Multiple sequence alignment - TraesCS3B01G514500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G514500 chr3B 100.000 3327 0 0 1 3327 757278776 757282102 0.000000e+00 6144.0
1 TraesCS3B01G514500 chr3B 81.989 1488 214 32 961 2422 757457413 757455954 0.000000e+00 1214.0
2 TraesCS3B01G514500 chr3B 81.233 1103 161 28 961 2037 757286644 757285562 0.000000e+00 848.0
3 TraesCS3B01G514500 chr3B 84.974 193 18 8 1 186 821442024 821441836 5.670000e-43 185.0
4 TraesCS3B01G514500 chr3B 82.353 187 22 9 6 185 159958538 159958720 5.750000e-33 152.0
5 TraesCS3B01G514500 chr3B 80.000 110 18 3 1142 1249 757708172 757708279 9.900000e-11 78.7
6 TraesCS3B01G514500 chr3B 94.595 37 2 0 2771 2807 754719675 754719639 1.290000e-04 58.4
7 TraesCS3B01G514500 chr3D 90.649 2588 166 28 1 2559 570269962 570272502 0.000000e+00 3369.0
8 TraesCS3B01G514500 chr3D 87.553 474 32 9 2614 3086 570273004 570273451 1.060000e-144 523.0
9 TraesCS3B01G514500 chr3D 75.223 1235 226 56 1060 2262 569976371 569977557 2.290000e-141 512.0
10 TraesCS3B01G514500 chr3D 94.595 37 2 0 2771 2807 566132335 566132371 1.290000e-04 58.4
11 TraesCS3B01G514500 chr3A 88.292 1136 88 19 1577 2709 703015180 703016273 0.000000e+00 1319.0
12 TraesCS3B01G514500 chr3A 82.432 1480 204 27 961 2422 703134901 703133460 0.000000e+00 1242.0
13 TraesCS3B01G514500 chr3A 91.822 807 46 6 775 1578 703006347 703007136 0.000000e+00 1107.0
14 TraesCS3B01G514500 chr3A 75.082 1216 216 61 1090 2262 702570426 702571597 1.390000e-133 486.0
15 TraesCS3B01G514500 chr3A 90.415 313 27 3 466 776 703002706 703003017 3.090000e-110 409.0
16 TraesCS3B01G514500 chr3A 88.421 285 24 5 2808 3086 703035074 703035355 5.320000e-88 335.0
17 TraesCS3B01G514500 chr3A 93.939 165 7 1 3163 3327 703096640 703096801 2.560000e-61 246.0
18 TraesCS3B01G514500 chr3A 81.818 187 23 9 6 185 743234119 743234301 2.670000e-31 147.0
19 TraesCS3B01G514500 chr3A 81.383 188 23 10 6 185 740512023 740511840 3.460000e-30 143.0
20 TraesCS3B01G514500 chr7A 92.896 183 13 0 214 396 514661035 514660853 1.970000e-67 267.0
21 TraesCS3B01G514500 chr7A 87.791 172 14 2 20 187 514661261 514661093 9.420000e-46 195.0
22 TraesCS3B01G514500 chr7A 92.500 40 1 2 2771 2808 709354743 709354782 4.640000e-04 56.5
23 TraesCS3B01G514500 chr2D 91.304 184 14 2 214 396 624242123 624242305 1.980000e-62 250.0
24 TraesCS3B01G514500 chr2D 87.845 181 22 0 216 396 629198714 629198534 2.600000e-51 213.0
25 TraesCS3B01G514500 chr2D 86.957 184 23 1 214 396 169594820 169595003 4.350000e-49 206.0
26 TraesCS3B01G514500 chr2D 94.737 38 0 2 2772 2808 645531863 645531827 1.290000e-04 58.4
27 TraesCS3B01G514500 chr5D 90.860 186 15 2 214 398 485119496 485119312 7.130000e-62 248.0
28 TraesCS3B01G514500 chr5D 88.235 187 21 1 214 399 482319254 482319068 4.320000e-54 222.0
29 TraesCS3B01G514500 chr5D 87.568 185 20 3 214 396 23170626 23170809 9.350000e-51 211.0
30 TraesCS3B01G514500 chr5D 83.146 178 15 5 22 187 423191598 423191424 7.440000e-32 148.0
31 TraesCS3B01G514500 chrUn 87.629 194 14 6 1 187 19826216 19826026 2.010000e-52 217.0
32 TraesCS3B01G514500 chrUn 84.211 190 21 5 1 184 100188869 100188683 3.410000e-40 176.0
33 TraesCS3B01G514500 chr1D 86.957 184 22 2 214 396 38794594 38794776 4.350000e-49 206.0
34 TraesCS3B01G514500 chr2A 84.884 172 20 4 19 187 702571094 702570926 5.710000e-38 169.0
35 TraesCS3B01G514500 chr5A 79.787 188 24 14 6 185 520444334 520444515 1.250000e-24 124.0
36 TraesCS3B01G514500 chr4A 94.872 39 0 2 2770 2807 584523779 584523742 3.580000e-05 60.2
37 TraesCS3B01G514500 chr7D 94.595 37 2 0 2771 2807 1299132 1299168 1.290000e-04 58.4
38 TraesCS3B01G514500 chr7D 92.500 40 1 2 2771 2808 616463354 616463393 4.640000e-04 56.5
39 TraesCS3B01G514500 chr4B 94.737 38 1 1 2771 2807 70561870 70561833 1.290000e-04 58.4
40 TraesCS3B01G514500 chr6B 92.500 40 2 1 2770 2808 239055354 239055315 4.640000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G514500 chr3B 757278776 757282102 3326 False 6144 6144 100.0000 1 3327 1 chr3B.!!$F2 3326
1 TraesCS3B01G514500 chr3B 757455954 757457413 1459 True 1214 1214 81.9890 961 2422 1 chr3B.!!$R3 1461
2 TraesCS3B01G514500 chr3B 757285562 757286644 1082 True 848 848 81.2330 961 2037 1 chr3B.!!$R2 1076
3 TraesCS3B01G514500 chr3D 570269962 570273451 3489 False 1946 3369 89.1010 1 3086 2 chr3D.!!$F3 3085
4 TraesCS3B01G514500 chr3D 569976371 569977557 1186 False 512 512 75.2230 1060 2262 1 chr3D.!!$F2 1202
5 TraesCS3B01G514500 chr3A 703015180 703016273 1093 False 1319 1319 88.2920 1577 2709 1 chr3A.!!$F2 1132
6 TraesCS3B01G514500 chr3A 703133460 703134901 1441 True 1242 1242 82.4320 961 2422 1 chr3A.!!$R1 1461
7 TraesCS3B01G514500 chr3A 703002706 703007136 4430 False 758 1107 91.1185 466 1578 2 chr3A.!!$F6 1112
8 TraesCS3B01G514500 chr3A 702570426 702571597 1171 False 486 486 75.0820 1090 2262 1 chr3A.!!$F1 1172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 684 0.109597 GTTCTTGATGCAGGCGTTGG 60.110 55.0 0.0 0.0 0.0 3.77 F
897 4247 0.299895 CGCAGACTCATCGTTCATGC 59.700 55.0 0.0 0.0 31.7 4.06 F
2165 5605 0.034477 CGGGAACAAGGCTGGGTATT 60.034 55.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 5586 0.034477 AATACCCAGCCTTGTTCCCG 60.034 55.0 0.0 0.0 0.00 5.14 R
2206 5646 0.381089 GCAGCATGTTCTCCATCTGC 59.619 55.0 0.0 0.0 42.22 4.26 R
3153 7056 0.104120 TATGCGGGGTCATCGAGTTG 59.896 55.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.778534 AATGTTGCTTTGAGATCTGTGG 57.221 40.909 0.00 0.00 0.00 4.17
66 67 9.084164 GTACACAATTAACTCACTACTACATGG 57.916 37.037 0.00 0.00 0.00 3.66
75 76 8.779354 AACTCACTACTACATGGAATTTTCTC 57.221 34.615 0.00 0.00 0.00 2.87
78 79 9.442047 CTCACTACTACATGGAATTTTCTCTTT 57.558 33.333 0.00 0.00 0.00 2.52
134 145 3.077229 TGCAGGACAACAAAACATTCG 57.923 42.857 0.00 0.00 0.00 3.34
141 152 6.202188 CAGGACAACAAAACATTCGTACTACT 59.798 38.462 0.00 0.00 0.00 2.57
161 172 8.617290 ACTACTATGTGGGTAAAAACTTTCAG 57.383 34.615 0.00 0.00 0.00 3.02
188 199 7.481275 TTTTTCGTCCGACATAAATATACCC 57.519 36.000 0.00 0.00 0.00 3.69
189 200 5.787953 TTCGTCCGACATAAATATACCCA 57.212 39.130 0.00 0.00 0.00 4.51
190 201 5.787953 TCGTCCGACATAAATATACCCAA 57.212 39.130 0.00 0.00 0.00 4.12
191 202 6.159299 TCGTCCGACATAAATATACCCAAA 57.841 37.500 0.00 0.00 0.00 3.28
192 203 6.218019 TCGTCCGACATAAATATACCCAAAG 58.782 40.000 0.00 0.00 0.00 2.77
193 204 5.987347 CGTCCGACATAAATATACCCAAAGT 59.013 40.000 0.00 0.00 0.00 2.66
194 205 6.073980 CGTCCGACATAAATATACCCAAAGTG 60.074 42.308 0.00 0.00 0.00 3.16
219 230 7.011950 TGACAAAACATACGAACTTCAATCTGT 59.988 33.333 0.00 0.00 0.00 3.41
279 290 4.741676 GTCCTGCAAAGTTTCAAGTTCATG 59.258 41.667 0.00 0.00 0.00 3.07
375 386 1.908299 GGGGGTGTTCCAAAGCCTG 60.908 63.158 0.00 0.00 37.22 4.85
417 428 3.724733 AATGGGGGCGGCTAGGGTA 62.725 63.158 9.56 0.00 0.00 3.69
459 470 2.998097 CCGGATTTGGCCCTCAGA 59.002 61.111 0.00 0.00 0.00 3.27
460 471 1.533711 CCGGATTTGGCCCTCAGAT 59.466 57.895 0.00 0.00 0.00 2.90
463 474 1.169034 GGATTTGGCCCTCAGATCGC 61.169 60.000 0.00 0.00 37.73 4.58
464 475 0.464373 GATTTGGCCCTCAGATCGCA 60.464 55.000 0.00 0.00 29.17 5.10
532 544 0.248866 CCGCAAACCGCTGAGTTTTT 60.249 50.000 0.00 0.00 37.87 1.94
553 565 2.507058 TGCATGAGCCTATCCTTCAGTT 59.493 45.455 0.00 0.00 41.13 3.16
597 609 1.701847 GATCCTATGTCTGCCCCATGT 59.298 52.381 0.00 0.00 0.00 3.21
598 610 0.839277 TCCTATGTCTGCCCCATGTG 59.161 55.000 0.00 0.00 0.00 3.21
634 646 0.761702 GGGGCCGGACAACCTAGATA 60.762 60.000 11.00 0.00 0.00 1.98
643 655 3.446516 GGACAACCTAGATACTTGGTCGT 59.553 47.826 5.50 1.14 38.53 4.34
656 668 3.492011 ACTTGGTCGTATTTGTGACGTTC 59.508 43.478 0.00 0.00 41.11 3.95
659 671 3.491639 TGGTCGTATTTGTGACGTTCTTG 59.508 43.478 0.00 0.00 41.11 3.02
672 684 0.109597 GTTCTTGATGCAGGCGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
695 707 2.900167 GCTTTTCGCCCGGACGTTT 61.900 57.895 10.78 0.00 0.00 3.60
704 716 0.953003 CCCGGACGTTTAGGCAAAAA 59.047 50.000 0.73 0.00 0.00 1.94
726 738 5.700402 ATAAGGTCAGGTTGTAGATGCTT 57.300 39.130 0.00 0.00 0.00 3.91
875 4225 3.087031 TGTACGGAGCAGTAAACTAGCT 58.913 45.455 0.00 0.00 42.17 3.32
876 4226 4.264253 TGTACGGAGCAGTAAACTAGCTA 58.736 43.478 0.00 0.00 39.02 3.32
877 4227 4.334759 TGTACGGAGCAGTAAACTAGCTAG 59.665 45.833 19.44 19.44 39.02 3.42
878 4228 2.099427 ACGGAGCAGTAAACTAGCTAGC 59.901 50.000 20.91 6.62 39.02 3.42
897 4247 0.299895 CGCAGACTCATCGTTCATGC 59.700 55.000 0.00 0.00 31.70 4.06
1009 4362 2.358615 GCACCTCGATGCACCACA 60.359 61.111 6.13 0.00 45.39 4.17
1010 4363 2.393768 GCACCTCGATGCACCACAG 61.394 63.158 6.13 0.00 45.39 3.66
1011 4364 2.046892 ACCTCGATGCACCACAGC 60.047 61.111 0.00 0.00 0.00 4.40
1153 4527 4.308458 CGGCCGTCACCAAGGACA 62.308 66.667 19.50 0.00 37.66 4.02
1171 4545 3.528370 CGGCCACCTCCCTCTACG 61.528 72.222 2.24 0.00 0.00 3.51
1188 4562 2.511600 GCCATCCCCGTCAAGTCG 60.512 66.667 0.00 0.00 0.00 4.18
1295 4675 3.557479 CATCGACTGCATGCGCGT 61.557 61.111 21.32 17.10 42.97 6.01
1410 4793 4.357947 GTCTCCGGCGACACAGCA 62.358 66.667 19.57 0.00 39.27 4.41
1440 4823 2.045242 ACCCGAGTAGCGCTCTCA 60.045 61.111 25.88 6.04 41.98 3.27
1488 4871 4.309950 GGCCCGGTGTCGTTCACT 62.310 66.667 0.00 0.00 45.50 3.41
1503 4886 1.004560 CACTGCCGTGACATCCTGT 60.005 57.895 1.41 0.00 43.97 4.00
1536 4919 3.077556 CTACAGGGTCTGCCGGCT 61.078 66.667 29.70 6.93 34.37 5.52
1770 5183 2.564947 CTCCCCTGGCTACTACATCATC 59.435 54.545 0.00 0.00 0.00 2.92
1851 5270 3.518998 ATCGGCCTCTCCACGACG 61.519 66.667 0.00 0.00 39.64 5.12
1852 5271 3.989838 ATCGGCCTCTCCACGACGA 62.990 63.158 0.00 0.00 39.64 4.20
1853 5272 4.477975 CGGCCTCTCCACGACGAC 62.478 72.222 0.00 0.00 34.01 4.34
1854 5273 4.477975 GGCCTCTCCACGACGACG 62.478 72.222 5.58 5.58 45.75 5.12
1855 5274 4.477975 GCCTCTCCACGACGACGG 62.478 72.222 12.58 1.22 44.46 4.79
1856 5275 2.745100 CCTCTCCACGACGACGGA 60.745 66.667 12.58 6.21 44.46 4.69
1857 5276 2.479650 CTCTCCACGACGACGGAC 59.520 66.667 12.58 0.00 44.46 4.79
1877 5296 2.683933 CCCCCTACACGGAGCTGT 60.684 66.667 0.00 0.00 33.16 4.40
2146 5586 1.281899 CTTTCGTCGAGATGAAGGCC 58.718 55.000 0.00 0.00 37.59 5.19
2165 5605 0.034477 CGGGAACAAGGCTGGGTATT 60.034 55.000 0.00 0.00 0.00 1.89
2206 5646 1.078426 GGTGGTCATCGGAGGGTTG 60.078 63.158 0.00 0.00 0.00 3.77
2337 5791 1.521681 CCGCCTAGCCTACTGTTGC 60.522 63.158 0.00 0.00 0.00 4.17
2342 5796 0.246635 CTAGCCTACTGTTGCGTGGT 59.753 55.000 0.00 0.00 0.00 4.16
2343 5797 0.245539 TAGCCTACTGTTGCGTGGTC 59.754 55.000 0.00 0.00 0.00 4.02
2344 5798 1.004918 GCCTACTGTTGCGTGGTCT 60.005 57.895 0.00 0.00 0.00 3.85
2345 5799 0.245539 GCCTACTGTTGCGTGGTCTA 59.754 55.000 0.00 0.00 0.00 2.59
2346 5800 1.337447 GCCTACTGTTGCGTGGTCTAA 60.337 52.381 0.00 0.00 0.00 2.10
2347 5801 2.677037 GCCTACTGTTGCGTGGTCTAAT 60.677 50.000 0.00 0.00 0.00 1.73
2348 5802 3.596214 CCTACTGTTGCGTGGTCTAATT 58.404 45.455 0.00 0.00 0.00 1.40
2349 5803 4.751060 CCTACTGTTGCGTGGTCTAATTA 58.249 43.478 0.00 0.00 0.00 1.40
2350 5804 5.172934 CCTACTGTTGCGTGGTCTAATTAA 58.827 41.667 0.00 0.00 0.00 1.40
2351 5805 5.815740 CCTACTGTTGCGTGGTCTAATTAAT 59.184 40.000 0.00 0.00 0.00 1.40
2352 5806 6.982141 CCTACTGTTGCGTGGTCTAATTAATA 59.018 38.462 0.00 0.00 0.00 0.98
2353 5807 7.656137 CCTACTGTTGCGTGGTCTAATTAATAT 59.344 37.037 0.00 0.00 0.00 1.28
2378 5832 3.505293 TCATTGTGTTGCATGGATTTCGA 59.495 39.130 0.00 0.00 0.00 3.71
2379 5833 3.998099 TTGTGTTGCATGGATTTCGAA 57.002 38.095 0.00 0.00 0.00 3.71
2470 5924 7.359933 CCATGCACCAAAATAAATTACACACAC 60.360 37.037 0.00 0.00 0.00 3.82
2491 5945 1.263776 CAAGCACGTCGAGATCTGAC 58.736 55.000 0.00 7.56 0.00 3.51
2531 5985 6.584563 CACAAAATTATTCCGTTGTACTTGGG 59.415 38.462 0.00 0.00 33.04 4.12
2546 6000 7.837202 TGTACTTGGGTATTTGACTATTTCG 57.163 36.000 0.00 0.00 0.00 3.46
2599 6468 3.866651 AGATTCCATCACCTTTCGTCAG 58.133 45.455 0.00 0.00 0.00 3.51
2686 6587 3.520691 AAAGAAAAGGGAGGTGGTACC 57.479 47.619 4.43 4.43 38.99 3.34
2750 6652 5.936956 TCCAATTAAATGGTGCCAAATCAAC 59.063 36.000 9.41 0.00 41.46 3.18
2755 6657 5.343307 AAATGGTGCCAAATCAACTATCC 57.657 39.130 0.00 0.00 0.00 2.59
2772 6674 5.063880 ACTATCCAAGTGTTGTCCTGAAAC 58.936 41.667 0.00 0.00 36.93 2.78
2783 6685 5.815740 TGTTGTCCTGAAACTTCAAGACTAC 59.184 40.000 19.88 19.88 45.73 2.73
2784 6686 5.871396 TGTCCTGAAACTTCAAGACTACT 57.129 39.130 17.71 0.00 44.84 2.57
2785 6687 5.844004 TGTCCTGAAACTTCAAGACTACTC 58.156 41.667 17.71 0.00 44.84 2.59
2786 6688 5.221461 TGTCCTGAAACTTCAAGACTACTCC 60.221 44.000 17.71 0.00 44.84 3.85
2787 6689 4.283722 TCCTGAAACTTCAAGACTACTCCC 59.716 45.833 0.00 0.00 36.64 4.30
2788 6690 4.284746 CCTGAAACTTCAAGACTACTCCCT 59.715 45.833 0.00 0.00 36.64 4.20
2789 6691 5.470047 TGAAACTTCAAGACTACTCCCTC 57.530 43.478 0.00 0.00 33.55 4.30
2790 6692 4.283722 TGAAACTTCAAGACTACTCCCTCC 59.716 45.833 0.00 0.00 33.55 4.30
2791 6693 2.448453 ACTTCAAGACTACTCCCTCCG 58.552 52.381 0.00 0.00 0.00 4.63
2792 6694 2.225066 ACTTCAAGACTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
2793 6695 2.125773 TCAAGACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
2794 6696 1.104630 CAAGACTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
2795 6697 0.033306 AAGACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
2796 6698 1.212934 AGACTACTCCCTCCGTCCCA 61.213 60.000 0.00 0.00 0.00 4.37
2797 6699 0.106116 GACTACTCCCTCCGTCCCAT 60.106 60.000 0.00 0.00 0.00 4.00
2798 6700 1.144503 GACTACTCCCTCCGTCCCATA 59.855 57.143 0.00 0.00 0.00 2.74
2799 6701 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2800 6702 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2801 6703 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2802 6704 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2803 6705 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2804 6706 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2805 6707 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2806 6708 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2818 6720 9.502091 TCCCATAATGTAAGATTATACAGTTGC 57.498 33.333 0.00 0.00 39.04 4.17
2819 6721 8.443160 CCCATAATGTAAGATTATACAGTTGCG 58.557 37.037 0.00 0.00 39.04 4.85
2847 6749 2.166459 TCGAGATGTTCTTTCGGCTGAT 59.834 45.455 0.00 0.00 35.21 2.90
2851 6753 1.159285 TGTTCTTTCGGCTGATGCTG 58.841 50.000 0.00 0.00 46.48 4.41
2858 6760 2.827642 GGCTGATGCTGTGGCTCC 60.828 66.667 0.00 0.00 39.59 4.70
2859 6761 2.045634 GCTGATGCTGTGGCTCCA 60.046 61.111 0.00 0.00 39.59 3.86
2867 6769 2.702708 TGCTGTGGCTCCAAAACATGG 61.703 52.381 0.00 0.00 42.79 3.66
2885 6787 5.574188 ACATGGTTTGCTCTTAGGAGAATT 58.426 37.500 5.96 0.00 41.86 2.17
2922 6824 0.586319 TTGTTGTGCGCTCTAACAGC 59.414 50.000 9.73 7.25 45.85 4.40
2986 6888 5.521372 ACGGGTATAGCTACAACGATTTTTC 59.479 40.000 13.61 0.00 35.24 2.29
3012 6914 3.179443 TGTTATTCCATGGAGCGAGAC 57.821 47.619 15.53 10.96 0.00 3.36
3019 6921 2.565391 TCCATGGAGCGAGACTTTGTAA 59.435 45.455 11.44 0.00 0.00 2.41
3021 6923 3.125316 CCATGGAGCGAGACTTTGTAAAC 59.875 47.826 5.56 0.00 0.00 2.01
3024 6926 2.798847 GGAGCGAGACTTTGTAAACGTT 59.201 45.455 0.00 0.00 0.00 3.99
3025 6927 3.983344 GGAGCGAGACTTTGTAAACGTTA 59.017 43.478 0.00 0.00 0.00 3.18
3053 6955 2.291475 TGAGCATGCCATTAGGGACAAA 60.291 45.455 15.66 0.00 38.45 2.83
3071 6974 6.318648 GGGACAAAATATGTAGCTCATGAACA 59.681 38.462 1.34 1.34 44.12 3.18
3091 6994 3.403624 CCCAGTTGGCTAGCAGGA 58.596 61.111 18.24 0.00 0.00 3.86
3092 6995 1.918253 CCCAGTTGGCTAGCAGGAT 59.082 57.895 18.24 0.00 0.00 3.24
3093 6996 0.257039 CCCAGTTGGCTAGCAGGATT 59.743 55.000 18.24 0.00 0.00 3.01
3094 6997 1.341383 CCCAGTTGGCTAGCAGGATTT 60.341 52.381 18.24 0.00 0.00 2.17
3095 6998 2.450476 CCAGTTGGCTAGCAGGATTTT 58.550 47.619 18.24 0.00 0.00 1.82
3096 6999 2.827921 CCAGTTGGCTAGCAGGATTTTT 59.172 45.455 18.24 0.00 0.00 1.94
3132 7035 7.680442 AGAGCACTCTTCTTAAAGGAAATTC 57.320 36.000 0.00 0.00 36.31 2.17
3133 7036 7.227156 AGAGCACTCTTCTTAAAGGAAATTCA 58.773 34.615 0.00 0.00 36.31 2.57
3134 7037 7.721399 AGAGCACTCTTCTTAAAGGAAATTCAA 59.279 33.333 0.00 0.00 36.31 2.69
3135 7038 7.652727 AGCACTCTTCTTAAAGGAAATTCAAC 58.347 34.615 0.00 0.00 33.03 3.18
3136 7039 6.578919 GCACTCTTCTTAAAGGAAATTCAACG 59.421 38.462 0.00 0.00 33.03 4.10
3137 7040 6.578919 CACTCTTCTTAAAGGAAATTCAACGC 59.421 38.462 0.00 0.00 33.03 4.84
3138 7041 6.009115 TCTTCTTAAAGGAAATTCAACGCC 57.991 37.500 0.00 0.00 33.03 5.68
3139 7042 5.533154 TCTTCTTAAAGGAAATTCAACGCCA 59.467 36.000 0.00 0.00 33.03 5.69
3140 7043 5.975693 TCTTAAAGGAAATTCAACGCCAT 57.024 34.783 0.00 0.00 0.00 4.40
3141 7044 5.949735 TCTTAAAGGAAATTCAACGCCATC 58.050 37.500 0.00 0.00 0.00 3.51
3142 7045 5.710099 TCTTAAAGGAAATTCAACGCCATCT 59.290 36.000 0.00 0.00 0.00 2.90
3143 7046 4.440839 AAAGGAAATTCAACGCCATCTC 57.559 40.909 0.00 0.00 0.00 2.75
3144 7047 3.356529 AGGAAATTCAACGCCATCTCT 57.643 42.857 0.00 0.00 0.00 3.10
3145 7048 4.487714 AGGAAATTCAACGCCATCTCTA 57.512 40.909 0.00 0.00 0.00 2.43
3146 7049 4.843728 AGGAAATTCAACGCCATCTCTAA 58.156 39.130 0.00 0.00 0.00 2.10
3147 7050 4.636206 AGGAAATTCAACGCCATCTCTAAC 59.364 41.667 0.00 0.00 0.00 2.34
3148 7051 4.201920 GGAAATTCAACGCCATCTCTAACC 60.202 45.833 0.00 0.00 0.00 2.85
3149 7052 3.627395 ATTCAACGCCATCTCTAACCA 57.373 42.857 0.00 0.00 0.00 3.67
3150 7053 3.410631 TTCAACGCCATCTCTAACCAA 57.589 42.857 0.00 0.00 0.00 3.67
3151 7054 2.695359 TCAACGCCATCTCTAACCAAC 58.305 47.619 0.00 0.00 0.00 3.77
3152 7055 2.037902 TCAACGCCATCTCTAACCAACA 59.962 45.455 0.00 0.00 0.00 3.33
3153 7056 2.094762 ACGCCATCTCTAACCAACAC 57.905 50.000 0.00 0.00 0.00 3.32
3154 7057 1.346395 ACGCCATCTCTAACCAACACA 59.654 47.619 0.00 0.00 0.00 3.72
3155 7058 2.224426 ACGCCATCTCTAACCAACACAA 60.224 45.455 0.00 0.00 0.00 3.33
3156 7059 2.159627 CGCCATCTCTAACCAACACAAC 59.840 50.000 0.00 0.00 0.00 3.32
3157 7060 3.412386 GCCATCTCTAACCAACACAACT 58.588 45.455 0.00 0.00 0.00 3.16
3158 7061 3.437049 GCCATCTCTAACCAACACAACTC 59.563 47.826 0.00 0.00 0.00 3.01
3159 7062 3.679980 CCATCTCTAACCAACACAACTCG 59.320 47.826 0.00 0.00 0.00 4.18
3160 7063 4.556233 CATCTCTAACCAACACAACTCGA 58.444 43.478 0.00 0.00 0.00 4.04
3161 7064 4.866508 TCTCTAACCAACACAACTCGAT 57.133 40.909 0.00 0.00 0.00 3.59
3162 7065 4.556233 TCTCTAACCAACACAACTCGATG 58.444 43.478 0.00 0.00 0.00 3.84
3163 7066 4.279922 TCTCTAACCAACACAACTCGATGA 59.720 41.667 0.00 0.00 0.00 2.92
3164 7067 4.304110 TCTAACCAACACAACTCGATGAC 58.696 43.478 0.00 0.00 0.00 3.06
3165 7068 1.878953 ACCAACACAACTCGATGACC 58.121 50.000 0.00 0.00 0.00 4.02
3166 7069 1.156736 CCAACACAACTCGATGACCC 58.843 55.000 0.00 0.00 0.00 4.46
3167 7070 1.156736 CAACACAACTCGATGACCCC 58.843 55.000 0.00 0.00 0.00 4.95
3168 7071 0.320421 AACACAACTCGATGACCCCG 60.320 55.000 0.00 0.00 0.00 5.73
3169 7072 2.100631 CACAACTCGATGACCCCGC 61.101 63.158 0.00 0.00 0.00 6.13
3170 7073 2.264480 CAACTCGATGACCCCGCA 59.736 61.111 0.00 0.00 0.00 5.69
3171 7074 1.153369 CAACTCGATGACCCCGCAT 60.153 57.895 0.00 0.00 0.00 4.73
3172 7075 0.104120 CAACTCGATGACCCCGCATA 59.896 55.000 0.00 0.00 0.00 3.14
3173 7076 1.048601 AACTCGATGACCCCGCATAT 58.951 50.000 0.00 0.00 0.00 1.78
3174 7077 1.919240 ACTCGATGACCCCGCATATA 58.081 50.000 0.00 0.00 0.00 0.86
3175 7078 1.544691 ACTCGATGACCCCGCATATAC 59.455 52.381 0.00 0.00 0.00 1.47
3176 7079 1.819288 CTCGATGACCCCGCATATACT 59.181 52.381 0.00 0.00 0.00 2.12
3177 7080 2.231478 CTCGATGACCCCGCATATACTT 59.769 50.000 0.00 0.00 0.00 2.24
3178 7081 2.230508 TCGATGACCCCGCATATACTTC 59.769 50.000 0.00 0.00 0.00 3.01
3179 7082 2.029380 CGATGACCCCGCATATACTTCA 60.029 50.000 0.00 0.00 0.00 3.02
3180 7083 3.368427 CGATGACCCCGCATATACTTCAT 60.368 47.826 0.00 0.00 0.00 2.57
3181 7084 4.142249 CGATGACCCCGCATATACTTCATA 60.142 45.833 0.00 0.00 0.00 2.15
3182 7085 5.451937 CGATGACCCCGCATATACTTCATAT 60.452 44.000 0.00 0.00 0.00 1.78
3183 7086 5.339008 TGACCCCGCATATACTTCATATC 57.661 43.478 0.00 0.00 0.00 1.63
3184 7087 4.142249 TGACCCCGCATATACTTCATATCG 60.142 45.833 0.00 0.00 0.00 2.92
3185 7088 3.123804 CCCCGCATATACTTCATATCGC 58.876 50.000 0.00 0.00 0.00 4.58
3186 7089 2.789339 CCCGCATATACTTCATATCGCG 59.211 50.000 0.00 0.00 41.55 5.87
3188 7091 3.691498 CGCATATACTTCATATCGCGGA 58.309 45.455 6.13 0.00 40.07 5.54
3189 7092 4.102649 CGCATATACTTCATATCGCGGAA 58.897 43.478 6.13 0.02 40.07 4.30
3190 7093 4.027621 CGCATATACTTCATATCGCGGAAC 60.028 45.833 6.13 0.00 40.07 3.62
3191 7094 4.862574 GCATATACTTCATATCGCGGAACA 59.137 41.667 6.13 0.00 0.00 3.18
3192 7095 5.347635 GCATATACTTCATATCGCGGAACAA 59.652 40.000 6.13 0.00 0.00 2.83
3193 7096 6.128661 GCATATACTTCATATCGCGGAACAAA 60.129 38.462 6.13 0.00 0.00 2.83
3194 7097 7.413000 GCATATACTTCATATCGCGGAACAAAT 60.413 37.037 6.13 0.00 0.00 2.32
3195 7098 9.083080 CATATACTTCATATCGCGGAACAAATA 57.917 33.333 6.13 0.00 0.00 1.40
3196 7099 5.907197 ACTTCATATCGCGGAACAAATAG 57.093 39.130 6.13 0.00 0.00 1.73
3197 7100 4.211374 ACTTCATATCGCGGAACAAATAGC 59.789 41.667 6.13 0.00 0.00 2.97
3198 7101 3.064207 TCATATCGCGGAACAAATAGCC 58.936 45.455 6.13 0.00 0.00 3.93
3199 7102 2.605837 TATCGCGGAACAAATAGCCA 57.394 45.000 6.13 0.00 0.00 4.75
3200 7103 1.967319 ATCGCGGAACAAATAGCCAT 58.033 45.000 6.13 0.00 0.00 4.40
3201 7104 1.745232 TCGCGGAACAAATAGCCATT 58.255 45.000 6.13 0.00 0.00 3.16
3202 7105 1.668751 TCGCGGAACAAATAGCCATTC 59.331 47.619 6.13 0.00 0.00 2.67
3203 7106 1.268539 CGCGGAACAAATAGCCATTCC 60.269 52.381 0.00 0.00 37.79 3.01
3204 7107 1.748493 GCGGAACAAATAGCCATTCCA 59.252 47.619 3.01 0.00 40.63 3.53
3205 7108 2.479560 GCGGAACAAATAGCCATTCCAC 60.480 50.000 3.01 0.00 40.63 4.02
3206 7109 3.016736 CGGAACAAATAGCCATTCCACT 58.983 45.455 3.01 0.00 40.63 4.00
3207 7110 3.443681 CGGAACAAATAGCCATTCCACTT 59.556 43.478 3.01 0.00 40.63 3.16
3208 7111 4.675146 CGGAACAAATAGCCATTCCACTTG 60.675 45.833 3.01 0.00 40.63 3.16
3209 7112 3.874392 ACAAATAGCCATTCCACTTGC 57.126 42.857 0.00 0.00 0.00 4.01
3210 7113 3.164268 ACAAATAGCCATTCCACTTGCA 58.836 40.909 0.00 0.00 0.00 4.08
3211 7114 3.194116 ACAAATAGCCATTCCACTTGCAG 59.806 43.478 0.00 0.00 0.00 4.41
3212 7115 3.370840 AATAGCCATTCCACTTGCAGA 57.629 42.857 0.00 0.00 0.00 4.26
3213 7116 3.589951 ATAGCCATTCCACTTGCAGAT 57.410 42.857 0.00 0.00 0.00 2.90
3214 7117 4.712051 ATAGCCATTCCACTTGCAGATA 57.288 40.909 0.00 0.00 0.00 1.98
3215 7118 2.928334 AGCCATTCCACTTGCAGATAG 58.072 47.619 0.00 0.00 0.00 2.08
3216 7119 1.952296 GCCATTCCACTTGCAGATAGG 59.048 52.381 0.00 0.00 0.00 2.57
3217 7120 2.421952 GCCATTCCACTTGCAGATAGGA 60.422 50.000 0.00 0.00 0.00 2.94
3218 7121 3.889815 CCATTCCACTTGCAGATAGGAA 58.110 45.455 12.40 12.40 42.05 3.36
3227 7130 5.201713 CTTGCAGATAGGAAGTAATCGGA 57.798 43.478 0.00 0.00 40.45 4.55
3228 7131 4.585955 TGCAGATAGGAAGTAATCGGAC 57.414 45.455 0.00 0.00 0.00 4.79
3229 7132 3.004419 TGCAGATAGGAAGTAATCGGACG 59.996 47.826 0.00 0.00 0.00 4.79
3230 7133 3.004524 GCAGATAGGAAGTAATCGGACGT 59.995 47.826 0.00 0.00 0.00 4.34
3231 7134 4.499357 GCAGATAGGAAGTAATCGGACGTT 60.499 45.833 0.00 0.00 0.00 3.99
3232 7135 4.976731 CAGATAGGAAGTAATCGGACGTTG 59.023 45.833 0.00 0.00 0.00 4.10
3233 7136 2.005971 AGGAAGTAATCGGACGTTGC 57.994 50.000 0.00 0.00 0.00 4.17
3234 7137 1.004595 GGAAGTAATCGGACGTTGCC 58.995 55.000 0.00 0.00 0.00 4.52
3235 7138 1.673626 GGAAGTAATCGGACGTTGCCA 60.674 52.381 0.00 0.00 0.00 4.92
3236 7139 1.659098 GAAGTAATCGGACGTTGCCAG 59.341 52.381 0.00 0.00 0.00 4.85
3237 7140 0.108329 AGTAATCGGACGTTGCCAGG 60.108 55.000 0.00 0.00 0.00 4.45
3238 7141 0.108520 GTAATCGGACGTTGCCAGGA 60.109 55.000 0.00 0.00 0.00 3.86
3239 7142 0.174845 TAATCGGACGTTGCCAGGAG 59.825 55.000 0.00 0.00 0.00 3.69
3240 7143 2.521958 AATCGGACGTTGCCAGGAGG 62.522 60.000 0.00 0.00 38.23 4.30
3241 7144 4.003788 CGGACGTTGCCAGGAGGT 62.004 66.667 0.00 0.00 37.19 3.85
3242 7145 2.358737 GGACGTTGCCAGGAGGTG 60.359 66.667 0.00 0.00 37.19 4.00
3243 7146 3.050275 GACGTTGCCAGGAGGTGC 61.050 66.667 0.00 0.00 37.19 5.01
3244 7147 4.643387 ACGTTGCCAGGAGGTGCC 62.643 66.667 0.00 0.00 37.19 5.01
3245 7148 4.641645 CGTTGCCAGGAGGTGCCA 62.642 66.667 0.00 0.00 40.02 4.92
3246 7149 2.203480 GTTGCCAGGAGGTGCCAA 60.203 61.111 0.00 0.00 40.02 4.52
3247 7150 2.203480 TTGCCAGGAGGTGCCAAC 60.203 61.111 0.00 0.00 40.02 3.77
3248 7151 4.641645 TGCCAGGAGGTGCCAACG 62.642 66.667 0.00 0.00 40.02 4.10
3249 7152 4.329545 GCCAGGAGGTGCCAACGA 62.330 66.667 0.00 0.00 40.02 3.85
3250 7153 2.358737 CCAGGAGGTGCCAACGAC 60.359 66.667 0.00 0.00 40.02 4.34
3251 7154 2.738521 CAGGAGGTGCCAACGACG 60.739 66.667 0.00 0.00 40.02 5.12
3252 7155 2.915659 AGGAGGTGCCAACGACGA 60.916 61.111 0.00 0.00 40.02 4.20
3253 7156 2.029964 GGAGGTGCCAACGACGAA 59.970 61.111 0.00 0.00 36.34 3.85
3254 7157 1.375523 GGAGGTGCCAACGACGAAT 60.376 57.895 0.00 0.00 36.34 3.34
3255 7158 0.108520 GGAGGTGCCAACGACGAATA 60.109 55.000 0.00 0.00 36.34 1.75
3256 7159 1.472728 GGAGGTGCCAACGACGAATAT 60.473 52.381 0.00 0.00 36.34 1.28
3257 7160 2.223876 GGAGGTGCCAACGACGAATATA 60.224 50.000 0.00 0.00 36.34 0.86
3258 7161 2.793232 GAGGTGCCAACGACGAATATAC 59.207 50.000 0.00 0.00 0.00 1.47
3259 7162 2.166870 AGGTGCCAACGACGAATATACA 59.833 45.455 0.00 0.00 0.00 2.29
3260 7163 2.931325 GGTGCCAACGACGAATATACAA 59.069 45.455 0.00 0.00 0.00 2.41
3261 7164 3.371591 GGTGCCAACGACGAATATACAAA 59.628 43.478 0.00 0.00 0.00 2.83
3262 7165 4.493545 GGTGCCAACGACGAATATACAAAG 60.494 45.833 0.00 0.00 0.00 2.77
3263 7166 3.062909 TGCCAACGACGAATATACAAAGC 59.937 43.478 0.00 0.00 0.00 3.51
3264 7167 3.062909 GCCAACGACGAATATACAAAGCA 59.937 43.478 0.00 0.00 0.00 3.91
3265 7168 4.260620 GCCAACGACGAATATACAAAGCAT 60.261 41.667 0.00 0.00 0.00 3.79
3266 7169 5.197549 CCAACGACGAATATACAAAGCATG 58.802 41.667 0.00 0.00 0.00 4.06
3267 7170 5.197549 CAACGACGAATATACAAAGCATGG 58.802 41.667 0.00 0.00 0.00 3.66
3268 7171 4.689071 ACGACGAATATACAAAGCATGGA 58.311 39.130 0.00 0.00 0.00 3.41
3269 7172 4.506654 ACGACGAATATACAAAGCATGGAC 59.493 41.667 0.00 0.00 0.00 4.02
3270 7173 4.084537 CGACGAATATACAAAGCATGGACC 60.085 45.833 0.00 0.00 0.00 4.46
3271 7174 4.776349 ACGAATATACAAAGCATGGACCA 58.224 39.130 0.00 0.00 0.00 4.02
3272 7175 5.376625 ACGAATATACAAAGCATGGACCAT 58.623 37.500 0.00 0.00 0.00 3.55
3273 7176 5.470098 ACGAATATACAAAGCATGGACCATC 59.530 40.000 3.21 0.00 0.00 3.51
3274 7177 5.106555 CGAATATACAAAGCATGGACCATCC 60.107 44.000 3.21 0.00 36.96 3.51
3284 7187 2.335681 TGGACCATCCACCTAGACAA 57.664 50.000 0.00 0.00 42.67 3.18
3285 7188 2.187958 TGGACCATCCACCTAGACAAG 58.812 52.381 0.00 0.00 42.67 3.16
3286 7189 3.158770 TGGACCATCCACCTAGACAAGG 61.159 54.545 0.00 0.00 42.67 3.61
3296 7199 3.771577 CCTAGACAAGGTCAAGGTTGT 57.228 47.619 0.00 0.00 40.94 3.32
3297 7200 4.884668 CCTAGACAAGGTCAAGGTTGTA 57.115 45.455 0.00 0.00 40.94 2.41
3298 7201 4.566987 CCTAGACAAGGTCAAGGTTGTAC 58.433 47.826 0.00 0.00 40.94 2.90
3299 7202 4.283722 CCTAGACAAGGTCAAGGTTGTACT 59.716 45.833 0.00 0.00 40.94 2.73
3300 7203 5.479375 CCTAGACAAGGTCAAGGTTGTACTA 59.521 44.000 0.00 0.00 40.94 1.82
3301 7204 5.211174 AGACAAGGTCAAGGTTGTACTAC 57.789 43.478 0.00 0.00 37.02 2.73
3302 7205 4.900054 AGACAAGGTCAAGGTTGTACTACT 59.100 41.667 7.38 0.00 37.02 2.57
3303 7206 6.073314 AGACAAGGTCAAGGTTGTACTACTA 58.927 40.000 7.38 0.00 37.02 1.82
3304 7207 6.208994 AGACAAGGTCAAGGTTGTACTACTAG 59.791 42.308 7.38 0.00 37.02 2.57
3305 7208 5.245526 ACAAGGTCAAGGTTGTACTACTAGG 59.754 44.000 7.38 0.00 35.10 3.02
3306 7209 5.266709 AGGTCAAGGTTGTACTACTAGGA 57.733 43.478 7.38 0.46 0.00 2.94
3307 7210 5.840081 AGGTCAAGGTTGTACTACTAGGAT 58.160 41.667 7.38 0.00 0.00 3.24
3308 7211 6.978261 AGGTCAAGGTTGTACTACTAGGATA 58.022 40.000 7.38 0.00 0.00 2.59
3309 7212 6.832900 AGGTCAAGGTTGTACTACTAGGATAC 59.167 42.308 7.38 0.00 0.00 2.24
3326 7229 4.749976 GGATACTCAACTCCAAGTCTCAC 58.250 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.586001 ACCACAGATCTCAAAGCAACATTT 59.414 37.500 0.00 0.00 0.00 2.32
40 41 9.084164 CCATGTAGTAGTGAGTTAATTGTGTAC 57.916 37.037 0.00 0.00 0.00 2.90
52 53 9.442047 AAAGAGAAAATTCCATGTAGTAGTGAG 57.558 33.333 0.00 0.00 0.00 3.51
93 104 6.326375 TGCAAAGTTCAAAACTCGTATGTTT 58.674 32.000 0.00 0.00 41.91 2.83
104 115 4.527509 TGTTGTCCTGCAAAGTTCAAAA 57.472 36.364 0.00 0.00 39.03 2.44
107 118 4.241681 GTTTTGTTGTCCTGCAAAGTTCA 58.758 39.130 0.00 0.00 39.03 3.18
108 119 4.241681 TGTTTTGTTGTCCTGCAAAGTTC 58.758 39.130 0.00 0.00 39.03 3.01
134 145 9.492973 TGAAAGTTTTTACCCACATAGTAGTAC 57.507 33.333 0.00 0.00 0.00 2.73
169 180 5.987347 ACTTTGGGTATATTTATGTCGGACG 59.013 40.000 3.34 0.00 0.00 4.79
187 198 5.816919 AGTTCGTATGTTTTGTCACTTTGG 58.183 37.500 0.00 0.00 0.00 3.28
188 199 6.964370 TGAAGTTCGTATGTTTTGTCACTTTG 59.036 34.615 0.00 0.00 0.00 2.77
189 200 7.079182 TGAAGTTCGTATGTTTTGTCACTTT 57.921 32.000 0.00 0.00 0.00 2.66
190 201 6.671614 TGAAGTTCGTATGTTTTGTCACTT 57.328 33.333 0.00 0.00 0.00 3.16
191 202 6.671614 TTGAAGTTCGTATGTTTTGTCACT 57.328 33.333 0.00 0.00 0.00 3.41
192 203 7.321271 CAGATTGAAGTTCGTATGTTTTGTCAC 59.679 37.037 0.00 0.00 0.00 3.67
193 204 7.011950 ACAGATTGAAGTTCGTATGTTTTGTCA 59.988 33.333 0.00 0.00 0.00 3.58
194 205 7.352739 ACAGATTGAAGTTCGTATGTTTTGTC 58.647 34.615 0.00 0.00 0.00 3.18
251 262 4.160252 ACTTGAAACTTTGCAGGACAACAT 59.840 37.500 0.00 0.00 38.23 2.71
314 325 3.123453 TCATCAAGATTCGTGCAAGAACG 59.877 43.478 17.44 2.28 44.92 3.95
324 335 6.436261 CCATCCATTTCTTCATCAAGATTCG 58.564 40.000 0.00 0.00 38.50 3.34
375 386 4.035909 TCCGGTTAACTTTTGAGAAAGCAC 59.964 41.667 0.00 0.00 44.92 4.40
388 399 0.323999 GCCCCCATTTCCGGTTAACT 60.324 55.000 0.00 0.00 0.00 2.24
417 428 6.944862 GCTATTTAAGATGGATGACAAGGGAT 59.055 38.462 0.00 0.00 0.00 3.85
463 474 0.027194 CATGTCGCCTCTTCGCATTG 59.973 55.000 0.00 0.00 0.00 2.82
464 475 0.108186 TCATGTCGCCTCTTCGCATT 60.108 50.000 0.00 0.00 0.00 3.56
469 480 0.302890 CGCATTCATGTCGCCTCTTC 59.697 55.000 0.00 0.00 0.00 2.87
532 544 2.121948 ACTGAAGGATAGGCTCATGCA 58.878 47.619 0.00 0.00 41.91 3.96
553 565 1.075979 CGACATGTTCGCCACATCGA 61.076 55.000 0.00 0.00 43.17 3.59
572 584 1.272769 GGGCAGACATAGGATCGTACC 59.727 57.143 0.00 0.00 0.00 3.34
574 586 1.133294 TGGGGCAGACATAGGATCGTA 60.133 52.381 0.00 0.00 0.00 3.43
577 589 1.701847 ACATGGGGCAGACATAGGATC 59.298 52.381 0.00 0.00 0.00 3.36
585 597 2.042831 GCTCACACATGGGGCAGAC 61.043 63.158 0.00 0.00 0.00 3.51
589 601 1.767759 ATTAAGCTCACACATGGGGC 58.232 50.000 0.00 0.00 0.00 5.80
597 609 3.071602 GCCCCTCTCATATTAAGCTCACA 59.928 47.826 0.00 0.00 0.00 3.58
598 610 3.558109 GGCCCCTCTCATATTAAGCTCAC 60.558 52.174 0.00 0.00 0.00 3.51
634 646 3.102052 ACGTCACAAATACGACCAAGT 57.898 42.857 2.27 0.00 42.90 3.16
643 655 4.154015 CCTGCATCAAGAACGTCACAAATA 59.846 41.667 0.00 0.00 0.00 1.40
656 668 2.180017 GCCAACGCCTGCATCAAG 59.820 61.111 0.00 0.00 0.00 3.02
659 671 3.818787 CCAGCCAACGCCTGCATC 61.819 66.667 0.00 0.00 34.57 3.91
695 707 5.390387 ACAACCTGACCTTATTTTTGCCTA 58.610 37.500 0.00 0.00 0.00 3.93
704 716 5.700402 AAGCATCTACAACCTGACCTTAT 57.300 39.130 0.00 0.00 0.00 1.73
726 738 4.319911 GCGCATATAATTGCCCGACTTTAA 60.320 41.667 0.30 0.00 39.52 1.52
824 4168 3.897505 TCTAGCTAGCTGATAATGTGGCA 59.102 43.478 27.68 1.11 0.00 4.92
875 4225 0.808755 TGAACGATGAGTCTGCGCTA 59.191 50.000 9.73 0.00 0.00 4.26
876 4226 0.174389 ATGAACGATGAGTCTGCGCT 59.826 50.000 9.73 0.00 0.00 5.92
877 4227 0.299895 CATGAACGATGAGTCTGCGC 59.700 55.000 0.00 0.00 33.31 6.09
878 4228 0.299895 GCATGAACGATGAGTCTGCG 59.700 55.000 0.00 4.11 33.31 5.18
897 4247 2.125912 CTTCACGACGGAGCCAGG 60.126 66.667 0.00 0.00 0.00 4.45
920 4270 3.202706 GCCGGGATTCTCGTTGGC 61.203 66.667 2.18 0.00 35.04 4.52
921 4271 2.106683 GTGCCGGGATTCTCGTTGG 61.107 63.158 2.18 0.00 0.00 3.77
1005 4358 3.569210 TGGACCTGTGGGCTGTGG 61.569 66.667 0.00 0.00 35.63 4.17
1006 4359 2.281761 GTGGACCTGTGGGCTGTG 60.282 66.667 0.00 0.00 35.63 3.66
1007 4360 2.772191 TGTGGACCTGTGGGCTGT 60.772 61.111 0.00 0.00 35.63 4.40
1008 4361 2.033141 CTGTGGACCTGTGGGCTG 59.967 66.667 0.00 0.00 35.63 4.85
1009 4362 3.958860 GCTGTGGACCTGTGGGCT 61.959 66.667 0.00 0.00 35.63 5.19
1010 4363 4.269523 TGCTGTGGACCTGTGGGC 62.270 66.667 0.00 0.00 35.63 5.36
1011 4364 2.281761 GTGCTGTGGACCTGTGGG 60.282 66.667 0.00 0.00 38.88 4.61
1153 4527 2.363925 GTAGAGGGAGGTGGCCGT 60.364 66.667 0.00 0.00 0.00 5.68
1171 4545 2.511600 CGACTTGACGGGGATGGC 60.512 66.667 0.00 0.00 0.00 4.40
1252 4632 1.073216 CACTCGAGCGTGTCATGGAC 61.073 60.000 13.61 0.00 0.00 4.02
1253 4633 1.212751 CACTCGAGCGTGTCATGGA 59.787 57.895 13.61 0.00 0.00 3.41
1353 4733 2.912025 CACTTGCAGCGGGGGTTT 60.912 61.111 0.00 0.00 0.00 3.27
1407 4790 2.746375 GGTCATGTCCCCCGATGCT 61.746 63.158 0.00 0.00 0.00 3.79
1428 4811 1.216710 GTTGGCTGAGAGCGCTACT 59.783 57.895 11.50 9.80 43.62 2.57
1566 4958 2.586357 GGGAATGCGAGGCTCGAC 60.586 66.667 38.56 27.98 43.74 4.20
1608 5000 4.454554 GCGAACGAGTTAGCGACT 57.545 55.556 5.40 0.00 42.70 4.18
1728 5141 1.677552 CTTGTACTTGCGGAGGGGT 59.322 57.895 0.00 0.00 0.00 4.95
1851 5270 2.361610 TGTAGGGGGTCGTCCGTC 60.362 66.667 0.00 0.00 36.01 4.79
1852 5271 2.677875 GTGTAGGGGGTCGTCCGT 60.678 66.667 0.00 0.00 36.01 4.69
1853 5272 3.818787 CGTGTAGGGGGTCGTCCG 61.819 72.222 0.00 0.00 36.01 4.79
1854 5273 3.455469 CCGTGTAGGGGGTCGTCC 61.455 72.222 0.00 0.00 35.97 4.79
1855 5274 2.361610 TCCGTGTAGGGGGTCGTC 60.362 66.667 0.00 0.00 41.52 4.20
1856 5275 2.362120 CTCCGTGTAGGGGGTCGT 60.362 66.667 0.00 0.00 41.52 4.34
1857 5276 3.834799 GCTCCGTGTAGGGGGTCG 61.835 72.222 0.00 0.00 42.26 4.79
1877 5296 2.355363 GCGGTACACGTCACTGCA 60.355 61.111 20.55 0.00 45.70 4.41
2120 5560 1.078759 ATCTCGACGAAAGCCAAGCG 61.079 55.000 0.00 0.00 0.00 4.68
2146 5586 0.034477 AATACCCAGCCTTGTTCCCG 60.034 55.000 0.00 0.00 0.00 5.14
2206 5646 0.381089 GCAGCATGTTCTCCATCTGC 59.619 55.000 0.00 0.00 42.22 4.26
2337 5791 9.650371 CACAATGACAATATTAATTAGACCACG 57.350 33.333 0.00 0.00 0.00 4.94
2345 5799 9.100554 CCATGCAACACAATGACAATATTAATT 57.899 29.630 0.00 0.00 0.00 1.40
2346 5800 8.476447 TCCATGCAACACAATGACAATATTAAT 58.524 29.630 0.00 0.00 0.00 1.40
2347 5801 7.834803 TCCATGCAACACAATGACAATATTAA 58.165 30.769 0.00 0.00 0.00 1.40
2348 5802 7.401955 TCCATGCAACACAATGACAATATTA 57.598 32.000 0.00 0.00 0.00 0.98
2349 5803 6.283544 TCCATGCAACACAATGACAATATT 57.716 33.333 0.00 0.00 0.00 1.28
2350 5804 5.918426 TCCATGCAACACAATGACAATAT 57.082 34.783 0.00 0.00 0.00 1.28
2351 5805 5.918426 ATCCATGCAACACAATGACAATA 57.082 34.783 0.00 0.00 0.00 1.90
2352 5806 4.811969 ATCCATGCAACACAATGACAAT 57.188 36.364 0.00 0.00 0.00 2.71
2353 5807 4.603989 AATCCATGCAACACAATGACAA 57.396 36.364 0.00 0.00 0.00 3.18
2368 5822 4.173256 GCACGGAAATTTTCGAAATCCAT 58.827 39.130 25.30 10.00 0.00 3.41
2378 5832 5.151389 GTCAAATAGACGCACGGAAATTTT 58.849 37.500 0.00 0.00 37.53 1.82
2379 5833 4.719040 GTCAAATAGACGCACGGAAATTT 58.281 39.130 0.00 0.00 37.53 1.82
2437 5891 0.755686 TTTTGGTGCATGGGGTTGAC 59.244 50.000 0.00 0.00 0.00 3.18
2470 5924 0.803768 CAGATCTCGACGTGCTTGGG 60.804 60.000 0.00 0.00 0.00 4.12
2491 5945 4.621068 TTTTGTGTGAGCTTCTGACTTG 57.379 40.909 0.00 0.00 0.00 3.16
2503 5957 7.499321 AGTACAACGGAATAATTTTGTGTGA 57.501 32.000 0.00 0.00 34.15 3.58
2531 5985 6.604735 ACAGGATGCGAAATAGTCAAATAC 57.395 37.500 0.00 0.00 42.53 1.89
2546 6000 3.459232 TGACAGTGCTATACAGGATGC 57.541 47.619 0.00 0.00 42.53 3.91
2599 6468 1.269831 ACACCTTGCGAACACTCTCTC 60.270 52.381 0.00 0.00 0.00 3.20
2686 6587 1.917273 AATCCGTACATTGACGTCGG 58.083 50.000 11.62 7.18 41.31 4.79
2688 6590 6.399204 AAGTTTAATCCGTACATTGACGTC 57.601 37.500 9.11 9.11 41.31 4.34
2750 6652 5.308825 AGTTTCAGGACAACACTTGGATAG 58.691 41.667 0.00 0.00 34.12 2.08
2755 6657 4.963276 TGAAGTTTCAGGACAACACTTG 57.037 40.909 0.00 0.00 32.50 3.16
2772 6674 2.424246 GACGGAGGGAGTAGTCTTGAAG 59.576 54.545 0.00 0.00 0.00 3.02
2783 6685 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2784 6686 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2785 6687 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2786 6688 4.891992 ATCTTACATTATGGGACGGAGG 57.108 45.455 0.00 0.00 0.00 4.30
2787 6689 8.528643 TGTATAATCTTACATTATGGGACGGAG 58.471 37.037 0.00 0.00 0.00 4.63
2788 6690 8.425237 TGTATAATCTTACATTATGGGACGGA 57.575 34.615 0.00 0.00 0.00 4.69
2789 6691 8.311836 ACTGTATAATCTTACATTATGGGACGG 58.688 37.037 0.00 0.00 31.94 4.79
2790 6692 9.706691 AACTGTATAATCTTACATTATGGGACG 57.293 33.333 0.00 0.00 31.94 4.79
2792 6694 9.502091 GCAACTGTATAATCTTACATTATGGGA 57.498 33.333 0.00 0.00 31.94 4.37
2793 6695 8.443160 CGCAACTGTATAATCTTACATTATGGG 58.557 37.037 0.00 0.00 31.94 4.00
2794 6696 8.988934 ACGCAACTGTATAATCTTACATTATGG 58.011 33.333 0.00 0.00 31.94 2.74
2797 6699 9.687210 CCTACGCAACTGTATAATCTTACATTA 57.313 33.333 0.00 0.00 31.94 1.90
2798 6700 7.656137 CCCTACGCAACTGTATAATCTTACATT 59.344 37.037 0.00 0.00 31.94 2.71
2799 6701 7.152645 CCCTACGCAACTGTATAATCTTACAT 58.847 38.462 0.00 0.00 31.94 2.29
2800 6702 6.097270 ACCCTACGCAACTGTATAATCTTACA 59.903 38.462 0.00 0.00 0.00 2.41
2801 6703 6.510536 ACCCTACGCAACTGTATAATCTTAC 58.489 40.000 0.00 0.00 0.00 2.34
2802 6704 6.720112 ACCCTACGCAACTGTATAATCTTA 57.280 37.500 0.00 0.00 0.00 2.10
2803 6705 5.609533 ACCCTACGCAACTGTATAATCTT 57.390 39.130 0.00 0.00 0.00 2.40
2804 6706 5.598769 GAACCCTACGCAACTGTATAATCT 58.401 41.667 0.00 0.00 0.00 2.40
2805 6707 4.443394 CGAACCCTACGCAACTGTATAATC 59.557 45.833 0.00 0.00 0.00 1.75
2806 6708 4.098349 TCGAACCCTACGCAACTGTATAAT 59.902 41.667 0.00 0.00 0.00 1.28
2818 6720 3.505464 AAGAACATCTCGAACCCTACG 57.495 47.619 0.00 0.00 0.00 3.51
2819 6721 3.858238 CGAAAGAACATCTCGAACCCTAC 59.142 47.826 0.00 0.00 34.52 3.18
2847 6749 0.675083 CATGTTTTGGAGCCACAGCA 59.325 50.000 0.00 0.00 43.56 4.41
2858 6760 5.241506 TCTCCTAAGAGCAAACCATGTTTTG 59.758 40.000 11.10 11.10 40.22 2.44
2859 6761 5.385198 TCTCCTAAGAGCAAACCATGTTTT 58.615 37.500 0.00 0.00 40.22 2.43
2867 6769 5.067023 CCCATGAATTCTCCTAAGAGCAAAC 59.933 44.000 7.05 0.00 40.22 2.93
2885 6787 4.032960 ACAACTCTATTGCAACCCATGA 57.967 40.909 0.00 0.00 0.00 3.07
2937 6839 7.966246 TGGTGATCCTTCATTTTTCAAAATG 57.034 32.000 15.96 15.96 43.52 2.32
2961 6863 4.660789 AATCGTTGTAGCTATACCCGTT 57.339 40.909 0.00 0.00 31.12 4.44
2974 6876 7.383843 GGAATAACAACCATGAAAAATCGTTGT 59.616 33.333 8.12 8.12 46.62 3.32
3019 6921 5.364778 TGGCATGCTCATACTTATAACGTT 58.635 37.500 18.92 5.88 0.00 3.99
3021 6923 6.486253 AATGGCATGCTCATACTTATAACG 57.514 37.500 18.92 0.00 0.00 3.18
3024 6926 6.443527 TCCCTAATGGCATGCTCATACTTATA 59.556 38.462 18.92 7.33 0.00 0.98
3025 6927 5.251468 TCCCTAATGGCATGCTCATACTTAT 59.749 40.000 18.92 6.59 0.00 1.73
3035 6937 3.825143 ATTTTGTCCCTAATGGCATGC 57.175 42.857 9.90 9.90 0.00 4.06
3053 6955 4.823989 GGGCTTGTTCATGAGCTACATATT 59.176 41.667 11.09 0.00 38.89 1.28
3108 7011 7.227156 TGAATTTCCTTTAAGAAGAGTGCTCT 58.773 34.615 0.00 0.00 42.75 4.09
3109 7012 7.440523 TGAATTTCCTTTAAGAAGAGTGCTC 57.559 36.000 0.00 0.00 34.71 4.26
3110 7013 7.520614 CGTTGAATTTCCTTTAAGAAGAGTGCT 60.521 37.037 0.00 0.00 34.71 4.40
3111 7014 6.578919 CGTTGAATTTCCTTTAAGAAGAGTGC 59.421 38.462 0.00 0.00 34.71 4.40
3112 7015 6.578919 GCGTTGAATTTCCTTTAAGAAGAGTG 59.421 38.462 0.00 0.00 34.71 3.51
3113 7016 6.294010 GGCGTTGAATTTCCTTTAAGAAGAGT 60.294 38.462 0.00 0.00 34.71 3.24
3114 7017 6.086871 GGCGTTGAATTTCCTTTAAGAAGAG 58.913 40.000 0.00 0.00 34.71 2.85
3115 7018 5.533154 TGGCGTTGAATTTCCTTTAAGAAGA 59.467 36.000 0.00 0.00 34.71 2.87
3116 7019 5.768317 TGGCGTTGAATTTCCTTTAAGAAG 58.232 37.500 0.00 0.00 0.00 2.85
3117 7020 5.776173 TGGCGTTGAATTTCCTTTAAGAA 57.224 34.783 0.00 0.00 0.00 2.52
3118 7021 5.710099 AGATGGCGTTGAATTTCCTTTAAGA 59.290 36.000 0.00 0.00 0.00 2.10
3119 7022 5.954335 AGATGGCGTTGAATTTCCTTTAAG 58.046 37.500 0.00 0.00 0.00 1.85
3120 7023 5.710099 AGAGATGGCGTTGAATTTCCTTTAA 59.290 36.000 0.00 0.00 0.00 1.52
3121 7024 5.253330 AGAGATGGCGTTGAATTTCCTTTA 58.747 37.500 0.00 0.00 0.00 1.85
3122 7025 4.082125 AGAGATGGCGTTGAATTTCCTTT 58.918 39.130 0.00 0.00 0.00 3.11
3123 7026 3.690460 AGAGATGGCGTTGAATTTCCTT 58.310 40.909 0.00 0.00 0.00 3.36
3124 7027 3.356529 AGAGATGGCGTTGAATTTCCT 57.643 42.857 0.00 0.00 0.00 3.36
3125 7028 4.201920 GGTTAGAGATGGCGTTGAATTTCC 60.202 45.833 0.00 0.00 0.00 3.13
3126 7029 4.394920 TGGTTAGAGATGGCGTTGAATTTC 59.605 41.667 0.00 0.00 0.00 2.17
3127 7030 4.331968 TGGTTAGAGATGGCGTTGAATTT 58.668 39.130 0.00 0.00 0.00 1.82
3128 7031 3.950397 TGGTTAGAGATGGCGTTGAATT 58.050 40.909 0.00 0.00 0.00 2.17
3129 7032 3.627395 TGGTTAGAGATGGCGTTGAAT 57.373 42.857 0.00 0.00 0.00 2.57
3130 7033 3.071479 GTTGGTTAGAGATGGCGTTGAA 58.929 45.455 0.00 0.00 0.00 2.69
3131 7034 2.037902 TGTTGGTTAGAGATGGCGTTGA 59.962 45.455 0.00 0.00 0.00 3.18
3132 7035 2.159627 GTGTTGGTTAGAGATGGCGTTG 59.840 50.000 0.00 0.00 0.00 4.10
3133 7036 2.224426 TGTGTTGGTTAGAGATGGCGTT 60.224 45.455 0.00 0.00 0.00 4.84
3134 7037 1.346395 TGTGTTGGTTAGAGATGGCGT 59.654 47.619 0.00 0.00 0.00 5.68
3135 7038 2.093306 TGTGTTGGTTAGAGATGGCG 57.907 50.000 0.00 0.00 0.00 5.69
3136 7039 3.412386 AGTTGTGTTGGTTAGAGATGGC 58.588 45.455 0.00 0.00 0.00 4.40
3137 7040 3.679980 CGAGTTGTGTTGGTTAGAGATGG 59.320 47.826 0.00 0.00 0.00 3.51
3138 7041 4.556233 TCGAGTTGTGTTGGTTAGAGATG 58.444 43.478 0.00 0.00 0.00 2.90
3139 7042 4.866508 TCGAGTTGTGTTGGTTAGAGAT 57.133 40.909 0.00 0.00 0.00 2.75
3140 7043 4.279922 TCATCGAGTTGTGTTGGTTAGAGA 59.720 41.667 0.00 0.00 0.00 3.10
3141 7044 4.386049 GTCATCGAGTTGTGTTGGTTAGAG 59.614 45.833 0.00 0.00 0.00 2.43
3142 7045 4.304110 GTCATCGAGTTGTGTTGGTTAGA 58.696 43.478 0.00 0.00 0.00 2.10
3143 7046 3.432252 GGTCATCGAGTTGTGTTGGTTAG 59.568 47.826 0.00 0.00 0.00 2.34
3144 7047 3.395639 GGTCATCGAGTTGTGTTGGTTA 58.604 45.455 0.00 0.00 0.00 2.85
3145 7048 2.218603 GGTCATCGAGTTGTGTTGGTT 58.781 47.619 0.00 0.00 0.00 3.67
3146 7049 1.542547 GGGTCATCGAGTTGTGTTGGT 60.543 52.381 0.00 0.00 0.00 3.67
3147 7050 1.156736 GGGTCATCGAGTTGTGTTGG 58.843 55.000 0.00 0.00 0.00 3.77
3148 7051 1.156736 GGGGTCATCGAGTTGTGTTG 58.843 55.000 0.00 0.00 0.00 3.33
3149 7052 0.320421 CGGGGTCATCGAGTTGTGTT 60.320 55.000 0.00 0.00 0.00 3.32
3150 7053 1.292223 CGGGGTCATCGAGTTGTGT 59.708 57.895 0.00 0.00 0.00 3.72
3151 7054 2.100631 GCGGGGTCATCGAGTTGTG 61.101 63.158 0.00 0.00 0.00 3.33
3152 7055 1.899437 ATGCGGGGTCATCGAGTTGT 61.899 55.000 0.00 0.00 0.00 3.32
3153 7056 0.104120 TATGCGGGGTCATCGAGTTG 59.896 55.000 0.00 0.00 0.00 3.16
3154 7057 1.048601 ATATGCGGGGTCATCGAGTT 58.951 50.000 0.00 0.00 0.00 3.01
3155 7058 1.544691 GTATATGCGGGGTCATCGAGT 59.455 52.381 0.00 0.00 0.00 4.18
3156 7059 1.819288 AGTATATGCGGGGTCATCGAG 59.181 52.381 0.00 0.00 0.00 4.04
3157 7060 1.919240 AGTATATGCGGGGTCATCGA 58.081 50.000 0.00 0.00 0.00 3.59
3158 7061 2.029380 TGAAGTATATGCGGGGTCATCG 60.029 50.000 0.00 0.00 0.00 3.84
3159 7062 3.678056 TGAAGTATATGCGGGGTCATC 57.322 47.619 0.00 0.00 0.00 2.92
3160 7063 5.451937 CGATATGAAGTATATGCGGGGTCAT 60.452 44.000 7.22 7.22 32.09 3.06
3161 7064 4.142249 CGATATGAAGTATATGCGGGGTCA 60.142 45.833 0.00 0.00 32.09 4.02
3162 7065 4.360563 CGATATGAAGTATATGCGGGGTC 58.639 47.826 0.00 0.00 32.09 4.46
3163 7066 3.430374 GCGATATGAAGTATATGCGGGGT 60.430 47.826 0.00 0.00 32.09 4.95
3164 7067 3.123804 GCGATATGAAGTATATGCGGGG 58.876 50.000 0.00 0.00 32.09 5.73
3165 7068 2.789339 CGCGATATGAAGTATATGCGGG 59.211 50.000 0.00 0.00 40.93 6.13
3167 7070 3.691498 TCCGCGATATGAAGTATATGCG 58.309 45.455 8.23 0.00 42.37 4.73
3168 7071 4.862574 TGTTCCGCGATATGAAGTATATGC 59.137 41.667 8.23 0.00 32.09 3.14
3169 7072 6.944557 TTGTTCCGCGATATGAAGTATATG 57.055 37.500 8.23 0.00 32.09 1.78
3170 7073 9.302345 CTATTTGTTCCGCGATATGAAGTATAT 57.698 33.333 8.23 0.00 34.65 0.86
3171 7074 7.274904 GCTATTTGTTCCGCGATATGAAGTATA 59.725 37.037 8.23 0.40 0.00 1.47
3172 7075 6.090898 GCTATTTGTTCCGCGATATGAAGTAT 59.909 38.462 8.23 0.00 0.00 2.12
3173 7076 5.404366 GCTATTTGTTCCGCGATATGAAGTA 59.596 40.000 8.23 0.00 0.00 2.24
3174 7077 4.211374 GCTATTTGTTCCGCGATATGAAGT 59.789 41.667 8.23 0.00 0.00 3.01
3175 7078 4.377431 GGCTATTTGTTCCGCGATATGAAG 60.377 45.833 8.23 0.00 0.00 3.02
3176 7079 3.496884 GGCTATTTGTTCCGCGATATGAA 59.503 43.478 8.23 0.00 0.00 2.57
3177 7080 3.064207 GGCTATTTGTTCCGCGATATGA 58.936 45.455 8.23 0.00 0.00 2.15
3178 7081 2.805671 TGGCTATTTGTTCCGCGATATG 59.194 45.455 8.23 0.00 0.00 1.78
3179 7082 3.120321 TGGCTATTTGTTCCGCGATAT 57.880 42.857 8.23 0.00 0.00 1.63
3180 7083 2.605837 TGGCTATTTGTTCCGCGATA 57.394 45.000 8.23 0.00 0.00 2.92
3181 7084 1.967319 ATGGCTATTTGTTCCGCGAT 58.033 45.000 8.23 0.00 0.00 4.58
3182 7085 1.668751 GAATGGCTATTTGTTCCGCGA 59.331 47.619 8.23 0.00 0.00 5.87
3183 7086 1.268539 GGAATGGCTATTTGTTCCGCG 60.269 52.381 0.00 0.00 31.73 6.46
3184 7087 1.748493 TGGAATGGCTATTTGTTCCGC 59.252 47.619 0.00 0.00 42.34 5.54
3185 7088 3.016736 AGTGGAATGGCTATTTGTTCCG 58.983 45.455 0.00 0.00 42.34 4.30
3186 7089 4.747810 CAAGTGGAATGGCTATTTGTTCC 58.252 43.478 0.00 0.00 40.37 3.62
3187 7090 4.176271 GCAAGTGGAATGGCTATTTGTTC 58.824 43.478 0.00 0.00 29.28 3.18
3188 7091 3.577848 TGCAAGTGGAATGGCTATTTGTT 59.422 39.130 0.00 0.00 29.28 2.83
3189 7092 3.164268 TGCAAGTGGAATGGCTATTTGT 58.836 40.909 0.00 0.00 29.28 2.83
3190 7093 3.444742 TCTGCAAGTGGAATGGCTATTTG 59.555 43.478 0.00 0.00 33.76 2.32
3191 7094 3.700538 TCTGCAAGTGGAATGGCTATTT 58.299 40.909 0.00 0.00 33.76 1.40
3192 7095 3.370840 TCTGCAAGTGGAATGGCTATT 57.629 42.857 0.00 0.00 33.76 1.73
3193 7096 3.589951 ATCTGCAAGTGGAATGGCTAT 57.410 42.857 0.00 0.00 33.76 2.97
3194 7097 3.181451 CCTATCTGCAAGTGGAATGGCTA 60.181 47.826 0.00 0.00 33.76 3.93
3195 7098 2.422519 CCTATCTGCAAGTGGAATGGCT 60.423 50.000 0.00 0.00 33.76 4.75
3196 7099 1.952296 CCTATCTGCAAGTGGAATGGC 59.048 52.381 0.00 0.00 33.76 4.40
3197 7100 3.565764 TCCTATCTGCAAGTGGAATGG 57.434 47.619 0.00 0.00 33.76 3.16
3198 7101 4.521146 ACTTCCTATCTGCAAGTGGAATG 58.479 43.478 9.55 7.47 37.87 2.67
3199 7102 4.851639 ACTTCCTATCTGCAAGTGGAAT 57.148 40.909 9.55 1.15 37.87 3.01
3200 7103 5.755409 TTACTTCCTATCTGCAAGTGGAA 57.245 39.130 8.98 8.98 36.89 3.53
3201 7104 5.451937 CGATTACTTCCTATCTGCAAGTGGA 60.452 44.000 0.00 0.00 32.56 4.02
3202 7105 4.747108 CGATTACTTCCTATCTGCAAGTGG 59.253 45.833 0.00 0.00 32.56 4.00
3203 7106 4.747108 CCGATTACTTCCTATCTGCAAGTG 59.253 45.833 0.00 0.00 32.56 3.16
3204 7107 4.649674 TCCGATTACTTCCTATCTGCAAGT 59.350 41.667 0.00 0.00 34.68 3.16
3205 7108 4.985409 GTCCGATTACTTCCTATCTGCAAG 59.015 45.833 0.00 0.00 0.00 4.01
3206 7109 4.499188 CGTCCGATTACTTCCTATCTGCAA 60.499 45.833 0.00 0.00 0.00 4.08
3207 7110 3.004419 CGTCCGATTACTTCCTATCTGCA 59.996 47.826 0.00 0.00 0.00 4.41
3208 7111 3.004524 ACGTCCGATTACTTCCTATCTGC 59.995 47.826 0.00 0.00 0.00 4.26
3209 7112 4.832590 ACGTCCGATTACTTCCTATCTG 57.167 45.455 0.00 0.00 0.00 2.90
3210 7113 4.499357 GCAACGTCCGATTACTTCCTATCT 60.499 45.833 0.00 0.00 0.00 1.98
3211 7114 3.734735 GCAACGTCCGATTACTTCCTATC 59.265 47.826 0.00 0.00 0.00 2.08
3212 7115 3.492137 GGCAACGTCCGATTACTTCCTAT 60.492 47.826 0.00 0.00 0.00 2.57
3213 7116 2.159198 GGCAACGTCCGATTACTTCCTA 60.159 50.000 0.00 0.00 0.00 2.94
3214 7117 1.405121 GGCAACGTCCGATTACTTCCT 60.405 52.381 0.00 0.00 0.00 3.36
3215 7118 1.004595 GGCAACGTCCGATTACTTCC 58.995 55.000 0.00 0.00 0.00 3.46
3216 7119 1.659098 CTGGCAACGTCCGATTACTTC 59.341 52.381 0.00 0.00 42.51 3.01
3217 7120 1.674817 CCTGGCAACGTCCGATTACTT 60.675 52.381 0.00 0.00 42.51 2.24
3218 7121 0.108329 CCTGGCAACGTCCGATTACT 60.108 55.000 0.00 0.00 42.51 2.24
3219 7122 0.108520 TCCTGGCAACGTCCGATTAC 60.109 55.000 0.00 0.00 42.51 1.89
3220 7123 0.174845 CTCCTGGCAACGTCCGATTA 59.825 55.000 0.00 0.00 42.51 1.75
3221 7124 1.079127 CTCCTGGCAACGTCCGATT 60.079 57.895 0.00 0.00 42.51 3.34
3222 7125 2.579201 CTCCTGGCAACGTCCGAT 59.421 61.111 0.00 0.00 42.51 4.18
3223 7126 3.691342 CCTCCTGGCAACGTCCGA 61.691 66.667 0.00 0.00 42.51 4.55
3224 7127 4.003788 ACCTCCTGGCAACGTCCG 62.004 66.667 0.00 0.00 42.51 4.79
3225 7128 2.358737 CACCTCCTGGCAACGTCC 60.359 66.667 0.00 0.00 42.51 4.79
3226 7129 3.050275 GCACCTCCTGGCAACGTC 61.050 66.667 0.00 0.00 42.51 4.34
3227 7130 4.643387 GGCACCTCCTGGCAACGT 62.643 66.667 0.00 0.00 45.09 3.99
3232 7135 4.329545 TCGTTGGCACCTCCTGGC 62.330 66.667 0.00 0.00 45.98 4.85
3233 7136 2.358737 GTCGTTGGCACCTCCTGG 60.359 66.667 0.00 0.00 39.83 4.45
3234 7137 2.709125 TTCGTCGTTGGCACCTCCTG 62.709 60.000 0.00 0.00 35.26 3.86
3235 7138 1.827399 ATTCGTCGTTGGCACCTCCT 61.827 55.000 0.00 0.00 35.26 3.69
3236 7139 0.108520 TATTCGTCGTTGGCACCTCC 60.109 55.000 0.00 0.00 0.00 4.30
3237 7140 1.935933 ATATTCGTCGTTGGCACCTC 58.064 50.000 0.00 0.00 0.00 3.85
3238 7141 2.166870 TGTATATTCGTCGTTGGCACCT 59.833 45.455 0.00 0.00 0.00 4.00
3239 7142 2.542597 TGTATATTCGTCGTTGGCACC 58.457 47.619 0.00 0.00 0.00 5.01
3240 7143 4.574759 CTTTGTATATTCGTCGTTGGCAC 58.425 43.478 0.00 0.00 0.00 5.01
3241 7144 3.062909 GCTTTGTATATTCGTCGTTGGCA 59.937 43.478 0.00 0.00 0.00 4.92
3242 7145 3.062909 TGCTTTGTATATTCGTCGTTGGC 59.937 43.478 0.00 0.00 0.00 4.52
3243 7146 4.850859 TGCTTTGTATATTCGTCGTTGG 57.149 40.909 0.00 0.00 0.00 3.77
3244 7147 5.006261 TCCATGCTTTGTATATTCGTCGTTG 59.994 40.000 0.00 0.00 0.00 4.10
3245 7148 5.006358 GTCCATGCTTTGTATATTCGTCGTT 59.994 40.000 0.00 0.00 0.00 3.85
3246 7149 4.506654 GTCCATGCTTTGTATATTCGTCGT 59.493 41.667 0.00 0.00 0.00 4.34
3247 7150 4.084537 GGTCCATGCTTTGTATATTCGTCG 60.085 45.833 0.00 0.00 0.00 5.12
3248 7151 4.814234 TGGTCCATGCTTTGTATATTCGTC 59.186 41.667 0.00 0.00 0.00 4.20
3249 7152 4.776349 TGGTCCATGCTTTGTATATTCGT 58.224 39.130 0.00 0.00 0.00 3.85
3250 7153 5.106555 GGATGGTCCATGCTTTGTATATTCG 60.107 44.000 15.77 0.00 36.28 3.34
3251 7154 5.769662 TGGATGGTCCATGCTTTGTATATTC 59.230 40.000 22.46 0.00 42.67 1.75
3252 7155 5.704354 TGGATGGTCCATGCTTTGTATATT 58.296 37.500 22.46 0.00 42.67 1.28
3253 7156 5.323382 TGGATGGTCCATGCTTTGTATAT 57.677 39.130 22.46 0.00 42.67 0.86
3254 7157 4.787135 TGGATGGTCCATGCTTTGTATA 57.213 40.909 22.46 0.00 42.67 1.47
3255 7158 3.668141 TGGATGGTCCATGCTTTGTAT 57.332 42.857 22.46 0.00 42.67 2.29
3265 7168 2.187958 CTTGTCTAGGTGGATGGTCCA 58.812 52.381 0.00 0.00 45.98 4.02
3266 7169 1.486726 CCTTGTCTAGGTGGATGGTCC 59.513 57.143 0.00 0.00 39.39 4.46
3267 7170 2.990066 CCTTGTCTAGGTGGATGGTC 57.010 55.000 0.00 0.00 39.39 4.02
3277 7180 5.470047 AGTACAACCTTGACCTTGTCTAG 57.530 43.478 0.00 0.00 35.74 2.43
3278 7181 6.073314 AGTAGTACAACCTTGACCTTGTCTA 58.927 40.000 2.52 0.00 32.77 2.59
3279 7182 4.900054 AGTAGTACAACCTTGACCTTGTCT 59.100 41.667 2.52 0.00 32.77 3.41
3280 7183 5.211174 AGTAGTACAACCTTGACCTTGTC 57.789 43.478 2.52 0.00 32.77 3.18
3281 7184 5.245526 CCTAGTAGTACAACCTTGACCTTGT 59.754 44.000 2.52 0.00 34.89 3.16
3282 7185 5.479375 TCCTAGTAGTACAACCTTGACCTTG 59.521 44.000 2.52 0.00 0.00 3.61
3283 7186 5.648247 TCCTAGTAGTACAACCTTGACCTT 58.352 41.667 2.52 0.00 0.00 3.50
3284 7187 5.266709 TCCTAGTAGTACAACCTTGACCT 57.733 43.478 2.52 0.00 0.00 3.85
3285 7188 6.832900 AGTATCCTAGTAGTACAACCTTGACC 59.167 42.308 2.52 0.00 0.00 4.02
3286 7189 7.555554 TGAGTATCCTAGTAGTACAACCTTGAC 59.444 40.741 2.52 0.00 0.00 3.18
3287 7190 7.636579 TGAGTATCCTAGTAGTACAACCTTGA 58.363 38.462 2.52 0.00 0.00 3.02
3288 7191 7.876936 TGAGTATCCTAGTAGTACAACCTTG 57.123 40.000 2.52 0.00 0.00 3.61
3289 7192 8.114743 AGTTGAGTATCCTAGTAGTACAACCTT 58.885 37.037 2.52 0.00 36.71 3.50
3290 7193 7.641249 AGTTGAGTATCCTAGTAGTACAACCT 58.359 38.462 2.52 0.00 36.71 3.50
3291 7194 7.013178 GGAGTTGAGTATCCTAGTAGTACAACC 59.987 44.444 2.52 0.00 36.71 3.77
3292 7195 7.555554 TGGAGTTGAGTATCCTAGTAGTACAAC 59.444 40.741 2.52 0.00 36.50 3.32
3293 7196 7.636579 TGGAGTTGAGTATCCTAGTAGTACAA 58.363 38.462 2.52 0.00 36.50 2.41
3294 7197 7.204243 TGGAGTTGAGTATCCTAGTAGTACA 57.796 40.000 2.52 0.00 36.50 2.90
3295 7198 7.774625 ACTTGGAGTTGAGTATCCTAGTAGTAC 59.225 40.741 6.55 0.00 45.75 2.73
3296 7199 7.870027 ACTTGGAGTTGAGTATCCTAGTAGTA 58.130 38.462 6.55 0.00 45.75 1.82
3297 7200 6.733509 ACTTGGAGTTGAGTATCCTAGTAGT 58.266 40.000 6.55 0.00 45.75 2.73
3298 7201 7.057894 AGACTTGGAGTTGAGTATCCTAGTAG 58.942 42.308 8.04 0.00 46.95 2.57
3299 7202 6.971340 AGACTTGGAGTTGAGTATCCTAGTA 58.029 40.000 8.04 0.00 46.95 1.82
3301 7204 5.888724 TGAGACTTGGAGTTGAGTATCCTAG 59.111 44.000 1.87 1.87 42.14 3.02
3302 7205 5.652891 GTGAGACTTGGAGTTGAGTATCCTA 59.347 44.000 0.00 0.00 34.17 2.94
3303 7206 4.464597 GTGAGACTTGGAGTTGAGTATCCT 59.535 45.833 0.00 0.00 34.17 3.24
3304 7207 4.749976 GTGAGACTTGGAGTTGAGTATCC 58.250 47.826 0.00 0.00 34.17 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.