 2.92
387 388 4.939255 AGGGGCCCTTCAATATAATGATG 58.061 43.478 22.67 0.00 0.00 3.07
388 389 6.734918 TTAGGGGCCCTTCAATATAATGAT 57.265 37.500 33.98 2.88 34.61 2.45
389 390 6.734918 ATTAGGGGCCCTTCAATATAATGA 57.265 37.500 33.98 4.42 34.61 2.57
390 391 7.797121 AAATTAGGGGCCCTTCAATATAATG 57.203 36.000 33.98 0.00 34.61 1.90
391 392 9.547279 CTAAAATTAGGGGCCCTTCAATATAAT 57.453 33.333 33.98 19.41 34.61 1.28
392 393 8.516198 ACTAAAATTAGGGGCCCTTCAATATAA 58.484 33.333 33.98 17.81 34.61 0.98
393 394 8.064219 ACTAAAATTAGGGGCCCTTCAATATA 57.936 34.615 33.98 18.75 34.61 0.86
394 395 6.933894 ACTAAAATTAGGGGCCCTTCAATAT 58.066 36.000 33.98 18.64 34.61 1.28
395 396 6.349897 ACTAAAATTAGGGGCCCTTCAATA 57.650 37.500 33.98 16.33 34.61 1.90
396 397 5.220872 ACTAAAATTAGGGGCCCTTCAAT 57.779 39.130 33.98 22.60 34.61 2.57
397 398 4.685513 ACTAAAATTAGGGGCCCTTCAA 57.314 40.909 33.98 21.18 34.61 2.69
398 399 4.685513 AACTAAAATTAGGGGCCCTTCA 57.314 40.909 33.98 19.08 34.61 3.02
399 400 5.730550 CAAAACTAAAATTAGGGGCCCTTC 58.269 41.667 33.98 5.67 34.61 3.46
400 401 4.019681 GCAAAACTAAAATTAGGGGCCCTT 60.020 41.667 33.98 18.75 34.61 3.95
401 402 3.517901 GCAAAACTAAAATTAGGGGCCCT 59.482 43.478 31.38 31.38 37.71 5.19
402 403 3.370103 GGCAAAACTAAAATTAGGGGCCC 60.370 47.826 17.12 17.12 33.97 5.80
403 404 3.370103 GGGCAAAACTAAAATTAGGGGCC 60.370 47.826 0.00 0.00 36.62 5.80
404 405 3.677700 CGGGCAAAACTAAAATTAGGGGC 60.678 47.826 5.27 4.09 35.08 5.80
405 406 3.118920 CCGGGCAAAACTAAAATTAGGGG 60.119 47.826 0.00 0.00 35.08 4.79
406 407 3.118920 CCCGGGCAAAACTAAAATTAGGG 60.119 47.826 8.08 0.00 35.08 3.53
407 408 3.677700 GCCCGGGCAAAACTAAAATTAGG 60.678 47.826 40.73 0.00 41.49 2.69
408 409 3.517602 GCCCGGGCAAAACTAAAATTAG 58.482 45.455 40.73 0.00 41.49 1.73
409 410 2.234168 GGCCCGGGCAAAACTAAAATTA 59.766 45.455 44.46 0.00 44.11 1.40
410 411 1.002659 GGCCCGGGCAAAACTAAAATT 59.997 47.619 44.46 0.00 44.11 1.82
411 412 0.611200 GGCCCGGGCAAAACTAAAAT 59.389 50.000 44.46 0.00 44.11 1.82
412 413 1.473497 GGGCCCGGGCAAAACTAAAA 61.473 55.000 44.46 0.00 44.11 1.52
413 414 1.909287 GGGCCCGGGCAAAACTAAA 60.909 57.895 44.46 0.00 44.11 1.85
414 415 2.283316 GGGCCCGGGCAAAACTAA 60.283 61.111 44.46 0.00 44.11 2.24
415 416 4.369837 GGGGCCCGGGCAAAACTA 62.370 66.667 44.46 0.00 44.11 2.24
418 419 4.880426 TTTGGGGCCCGGGCAAAA 62.880 61.111 44.46 34.62 44.11 2.44
419 420 4.880426 TTTTGGGGCCCGGGCAAA 62.880 61.111 44.46 32.61 44.11 3.68
420 421 2.748641 TAATTTTGGGGCCCGGGCAA 62.749 55.000 44.46 30.55 44.11 4.52
421 422 2.748641 TTAATTTTGGGGCCCGGGCA 62.749 55.000 44.46 25.66 44.11 5.36
422 423 1.966901 CTTAATTTTGGGGCCCGGGC 61.967 60.000 38.57 38.57 41.06 6.13
423 424 0.324830 TCTTAATTTTGGGGCCCGGG 60.325 55.000 19.09 19.09 0.00 5.73
424 425 0.821517 GTCTTAATTTTGGGGCCCGG 59.178 55.000 19.83 0.00 0.00 5.73
425 426 0.821517 GGTCTTAATTTTGGGGCCCG 59.178 55.000 19.83 0.00 0.00 6.13
426 427 0.821517 CGGTCTTAATTTTGGGGCCC 59.178 55.000 18.17 18.17 0.00 5.80
427 428 0.821517 CCGGTCTTAATTTTGGGGCC 59.178 55.000 0.00 0.00 0.00 5.80
428 429 0.174845 GCCGGTCTTAATTTTGGGGC 59.825 55.000 1.90 0.00 0.00 5.80
429 430 0.821517 GGCCGGTCTTAATTTTGGGG 59.178 55.000 1.90 0.00 0.00 4.96
430 431 0.821517 GGGCCGGTCTTAATTTTGGG 59.178 55.000 5.77 0.00 0.00 4.12
431 432 1.476488 CAGGGCCGGTCTTAATTTTGG 59.524 52.381 5.77 0.00 0.00 3.28
432 433 1.135112 GCAGGGCCGGTCTTAATTTTG 60.135 52.381 5.77 0.00 0.00 2.44
433 434 1.182667 GCAGGGCCGGTCTTAATTTT 58.817 50.000 5.77 0.00 0.00 1.82
434 435 0.331616 AGCAGGGCCGGTCTTAATTT 59.668 50.000 5.77 0.00 0.00 1.82
435 436 0.107165 GAGCAGGGCCGGTCTTAATT 60.107 55.000 5.77 0.00 0.00 1.40
436 437 1.271840 TGAGCAGGGCCGGTCTTAAT 61.272 55.000 21.71 0.00 34.46 1.40
437 438 1.899437 CTGAGCAGGGCCGGTCTTAA 61.899 60.000 21.71 7.26 34.46 1.85
438 439 2.284331 TGAGCAGGGCCGGTCTTA 60.284 61.111 21.71 8.28 34.46 2.10
439 440 3.710722 CTGAGCAGGGCCGGTCTT 61.711 66.667 21.71 0.00 34.46 3.01
448 449 4.711949 ACTTGGCCGCTGAGCAGG 62.712 66.667 4.88 8.13 0.00 4.85
449 450 3.429141 CACTTGGCCGCTGAGCAG 61.429 66.667 4.88 0.00 0.00 4.24
450 451 3.939939 TCACTTGGCCGCTGAGCA 61.940 61.111 4.88 0.00 0.00 4.26
451 452 3.426568 GTCACTTGGCCGCTGAGC 61.427 66.667 0.00 0.00 0.00 4.26
452 453 3.114616 CGTCACTTGGCCGCTGAG 61.115 66.667 0.00 0.00 0.00 3.35
457 458 4.465512 GCATGCGTCACTTGGCCG 62.466 66.667 0.00 0.00 0.00 6.13
458 459 2.703798 ATGCATGCGTCACTTGGCC 61.704 57.895 14.09 0.00 0.00 5.36
459 460 1.515519 CATGCATGCGTCACTTGGC 60.516 57.895 14.93 0.00 0.00 4.52
460 461 1.515519 GCATGCATGCGTCACTTGG 60.516 57.895 33.99 2.26 44.67 3.61
461 462 4.066769 GCATGCATGCGTCACTTG 57.933 55.556 33.99 4.73 44.67 3.16
470 471 3.646976 CGAGCTCCGGCATGCATG 61.647 66.667 22.70 22.70 41.70 4.06
481 482 3.842923 TAGCTGGCTGCCGAGCTC 61.843 66.667 33.51 15.12 44.55 4.09
483 484 4.457496 TGTAGCTGGCTGCCGAGC 62.457 66.667 25.69 25.69 45.40 5.03
484 485 2.510238 GTGTAGCTGGCTGCCGAG 60.510 66.667 14.98 13.26 44.23 4.63
485 486 3.310307 TGTGTAGCTGGCTGCCGA 61.310 61.111 14.98 2.35 44.23 5.54
486 487 3.121030 GTGTGTAGCTGGCTGCCG 61.121 66.667 14.98 10.05 44.23 5.69
487 488 2.032528 TGTGTGTAGCTGGCTGCC 59.967 61.111 12.87 12.87 44.23 4.85
488 489 2.671177 CGTGTGTGTAGCTGGCTGC 61.671 63.158 8.47 8.47 43.29 5.25
489 490 2.671177 GCGTGTGTGTAGCTGGCTG 61.671 63.158 5.25 0.00 0.00 4.85
490 491 2.357517 GCGTGTGTGTAGCTGGCT 60.358 61.111 0.00 0.00 0.00 4.75
491 492 2.664851 TGCGTGTGTGTAGCTGGC 60.665 61.111 0.00 0.00 0.00 4.85
492 493 2.657757 CGTGCGTGTGTGTAGCTGG 61.658 63.158 0.00 0.00 0.00 4.85
493 494 2.657757 CCGTGCGTGTGTGTAGCTG 61.658 63.158 0.00 0.00 0.00 4.24
494 495 2.355837 CCGTGCGTGTGTGTAGCT 60.356 61.111 0.00 0.00 0.00 3.32
495 496 1.886861 CTTCCGTGCGTGTGTGTAGC 61.887 60.000 0.00 0.00 0.00 3.58
496 497 0.318360 TCTTCCGTGCGTGTGTGTAG 60.318 55.000 0.00 0.00 0.00 2.74
497 498 0.318360 CTCTTCCGTGCGTGTGTGTA 60.318 55.000 0.00 0.00 0.00 2.90
498 499 1.591594 CTCTTCCGTGCGTGTGTGT 60.592 57.895 0.00 0.00 0.00 3.72
499 500 2.310233 CCTCTTCCGTGCGTGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
500 501 2.029073 CCTCTTCCGTGCGTGTGT 59.971 61.111 0.00 0.00 0.00 3.72
501 502 2.029073 ACCTCTTCCGTGCGTGTG 59.971 61.111 0.00 0.00 0.00 3.82
502 503 2.029073 CACCTCTTCCGTGCGTGT 59.971 61.111 0.00 0.00 0.00 4.49
503 504 2.738521 CCACCTCTTCCGTGCGTG 60.739 66.667 0.00 0.00 0.00 5.34
504 505 4.681978 GCCACCTCTTCCGTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
505 506 4.379243 AGCCACCTCTTCCGTGCG 62.379 66.667 0.00 0.00 0.00 5.34
506 507 2.435059 GAGCCACCTCTTCCGTGC 60.435 66.667 0.00 0.00 35.16 5.34
507 508 2.125912 CGAGCCACCTCTTCCGTG 60.126 66.667 0.00 0.00 35.90 4.94
508 509 3.382832 CCGAGCCACCTCTTCCGT 61.383 66.667 0.00 0.00 35.90 4.69
509 510 4.821589 GCCGAGCCACCTCTTCCG 62.822 72.222 0.00 0.00 35.90 4.30
510 511 4.821589 CGCCGAGCCACCTCTTCC 62.822 72.222 0.00 0.00 35.90 3.46
511 512 4.821589 CCGCCGAGCCACCTCTTC 62.822 72.222 0.00 0.00 35.90 2.87
540 541 4.077188 GTGTTCTCGCTGCGTGCC 62.077 66.667 22.48 13.19 38.78 5.01
541 542 4.077188 GGTGTTCTCGCTGCGTGC 62.077 66.667 22.48 8.24 38.57 5.34
542 543 3.767230 CGGTGTTCTCGCTGCGTG 61.767 66.667 22.48 19.65 0.00 5.34
567 568 0.813821 TCATGCTCTCACGGAGACTG 59.186 55.000 0.11 0.46 44.45 3.51
586 587 3.807071 GGTTTCATGTGGAATTTGCGTTT 59.193 39.130 0.00 0.00 34.91 3.60
634 640 2.909965 AGATCTCTCCGCCTCCGC 60.910 66.667 0.00 0.00 0.00 5.54
635 641 2.560119 CCAGATCTCTCCGCCTCCG 61.560 68.421 0.00 0.00 0.00 4.63
637 643 0.887933 GATCCAGATCTCTCCGCCTC 59.112 60.000 0.00 0.00 35.04 4.70
638 644 0.541764 GGATCCAGATCTCTCCGCCT 60.542 60.000 6.95 0.00 37.92 5.52
640 646 1.000731 CTTGGATCCAGATCTCTCCGC 59.999 57.143 15.53 0.00 37.92 5.54
670 676 6.201806 GTCAAAGGGTCGATCAATTCATAGAG 59.798 42.308 0.00 0.00 0.00 2.43
676 682 3.343617 TGGTCAAAGGGTCGATCAATTC 58.656 45.455 0.00 0.00 0.00 2.17
677 683 3.433306 TGGTCAAAGGGTCGATCAATT 57.567 42.857 0.00 0.00 0.00 2.32
708 740 3.814283 GCGTACATAGTAGACCTAGCTGT 59.186 47.826 0.00 0.00 0.00 4.40
709 741 3.188873 GGCGTACATAGTAGACCTAGCTG 59.811 52.174 0.00 0.00 0.00 4.24
716 748 1.002033 CGGGTGGCGTACATAGTAGAC 60.002 57.143 0.00 0.00 0.00 2.59
719 751 0.106769 TCCGGGTGGCGTACATAGTA 60.107 55.000 0.00 0.00 34.14 1.82
745 777 5.070685 AGTCCACGATGATATGCACTAGTA 58.929 41.667 0.00 0.00 0.00 1.82
831 904 2.693074 GTTTTTGGCAGGAAGTGGAAGA 59.307 45.455 0.00 0.00 0.00 2.87
880 953 2.033049 ACAGTGTGTGTACGTGAGAGAC 59.967 50.000 0.00 0.00 37.75 3.36
897 973 1.840737 ACTGTGGCTAGATCGACAGT 58.159 50.000 10.83 10.83 43.28 3.55
898 974 1.800655 GCACTGTGGCTAGATCGACAG 60.801 57.143 10.21 9.80 41.37 3.51
899 975 0.173481 GCACTGTGGCTAGATCGACA 59.827 55.000 10.21 0.00 0.00 4.35
900 976 0.457851 AGCACTGTGGCTAGATCGAC 59.542 55.000 10.21 0.00 43.70 4.20
937 1014 1.099879 CAGGTGCCATTGCTAGCTCC 61.100 60.000 17.23 6.94 41.82 4.70
958 1035 1.293179 CTGTGCTGTGGTCGATCCA 59.707 57.895 0.00 0.00 45.01 3.41
959 1036 2.103042 GCTGTGCTGTGGTCGATCC 61.103 63.158 0.00 0.00 0.00 3.36
980 1067 2.397044 TTTGGAATTTGGACTGGCCT 57.603 45.000 3.32 0.00 37.63 5.19
1021 1108 2.024871 CGAGATGGCGACGAGGAC 59.975 66.667 0.00 0.00 0.00 3.85
1033 1120 1.018226 GCAAGCACACAGAGCGAGAT 61.018 55.000 0.00 0.00 37.01 2.75
1110 1206 3.075005 GTAGAGGGAGGTGCGGCA 61.075 66.667 0.00 0.00 0.00 5.69
1155 1259 4.803426 GTCGAGGACCAGCGGCAG 62.803 72.222 1.45 0.00 31.48 4.85
1424 1528 4.295199 GGGCCCAACGGGTTCCTT 62.295 66.667 19.95 0.00 46.51 3.36
1474 1578 1.550130 CCCCGCTAACAAGGAGTCCA 61.550 60.000 12.86 0.00 0.00 4.02
1544 1657 2.896443 GAGACCTGAGCGGGGAAG 59.104 66.667 0.00 0.00 36.97 3.46
1785 1916 0.963856 ATGGTGAGAGGTGCGTACGA 60.964 55.000 21.65 0.80 0.00 3.43
1796 1933 1.361204 TGGAGAAGCCAATGGTGAGA 58.639 50.000 0.00 0.00 45.87 3.27
1997 2156 3.923864 AGCTCGACCGTTGGCACA 61.924 61.111 0.00 0.00 0.00 4.57
2012 2171 3.207669 CCGCCTTCCAGCATCAGC 61.208 66.667 0.00 0.00 42.56 4.26
2153 2318 3.530910 AAACCCTCCGAGCACCACG 62.531 63.158 0.00 0.00 0.00 4.94
2171 2336 3.545724 CAGGTTCTGCTGCATCTGA 57.454 52.632 1.31 0.00 0.00 3.27
2193 2358 0.888619 TGCTTCTCCTCGTCGAACAT 59.111 50.000 0.00 0.00 0.00 2.71
2264 2432 2.729467 CGCGGGCATCGTAAAATTGAAA 60.729 45.455 0.00 0.00 41.72 2.69
2285 2453 2.685897 TGAACTTGCAACACCAGGTTAC 59.314 45.455 0.00 0.00 37.72 2.50
2380 2556 4.383774 TTCACAGAGTATTTTGTTCGCG 57.616 40.909 0.00 0.00 0.00 5.87
2535 2730 3.091545 ACCAGGGCAGTACATCAATTTG 58.908 45.455 0.00 0.00 0.00 2.32
2537 2732 3.456380 AACCAGGGCAGTACATCAATT 57.544 42.857 0.00 0.00 0.00 2.32
2544 2739 3.532542 GACTGATAAACCAGGGCAGTAC 58.467 50.000 0.00 0.00 39.68 2.73
2549 2744 1.134068 GGAGGACTGATAAACCAGGGC 60.134 57.143 0.00 0.00 38.44 5.19
2550 2745 2.436173 GAGGAGGACTGATAAACCAGGG 59.564 54.545 0.00 0.00 38.44 4.45
2561 2762 4.038042 TGACGCTAAATATGAGGAGGACTG 59.962 45.833 0.00 0.00 0.00 3.51
2624 2825 9.887629 AACAAAATATTAATGCATGTCATCCAA 57.112 25.926 0.00 0.00 33.40 3.53
2678 2879 6.941857 TGTTTATTGCCCCCTTCTTATTTTC 58.058 36.000 0.00 0.00 0.00 2.29
2689 2890 0.815095 CCGTCTTGTTTATTGCCCCC 59.185 55.000 0.00 0.00 0.00 5.40
2701 2902 9.751542 AAATTATCAACTACTATCTCCGTCTTG 57.248 33.333 0.00 0.00 0.00 3.02
2703 2904 9.132923 TGAAATTATCAACTACTATCTCCGTCT 57.867 33.333 0.00 0.00 34.30 4.18
2765 2968 3.632604 TGCGGACACCAGTGAAAAATAAA 59.367 39.130 4.48 0.00 0.00 1.40
2768 2971 1.686355 TGCGGACACCAGTGAAAAAT 58.314 45.000 4.48 0.00 0.00 1.82
2805 3009 2.236766 CTCCCTCCATGGCAAATGATC 58.763 52.381 6.96 0.00 0.00 2.92
2825 3029 0.907230 AGTCCCCTCAGCCTCTTGAC 60.907 60.000 0.00 0.00 0.00 3.18
2891 3096 1.860078 CGGGTTGCTTGAAGTCGAC 59.140 57.895 7.70 7.70 0.00 4.20
2913 3118 1.000506 ACTACCGCGAGTTGACATTGT 59.999 47.619 8.23 0.00 0.00 2.71
2927 3132 6.982852 AGAGATACCATGATTGTTACTACCG 58.017 40.000 0.00 0.00 0.00 4.02
2929 3134 9.900710 CAGTAGAGATACCATGATTGTTACTAC 57.099 37.037 0.00 0.00 0.00 2.73
2960 3165 7.362056 GGTTCAGTAACACATAATTGAGCACAT 60.362 37.037 0.00 0.00 37.34 3.21
2972 3177 5.221925 ACCAAGATCAGGTTCAGTAACACAT 60.222 40.000 4.17 0.00 35.33 3.21
2973 3184 4.102524 ACCAAGATCAGGTTCAGTAACACA 59.897 41.667 4.17 0.00 35.33 3.72
3202 3417 8.902735 GGTCTTAAAAAGAAAGCAATAGAAACG 58.097 33.333 0.00 0.00 39.67 3.60
3244 3460 1.134907 CCTTGTGAATGCCTCAATGCC 60.135 52.381 0.00 0.00 35.22 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.