AutoCloner

Multiple sequence alignment - TraesCS3B01G513000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G513000	chr3B	100.000	3131	0	0	1	3131	756441336	756438206	0.000000e+00	5782.0
1	TraesCS3B01G513000	chr3B	78.065	465	69	18	1043	1504	773882739	773882305	2.390000e-66	263.0
2	TraesCS3B01G513000	chr3B	90.385	156	15	0	1043	1198	752973197	752973042	4.090000e-49	206.0
3	TraesCS3B01G513000	chrUn	97.101	1518	31	2	1614	3131	217828741	217830245	0.000000e+00	2547.0
4	TraesCS3B01G513000	chrUn	97.101	1518	31	2	1614	3131	227093009	227094513	0.000000e+00	2547.0
5	TraesCS3B01G513000	chrUn	98.492	1194	17	1	1938	3131	299517943	299519135	0.000000e+00	2104.0
6	TraesCS3B01G513000	chrUn	98.157	1194	19	3	1938	3131	336705816	336704626	0.000000e+00	2080.0
7	TraesCS3B01G513000	chrUn	98.660	970	12	1	1938	2907	406079700	406080668	0.000000e+00	1718.0
8	TraesCS3B01G513000	chrUn	92.517	147	11	0	1046	1192	340249217	340249071	8.800000e-51	211.0
9	TraesCS3B01G513000	chrUn	88.489	139	7	3	712	850	217828565	217828694	3.230000e-35	159.0
10	TraesCS3B01G513000	chrUn	88.489	139	7	3	712	850	227092833	227092962	3.230000e-35	159.0
11	TraesCS3B01G513000	chrUn	100.000	42	0	0	1938	1979	285862279	285862320	9.310000e-11	78.7
12	TraesCS3B01G513000	chr3A	89.994	1719	114	23	712	2406	702421935	702420251	0.000000e+00	2169.0
13	TraesCS3B01G513000	chr3A	91.190	874	62	8	2194	3062	702420350	702419487	0.000000e+00	1173.0
14	TraesCS3B01G513000	chr3A	72.662	1112	228	56	1040	2105	714595679	714596760	1.830000e-77	300.0
15	TraesCS3B01G513000	chr3A	88.953	172	19	0	1040	1211	699533433	699533604	2.450000e-51	213.0
16	TraesCS3B01G513000	chr3A	92.361	144	9	2	1040	1182	700249064	700249206	1.470000e-48	204.0
17	TraesCS3B01G513000	chr2A	98.074	1194	22	1	1938	3131	11119939	11121131	0.000000e+00	2076.0
18	TraesCS3B01G513000	chr3D	92.045	880	54	7	1631	2505	568813029	568813897	0.000000e+00	1223.0
19	TraesCS3B01G513000	chr3D	91.611	453	29	4	2585	3028	568814066	568814518	4.440000e-173	617.0
20	TraesCS3B01G513000	chr3D	83.976	337	47	5	2792	3123	569809939	569809605	1.810000e-82	316.0
21	TraesCS3B01G513000	chr3D	77.178	482	79	18	1043	1504	579582747	579582277	5.180000e-63	252.0
22	TraesCS3B01G513000	chr3D	90.506	158	15	0	1038	1195	565830794	565830951	3.160000e-50	209.0
23	TraesCS3B01G513000	chr3D	87.861	173	20	1	1040	1211	565077540	565077712	5.290000e-48	202.0
24	TraesCS3B01G513000	chr3D	82.511	223	31	5	1040	1255	565641967	565642188	4.120000e-44	189.0
25	TraesCS3B01G513000	chr3D	75.824	364	69	17	2359	2713	567907332	567907685	1.930000e-37	167.0
26	TraesCS3B01G513000	chr3D	75.568	352	71	12	2359	2703	569466002	569465659	3.230000e-35	159.0
27	TraesCS3B01G513000	chr3D	84.028	144	22	1	2981	3123	567265706	567265849	1.510000e-28	137.0
28	TraesCS3B01G513000	chr3D	88.889	45	3	1	1387	1429	568017814	568017858	2.000000e-03	54.7
29	TraesCS3B01G513000	chr2D	96.075	535	17	4	190	722	415566265	415565733	0.000000e+00	869.0
30	TraesCS3B01G513000	chr2D	96.015	527	20	1	190	715	57201510	57202036	0.000000e+00	856.0
31	TraesCS3B01G513000	chr2D	96.015	527	20	1	190	715	206693182	206693708	0.000000e+00	856.0
32	TraesCS3B01G513000	chr2D	94.737	190	10	0	1	190	57201272	57201461	2.360000e-76	296.0
33	TraesCS3B01G513000	chr2D	94.737	190	10	0	1	190	206692944	206693133	2.360000e-76	296.0
34	TraesCS3B01G513000	chr7D	96.205	527	19	1	190	715	601363009	601363535	0.000000e+00	861.0
35	TraesCS3B01G513000	chr7D	96.015	527	20	1	190	715	478770047	478770573	0.000000e+00	856.0
36	TraesCS3B01G513000	chr7D	95.446	527	23	1	190	715	87365318	87365844	0.000000e+00	839.0
37	TraesCS3B01G513000	chr7D	95.789	190	8	0	1	190	478769809	478769998	1.090000e-79	307.0
38	TraesCS3B01G513000	chr7D	95.263	190	9	0	1	190	87365080	87365269	5.070000e-78	302.0
39	TraesCS3B01G513000	chr1D	96.205	527	19	1	190	715	494855389	494855915	0.000000e+00	861.0
40	TraesCS3B01G513000	chr1D	95.263	190	9	0	1	190	22300513	22300324	5.070000e-78	302.0
41	TraesCS3B01G513000	chr1D	94.737	190	10	0	1	190	494855151	494855340	2.360000e-76	296.0
42	TraesCS3B01G513000	chr7B	95.429	525	22	2	192	715	23296942	23297465	0.000000e+00	835.0
43	TraesCS3B01G513000	chr7B	95.263	190	9	0	1	190	23296702	23296891	5.070000e-78	302.0
44	TraesCS3B01G513000	chr6B	95.256	527	23	2	190	715	532789900	532790425	0.000000e+00	833.0
45	TraesCS3B01G513000	chr6B	95.789	190	8	0	1	190	532789662	532789851	1.090000e-79	307.0
46	TraesCS3B01G513000	chr5A	95.263	190	9	0	1	190	36310351	36310162	5.070000e-78	302.0
47	TraesCS3B01G513000	chr4A	81.690	213	37	2	1043	1254	661280682	661280471	3.210000e-40	176.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G513000	chr3B	756438206	756441336	3130	True	5782.0	5782	100.0000	1	3131	1	chr3B.!!$R2	3130
1	TraesCS3B01G513000	chrUn	299517943	299519135	1192	False	2104.0	2104	98.4920	1938	3131	1	chrUn.!!$F2	1193
2	TraesCS3B01G513000	chrUn	336704626	336705816	1190	True	2080.0	2080	98.1570	1938	3131	1	chrUn.!!$R1	1193
3	TraesCS3B01G513000	chrUn	406079700	406080668	968	False	1718.0	1718	98.6600	1938	2907	1	chrUn.!!$F3	969
4	TraesCS3B01G513000	chrUn	217828565	217830245	1680	False	1353.0	2547	92.7950	712	3131	2	chrUn.!!$F4	2419
5	TraesCS3B01G513000	chrUn	227092833	227094513	1680	False	1353.0	2547	92.7950	712	3131	2	chrUn.!!$F5	2419
6	TraesCS3B01G513000	chr3A	702419487	702421935	2448	True	1671.0	2169	90.5920	712	3062	2	chr3A.!!$R1	2350
7	TraesCS3B01G513000	chr3A	714595679	714596760	1081	False	300.0	300	72.6620	1040	2105	1	chr3A.!!$F3	1065
8	TraesCS3B01G513000	chr2A	11119939	11121131	1192	False	2076.0	2076	98.0740	1938	3131	1	chr2A.!!$F1	1193
9	TraesCS3B01G513000	chr3D	568813029	568814518	1489	False	920.0	1223	91.8280	1631	3028	2	chr3D.!!$F7	1397
10	TraesCS3B01G513000	chr2D	415565733	415566265	532	True	869.0	869	96.0750	190	722	1	chr2D.!!$R1	532
11	TraesCS3B01G513000	chr2D	57201272	57202036	764	False	576.0	856	95.3760	1	715	2	chr2D.!!$F1	714
12	TraesCS3B01G513000	chr2D	206692944	206693708	764	False	576.0	856	95.3760	1	715	2	chr2D.!!$F2	714
13	TraesCS3B01G513000	chr7D	601363009	601363535	526	False	861.0	861	96.2050	190	715	1	chr7D.!!$F1	525
14	TraesCS3B01G513000	chr7D	478769809	478770573	764	False	581.5	856	95.9020	1	715	2	chr7D.!!$F3	714
15	TraesCS3B01G513000	chr7D	87365080	87365844	764	False	570.5	839	95.3545	1	715	2	chr7D.!!$F2	714
16	TraesCS3B01G513000	chr1D	494855151	494855915	764	False	578.5	861	95.4710	1	715	2	chr1D.!!$F1	714
17	TraesCS3B01G513000	chr7B	23296702	23297465	763	False	568.5	835	95.3460	1	715	2	chr7B.!!$F1	714
18	TraesCS3B01G513000	chr6B	532789662	532790425	763	False	570.0	833	95.5225	1	715	2	chr6B.!!$F1	714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
575	626	0.104304	GCATGTAATCCGTCCGGTCT	59.896	55.0	0.00	0.0	36.47	3.85	F
1370	1436	0.036732	TTCCGCAACATGAGCTCCTT	59.963	50.0	12.15	0.0	0.00	3.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1595	1688	0.108585	GGAGCCTGTGAGTTTCCACA	59.891	55.0	0.0	0.0	43.98	4.17	R
2435	2667	0.399454	ACTCACAGCAGCCACTTCAT	59.601	50.0	0.0	0.0	0.00	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.325355	TAAGGGCCGATAGTCCTTCG	58.675	55.000	1.05	0.00	43.59	3.79
36	37	3.941483	CCTTCGGCACATAAGAGAAACAT	59.059	43.478	0.00	0.00	0.00	2.71
65	66	2.041819	GGGGATCCCCGTGTCTCT	60.042	66.667	34.54	0.00	46.66	3.10
171	172	5.163447	CCATTTGAATCCACTGAGCATGAAT	60.163	40.000	0.00	0.00	0.00	2.57
267	317	2.481276	GCACTCATATGCCACTACGACA	60.481	50.000	0.00	0.00	39.86	4.35
493	544	3.770388	TGGGATCGTACCTGTATTGACAA	59.230	43.478	0.00	0.00	34.35	3.18
503	554	3.120199	CCTGTATTGACAACCGCAAGAAG	60.120	47.826	0.00	0.00	35.03	2.85
575	626	0.104304	GCATGTAATCCGTCCGGTCT	59.896	55.000	0.00	0.00	36.47	3.85
654	705	5.359194	ACGGATCCATAAGTGACTCATTT	57.641	39.130	13.41	0.00	0.00	2.32
724	776	6.592607	GCTGGTACATTAACTTACTAGCACAA	59.407	38.462	20.30	0.00	46.55	3.33
767	819	6.758806	TCTTTTAGTGGAGTACCCTTTTCT	57.241	37.500	0.00	0.00	35.38	2.52
770	822	8.716779	TCTTTTAGTGGAGTACCCTTTTCTTTA	58.283	33.333	0.00	0.00	35.38	1.85
774	826	7.997773	AGTGGAGTACCCTTTTCTTTATTTC	57.002	36.000	0.00	0.00	35.38	2.17
841	893	0.106819	CATAGAAGCAAGCCCAGCCT	60.107	55.000	0.00	0.00	0.00	4.58
851	903	2.281761	CCCAGCCTGTTGAAGCGT	60.282	61.111	0.00	0.00	0.00	5.07
901	957	2.298163	CCTGCTCAAAGGCATTTCTGTT	59.702	45.455	0.00	0.00	41.63	3.16
902	958	3.572584	CTGCTCAAAGGCATTTCTGTTC	58.427	45.455	0.00	0.00	41.63	3.18
903	959	2.957680	TGCTCAAAGGCATTTCTGTTCA	59.042	40.909	0.00	0.00	37.29	3.18
941	997	5.208294	AGGAAGACCTACCTATCTCACAA	57.792	43.478	0.00	0.00	45.83	3.33
948	1010	3.835395	CCTACCTATCTCACAATCCCCTC	59.165	52.174	0.00	0.00	0.00	4.30
1015	1077	2.746359	CCATGGCGGATCCTCCTC	59.254	66.667	21.37	3.25	36.56	3.71
1021	1083	2.598985	CGGATCCTCCTCCTCCCG	60.599	72.222	10.75	0.00	33.30	5.14
1027	1089	4.824515	CTCCTCCTCCCGACCGCT	62.825	72.222	0.00	0.00	0.00	5.52
1033	1095	4.899239	CTCCCGACCGCTGCATCC	62.899	72.222	0.00	0.00	0.00	3.51
1035	1097	3.536917	CCCGACCGCTGCATCCTA	61.537	66.667	0.00	0.00	0.00	2.94
1036	1098	2.499205	CCGACCGCTGCATCCTAA	59.501	61.111	0.00	0.00	0.00	2.69
1037	1099	1.069765	CCGACCGCTGCATCCTAAT	59.930	57.895	0.00	0.00	0.00	1.73
1038	1100	0.532862	CCGACCGCTGCATCCTAATT	60.533	55.000	0.00	0.00	0.00	1.40
1041	1103	0.546122	ACCGCTGCATCCTAATTCCA	59.454	50.000	0.00	0.00	0.00	3.53
1101	1163	1.134280	CCCAAATCTCTCATCCGCTGT	60.134	52.381	0.00	0.00	0.00	4.40
1104	1166	1.107114	AATCTCTCATCCGCTGTCGT	58.893	50.000	0.00	0.00	0.00	4.34
1164	1230	3.376935	CTTCCTCCTCGCGCACCAT	62.377	63.158	8.75	0.00	0.00	3.55
1207	1273	2.529632	TCCTCTGCAGCTTAGAAGACA	58.470	47.619	9.47	0.00	0.00	3.41
1218	1284	3.744987	CTTAGAAGACAACGACGACGAT	58.255	45.455	15.32	0.00	42.66	3.73
1222	1288	0.589708	AGACAACGACGACGATGACA	59.410	50.000	22.16	0.00	43.20	3.58
1251	1317	1.078426	CATCACCCCCTTCGACCAC	60.078	63.158	0.00	0.00	0.00	4.16
1257	1323	3.307906	CCCTTCGACCACCGGACA	61.308	66.667	9.46	0.00	39.14	4.02
1258	1324	2.656069	CCCTTCGACCACCGGACAT	61.656	63.158	9.46	0.00	39.14	3.06
1259	1325	1.153628	CCTTCGACCACCGGACATC	60.154	63.158	9.46	0.23	39.14	3.06
1260	1326	1.153628	CTTCGACCACCGGACATCC	60.154	63.158	9.46	0.00	39.14	3.51
1271	1337	2.268920	GACATCCGGCAAGCTCCA	59.731	61.111	0.00	0.00	0.00	3.86
1310	1376	3.201494	CGCCTCGGACATCTGTCT	58.799	61.111	9.98	0.00	44.20	3.41
1370	1436	0.036732	TTCCGCAACATGAGCTCCTT	59.963	50.000	12.15	0.00	0.00	3.36
1389	1455	1.941377	TTGGCTGCCAATTCTCCATT	58.059	45.000	29.24	0.00	38.75	3.16
1461	1527	3.655276	ACCGTCGAGTACACAATCTTT	57.345	42.857	0.00	0.00	0.00	2.52
1513	1579	1.718757	CCGGCTATTGCTTCACAGGC	61.719	60.000	0.00	0.00	39.59	4.85
1518	1584	2.012673	CTATTGCTTCACAGGCTCCAC	58.987	52.381	0.00	0.00	0.00	4.02
1529	1595	0.037303	AGGCTCCACATGTTGAGGTG	59.963	55.000	24.04	12.35	33.51	4.00
1579	1672	2.510238	GCCAGCAGCTGAGGTACG	60.510	66.667	24.90	6.85	38.99	3.67
1594	1687	2.198287	TACGTAGGCAGGCCCGATC	61.198	63.158	14.43	0.00	39.21	3.69
1595	1688	2.635787	TACGTAGGCAGGCCCGATCT	62.636	60.000	14.43	0.00	39.21	2.75
1597	1690	2.041922	TAGGCAGGCCCGATCTGT	60.042	61.111	6.70	0.00	39.21	3.41
1605	1698	0.744771	GGCCCGATCTGTGGAAACTC	60.745	60.000	0.00	0.00	0.00	3.01
1664	1767	1.399714	CATTGGCACTCATCAGGCAT	58.600	50.000	0.00	0.00	40.17	4.40
1671	1774	1.947456	CACTCATCAGGCATCATGGTG	59.053	52.381	0.10	0.10	0.00	4.17
1703	1806	2.365617	ACACCACATCTGAGTCGTTCTT	59.634	45.455	0.00	0.00	0.00	2.52
1743	1849	0.264657	TCCCTGGCTATGCTGACCTA	59.735	55.000	0.00	0.00	0.00	3.08
1879	1987	6.207810	TGTTAAATTACCGGTTGCAGAAATCT	59.792	34.615	15.04	0.00	0.00	2.40
2182	2293	1.068741	GGCTTACTGTCAGTATCCCCG	59.931	57.143	13.46	2.41	29.64	5.73
2925	3265	7.332557	TCATTTGGAAAGATATGCTGCAATTT	58.667	30.769	6.36	5.84	0.00	1.82
2944	3284	7.335673	TGCAATTTATTCTTCGTGAATCCACTA	59.664	33.333	9.03	0.00	43.69	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	6.375455	CCCCATATATGTTTCTCTTATGTGCC	59.625	42.308	11.73	0.00	30.05	5.01
36	37	1.657162	GGGATCCCCTCTCCCCATATA	59.343	57.143	21.42	0.00	45.80	0.86
171	172	4.415596	AGTTATGCTCACCAAATTGGGAA	58.584	39.130	17.27	2.73	43.37	3.97
267	317	5.319453	CCAGGGCACATCATAACTGATAAT	58.681	41.667	0.00	0.00	40.20	1.28
406	457	0.905357	AACCCAGAGAAGATCACCCG	59.095	55.000	0.00	0.00	0.00	5.28
503	554	2.295070	GGAGGAGATCTAACGAAGGAGC	59.705	54.545	0.00	0.00	0.00	4.70
584	635	7.775120	AGCTTTATTCAGTATTGGTGATTTGG	58.225	34.615	0.00	0.00	0.00	3.28
654	705	9.317827	AGTTAAGAGGCGTTTAGGGATTATATA	57.682	33.333	0.00	0.00	0.00	0.86
841	893	2.333926	CCGACAGATAACGCTTCAACA	58.666	47.619	0.00	0.00	0.00	3.33
851	903	2.481276	CCATCTCGTTGCCGACAGATAA	60.481	50.000	0.00	0.00	38.40	1.75
901	957	1.239347	CTCTCTCGTGGACACAGTGA	58.761	55.000	7.81	5.29	0.00	3.41
902	958	0.242286	CCTCTCTCGTGGACACAGTG	59.758	60.000	0.00	0.00	0.00	3.66
903	959	0.110678	TCCTCTCTCGTGGACACAGT	59.889	55.000	3.12	0.00	0.00	3.55
934	990	1.945354	GCGTCGAGGGGATTGTGAGA	61.945	60.000	7.31	0.00	0.00	3.27
956	1018	0.108898	CAAGAGGAGAGTGAGTGCGG	60.109	60.000	0.00	0.00	0.00	5.69
1015	1077	4.899239	GATGCAGCGGTCGGGAGG	62.899	72.222	0.00	0.00	0.00	4.30
1021	1083	1.230324	GGAATTAGGATGCAGCGGTC	58.770	55.000	0.00	0.00	0.00	4.79
1027	1089	3.031013	TCTCGTCTGGAATTAGGATGCA	58.969	45.455	0.00	0.00	0.00	3.96
1029	1091	4.480541	CGATCTCGTCTGGAATTAGGATG	58.519	47.826	0.00	0.00	34.11	3.51
1033	1095	2.034685	TGGCGATCTCGTCTGGAATTAG	59.965	50.000	5.73	0.00	45.41	1.73
1034	1096	2.028876	TGGCGATCTCGTCTGGAATTA	58.971	47.619	5.73	0.00	45.41	1.40
1035	1097	0.824109	TGGCGATCTCGTCTGGAATT	59.176	50.000	5.73	0.00	45.41	2.17
1036	1098	1.000283	GATGGCGATCTCGTCTGGAAT	60.000	52.381	5.73	0.00	45.41	3.01
1037	1099	0.385751	GATGGCGATCTCGTCTGGAA	59.614	55.000	5.73	0.00	45.41	3.53
1038	1100	0.466372	AGATGGCGATCTCGTCTGGA	60.466	55.000	5.25	0.00	45.41	3.86
1041	1103	1.459455	CCCAGATGGCGATCTCGTCT	61.459	60.000	8.44	0.00	45.41	4.18
1186	1252	3.102972	TGTCTTCTAAGCTGCAGAGGAT	58.897	45.455	20.43	1.81	31.68	3.24
1207	1273	1.280746	ACGTGTCATCGTCGTCGTT	59.719	52.632	1.33	0.00	40.04	3.85
1218	1284	2.228103	GGTGATGTACAGAGACGTGTCA	59.772	50.000	15.80	0.00	31.46	3.58
1222	1288	1.183549	GGGGTGATGTACAGAGACGT	58.816	55.000	0.33	0.00	0.00	4.34
1230	1296	0.177373	GGTCGAAGGGGGTGATGTAC	59.823	60.000	0.00	0.00	0.00	2.90
1254	1320	1.817099	CTGGAGCTTGCCGGATGTC	60.817	63.158	5.05	0.00	36.35	3.06
1255	1321	2.270205	CTGGAGCTTGCCGGATGT	59.730	61.111	5.05	0.00	36.35	3.06
1257	1323	4.496336	GGCTGGAGCTTGCCGGAT	62.496	66.667	5.05	0.00	39.71	4.18
1299	1365	5.344884	GCACTTAGTCTTAGACAGATGTCC	58.655	45.833	15.23	0.00	45.85	4.02
1303	1369	4.647399	GGAGGCACTTAGTCTTAGACAGAT	59.353	45.833	15.23	0.00	41.55	2.90
1310	1376	3.774734	TCACAGGAGGCACTTAGTCTTA	58.225	45.455	0.00	0.00	41.55	2.10
1476	1542	0.250901	GGTACTCGCCGGTAGGGATA	60.251	60.000	1.90	0.00	38.47	2.59
1497	1563	1.020437	GGAGCCTGTGAAGCAATAGC	58.980	55.000	0.00	0.00	42.56	2.97
1513	1579	2.549064	TCACACCTCAACATGTGGAG	57.451	50.000	21.66	21.66	45.16	3.86
1518	1584	1.471287	CAGCCATCACACCTCAACATG	59.529	52.381	0.00	0.00	0.00	3.21
1529	1595	1.134965	AGAAGACGTAGCAGCCATCAC	60.135	52.381	0.00	0.00	0.00	3.06
1579	1672	2.423446	CAGATCGGGCCTGCCTAC	59.577	66.667	6.73	0.00	36.10	3.18
1595	1688	0.108585	GGAGCCTGTGAGTTTCCACA	59.891	55.000	0.00	0.00	43.98	4.17
1597	1690	1.761174	GGGAGCCTGTGAGTTTCCA	59.239	57.895	0.00	0.00	0.00	3.53
1605	1698	1.692042	AGATCTGGGGGAGCCTGTG	60.692	63.158	0.00	0.00	0.00	3.66
1664	1767	3.431626	GGTGTCGAATACCATCACCATGA	60.432	47.826	12.74	0.00	45.22	3.07
1703	1806	2.125552	CTGGAGAACGCATCCGCA	60.126	61.111	0.00	0.00	39.91	5.69
1732	1838	8.478066	GTCACCAATATCATATAGGTCAGCATA	58.522	37.037	0.00	0.00	0.00	3.14
1743	1849	5.713389	CCCAAGCATGTCACCAATATCATAT	59.287	40.000	0.00	0.00	0.00	1.78
1879	1987	1.412710	GTCGAGCTTATCATGGACCCA	59.587	52.381	0.00	0.00	0.00	4.51
2182	2293	5.490139	ACACATTGCAGCAACTGATATAC	57.510	39.130	10.85	0.00	32.44	1.47
2356	2587	9.791820	CTTGATCATAACTTGCATACATCAAAA	57.208	29.630	0.00	0.00	30.65	2.44
2435	2667	0.399454	ACTCACAGCAGCCACTTCAT	59.601	50.000	0.00	0.00	0.00	2.57
2608	2938	3.745799	TCAATAAACAAAGGCACGAGGA	58.254	40.909	0.00	0.00	0.00	3.71
2738	3069	7.633789	AGTGGATAATCCGATATAGCCAAAAT	58.366	34.615	8.31	0.00	39.13	1.82
2925	3265	7.107639	TGATGTAGTGGATTCACGAAGAATA	57.892	36.000	0.00	0.00	46.76	1.75
2944	3284	9.657419	GGAAAAACAGAATATTCCAAATGATGT	57.343	29.630	11.92	5.27	40.81	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.